Multiple sequence alignment - TraesCS5D01G434000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G434000 chr5D 100.000 2502 0 0 1 2502 489755670 489753169 0.000000e+00 4621.0
1 TraesCS5D01G434000 chr5D 96.758 401 7 1 1 395 125658079 125657679 0.000000e+00 664.0
2 TraesCS5D01G434000 chr5D 96.456 395 14 0 1 395 284885274 284884880 0.000000e+00 652.0
3 TraesCS5D01G434000 chr5D 95.696 395 9 1 1 395 525155934 525155548 1.630000e-176 628.0
4 TraesCS5D01G434000 chr5D 94.217 415 5 1 1 396 423749351 423748937 1.270000e-172 616.0
5 TraesCS5D01G434000 chr5D 93.720 414 7 1 1 395 474542946 474542533 9.900000e-169 603.0
6 TraesCS5D01G434000 chr5D 92.086 417 10 4 1 395 78754981 78754566 1.300000e-157 566.0
7 TraesCS5D01G434000 chr5A 92.692 1861 102 23 396 2237 611332366 611330521 0.000000e+00 2652.0
8 TraesCS5D01G434000 chr5A 88.108 185 22 0 396 580 611333526 611333342 1.160000e-53 220.0
9 TraesCS5D01G434000 chr5A 90.196 102 6 3 2384 2482 611325378 611325278 2.020000e-26 130.0
10 TraesCS5D01G434000 chr5A 87.778 90 9 1 571 658 611333327 611333238 1.220000e-18 104.0
11 TraesCS5D01G434000 chr5B 89.020 1530 118 25 396 1896 603941755 603940247 0.000000e+00 1849.0
12 TraesCS5D01G434000 chr5B 92.063 504 31 8 1900 2396 603940278 603939777 0.000000e+00 701.0
13 TraesCS5D01G434000 chr5B 91.667 108 8 1 2395 2502 603939804 603939698 5.580000e-32 148.0
14 TraesCS5D01G434000 chr2D 97.778 405 8 1 1 404 102620173 102619769 0.000000e+00 697.0
15 TraesCS5D01G434000 chr2D 82.584 178 23 7 1651 1822 416857375 416857200 1.550000e-32 150.0
16 TraesCS5D01G434000 chr2A 96.203 395 15 0 1 395 139971830 139972224 0.000000e+00 647.0
17 TraesCS5D01G434000 chr3D 96.212 396 9 2 1 396 152703285 152702896 0.000000e+00 643.0
18 TraesCS5D01G434000 chr7D 95.110 409 6 1 1 395 508795457 508795049 1.260000e-177 632.0
19 TraesCS5D01G434000 chr7D 82.584 178 23 7 1651 1822 46412068 46411893 1.550000e-32 150.0
20 TraesCS5D01G434000 chr1D 93.735 415 7 1 1 396 481961229 481961643 2.750000e-169 604.0
21 TraesCS5D01G434000 chr1D 83.721 172 20 7 1651 1816 423281705 423281874 3.330000e-34 156.0
22 TraesCS5D01G434000 chr1D 83.051 177 24 5 1651 1822 452830435 452830260 3.330000e-34 156.0
23 TraesCS5D01G434000 chr6A 84.091 176 19 7 1650 1820 139516205 139516376 7.160000e-36 161.0
24 TraesCS5D01G434000 chr7A 83.721 172 20 6 1650 1816 486923517 486923685 3.330000e-34 156.0
25 TraesCS5D01G434000 chr7B 83.929 168 19 7 1651 1816 745099809 745099648 1.200000e-33 154.0
26 TraesCS5D01G434000 chr4A 83.077 65 9 2 397 460 646084054 646084117 9.670000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G434000 chr5D 489753169 489755670 2501 True 4621.000000 4621 100.000000 1 2502 1 chr5D.!!$R6 2501
1 TraesCS5D01G434000 chr5A 611330521 611333526 3005 True 992.000000 2652 89.526000 396 2237 3 chr5A.!!$R2 1841
2 TraesCS5D01G434000 chr5B 603939698 603941755 2057 True 899.333333 1849 90.916667 396 2502 3 chr5B.!!$R1 2106

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.035739 GGGGCTCTGTTTTGTACCGA 59.964 55.0 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2164 3359 0.178938 TCATTGTGGCCATGTGGGTT 60.179 50.0 9.72 0.0 39.65 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.441901 CCTCCTCCTCGCTGCTCT 60.442 66.667 0.00 0.00 0.00 4.09
18 19 2.489275 CCTCCTCCTCGCTGCTCTC 61.489 68.421 0.00 0.00 0.00 3.20
19 20 2.441164 TCCTCCTCGCTGCTCTCC 60.441 66.667 0.00 0.00 0.00 3.71
20 21 2.441901 CCTCCTCGCTGCTCTCCT 60.442 66.667 0.00 0.00 0.00 3.69
21 22 2.489275 CCTCCTCGCTGCTCTCCTC 61.489 68.421 0.00 0.00 0.00 3.71
22 23 1.453745 CTCCTCGCTGCTCTCCTCT 60.454 63.158 0.00 0.00 0.00 3.69
23 24 1.447317 CTCCTCGCTGCTCTCCTCTC 61.447 65.000 0.00 0.00 0.00 3.20
24 25 2.489275 CCTCGCTGCTCTCCTCTCC 61.489 68.421 0.00 0.00 0.00 3.71
25 26 1.752310 CTCGCTGCTCTCCTCTCCA 60.752 63.158 0.00 0.00 0.00 3.86
26 27 1.076412 TCGCTGCTCTCCTCTCCAT 60.076 57.895 0.00 0.00 0.00 3.41
27 28 1.106351 TCGCTGCTCTCCTCTCCATC 61.106 60.000 0.00 0.00 0.00 3.51
28 29 1.747774 GCTGCTCTCCTCTCCATCC 59.252 63.158 0.00 0.00 0.00 3.51
29 30 0.760189 GCTGCTCTCCTCTCCATCCT 60.760 60.000 0.00 0.00 0.00 3.24
30 31 1.792115 CTGCTCTCCTCTCCATCCTT 58.208 55.000 0.00 0.00 0.00 3.36
31 32 1.688197 CTGCTCTCCTCTCCATCCTTC 59.312 57.143 0.00 0.00 0.00 3.46
32 33 1.047801 GCTCTCCTCTCCATCCTTCC 58.952 60.000 0.00 0.00 0.00 3.46
33 34 1.690845 GCTCTCCTCTCCATCCTTCCA 60.691 57.143 0.00 0.00 0.00 3.53
34 35 2.038659 CTCTCCTCTCCATCCTTCCAC 58.961 57.143 0.00 0.00 0.00 4.02
35 36 0.749649 CTCCTCTCCATCCTTCCACG 59.250 60.000 0.00 0.00 0.00 4.94
36 37 0.335019 TCCTCTCCATCCTTCCACGA 59.665 55.000 0.00 0.00 0.00 4.35
37 38 0.461961 CCTCTCCATCCTTCCACGAC 59.538 60.000 0.00 0.00 0.00 4.34
38 39 0.101399 CTCTCCATCCTTCCACGACG 59.899 60.000 0.00 0.00 0.00 5.12
39 40 1.141881 CTCCATCCTTCCACGACGG 59.858 63.158 0.00 0.00 0.00 4.79
40 41 2.511600 CCATCCTTCCACGACGGC 60.512 66.667 0.00 0.00 33.14 5.68
41 42 2.264480 CATCCTTCCACGACGGCA 59.736 61.111 0.00 0.00 33.14 5.69
42 43 1.153369 CATCCTTCCACGACGGCAT 60.153 57.895 0.00 0.00 33.14 4.40
43 44 1.144057 ATCCTTCCACGACGGCATC 59.856 57.895 0.00 0.00 33.14 3.91
44 45 1.330655 ATCCTTCCACGACGGCATCT 61.331 55.000 0.00 0.00 33.14 2.90
45 46 1.079127 CCTTCCACGACGGCATCTT 60.079 57.895 0.00 0.00 33.14 2.40
46 47 1.084370 CCTTCCACGACGGCATCTTC 61.084 60.000 0.00 0.00 33.14 2.87
47 48 0.108615 CTTCCACGACGGCATCTTCT 60.109 55.000 0.00 0.00 33.14 2.85
48 49 1.134367 CTTCCACGACGGCATCTTCTA 59.866 52.381 0.00 0.00 33.14 2.10
49 50 0.454600 TCCACGACGGCATCTTCTAC 59.545 55.000 0.00 0.00 33.14 2.59
50 51 0.866061 CCACGACGGCATCTTCTACG 60.866 60.000 0.00 0.00 0.00 3.51
51 52 0.866061 CACGACGGCATCTTCTACGG 60.866 60.000 0.00 0.00 0.00 4.02
52 53 1.944676 CGACGGCATCTTCTACGGC 60.945 63.158 0.00 0.00 0.00 5.68
54 55 2.658593 CGGCATCTTCTACGGCGG 60.659 66.667 13.24 0.00 44.08 6.13
55 56 2.280186 GGCATCTTCTACGGCGGG 60.280 66.667 13.24 3.49 0.00 6.13
56 57 2.280186 GCATCTTCTACGGCGGGG 60.280 66.667 13.24 3.07 0.00 5.73
57 58 2.792947 GCATCTTCTACGGCGGGGA 61.793 63.158 13.24 5.85 0.00 4.81
58 59 1.364171 CATCTTCTACGGCGGGGAG 59.636 63.158 13.24 8.02 0.00 4.30
59 60 1.833049 ATCTTCTACGGCGGGGAGG 60.833 63.158 13.24 9.43 0.00 4.30
60 61 3.537874 CTTCTACGGCGGGGAGGG 61.538 72.222 13.24 2.41 0.00 4.30
61 62 4.064768 TTCTACGGCGGGGAGGGA 62.065 66.667 13.24 0.00 0.00 4.20
62 63 3.605412 TTCTACGGCGGGGAGGGAA 62.605 63.158 13.24 3.26 0.00 3.97
63 64 3.846430 CTACGGCGGGGAGGGAAC 61.846 72.222 13.24 0.00 0.00 3.62
94 95 4.329545 GCGGCAACAGGGGACAGA 62.330 66.667 0.00 0.00 0.00 3.41
95 96 2.046892 CGGCAACAGGGGACAGAG 60.047 66.667 0.00 0.00 0.00 3.35
96 97 2.360475 GGCAACAGGGGACAGAGC 60.360 66.667 0.00 0.00 0.00 4.09
97 98 2.431683 GCAACAGGGGACAGAGCA 59.568 61.111 0.00 0.00 0.00 4.26
98 99 1.673665 GCAACAGGGGACAGAGCAG 60.674 63.158 0.00 0.00 0.00 4.24
99 100 2.061220 CAACAGGGGACAGAGCAGA 58.939 57.895 0.00 0.00 0.00 4.26
100 101 0.036577 CAACAGGGGACAGAGCAGAG 60.037 60.000 0.00 0.00 0.00 3.35
101 102 1.197430 AACAGGGGACAGAGCAGAGG 61.197 60.000 0.00 0.00 0.00 3.69
102 103 1.305633 CAGGGGACAGAGCAGAGGA 60.306 63.158 0.00 0.00 0.00 3.71
103 104 1.001503 AGGGGACAGAGCAGAGGAG 59.998 63.158 0.00 0.00 0.00 3.69
104 105 1.305718 GGGGACAGAGCAGAGGAGT 60.306 63.158 0.00 0.00 0.00 3.85
105 106 1.612395 GGGGACAGAGCAGAGGAGTG 61.612 65.000 0.00 0.00 0.00 3.51
106 107 0.613292 GGGACAGAGCAGAGGAGTGA 60.613 60.000 0.00 0.00 0.00 3.41
107 108 0.817013 GGACAGAGCAGAGGAGTGAG 59.183 60.000 0.00 0.00 0.00 3.51
108 109 1.615651 GGACAGAGCAGAGGAGTGAGA 60.616 57.143 0.00 0.00 0.00 3.27
109 110 1.745087 GACAGAGCAGAGGAGTGAGAG 59.255 57.143 0.00 0.00 0.00 3.20
110 111 1.075374 ACAGAGCAGAGGAGTGAGAGT 59.925 52.381 0.00 0.00 0.00 3.24
111 112 1.473677 CAGAGCAGAGGAGTGAGAGTG 59.526 57.143 0.00 0.00 0.00 3.51
112 113 0.817013 GAGCAGAGGAGTGAGAGTGG 59.183 60.000 0.00 0.00 0.00 4.00
113 114 0.614415 AGCAGAGGAGTGAGAGTGGG 60.614 60.000 0.00 0.00 0.00 4.61
114 115 0.613292 GCAGAGGAGTGAGAGTGGGA 60.613 60.000 0.00 0.00 0.00 4.37
115 116 1.473258 CAGAGGAGTGAGAGTGGGAG 58.527 60.000 0.00 0.00 0.00 4.30
116 117 1.005332 CAGAGGAGTGAGAGTGGGAGA 59.995 57.143 0.00 0.00 0.00 3.71
117 118 1.284785 AGAGGAGTGAGAGTGGGAGAG 59.715 57.143 0.00 0.00 0.00 3.20
118 119 1.005450 GAGGAGTGAGAGTGGGAGAGT 59.995 57.143 0.00 0.00 0.00 3.24
119 120 1.181786 GGAGTGAGAGTGGGAGAGTG 58.818 60.000 0.00 0.00 0.00 3.51
120 121 1.272203 GGAGTGAGAGTGGGAGAGTGA 60.272 57.143 0.00 0.00 0.00 3.41
121 122 2.091541 GAGTGAGAGTGGGAGAGTGAG 58.908 57.143 0.00 0.00 0.00 3.51
122 123 0.530288 GTGAGAGTGGGAGAGTGAGC 59.470 60.000 0.00 0.00 0.00 4.26
123 124 0.962855 TGAGAGTGGGAGAGTGAGCG 60.963 60.000 0.00 0.00 0.00 5.03
124 125 0.678366 GAGAGTGGGAGAGTGAGCGA 60.678 60.000 0.00 0.00 0.00 4.93
125 126 0.679640 AGAGTGGGAGAGTGAGCGAG 60.680 60.000 0.00 0.00 0.00 5.03
126 127 0.963355 GAGTGGGAGAGTGAGCGAGT 60.963 60.000 0.00 0.00 0.00 4.18
127 128 1.214062 GTGGGAGAGTGAGCGAGTG 59.786 63.158 0.00 0.00 0.00 3.51
128 129 1.979155 TGGGAGAGTGAGCGAGTGG 60.979 63.158 0.00 0.00 0.00 4.00
129 130 1.679305 GGGAGAGTGAGCGAGTGGA 60.679 63.158 0.00 0.00 0.00 4.02
130 131 1.662438 GGGAGAGTGAGCGAGTGGAG 61.662 65.000 0.00 0.00 0.00 3.86
131 132 0.963355 GGAGAGTGAGCGAGTGGAGT 60.963 60.000 0.00 0.00 0.00 3.85
132 133 0.170116 GAGAGTGAGCGAGTGGAGTG 59.830 60.000 0.00 0.00 0.00 3.51
133 134 1.214062 GAGTGAGCGAGTGGAGTGG 59.786 63.158 0.00 0.00 0.00 4.00
134 135 1.228583 AGTGAGCGAGTGGAGTGGA 60.229 57.895 0.00 0.00 0.00 4.02
135 136 1.214062 GTGAGCGAGTGGAGTGGAG 59.786 63.158 0.00 0.00 0.00 3.86
136 137 1.228583 TGAGCGAGTGGAGTGGAGT 60.229 57.895 0.00 0.00 0.00 3.85
137 138 1.214062 GAGCGAGTGGAGTGGAGTG 59.786 63.158 0.00 0.00 0.00 3.51
138 139 1.528292 GAGCGAGTGGAGTGGAGTGT 61.528 60.000 0.00 0.00 0.00 3.55
139 140 1.373497 GCGAGTGGAGTGGAGTGTG 60.373 63.158 0.00 0.00 0.00 3.82
140 141 1.806461 GCGAGTGGAGTGGAGTGTGA 61.806 60.000 0.00 0.00 0.00 3.58
141 142 0.242286 CGAGTGGAGTGGAGTGTGAG 59.758 60.000 0.00 0.00 0.00 3.51
142 143 0.037790 GAGTGGAGTGGAGTGTGAGC 60.038 60.000 0.00 0.00 0.00 4.26
143 144 1.373497 GTGGAGTGGAGTGTGAGCG 60.373 63.158 0.00 0.00 0.00 5.03
144 145 2.262915 GGAGTGGAGTGTGAGCGG 59.737 66.667 0.00 0.00 0.00 5.52
145 146 2.433318 GAGTGGAGTGTGAGCGGC 60.433 66.667 0.00 0.00 0.00 6.53
146 147 4.363990 AGTGGAGTGTGAGCGGCG 62.364 66.667 0.51 0.51 0.00 6.46
164 165 2.936032 GGGAGTGGGGGCTCTGTT 60.936 66.667 0.00 0.00 35.89 3.16
165 166 2.539081 GGGAGTGGGGGCTCTGTTT 61.539 63.158 0.00 0.00 35.89 2.83
166 167 1.460699 GGAGTGGGGGCTCTGTTTT 59.539 57.895 0.00 0.00 35.89 2.43
167 168 0.895559 GGAGTGGGGGCTCTGTTTTG 60.896 60.000 0.00 0.00 35.89 2.44
168 169 0.178990 GAGTGGGGGCTCTGTTTTGT 60.179 55.000 0.00 0.00 32.99 2.83
169 170 1.073284 GAGTGGGGGCTCTGTTTTGTA 59.927 52.381 0.00 0.00 32.99 2.41
170 171 1.202891 AGTGGGGGCTCTGTTTTGTAC 60.203 52.381 0.00 0.00 0.00 2.90
171 172 0.111639 TGGGGGCTCTGTTTTGTACC 59.888 55.000 0.00 0.00 0.00 3.34
172 173 0.958876 GGGGGCTCTGTTTTGTACCG 60.959 60.000 0.00 0.00 0.00 4.02
173 174 0.035739 GGGGCTCTGTTTTGTACCGA 59.964 55.000 0.00 0.00 0.00 4.69
174 175 1.154197 GGGCTCTGTTTTGTACCGAC 58.846 55.000 0.00 0.00 0.00 4.79
175 176 1.541670 GGGCTCTGTTTTGTACCGACA 60.542 52.381 0.00 0.00 0.00 4.35
176 177 1.798813 GGCTCTGTTTTGTACCGACAG 59.201 52.381 11.88 11.88 41.57 3.51
177 178 1.194772 GCTCTGTTTTGTACCGACAGC 59.805 52.381 12.82 3.44 40.36 4.40
178 179 1.798813 CTCTGTTTTGTACCGACAGCC 59.201 52.381 12.82 0.00 40.36 4.85
179 180 0.872388 CTGTTTTGTACCGACAGCCC 59.128 55.000 7.24 0.00 36.76 5.19
180 181 0.180642 TGTTTTGTACCGACAGCCCA 59.819 50.000 0.00 0.00 36.76 5.36
181 182 1.310904 GTTTTGTACCGACAGCCCAA 58.689 50.000 0.00 0.00 36.76 4.12
182 183 1.677052 GTTTTGTACCGACAGCCCAAA 59.323 47.619 0.00 0.00 36.76 3.28
183 184 2.279935 TTTGTACCGACAGCCCAAAT 57.720 45.000 0.00 0.00 36.76 2.32
184 185 1.529226 TTGTACCGACAGCCCAAATG 58.471 50.000 0.00 0.00 36.76 2.32
185 186 0.322098 TGTACCGACAGCCCAAATGG 60.322 55.000 0.00 0.00 37.09 3.16
194 195 2.969827 CCCAAATGGCCGTCAACC 59.030 61.111 0.00 0.00 0.00 3.77
195 196 2.645192 CCCAAATGGCCGTCAACCC 61.645 63.158 0.00 0.00 0.00 4.11
196 197 1.905843 CCAAATGGCCGTCAACCCA 60.906 57.895 0.00 0.00 35.21 4.51
197 198 1.288752 CAAATGGCCGTCAACCCAC 59.711 57.895 0.00 0.00 33.17 4.61
198 199 1.152830 AAATGGCCGTCAACCCACT 59.847 52.632 0.00 0.00 33.17 4.00
199 200 0.893727 AAATGGCCGTCAACCCACTC 60.894 55.000 0.00 0.00 33.17 3.51
200 201 3.605749 ATGGCCGTCAACCCACTCG 62.606 63.158 0.00 0.00 33.17 4.18
204 205 4.657824 CGTCAACCCACTCGCCGT 62.658 66.667 0.00 0.00 0.00 5.68
205 206 2.737376 GTCAACCCACTCGCCGTC 60.737 66.667 0.00 0.00 0.00 4.79
206 207 2.915659 TCAACCCACTCGCCGTCT 60.916 61.111 0.00 0.00 0.00 4.18
207 208 2.738521 CAACCCACTCGCCGTCTG 60.739 66.667 0.00 0.00 0.00 3.51
208 209 4.003788 AACCCACTCGCCGTCTGG 62.004 66.667 0.00 0.00 38.77 3.86
253 254 2.436109 GGCCAGCCCTGTCAGAAA 59.564 61.111 0.00 0.00 0.00 2.52
254 255 1.000396 GGCCAGCCCTGTCAGAAAT 60.000 57.895 0.00 0.00 0.00 2.17
255 256 1.034292 GGCCAGCCCTGTCAGAAATC 61.034 60.000 0.00 0.00 0.00 2.17
256 257 1.372087 GCCAGCCCTGTCAGAAATCG 61.372 60.000 0.00 0.00 0.00 3.34
257 258 0.036010 CCAGCCCTGTCAGAAATCGT 60.036 55.000 0.00 0.00 0.00 3.73
258 259 1.081892 CAGCCCTGTCAGAAATCGTG 58.918 55.000 0.00 0.00 0.00 4.35
259 260 0.687354 AGCCCTGTCAGAAATCGTGT 59.313 50.000 0.00 0.00 0.00 4.49
260 261 1.072331 AGCCCTGTCAGAAATCGTGTT 59.928 47.619 0.00 0.00 0.00 3.32
261 262 2.301870 AGCCCTGTCAGAAATCGTGTTA 59.698 45.455 0.00 0.00 0.00 2.41
262 263 3.071479 GCCCTGTCAGAAATCGTGTTAA 58.929 45.455 0.00 0.00 0.00 2.01
263 264 3.120304 GCCCTGTCAGAAATCGTGTTAAC 60.120 47.826 0.00 0.00 0.00 2.01
264 265 4.315803 CCCTGTCAGAAATCGTGTTAACT 58.684 43.478 7.22 0.00 0.00 2.24
265 266 4.152402 CCCTGTCAGAAATCGTGTTAACTG 59.848 45.833 7.22 0.00 0.00 3.16
266 267 4.377431 CCTGTCAGAAATCGTGTTAACTGC 60.377 45.833 7.22 0.00 0.00 4.40
267 268 3.183574 TGTCAGAAATCGTGTTAACTGCG 59.816 43.478 7.22 11.34 0.00 5.18
268 269 2.734606 TCAGAAATCGTGTTAACTGCGG 59.265 45.455 18.02 0.00 0.00 5.69
269 270 1.463444 AGAAATCGTGTTAACTGCGGC 59.537 47.619 18.02 0.00 0.00 6.53
270 271 1.195900 GAAATCGTGTTAACTGCGGCA 59.804 47.619 18.02 1.29 0.00 5.69
271 272 1.231221 AATCGTGTTAACTGCGGCAA 58.769 45.000 18.02 5.01 0.00 4.52
272 273 1.231221 ATCGTGTTAACTGCGGCAAA 58.769 45.000 18.02 0.00 0.00 3.68
273 274 0.305313 TCGTGTTAACTGCGGCAAAC 59.695 50.000 18.02 6.60 0.00 2.93
274 275 0.659123 CGTGTTAACTGCGGCAAACC 60.659 55.000 12.12 4.70 0.00 3.27
285 286 3.978460 GGCAAACCGGTCATTTGTT 57.022 47.368 8.04 0.00 38.93 2.83
286 287 2.232756 GGCAAACCGGTCATTTGTTT 57.767 45.000 8.04 0.00 38.93 2.83
287 288 2.556257 GGCAAACCGGTCATTTGTTTT 58.444 42.857 8.04 0.00 38.93 2.43
288 289 2.939756 GGCAAACCGGTCATTTGTTTTT 59.060 40.909 8.04 0.00 38.93 1.94
289 290 4.120589 GGCAAACCGGTCATTTGTTTTTA 58.879 39.130 8.04 0.00 38.93 1.52
290 291 4.752604 GGCAAACCGGTCATTTGTTTTTAT 59.247 37.500 8.04 0.00 38.93 1.40
291 292 5.237561 GGCAAACCGGTCATTTGTTTTTATT 59.762 36.000 8.04 0.00 38.93 1.40
292 293 6.132724 GCAAACCGGTCATTTGTTTTTATTG 58.867 36.000 8.04 4.87 38.93 1.90
293 294 6.018669 GCAAACCGGTCATTTGTTTTTATTGA 60.019 34.615 8.04 0.00 38.93 2.57
294 295 7.563270 CAAACCGGTCATTTGTTTTTATTGAG 58.437 34.615 8.04 0.00 33.27 3.02
295 296 6.642707 ACCGGTCATTTGTTTTTATTGAGA 57.357 33.333 0.00 0.00 0.00 3.27
296 297 7.045126 ACCGGTCATTTGTTTTTATTGAGAA 57.955 32.000 0.00 0.00 0.00 2.87
297 298 7.493367 ACCGGTCATTTGTTTTTATTGAGAAA 58.507 30.769 0.00 0.00 0.00 2.52
298 299 7.982354 ACCGGTCATTTGTTTTTATTGAGAAAA 59.018 29.630 0.00 0.00 0.00 2.29
299 300 8.987890 CCGGTCATTTGTTTTTATTGAGAAAAT 58.012 29.630 0.00 0.00 0.00 1.82
316 317 9.796120 TTGAGAAAATTTACAAGTAAAGTGGTG 57.204 29.630 10.70 0.00 38.30 4.17
317 318 8.410141 TGAGAAAATTTACAAGTAAAGTGGTGG 58.590 33.333 10.70 0.00 38.30 4.61
318 319 8.528044 AGAAAATTTACAAGTAAAGTGGTGGA 57.472 30.769 10.70 0.00 38.30 4.02
319 320 9.143155 AGAAAATTTACAAGTAAAGTGGTGGAT 57.857 29.630 10.70 0.00 38.30 3.41
320 321 9.758651 GAAAATTTACAAGTAAAGTGGTGGATT 57.241 29.630 10.70 0.00 38.30 3.01
324 325 8.934507 TTTACAAGTAAAGTGGTGGATTTTTG 57.065 30.769 1.46 0.00 31.95 2.44
325 326 5.912892 ACAAGTAAAGTGGTGGATTTTTGG 58.087 37.500 0.00 0.00 0.00 3.28
326 327 5.163353 ACAAGTAAAGTGGTGGATTTTTGGG 60.163 40.000 0.00 0.00 0.00 4.12
327 328 4.810345 AGTAAAGTGGTGGATTTTTGGGA 58.190 39.130 0.00 0.00 0.00 4.37
328 329 4.587262 AGTAAAGTGGTGGATTTTTGGGAC 59.413 41.667 0.00 0.00 0.00 4.46
329 330 1.616159 AGTGGTGGATTTTTGGGACG 58.384 50.000 0.00 0.00 0.00 4.79
330 331 0.038618 GTGGTGGATTTTTGGGACGC 60.039 55.000 0.00 0.00 0.00 5.19
331 332 1.211709 GGTGGATTTTTGGGACGCG 59.788 57.895 3.53 3.53 0.00 6.01
332 333 1.443702 GTGGATTTTTGGGACGCGC 60.444 57.895 5.73 0.00 0.00 6.86
333 334 1.602323 TGGATTTTTGGGACGCGCT 60.602 52.632 5.73 0.00 0.00 5.92
334 335 0.321741 TGGATTTTTGGGACGCGCTA 60.322 50.000 5.73 0.00 0.00 4.26
335 336 0.377203 GGATTTTTGGGACGCGCTAG 59.623 55.000 5.73 0.00 0.00 3.42
336 337 1.365699 GATTTTTGGGACGCGCTAGA 58.634 50.000 5.73 0.00 0.00 2.43
337 338 1.735571 GATTTTTGGGACGCGCTAGAA 59.264 47.619 5.73 0.00 0.00 2.10
338 339 1.595466 TTTTTGGGACGCGCTAGAAA 58.405 45.000 5.73 0.00 0.00 2.52
339 340 1.816074 TTTTGGGACGCGCTAGAAAT 58.184 45.000 5.73 0.00 0.00 2.17
340 341 1.083489 TTTGGGACGCGCTAGAAATG 58.917 50.000 5.73 0.00 0.00 2.32
341 342 0.036765 TTGGGACGCGCTAGAAATGT 60.037 50.000 5.73 0.00 0.00 2.71
342 343 0.739462 TGGGACGCGCTAGAAATGTG 60.739 55.000 5.73 0.00 0.00 3.21
343 344 1.429148 GGGACGCGCTAGAAATGTGG 61.429 60.000 5.73 0.00 0.00 4.17
344 345 0.739813 GGACGCGCTAGAAATGTGGT 60.740 55.000 5.73 0.00 0.00 4.16
345 346 0.370273 GACGCGCTAGAAATGTGGTG 59.630 55.000 5.73 0.00 0.00 4.17
346 347 1.019278 ACGCGCTAGAAATGTGGTGG 61.019 55.000 5.73 0.00 0.00 4.61
347 348 1.429423 GCGCTAGAAATGTGGTGGC 59.571 57.895 0.00 0.00 0.00 5.01
348 349 1.305219 GCGCTAGAAATGTGGTGGCA 61.305 55.000 0.00 0.00 0.00 4.92
349 350 1.164411 CGCTAGAAATGTGGTGGCAA 58.836 50.000 0.00 0.00 0.00 4.52
350 351 1.745087 CGCTAGAAATGTGGTGGCAAT 59.255 47.619 0.00 0.00 0.00 3.56
351 352 2.164219 CGCTAGAAATGTGGTGGCAATT 59.836 45.455 0.00 0.00 0.00 2.32
352 353 3.514645 GCTAGAAATGTGGTGGCAATTG 58.485 45.455 0.00 0.00 0.00 2.32
353 354 3.676873 GCTAGAAATGTGGTGGCAATTGG 60.677 47.826 7.72 0.00 0.00 3.16
354 355 2.607499 AGAAATGTGGTGGCAATTGGA 58.393 42.857 7.72 0.00 0.00 3.53
355 356 3.175594 AGAAATGTGGTGGCAATTGGAT 58.824 40.909 7.72 0.00 0.00 3.41
356 357 3.055675 AGAAATGTGGTGGCAATTGGATG 60.056 43.478 7.72 0.00 0.00 3.51
357 358 0.538118 ATGTGGTGGCAATTGGATGC 59.462 50.000 7.72 0.00 45.67 3.91
358 359 0.542467 TGTGGTGGCAATTGGATGCT 60.542 50.000 7.72 0.00 45.68 3.79
359 360 0.609662 GTGGTGGCAATTGGATGCTT 59.390 50.000 7.72 0.00 45.68 3.91
360 361 0.896923 TGGTGGCAATTGGATGCTTC 59.103 50.000 7.72 0.00 45.68 3.86
361 362 0.896923 GGTGGCAATTGGATGCTTCA 59.103 50.000 7.72 0.00 45.68 3.02
362 363 1.275856 GGTGGCAATTGGATGCTTCAA 59.724 47.619 7.72 0.00 45.68 2.69
363 364 2.340337 GTGGCAATTGGATGCTTCAAC 58.660 47.619 7.72 0.00 45.68 3.18
364 365 2.028748 GTGGCAATTGGATGCTTCAACT 60.029 45.455 7.72 0.00 45.68 3.16
365 366 2.633967 TGGCAATTGGATGCTTCAACTT 59.366 40.909 7.72 0.00 45.68 2.66
366 367 3.256558 GGCAATTGGATGCTTCAACTTC 58.743 45.455 7.72 0.00 45.68 3.01
367 368 3.306225 GGCAATTGGATGCTTCAACTTCA 60.306 43.478 7.72 0.00 45.68 3.02
368 369 4.309099 GCAATTGGATGCTTCAACTTCAA 58.691 39.130 7.72 0.00 43.06 2.69
369 370 4.751098 GCAATTGGATGCTTCAACTTCAAA 59.249 37.500 7.72 0.00 43.06 2.69
370 371 5.410439 GCAATTGGATGCTTCAACTTCAAAT 59.590 36.000 7.72 0.00 43.06 2.32
371 372 6.619874 GCAATTGGATGCTTCAACTTCAAATG 60.620 38.462 7.72 1.65 43.06 2.32
372 373 5.534207 TTGGATGCTTCAACTTCAAATGT 57.466 34.783 1.64 0.00 0.00 2.71
373 374 4.873817 TGGATGCTTCAACTTCAAATGTG 58.126 39.130 1.64 0.00 0.00 3.21
374 375 4.240096 GGATGCTTCAACTTCAAATGTGG 58.760 43.478 1.64 0.00 0.00 4.17
375 376 4.262164 GGATGCTTCAACTTCAAATGTGGT 60.262 41.667 1.64 0.00 0.00 4.16
376 377 4.044336 TGCTTCAACTTCAAATGTGGTG 57.956 40.909 0.00 0.00 0.00 4.17
377 378 3.181477 TGCTTCAACTTCAAATGTGGTGG 60.181 43.478 0.00 0.00 0.00 4.61
378 379 3.181476 GCTTCAACTTCAAATGTGGTGGT 60.181 43.478 0.00 0.00 0.00 4.16
379 380 4.680440 GCTTCAACTTCAAATGTGGTGGTT 60.680 41.667 0.00 0.00 0.00 3.67
380 381 5.413309 TTCAACTTCAAATGTGGTGGTTT 57.587 34.783 0.00 0.00 0.00 3.27
381 382 5.413309 TCAACTTCAAATGTGGTGGTTTT 57.587 34.783 0.00 0.00 0.00 2.43
382 383 5.799213 TCAACTTCAAATGTGGTGGTTTTT 58.201 33.333 0.00 0.00 0.00 1.94
424 425 8.816640 AAAAGACACAACACCAATTTCATATC 57.183 30.769 0.00 0.00 0.00 1.63
431 432 6.658816 ACAACACCAATTTCATATCTACAGCA 59.341 34.615 0.00 0.00 0.00 4.41
434 435 7.709947 ACACCAATTTCATATCTACAGCATTG 58.290 34.615 0.00 0.00 0.00 2.82
561 1722 9.583765 AGTAATTTACTCGATCTTCTACAAACC 57.416 33.333 3.16 0.00 32.47 3.27
562 1723 7.845066 AATTTACTCGATCTTCTACAAACCC 57.155 36.000 0.00 0.00 0.00 4.11
660 1826 8.335532 TCTAACAAATCAAATGGGTCAAGTAG 57.664 34.615 0.00 0.00 0.00 2.57
662 1828 6.575162 ACAAATCAAATGGGTCAAGTAGTC 57.425 37.500 0.00 0.00 0.00 2.59
664 1830 6.721208 ACAAATCAAATGGGTCAAGTAGTCAT 59.279 34.615 0.00 0.00 0.00 3.06
666 1832 6.764308 ATCAAATGGGTCAAGTAGTCATTG 57.236 37.500 0.00 0.00 0.00 2.82
667 1833 5.875224 TCAAATGGGTCAAGTAGTCATTGA 58.125 37.500 0.00 0.00 34.37 2.57
668 1834 6.484288 TCAAATGGGTCAAGTAGTCATTGAT 58.516 36.000 0.00 0.00 38.81 2.57
773 1948 1.200020 GCTTGGCTGCAAATTACTCGT 59.800 47.619 0.50 0.00 0.00 4.18
776 1951 2.499197 TGGCTGCAAATTACTCGTGAA 58.501 42.857 0.50 0.00 0.00 3.18
778 1953 3.119884 TGGCTGCAAATTACTCGTGAATG 60.120 43.478 0.50 0.00 0.00 2.67
781 1956 5.258622 GCTGCAAATTACTCGTGAATGTAG 58.741 41.667 0.00 0.00 0.00 2.74
897 2072 4.564821 CCTCCACTAGCTAGCTACTAGGAG 60.565 54.167 32.13 32.13 41.22 3.69
926 2101 3.759815 AAAGTGAGCTAGGGAGTCCTA 57.240 47.619 9.58 0.00 44.38 2.94
936 2111 1.562672 GGGAGTCCTAGGCAGCCAAA 61.563 60.000 15.80 0.00 0.00 3.28
977 2156 2.037251 CGCCCTCCATAAGCTAGCTTAA 59.963 50.000 34.45 20.71 41.21 1.85
1140 2325 9.227777 GTACATACACCAAAACTAGAATTCCTT 57.772 33.333 0.65 0.00 0.00 3.36
1242 2431 8.255905 CAGGTATATATGCTCATCAAGTCATGA 58.744 37.037 0.00 0.00 43.67 3.07
1262 2451 6.723515 TCATGATGACAAACCCTAATTTTCCA 59.276 34.615 0.00 0.00 0.00 3.53
1269 2459 7.012799 TGACAAACCCTAATTTTCCATTTTTGC 59.987 33.333 0.00 0.00 0.00 3.68
1275 2465 3.778954 ATTTTCCATTTTTGCGGGGAA 57.221 38.095 0.00 0.00 37.63 3.97
1300 2490 5.249393 AGGAACTCTAATTTTCTCTCCTGCA 59.751 40.000 0.00 0.00 30.85 4.41
1301 2491 6.069731 AGGAACTCTAATTTTCTCTCCTGCAT 60.070 38.462 0.00 0.00 30.85 3.96
1302 2492 6.038050 GGAACTCTAATTTTCTCTCCTGCATG 59.962 42.308 0.00 0.00 0.00 4.06
1303 2493 4.880696 ACTCTAATTTTCTCTCCTGCATGC 59.119 41.667 11.82 11.82 0.00 4.06
1401 2591 3.071874 TCAATCTGTGGATGGGTGAAC 57.928 47.619 0.00 0.00 31.75 3.18
1687 2880 5.662211 TTTTGGTCTTACGACTTTGCTAC 57.338 39.130 0.00 0.00 40.10 3.58
1698 2892 3.645884 GACTTTGCTACTTGTCGGTGTA 58.354 45.455 0.00 0.00 0.00 2.90
1710 2904 2.599527 TGTCGGTGTATTTTCGCGTATG 59.400 45.455 5.77 0.00 0.00 2.39
1758 2952 0.034574 ATGCAAAGGCCGGATGTGTA 60.035 50.000 5.05 0.00 40.13 2.90
1767 2961 1.933853 GCCGGATGTGTACTCATTGTC 59.066 52.381 5.05 0.79 0.00 3.18
1857 3051 9.051679 CATTTCCACACATAATTTATCTCGGTA 57.948 33.333 0.00 0.00 0.00 4.02
1858 3052 9.793259 ATTTCCACACATAATTTATCTCGGTAT 57.207 29.630 0.00 0.00 0.00 2.73
1898 3092 6.044287 TCCCTAATTTCCATAGATTGCTAGCA 59.956 38.462 14.93 14.93 0.00 3.49
1900 3094 7.148120 CCCTAATTTCCATAGATTGCTAGCATG 60.148 40.741 20.13 13.24 0.00 4.06
1946 3140 7.283625 AGATTGCTAACTATCTCGACATTCT 57.716 36.000 0.00 0.00 33.80 2.40
1968 3162 5.049954 TCTGAGTTTACCGTGTTTATGTTGC 60.050 40.000 0.00 0.00 0.00 4.17
1985 3179 3.638627 TGTTGCAAATGAACATGTACCCA 59.361 39.130 0.00 0.00 0.00 4.51
2084 3278 6.961554 GTGGTCTGCTTGATAATTACTTTTCG 59.038 38.462 0.00 0.00 0.00 3.46
2164 3359 5.163591 CCATTAATCAATCTCAGTTGCAGCA 60.164 40.000 2.55 0.00 0.00 4.41
2238 3437 8.010733 AGCTGCATCTGGCTTTATAAATTAAA 57.989 30.769 1.02 0.00 45.15 1.52
2287 3487 5.699458 ACATAGGTTCGGTAACTCAAACAAG 59.301 40.000 0.00 0.00 35.81 3.16
2298 3498 7.541162 GGTAACTCAAACAAGTAAAACAAGGT 58.459 34.615 0.00 0.00 0.00 3.50
2308 3508 6.528774 ACAAGTAAAACAAGGTTAAAACGCTG 59.471 34.615 0.00 0.00 0.00 5.18
2340 3540 1.303309 GAAGGCGCATAACAGAGCAT 58.697 50.000 10.83 0.00 35.93 3.79
2341 3541 1.003116 GAAGGCGCATAACAGAGCATG 60.003 52.381 10.83 0.00 35.93 4.06
2344 3544 0.309922 GCGCATAACAGAGCATGCAT 59.690 50.000 21.98 4.82 46.32 3.96
2374 3574 2.861147 ACAAAAGGAGACTGCTACCC 57.139 50.000 0.00 0.00 42.68 3.69
2375 3575 2.339769 ACAAAAGGAGACTGCTACCCT 58.660 47.619 0.00 0.00 42.68 4.34
2376 3576 3.517612 ACAAAAGGAGACTGCTACCCTA 58.482 45.455 0.00 0.00 42.68 3.53
2377 3577 3.515901 ACAAAAGGAGACTGCTACCCTAG 59.484 47.826 0.00 0.00 42.68 3.02
2378 3578 2.463047 AAGGAGACTGCTACCCTAGG 57.537 55.000 0.06 0.06 42.68 3.02
2379 3579 0.105913 AGGAGACTGCTACCCTAGGC 60.106 60.000 2.05 0.00 41.13 3.93
2380 3580 0.397254 GGAGACTGCTACCCTAGGCA 60.397 60.000 2.05 0.00 36.94 4.75
2384 3584 4.145436 TGCTACCCTAGGCAGCAA 57.855 55.556 25.86 14.21 42.09 3.91
2385 3585 1.602237 TGCTACCCTAGGCAGCAAC 59.398 57.895 25.86 5.96 42.09 4.17
2386 3586 1.153147 GCTACCCTAGGCAGCAACC 60.153 63.158 22.35 0.00 35.35 3.77
2387 3587 1.144057 CTACCCTAGGCAGCAACCG 59.856 63.158 2.05 0.00 33.69 4.44
2388 3588 1.305465 TACCCTAGGCAGCAACCGA 60.305 57.895 2.05 0.00 33.69 4.69
2389 3589 0.905809 TACCCTAGGCAGCAACCGAA 60.906 55.000 2.05 0.00 33.69 4.30
2390 3590 1.450312 CCCTAGGCAGCAACCGAAG 60.450 63.158 2.05 0.00 33.69 3.79
2414 3614 0.107848 CTACCCTAGGCAACAACCGG 60.108 60.000 2.05 0.00 41.41 5.28
2416 3616 1.078426 CCCTAGGCAACAACCGGAG 60.078 63.158 9.46 1.96 41.41 4.63
2431 3631 2.660064 GGAGGGGAGCGTGTGATGT 61.660 63.158 0.00 0.00 0.00 3.06
2435 3635 1.298859 GGGGAGCGTGTGATGTTGTC 61.299 60.000 0.00 0.00 0.00 3.18
2486 3686 5.138125 TGCATAGCATCAATATCTCGACA 57.862 39.130 0.00 0.00 31.71 4.35
2490 3690 6.808704 GCATAGCATCAATATCTCGACACTTA 59.191 38.462 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.441901 AGAGCAGCGAGGAGGAGG 60.442 66.667 0.00 0.00 0.00 4.30
1 2 2.489275 GGAGAGCAGCGAGGAGGAG 61.489 68.421 0.00 0.00 0.00 3.69
2 3 2.441164 GGAGAGCAGCGAGGAGGA 60.441 66.667 0.00 0.00 0.00 3.71
3 4 2.441901 AGGAGAGCAGCGAGGAGG 60.442 66.667 0.00 0.00 0.00 4.30
4 5 1.447317 GAGAGGAGAGCAGCGAGGAG 61.447 65.000 0.00 0.00 0.00 3.69
5 6 1.453015 GAGAGGAGAGCAGCGAGGA 60.453 63.158 0.00 0.00 0.00 3.71
6 7 2.489275 GGAGAGGAGAGCAGCGAGG 61.489 68.421 0.00 0.00 0.00 4.63
7 8 1.108727 ATGGAGAGGAGAGCAGCGAG 61.109 60.000 0.00 0.00 0.00 5.03
8 9 1.076412 ATGGAGAGGAGAGCAGCGA 60.076 57.895 0.00 0.00 0.00 4.93
9 10 1.363443 GATGGAGAGGAGAGCAGCG 59.637 63.158 0.00 0.00 0.00 5.18
10 11 0.760189 AGGATGGAGAGGAGAGCAGC 60.760 60.000 0.00 0.00 0.00 5.25
11 12 1.688197 GAAGGATGGAGAGGAGAGCAG 59.312 57.143 0.00 0.00 0.00 4.24
12 13 1.690845 GGAAGGATGGAGAGGAGAGCA 60.691 57.143 0.00 0.00 0.00 4.26
13 14 1.047801 GGAAGGATGGAGAGGAGAGC 58.952 60.000 0.00 0.00 0.00 4.09
14 15 2.038659 GTGGAAGGATGGAGAGGAGAG 58.961 57.143 0.00 0.00 0.00 3.20
15 16 1.686428 CGTGGAAGGATGGAGAGGAGA 60.686 57.143 0.00 0.00 0.00 3.71
16 17 0.749649 CGTGGAAGGATGGAGAGGAG 59.250 60.000 0.00 0.00 0.00 3.69
17 18 0.335019 TCGTGGAAGGATGGAGAGGA 59.665 55.000 0.00 0.00 0.00 3.71
18 19 0.461961 GTCGTGGAAGGATGGAGAGG 59.538 60.000 0.00 0.00 31.14 3.69
19 20 0.101399 CGTCGTGGAAGGATGGAGAG 59.899 60.000 0.00 0.00 34.26 3.20
20 21 2.189833 CGTCGTGGAAGGATGGAGA 58.810 57.895 0.00 0.00 34.26 3.71
21 22 4.814900 CGTCGTGGAAGGATGGAG 57.185 61.111 0.00 0.00 34.26 3.86
24 25 1.153369 ATGCCGTCGTGGAAGGATG 60.153 57.895 1.66 0.00 42.00 3.51
25 26 1.144057 GATGCCGTCGTGGAAGGAT 59.856 57.895 1.66 0.00 42.00 3.24
26 27 1.541310 AAGATGCCGTCGTGGAAGGA 61.541 55.000 1.66 0.00 42.00 3.36
27 28 1.079127 AAGATGCCGTCGTGGAAGG 60.079 57.895 0.51 0.00 42.00 3.46
28 29 0.108615 AGAAGATGCCGTCGTGGAAG 60.109 55.000 0.51 0.00 42.00 3.46
29 30 1.135199 GTAGAAGATGCCGTCGTGGAA 60.135 52.381 0.51 0.00 42.00 3.53
30 31 0.454600 GTAGAAGATGCCGTCGTGGA 59.545 55.000 0.51 0.00 42.00 4.02
31 32 0.866061 CGTAGAAGATGCCGTCGTGG 60.866 60.000 0.00 0.00 42.50 4.94
32 33 0.866061 CCGTAGAAGATGCCGTCGTG 60.866 60.000 0.00 0.00 0.00 4.35
33 34 1.432251 CCGTAGAAGATGCCGTCGT 59.568 57.895 0.00 0.00 0.00 4.34
34 35 1.944676 GCCGTAGAAGATGCCGTCG 60.945 63.158 0.00 0.00 0.00 5.12
35 36 1.944676 CGCCGTAGAAGATGCCGTC 60.945 63.158 0.00 0.00 0.00 4.79
36 37 2.104331 CGCCGTAGAAGATGCCGT 59.896 61.111 0.00 0.00 0.00 5.68
37 38 2.658593 CCGCCGTAGAAGATGCCG 60.659 66.667 0.00 0.00 0.00 5.69
38 39 2.280186 CCCGCCGTAGAAGATGCC 60.280 66.667 0.00 0.00 0.00 4.40
39 40 2.280186 CCCCGCCGTAGAAGATGC 60.280 66.667 0.00 0.00 0.00 3.91
40 41 1.364171 CTCCCCGCCGTAGAAGATG 59.636 63.158 0.00 0.00 0.00 2.90
41 42 1.833049 CCTCCCCGCCGTAGAAGAT 60.833 63.158 0.00 0.00 0.00 2.40
42 43 2.441532 CCTCCCCGCCGTAGAAGA 60.442 66.667 0.00 0.00 0.00 2.87
43 44 3.537874 CCCTCCCCGCCGTAGAAG 61.538 72.222 0.00 0.00 0.00 2.85
44 45 3.605412 TTCCCTCCCCGCCGTAGAA 62.605 63.158 0.00 0.00 0.00 2.10
45 46 4.064768 TTCCCTCCCCGCCGTAGA 62.065 66.667 0.00 0.00 0.00 2.59
46 47 3.846430 GTTCCCTCCCCGCCGTAG 61.846 72.222 0.00 0.00 0.00 3.51
54 55 4.097361 GAGGCACGGTTCCCTCCC 62.097 72.222 11.70 0.00 41.42 4.30
56 57 4.452733 CGGAGGCACGGTTCCCTC 62.453 72.222 13.61 13.61 45.52 4.30
77 78 4.329545 TCTGTCCCCTGTTGCCGC 62.330 66.667 0.00 0.00 0.00 6.53
78 79 2.046892 CTCTGTCCCCTGTTGCCG 60.047 66.667 0.00 0.00 0.00 5.69
79 80 2.360475 GCTCTGTCCCCTGTTGCC 60.360 66.667 0.00 0.00 0.00 4.52
80 81 1.673665 CTGCTCTGTCCCCTGTTGC 60.674 63.158 0.00 0.00 0.00 4.17
81 82 0.036577 CTCTGCTCTGTCCCCTGTTG 60.037 60.000 0.00 0.00 0.00 3.33
82 83 1.197430 CCTCTGCTCTGTCCCCTGTT 61.197 60.000 0.00 0.00 0.00 3.16
83 84 1.611851 CCTCTGCTCTGTCCCCTGT 60.612 63.158 0.00 0.00 0.00 4.00
84 85 1.305633 TCCTCTGCTCTGTCCCCTG 60.306 63.158 0.00 0.00 0.00 4.45
85 86 1.001503 CTCCTCTGCTCTGTCCCCT 59.998 63.158 0.00 0.00 0.00 4.79
86 87 1.305718 ACTCCTCTGCTCTGTCCCC 60.306 63.158 0.00 0.00 0.00 4.81
87 88 0.613292 TCACTCCTCTGCTCTGTCCC 60.613 60.000 0.00 0.00 0.00 4.46
88 89 0.817013 CTCACTCCTCTGCTCTGTCC 59.183 60.000 0.00 0.00 0.00 4.02
89 90 1.745087 CTCTCACTCCTCTGCTCTGTC 59.255 57.143 0.00 0.00 0.00 3.51
90 91 1.075374 ACTCTCACTCCTCTGCTCTGT 59.925 52.381 0.00 0.00 0.00 3.41
91 92 1.473677 CACTCTCACTCCTCTGCTCTG 59.526 57.143 0.00 0.00 0.00 3.35
92 93 1.616725 CCACTCTCACTCCTCTGCTCT 60.617 57.143 0.00 0.00 0.00 4.09
93 94 0.817013 CCACTCTCACTCCTCTGCTC 59.183 60.000 0.00 0.00 0.00 4.26
94 95 0.614415 CCCACTCTCACTCCTCTGCT 60.614 60.000 0.00 0.00 0.00 4.24
95 96 0.613292 TCCCACTCTCACTCCTCTGC 60.613 60.000 0.00 0.00 0.00 4.26
96 97 1.005332 TCTCCCACTCTCACTCCTCTG 59.995 57.143 0.00 0.00 0.00 3.35
97 98 1.284785 CTCTCCCACTCTCACTCCTCT 59.715 57.143 0.00 0.00 0.00 3.69
98 99 1.005450 ACTCTCCCACTCTCACTCCTC 59.995 57.143 0.00 0.00 0.00 3.71
99 100 1.080638 ACTCTCCCACTCTCACTCCT 58.919 55.000 0.00 0.00 0.00 3.69
100 101 1.181786 CACTCTCCCACTCTCACTCC 58.818 60.000 0.00 0.00 0.00 3.85
101 102 2.091541 CTCACTCTCCCACTCTCACTC 58.908 57.143 0.00 0.00 0.00 3.51
102 103 1.890573 GCTCACTCTCCCACTCTCACT 60.891 57.143 0.00 0.00 0.00 3.41
103 104 0.530288 GCTCACTCTCCCACTCTCAC 59.470 60.000 0.00 0.00 0.00 3.51
104 105 0.962855 CGCTCACTCTCCCACTCTCA 60.963 60.000 0.00 0.00 0.00 3.27
105 106 0.678366 TCGCTCACTCTCCCACTCTC 60.678 60.000 0.00 0.00 0.00 3.20
106 107 0.679640 CTCGCTCACTCTCCCACTCT 60.680 60.000 0.00 0.00 0.00 3.24
107 108 0.963355 ACTCGCTCACTCTCCCACTC 60.963 60.000 0.00 0.00 0.00 3.51
108 109 1.075836 ACTCGCTCACTCTCCCACT 59.924 57.895 0.00 0.00 0.00 4.00
109 110 1.214062 CACTCGCTCACTCTCCCAC 59.786 63.158 0.00 0.00 0.00 4.61
110 111 1.979155 CCACTCGCTCACTCTCCCA 60.979 63.158 0.00 0.00 0.00 4.37
111 112 1.662438 CTCCACTCGCTCACTCTCCC 61.662 65.000 0.00 0.00 0.00 4.30
112 113 0.963355 ACTCCACTCGCTCACTCTCC 60.963 60.000 0.00 0.00 0.00 3.71
113 114 0.170116 CACTCCACTCGCTCACTCTC 59.830 60.000 0.00 0.00 0.00 3.20
114 115 1.247419 CCACTCCACTCGCTCACTCT 61.247 60.000 0.00 0.00 0.00 3.24
115 116 1.214062 CCACTCCACTCGCTCACTC 59.786 63.158 0.00 0.00 0.00 3.51
116 117 1.228583 TCCACTCCACTCGCTCACT 60.229 57.895 0.00 0.00 0.00 3.41
117 118 1.214062 CTCCACTCCACTCGCTCAC 59.786 63.158 0.00 0.00 0.00 3.51
118 119 1.228583 ACTCCACTCCACTCGCTCA 60.229 57.895 0.00 0.00 0.00 4.26
119 120 1.214062 CACTCCACTCCACTCGCTC 59.786 63.158 0.00 0.00 0.00 5.03
120 121 1.531840 ACACTCCACTCCACTCGCT 60.532 57.895 0.00 0.00 0.00 4.93
121 122 1.373497 CACACTCCACTCCACTCGC 60.373 63.158 0.00 0.00 0.00 5.03
122 123 0.242286 CTCACACTCCACTCCACTCG 59.758 60.000 0.00 0.00 0.00 4.18
123 124 0.037790 GCTCACACTCCACTCCACTC 60.038 60.000 0.00 0.00 0.00 3.51
124 125 1.810606 CGCTCACACTCCACTCCACT 61.811 60.000 0.00 0.00 0.00 4.00
125 126 1.373497 CGCTCACACTCCACTCCAC 60.373 63.158 0.00 0.00 0.00 4.02
126 127 2.574018 CCGCTCACACTCCACTCCA 61.574 63.158 0.00 0.00 0.00 3.86
127 128 2.262915 CCGCTCACACTCCACTCC 59.737 66.667 0.00 0.00 0.00 3.85
128 129 2.433318 GCCGCTCACACTCCACTC 60.433 66.667 0.00 0.00 0.00 3.51
129 130 4.363990 CGCCGCTCACACTCCACT 62.364 66.667 0.00 0.00 0.00 4.00
147 148 2.081585 AAAACAGAGCCCCCACTCCC 62.082 60.000 0.00 0.00 37.39 4.30
148 149 0.895559 CAAAACAGAGCCCCCACTCC 60.896 60.000 0.00 0.00 37.39 3.85
149 150 0.178990 ACAAAACAGAGCCCCCACTC 60.179 55.000 0.00 0.00 36.91 3.51
150 151 1.145571 TACAAAACAGAGCCCCCACT 58.854 50.000 0.00 0.00 0.00 4.00
151 152 1.244816 GTACAAAACAGAGCCCCCAC 58.755 55.000 0.00 0.00 0.00 4.61
152 153 0.111639 GGTACAAAACAGAGCCCCCA 59.888 55.000 0.00 0.00 0.00 4.96
153 154 0.958876 CGGTACAAAACAGAGCCCCC 60.959 60.000 0.00 0.00 0.00 5.40
154 155 0.035739 TCGGTACAAAACAGAGCCCC 59.964 55.000 0.00 0.00 0.00 5.80
155 156 1.154197 GTCGGTACAAAACAGAGCCC 58.846 55.000 0.00 0.00 32.63 5.19
156 157 1.798813 CTGTCGGTACAAAACAGAGCC 59.201 52.381 13.38 0.00 34.49 4.70
157 158 1.194772 GCTGTCGGTACAAAACAGAGC 59.805 52.381 19.70 7.49 34.49 4.09
158 159 1.798813 GGCTGTCGGTACAAAACAGAG 59.201 52.381 19.70 2.53 34.49 3.35
159 160 1.541670 GGGCTGTCGGTACAAAACAGA 60.542 52.381 19.70 0.00 34.49 3.41
160 161 0.872388 GGGCTGTCGGTACAAAACAG 59.128 55.000 14.01 14.01 34.49 3.16
161 162 0.180642 TGGGCTGTCGGTACAAAACA 59.819 50.000 0.00 0.00 34.49 2.83
162 163 1.310904 TTGGGCTGTCGGTACAAAAC 58.689 50.000 0.00 0.00 34.49 2.43
163 164 2.054232 TTTGGGCTGTCGGTACAAAA 57.946 45.000 0.00 0.00 34.49 2.44
164 165 1.883275 CATTTGGGCTGTCGGTACAAA 59.117 47.619 0.00 5.69 34.49 2.83
165 166 1.529226 CATTTGGGCTGTCGGTACAA 58.471 50.000 0.00 0.00 34.49 2.41
166 167 0.322098 CCATTTGGGCTGTCGGTACA 60.322 55.000 0.00 0.00 0.00 2.90
167 168 2.477880 CCATTTGGGCTGTCGGTAC 58.522 57.895 0.00 0.00 0.00 3.34
177 178 2.645192 GGGTTGACGGCCATTTGGG 61.645 63.158 2.24 0.00 40.85 4.12
178 179 1.905843 TGGGTTGACGGCCATTTGG 60.906 57.895 2.24 0.00 38.53 3.28
179 180 1.178534 AGTGGGTTGACGGCCATTTG 61.179 55.000 2.24 0.00 0.00 2.32
180 181 0.893727 GAGTGGGTTGACGGCCATTT 60.894 55.000 2.24 0.00 0.00 2.32
181 182 1.303317 GAGTGGGTTGACGGCCATT 60.303 57.895 2.24 0.00 0.00 3.16
182 183 2.351276 GAGTGGGTTGACGGCCAT 59.649 61.111 2.24 0.00 0.00 4.40
183 184 4.308458 CGAGTGGGTTGACGGCCA 62.308 66.667 2.24 0.00 0.00 5.36
188 189 2.737376 GACGGCGAGTGGGTTGAC 60.737 66.667 16.62 0.00 0.00 3.18
189 190 2.915659 AGACGGCGAGTGGGTTGA 60.916 61.111 16.62 0.00 0.00 3.18
190 191 2.738521 CAGACGGCGAGTGGGTTG 60.739 66.667 16.62 0.00 0.00 3.77
191 192 4.003788 CCAGACGGCGAGTGGGTT 62.004 66.667 16.62 0.00 0.00 4.11
236 237 1.000396 ATTTCTGACAGGGCTGGCC 60.000 57.895 13.15 13.15 37.98 5.36
237 238 1.372087 CGATTTCTGACAGGGCTGGC 61.372 60.000 1.81 0.00 39.62 4.85
238 239 0.036010 ACGATTTCTGACAGGGCTGG 60.036 55.000 1.81 0.00 34.19 4.85
239 240 1.081892 CACGATTTCTGACAGGGCTG 58.918 55.000 1.81 0.00 0.00 4.85
240 241 0.687354 ACACGATTTCTGACAGGGCT 59.313 50.000 1.81 0.00 0.00 5.19
241 242 1.523758 AACACGATTTCTGACAGGGC 58.476 50.000 1.81 0.00 0.00 5.19
242 243 4.152402 CAGTTAACACGATTTCTGACAGGG 59.848 45.833 8.61 0.00 0.00 4.45
243 244 4.377431 GCAGTTAACACGATTTCTGACAGG 60.377 45.833 8.61 0.00 0.00 4.00
244 245 4.664139 CGCAGTTAACACGATTTCTGACAG 60.664 45.833 13.89 0.00 0.00 3.51
245 246 3.183574 CGCAGTTAACACGATTTCTGACA 59.816 43.478 13.89 0.00 0.00 3.58
246 247 3.423123 CCGCAGTTAACACGATTTCTGAC 60.423 47.826 19.04 0.00 0.00 3.51
247 248 2.734606 CCGCAGTTAACACGATTTCTGA 59.265 45.455 19.04 0.00 0.00 3.27
248 249 2.724839 GCCGCAGTTAACACGATTTCTG 60.725 50.000 19.04 3.27 0.00 3.02
249 250 1.463444 GCCGCAGTTAACACGATTTCT 59.537 47.619 19.04 0.00 0.00 2.52
250 251 1.195900 TGCCGCAGTTAACACGATTTC 59.804 47.619 19.04 8.33 0.00 2.17
251 252 1.231221 TGCCGCAGTTAACACGATTT 58.769 45.000 19.04 0.00 0.00 2.17
252 253 1.231221 TTGCCGCAGTTAACACGATT 58.769 45.000 19.04 0.00 0.00 3.34
253 254 1.069500 GTTTGCCGCAGTTAACACGAT 60.069 47.619 19.04 0.00 0.00 3.73
254 255 0.305313 GTTTGCCGCAGTTAACACGA 59.695 50.000 19.04 1.51 0.00 4.35
255 256 0.659123 GGTTTGCCGCAGTTAACACG 60.659 55.000 8.61 10.92 0.00 4.49
256 257 3.173247 GGTTTGCCGCAGTTAACAC 57.827 52.632 8.61 0.00 0.00 3.32
267 268 2.232756 AAACAAATGACCGGTTTGCC 57.767 45.000 9.42 0.00 39.55 4.52
268 269 5.915812 ATAAAAACAAATGACCGGTTTGC 57.084 34.783 9.42 0.00 39.55 3.68
269 270 7.436673 TCTCAATAAAAACAAATGACCGGTTTG 59.563 33.333 9.42 12.66 41.22 2.93
270 271 7.493367 TCTCAATAAAAACAAATGACCGGTTT 58.507 30.769 9.42 0.00 36.37 3.27
271 272 7.045126 TCTCAATAAAAACAAATGACCGGTT 57.955 32.000 9.42 0.00 0.00 4.44
272 273 6.642707 TCTCAATAAAAACAAATGACCGGT 57.357 33.333 6.92 6.92 0.00 5.28
273 274 7.938563 TTTCTCAATAAAAACAAATGACCGG 57.061 32.000 0.00 0.00 0.00 5.28
290 291 9.796120 CACCACTTTACTTGTAAATTTTCTCAA 57.204 29.630 0.00 0.00 0.00 3.02
291 292 8.410141 CCACCACTTTACTTGTAAATTTTCTCA 58.590 33.333 0.00 0.00 0.00 3.27
292 293 8.626526 TCCACCACTTTACTTGTAAATTTTCTC 58.373 33.333 0.00 0.00 0.00 2.87
293 294 8.528044 TCCACCACTTTACTTGTAAATTTTCT 57.472 30.769 0.00 0.00 0.00 2.52
294 295 9.758651 AATCCACCACTTTACTTGTAAATTTTC 57.241 29.630 0.00 0.00 0.00 2.29
298 299 9.541143 CAAAAATCCACCACTTTACTTGTAAAT 57.459 29.630 6.44 0.00 0.00 1.40
299 300 7.982354 CCAAAAATCCACCACTTTACTTGTAAA 59.018 33.333 5.92 5.92 0.00 2.01
300 301 7.418025 CCCAAAAATCCACCACTTTACTTGTAA 60.418 37.037 0.00 0.00 0.00 2.41
301 302 6.041069 CCCAAAAATCCACCACTTTACTTGTA 59.959 38.462 0.00 0.00 0.00 2.41
302 303 5.163353 CCCAAAAATCCACCACTTTACTTGT 60.163 40.000 0.00 0.00 0.00 3.16
303 304 5.069781 TCCCAAAAATCCACCACTTTACTTG 59.930 40.000 0.00 0.00 0.00 3.16
304 305 5.069914 GTCCCAAAAATCCACCACTTTACTT 59.930 40.000 0.00 0.00 0.00 2.24
305 306 4.587262 GTCCCAAAAATCCACCACTTTACT 59.413 41.667 0.00 0.00 0.00 2.24
306 307 4.557895 CGTCCCAAAAATCCACCACTTTAC 60.558 45.833 0.00 0.00 0.00 2.01
307 308 3.570550 CGTCCCAAAAATCCACCACTTTA 59.429 43.478 0.00 0.00 0.00 1.85
308 309 2.364002 CGTCCCAAAAATCCACCACTTT 59.636 45.455 0.00 0.00 0.00 2.66
309 310 1.960689 CGTCCCAAAAATCCACCACTT 59.039 47.619 0.00 0.00 0.00 3.16
310 311 1.616159 CGTCCCAAAAATCCACCACT 58.384 50.000 0.00 0.00 0.00 4.00
311 312 0.038618 GCGTCCCAAAAATCCACCAC 60.039 55.000 0.00 0.00 0.00 4.16
312 313 1.519751 CGCGTCCCAAAAATCCACCA 61.520 55.000 0.00 0.00 0.00 4.17
313 314 1.211709 CGCGTCCCAAAAATCCACC 59.788 57.895 0.00 0.00 0.00 4.61
314 315 1.443702 GCGCGTCCCAAAAATCCAC 60.444 57.895 8.43 0.00 0.00 4.02
315 316 0.321741 TAGCGCGTCCCAAAAATCCA 60.322 50.000 8.43 0.00 0.00 3.41
316 317 0.377203 CTAGCGCGTCCCAAAAATCC 59.623 55.000 8.43 0.00 0.00 3.01
317 318 1.365699 TCTAGCGCGTCCCAAAAATC 58.634 50.000 8.43 0.00 0.00 2.17
318 319 1.816074 TTCTAGCGCGTCCCAAAAAT 58.184 45.000 8.43 0.00 0.00 1.82
319 320 1.595466 TTTCTAGCGCGTCCCAAAAA 58.405 45.000 8.43 0.00 0.00 1.94
320 321 1.466950 CATTTCTAGCGCGTCCCAAAA 59.533 47.619 8.43 3.13 0.00 2.44
321 322 1.083489 CATTTCTAGCGCGTCCCAAA 58.917 50.000 8.43 2.83 0.00 3.28
322 323 0.036765 ACATTTCTAGCGCGTCCCAA 60.037 50.000 8.43 0.00 0.00 4.12
323 324 0.739462 CACATTTCTAGCGCGTCCCA 60.739 55.000 8.43 0.00 0.00 4.37
324 325 1.429148 CCACATTTCTAGCGCGTCCC 61.429 60.000 8.43 0.00 0.00 4.46
325 326 0.739813 ACCACATTTCTAGCGCGTCC 60.740 55.000 8.43 0.00 0.00 4.79
326 327 0.370273 CACCACATTTCTAGCGCGTC 59.630 55.000 8.43 0.00 0.00 5.19
327 328 1.019278 CCACCACATTTCTAGCGCGT 61.019 55.000 8.43 0.00 0.00 6.01
328 329 1.715585 CCACCACATTTCTAGCGCG 59.284 57.895 0.00 0.00 0.00 6.86
329 330 1.305219 TGCCACCACATTTCTAGCGC 61.305 55.000 0.00 0.00 0.00 5.92
330 331 1.164411 TTGCCACCACATTTCTAGCG 58.836 50.000 0.00 0.00 0.00 4.26
331 332 3.514645 CAATTGCCACCACATTTCTAGC 58.485 45.455 0.00 0.00 0.00 3.42
332 333 3.763360 TCCAATTGCCACCACATTTCTAG 59.237 43.478 0.00 0.00 0.00 2.43
333 334 3.772387 TCCAATTGCCACCACATTTCTA 58.228 40.909 0.00 0.00 0.00 2.10
334 335 2.607499 TCCAATTGCCACCACATTTCT 58.393 42.857 0.00 0.00 0.00 2.52
335 336 3.264104 CATCCAATTGCCACCACATTTC 58.736 45.455 0.00 0.00 0.00 2.17
336 337 2.616001 GCATCCAATTGCCACCACATTT 60.616 45.455 0.00 0.00 36.60 2.32
337 338 1.065998 GCATCCAATTGCCACCACATT 60.066 47.619 0.00 0.00 36.60 2.71
338 339 0.538118 GCATCCAATTGCCACCACAT 59.462 50.000 0.00 0.00 36.60 3.21
339 340 0.542467 AGCATCCAATTGCCACCACA 60.542 50.000 0.00 0.00 43.83 4.17
340 341 0.609662 AAGCATCCAATTGCCACCAC 59.390 50.000 0.00 0.00 43.83 4.16
341 342 0.896923 GAAGCATCCAATTGCCACCA 59.103 50.000 0.00 0.00 43.83 4.17
342 343 0.896923 TGAAGCATCCAATTGCCACC 59.103 50.000 0.00 0.00 43.83 4.61
343 344 2.028748 AGTTGAAGCATCCAATTGCCAC 60.029 45.455 0.00 0.00 43.83 5.01
344 345 2.250031 AGTTGAAGCATCCAATTGCCA 58.750 42.857 0.00 0.00 43.83 4.92
345 346 3.256558 GAAGTTGAAGCATCCAATTGCC 58.743 45.455 0.00 0.00 43.83 4.52
346 347 3.916761 TGAAGTTGAAGCATCCAATTGC 58.083 40.909 0.00 0.00 43.09 3.56
347 348 6.425721 ACATTTGAAGTTGAAGCATCCAATTG 59.574 34.615 0.00 0.00 0.00 2.32
348 349 6.425721 CACATTTGAAGTTGAAGCATCCAATT 59.574 34.615 0.00 0.00 0.00 2.32
349 350 5.929992 CACATTTGAAGTTGAAGCATCCAAT 59.070 36.000 0.00 0.00 0.00 3.16
350 351 5.291178 CACATTTGAAGTTGAAGCATCCAA 58.709 37.500 0.00 0.00 0.00 3.53
351 352 4.262121 CCACATTTGAAGTTGAAGCATCCA 60.262 41.667 0.00 0.00 0.00 3.41
352 353 4.240096 CCACATTTGAAGTTGAAGCATCC 58.760 43.478 0.00 0.00 0.00 3.51
353 354 4.682860 CACCACATTTGAAGTTGAAGCATC 59.317 41.667 0.00 0.00 0.00 3.91
354 355 4.501915 CCACCACATTTGAAGTTGAAGCAT 60.502 41.667 0.00 0.00 0.00 3.79
355 356 3.181477 CCACCACATTTGAAGTTGAAGCA 60.181 43.478 0.00 0.00 0.00 3.91
356 357 3.181476 ACCACCACATTTGAAGTTGAAGC 60.181 43.478 0.00 0.00 0.00 3.86
357 358 4.654091 ACCACCACATTTGAAGTTGAAG 57.346 40.909 0.00 0.00 0.00 3.02
358 359 5.413309 AAACCACCACATTTGAAGTTGAA 57.587 34.783 0.00 0.00 0.00 2.69
359 360 5.413309 AAAACCACCACATTTGAAGTTGA 57.587 34.783 0.00 0.00 0.00 3.18
379 380 7.064490 GTCTTTTTGAGGAGTGAATTGCAAAAA 59.936 33.333 1.71 0.00 40.65 1.94
380 381 6.534793 GTCTTTTTGAGGAGTGAATTGCAAAA 59.465 34.615 1.71 0.00 34.56 2.44
381 382 6.042143 GTCTTTTTGAGGAGTGAATTGCAAA 58.958 36.000 1.71 0.00 0.00 3.68
382 383 5.126869 TGTCTTTTTGAGGAGTGAATTGCAA 59.873 36.000 0.00 0.00 0.00 4.08
383 384 4.644234 TGTCTTTTTGAGGAGTGAATTGCA 59.356 37.500 0.00 0.00 0.00 4.08
384 385 4.978580 GTGTCTTTTTGAGGAGTGAATTGC 59.021 41.667 0.00 0.00 0.00 3.56
385 386 6.135290 TGTGTCTTTTTGAGGAGTGAATTG 57.865 37.500 0.00 0.00 0.00 2.32
386 387 6.152661 TGTTGTGTCTTTTTGAGGAGTGAATT 59.847 34.615 0.00 0.00 0.00 2.17
387 388 5.652014 TGTTGTGTCTTTTTGAGGAGTGAAT 59.348 36.000 0.00 0.00 0.00 2.57
388 389 5.007034 TGTTGTGTCTTTTTGAGGAGTGAA 58.993 37.500 0.00 0.00 0.00 3.18
389 390 4.394920 GTGTTGTGTCTTTTTGAGGAGTGA 59.605 41.667 0.00 0.00 0.00 3.41
390 391 4.438744 GGTGTTGTGTCTTTTTGAGGAGTG 60.439 45.833 0.00 0.00 0.00 3.51
391 392 3.694566 GGTGTTGTGTCTTTTTGAGGAGT 59.305 43.478 0.00 0.00 0.00 3.85
392 393 3.694072 TGGTGTTGTGTCTTTTTGAGGAG 59.306 43.478 0.00 0.00 0.00 3.69
393 394 3.691575 TGGTGTTGTGTCTTTTTGAGGA 58.308 40.909 0.00 0.00 0.00 3.71
394 395 4.448537 TTGGTGTTGTGTCTTTTTGAGG 57.551 40.909 0.00 0.00 0.00 3.86
424 425 4.097437 AGCATGAAATGGACAATGCTGTAG 59.903 41.667 8.12 0.00 46.86 2.74
431 432 3.705051 AGTGGAGCATGAAATGGACAAT 58.295 40.909 0.00 0.00 46.86 2.71
434 435 5.415701 TCTTTTAGTGGAGCATGAAATGGAC 59.584 40.000 0.00 0.00 46.86 4.02
631 1797 7.214467 TGACCCATTTGATTTGTTAGAGAAC 57.786 36.000 0.00 0.00 36.00 3.01
635 1801 7.942341 ACTACTTGACCCATTTGATTTGTTAGA 59.058 33.333 0.00 0.00 0.00 2.10
636 1802 8.110860 ACTACTTGACCCATTTGATTTGTTAG 57.889 34.615 0.00 0.00 0.00 2.34
645 1811 6.764308 ATCAATGACTACTTGACCCATTTG 57.236 37.500 0.00 0.00 35.57 2.32
653 1819 9.591792 CATTCTGTTCTATCAATGACTACTTGA 57.408 33.333 0.00 0.00 37.06 3.02
660 1826 6.484540 CACTGCATTCTGTTCTATCAATGAC 58.515 40.000 0.00 0.00 0.00 3.06
662 1828 5.066117 AGCACTGCATTCTGTTCTATCAATG 59.934 40.000 3.30 0.00 0.00 2.82
664 1830 4.582869 AGCACTGCATTCTGTTCTATCAA 58.417 39.130 3.30 0.00 0.00 2.57
666 1832 5.106396 ACAAAGCACTGCATTCTGTTCTATC 60.106 40.000 3.30 0.00 0.00 2.08
667 1833 4.763793 ACAAAGCACTGCATTCTGTTCTAT 59.236 37.500 3.30 0.00 0.00 1.98
668 1834 4.023792 CACAAAGCACTGCATTCTGTTCTA 60.024 41.667 3.30 0.00 0.00 2.10
760 1935 4.634004 CCCTACATTCACGAGTAATTTGCA 59.366 41.667 0.00 0.00 0.00 4.08
897 2072 8.009622 ACTCCCTAGCTCACTTTAAATACTAC 57.990 38.462 0.00 0.00 0.00 2.73
1123 2308 4.950475 GGGGAGAAGGAATTCTAGTTTTGG 59.050 45.833 5.23 0.00 0.00 3.28
1140 2325 0.470080 CCTTCATCGCCTAGGGGAGA 60.470 60.000 29.85 23.24 45.04 3.71
1210 2399 6.814043 TGATGAGCATATATACCTGAGATGC 58.186 40.000 0.00 0.00 42.57 3.91
1242 2431 9.065798 CAAAAATGGAAAATTAGGGTTTGTCAT 57.934 29.630 0.00 0.00 0.00 3.06
1246 2435 6.369799 CGCAAAAATGGAAAATTAGGGTTTG 58.630 36.000 0.00 0.00 0.00 2.93
1251 2440 3.938334 CCCCGCAAAAATGGAAAATTAGG 59.062 43.478 0.00 0.00 0.00 2.69
1259 2448 0.972883 CCTTTCCCCGCAAAAATGGA 59.027 50.000 0.00 0.00 0.00 3.41
1262 2451 2.299013 GAGTTCCTTTCCCCGCAAAAAT 59.701 45.455 0.00 0.00 0.00 1.82
1269 2459 5.254115 AGAAAATTAGAGTTCCTTTCCCCG 58.746 41.667 0.00 0.00 0.00 5.73
1275 2465 6.176896 GCAGGAGAGAAAATTAGAGTTCCTT 58.823 40.000 0.00 0.00 31.71 3.36
1300 2490 5.666969 TTATAAATTAAGCTCGCGTGCAT 57.333 34.783 31.73 23.89 34.99 3.96
1301 2491 5.439828 CATTATAAATTAAGCTCGCGTGCA 58.560 37.500 31.73 14.45 34.99 4.57
1302 2492 4.846137 CCATTATAAATTAAGCTCGCGTGC 59.154 41.667 24.56 24.56 0.00 5.34
1303 2493 5.049680 ACCCATTATAAATTAAGCTCGCGTG 60.050 40.000 5.77 4.44 0.00 5.34
1401 2591 3.958704 TCGTGCAACAACCAAACATTAG 58.041 40.909 0.00 0.00 35.74 1.73
1687 2880 1.458064 ACGCGAAAATACACCGACAAG 59.542 47.619 15.93 0.00 0.00 3.16
1698 2892 4.142773 CCAACCTAACACATACGCGAAAAT 60.143 41.667 15.93 0.00 0.00 1.82
1710 2904 1.574428 CACGCAGCCAACCTAACAC 59.426 57.895 0.00 0.00 0.00 3.32
1758 2952 8.311395 TCAAGAAGATACATAGGACAATGAGT 57.689 34.615 0.00 0.00 0.00 3.41
1767 2961 8.618702 AATGAAGCATCAAGAAGATACATAGG 57.381 34.615 0.00 0.00 39.49 2.57
1831 3025 7.930217 ACCGAGATAAATTATGTGTGGAAATG 58.070 34.615 5.41 0.00 0.00 2.32
1832 3026 9.793259 ATACCGAGATAAATTATGTGTGGAAAT 57.207 29.630 5.41 0.00 0.00 2.17
1838 3032 7.327761 GCACGTATACCGAGATAAATTATGTGT 59.672 37.037 0.00 0.00 40.70 3.72
1850 3044 3.119955 GCATATGAGCACGTATACCGAGA 60.120 47.826 6.97 0.00 40.70 4.04
1857 3051 2.251818 AGGGAGCATATGAGCACGTAT 58.748 47.619 6.97 0.00 36.85 3.06
1858 3052 1.704641 AGGGAGCATATGAGCACGTA 58.295 50.000 6.97 0.00 36.85 3.57
1898 3092 8.829746 TCTATGGAAATTACCTCATATGAGCAT 58.170 33.333 24.81 20.19 40.75 3.79
1900 3094 9.678260 AATCTATGGAAATTACCTCATATGAGC 57.322 33.333 24.81 10.73 40.75 4.26
1931 3125 6.458478 CGGTAAACTCAGAATGTCGAGATAGT 60.458 42.308 0.00 0.00 37.40 2.12
1946 3140 4.575236 TGCAACATAAACACGGTAAACTCA 59.425 37.500 0.00 0.00 0.00 3.41
1968 3162 5.703978 TCAAGTGGGTACATGTTCATTTG 57.296 39.130 2.30 13.16 0.00 2.32
1985 3179 5.702670 ACAAACGAGAACATCATCATCAAGT 59.297 36.000 0.00 0.00 0.00 3.16
2084 3278 6.922957 TGATTTGTTGGCTTGTTGTATCTTTC 59.077 34.615 0.00 0.00 0.00 2.62
2135 3330 7.828717 TGCAACTGAGATTGATTAATGGAACTA 59.171 33.333 0.00 0.00 0.00 2.24
2164 3359 0.178938 TCATTGTGGCCATGTGGGTT 60.179 50.000 9.72 0.00 39.65 4.11
2254 3453 1.737793 CCGAACCTATGTCACTTTGCC 59.262 52.381 0.00 0.00 0.00 4.52
2287 3487 4.741185 CCCAGCGTTTTAACCTTGTTTTAC 59.259 41.667 0.00 0.00 0.00 2.01
2298 3498 2.438411 CCATGTACCCCAGCGTTTTAA 58.562 47.619 0.00 0.00 0.00 1.52
2308 3508 2.192175 CCTTCGGCCATGTACCCC 59.808 66.667 2.24 0.00 0.00 4.95
2340 3540 2.275134 TTTGTTCTCTCCAGCATGCA 57.725 45.000 21.98 0.00 31.97 3.96
2341 3541 2.094854 CCTTTTGTTCTCTCCAGCATGC 60.095 50.000 10.51 10.51 31.97 4.06
2344 3544 2.705658 TCTCCTTTTGTTCTCTCCAGCA 59.294 45.455 0.00 0.00 0.00 4.41
2348 3548 3.070748 GCAGTCTCCTTTTGTTCTCTCC 58.929 50.000 0.00 0.00 0.00 3.71
2374 3574 1.450312 CCCTTCGGTTGCTGCCTAG 60.450 63.158 0.00 0.00 0.00 3.02
2375 3575 1.899437 CTCCCTTCGGTTGCTGCCTA 61.899 60.000 0.00 0.00 0.00 3.93
2376 3576 3.249189 TCCCTTCGGTTGCTGCCT 61.249 61.111 0.00 0.00 0.00 4.75
2377 3577 2.747855 CTCCCTTCGGTTGCTGCC 60.748 66.667 0.00 0.00 0.00 4.85
2378 3578 2.521958 TAGCTCCCTTCGGTTGCTGC 62.522 60.000 0.00 0.00 39.26 5.25
2379 3579 0.741221 GTAGCTCCCTTCGGTTGCTG 60.741 60.000 0.00 0.00 39.26 4.41
2380 3580 1.597461 GTAGCTCCCTTCGGTTGCT 59.403 57.895 0.00 0.00 40.90 3.91
2381 3581 1.449778 GGTAGCTCCCTTCGGTTGC 60.450 63.158 0.00 0.00 0.00 4.17
2382 3582 4.934989 GGTAGCTCCCTTCGGTTG 57.065 61.111 0.00 0.00 0.00 3.77
2391 3591 0.909623 TTGTTGCCTAGGGTAGCTCC 59.090 55.000 11.72 0.00 0.00 4.70
2392 3592 1.407025 GGTTGTTGCCTAGGGTAGCTC 60.407 57.143 11.72 0.00 0.00 4.09
2393 3593 0.618981 GGTTGTTGCCTAGGGTAGCT 59.381 55.000 11.72 0.00 0.00 3.32
2394 3594 0.743345 CGGTTGTTGCCTAGGGTAGC 60.743 60.000 11.72 0.00 0.00 3.58
2395 3595 0.107848 CCGGTTGTTGCCTAGGGTAG 60.108 60.000 11.72 0.00 0.00 3.18
2396 3596 0.544833 TCCGGTTGTTGCCTAGGGTA 60.545 55.000 11.72 0.00 0.00 3.69
2397 3597 1.838073 CTCCGGTTGTTGCCTAGGGT 61.838 60.000 11.72 0.00 0.00 4.34
2398 3598 1.078426 CTCCGGTTGTTGCCTAGGG 60.078 63.158 11.72 0.00 0.00 3.53
2399 3599 1.078426 CCTCCGGTTGTTGCCTAGG 60.078 63.158 3.67 3.67 0.00 3.02
2400 3600 1.078426 CCCTCCGGTTGTTGCCTAG 60.078 63.158 0.00 0.00 0.00 3.02
2414 3614 1.021390 CAACATCACACGCTCCCCTC 61.021 60.000 0.00 0.00 0.00 4.30
2416 3616 1.298859 GACAACATCACACGCTCCCC 61.299 60.000 0.00 0.00 0.00 4.81
2478 3678 3.104512 TCCATTGGGTAAGTGTCGAGAT 58.895 45.455 2.09 0.00 34.93 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.