Multiple sequence alignment - TraesCS5D01G433300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G433300 chr5D 100.000 2548 0 0 1 2548 489168346 489165799 0.000000e+00 4706.0
1 TraesCS5D01G433300 chr5D 92.562 1452 37 22 873 2300 489013887 489012483 0.000000e+00 2017.0
2 TraesCS5D01G433300 chr5D 88.215 577 40 15 1209 1780 488938451 488937898 0.000000e+00 664.0
3 TraesCS5D01G433300 chr5D 87.683 341 25 11 881 1205 488941582 488941243 5.140000e-102 381.0
4 TraesCS5D01G433300 chr5D 96.535 202 7 0 2347 2548 489009616 489009415 4.060000e-88 335.0
5 TraesCS5D01G433300 chr5D 84.689 209 28 4 361 567 94785020 94785226 3.320000e-49 206.0
6 TraesCS5D01G433300 chr5D 92.500 120 6 2 2242 2359 489012487 489012369 4.360000e-38 169.0
7 TraesCS5D01G433300 chr5D 96.774 62 2 0 1 62 351556140 351556201 1.250000e-18 104.0
8 TraesCS5D01G433300 chr5B 91.028 914 54 12 873 1778 602484251 602483358 0.000000e+00 1208.0
9 TraesCS5D01G433300 chr5B 89.095 972 61 18 873 1832 602649435 602648497 0.000000e+00 1166.0
10 TraesCS5D01G433300 chr5B 92.123 292 22 1 578 868 557797335 557797044 6.560000e-111 411.0
11 TraesCS5D01G433300 chr5B 83.544 158 21 4 2083 2235 665542056 665541899 2.640000e-30 143.0
12 TraesCS5D01G433300 chr5B 95.238 63 3 0 1 63 220546356 220546418 1.610000e-17 100.0
13 TraesCS5D01G433300 chr5B 93.333 60 3 1 1824 1883 602636879 602636821 1.260000e-13 87.9
14 TraesCS5D01G433300 chr5A 87.100 876 53 32 873 1730 610079181 610078348 0.000000e+00 937.0
15 TraesCS5D01G433300 chr5A 86.795 886 58 30 873 1732 610185742 610184890 0.000000e+00 933.0
16 TraesCS5D01G433300 chr5A 93.080 289 18 2 579 865 546794066 546793778 3.030000e-114 422.0
17 TraesCS5D01G433300 chr5A 83.406 229 30 6 342 567 173965464 173965687 3.320000e-49 206.0
18 TraesCS5D01G433300 chr5A 92.537 67 4 1 1 67 459719461 459719396 7.500000e-16 95.3
19 TraesCS5D01G433300 chrUn 92.745 510 33 3 59 568 292816333 292815828 0.000000e+00 734.0
20 TraesCS5D01G433300 chrUn 92.353 510 35 3 59 568 201618039 201618544 0.000000e+00 723.0
21 TraesCS5D01G433300 chrUn 91.765 510 38 3 59 568 201628390 201628895 0.000000e+00 706.0
22 TraesCS5D01G433300 chrUn 86.319 307 38 3 59 364 327793313 327793010 5.250000e-87 331.0
23 TraesCS5D01G433300 chrUn 80.198 303 46 11 1268 1569 76961192 76961481 5.520000e-52 215.0
24 TraesCS5D01G433300 chrUn 84.768 151 16 4 2056 2200 231478482 231478631 7.350000e-31 145.0
25 TraesCS5D01G433300 chr3A 89.020 510 41 3 59 567 93330872 93331367 3.600000e-173 617.0
26 TraesCS5D01G433300 chr3A 92.568 296 21 1 575 869 65362941 65362646 8.430000e-115 424.0
27 TraesCS5D01G433300 chr3A 92.708 288 19 2 580 865 370233077 370232790 5.070000e-112 414.0
28 TraesCS5D01G433300 chr3A 83.962 212 26 6 360 568 290545807 290545601 2.000000e-46 196.0
29 TraesCS5D01G433300 chr3A 83.491 212 27 6 360 568 290545273 290545067 9.300000e-45 191.0
30 TraesCS5D01G433300 chr2D 94.099 322 19 0 59 380 628604247 628604568 8.190000e-135 490.0
31 TraesCS5D01G433300 chr2D 92.491 293 21 1 577 868 410179214 410178922 3.920000e-113 418.0
32 TraesCS5D01G433300 chr2D 95.385 65 3 0 1 65 27835004 27835068 1.250000e-18 104.0
33 TraesCS5D01G433300 chr2D 93.750 64 3 1 1 63 644149852 644149789 7.500000e-16 95.3
34 TraesCS5D01G433300 chr3D 90.520 327 25 1 59 379 80631129 80630803 6.510000e-116 427.0
35 TraesCS5D01G433300 chr3D 84.906 159 17 6 2083 2235 590219509 590219666 1.220000e-33 154.0
36 TraesCS5D01G433300 chr3D 95.082 61 3 0 1 61 6667378 6667438 2.090000e-16 97.1
37 TraesCS5D01G433300 chr2A 92.466 292 21 1 579 869 685744209 685744500 1.410000e-112 416.0
38 TraesCS5D01G433300 chr3B 92.708 288 19 2 580 865 113928351 113928638 5.070000e-112 414.0
39 TraesCS5D01G433300 chr3B 85.526 152 16 3 2055 2200 795999819 795999668 1.220000e-33 154.0
40 TraesCS5D01G433300 chr4D 92.388 289 21 1 578 865 499689610 499689898 6.560000e-111 411.0
41 TraesCS5D01G433300 chr4A 91.837 294 23 1 578 870 535032938 535033231 2.360000e-110 409.0
42 TraesCS5D01G433300 chr4A 87.622 307 34 3 59 364 707185690 707185993 1.120000e-93 353.0
43 TraesCS5D01G433300 chr4A 85.993 307 39 3 59 364 707213281 707213584 2.440000e-85 326.0
44 TraesCS5D01G433300 chr4A 81.675 191 25 5 2055 2235 625382348 625382158 1.580000e-32 150.0
45 TraesCS5D01G433300 chr4A 81.152 191 26 5 2055 2235 625376098 625375908 7.350000e-31 145.0
46 TraesCS5D01G433300 chr4A 80.311 193 26 7 2055 2235 522296369 522296561 4.420000e-28 135.0
47 TraesCS5D01G433300 chr6B 83.243 370 56 6 199 567 128195049 128195413 4.060000e-88 335.0
48 TraesCS5D01G433300 chr6B 77.258 299 38 22 1276 1550 658515666 658515958 5.680000e-32 148.0
49 TraesCS5D01G433300 chr6B 77.076 301 35 28 1276 1550 658477730 658478022 2.640000e-30 143.0
50 TraesCS5D01G433300 chr6B 77.076 301 35 28 1276 1550 658496515 658496807 2.640000e-30 143.0
51 TraesCS5D01G433300 chr6A 80.892 314 30 8 1268 1569 31584032 31583737 1.190000e-53 220.0
52 TraesCS5D01G433300 chr6A 79.930 284 39 14 1276 1550 582516808 582517082 2.590000e-45 193.0
53 TraesCS5D01G433300 chr6A 76.490 302 38 21 1276 1550 582631044 582630749 1.590000e-27 134.0
54 TraesCS5D01G433300 chr7D 82.723 191 23 6 2055 2235 477837179 477836989 7.300000e-36 161.0
55 TraesCS5D01G433300 chr7D 93.651 63 4 0 1 63 489012696 489012634 7.500000e-16 95.3
56 TraesCS5D01G433300 chr7D 88.889 72 8 0 1 72 604890358 604890287 3.490000e-14 89.8
57 TraesCS5D01G433300 chr7D 100.000 33 0 0 2001 2033 562938296 562938264 7.610000e-06 62.1
58 TraesCS5D01G433300 chr7A 80.526 190 26 7 2055 2234 641974429 641974241 4.420000e-28 135.0
59 TraesCS5D01G433300 chr7A 92.208 77 3 3 1 77 513544359 513544432 3.470000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G433300 chr5D 489165799 489168346 2547 True 4706.000000 4706 100.000000 1 2548 1 chr5D.!!$R1 2547
1 TraesCS5D01G433300 chr5D 489009415 489013887 4472 True 840.333333 2017 93.865667 873 2548 3 chr5D.!!$R3 1675
2 TraesCS5D01G433300 chr5D 488937898 488941582 3684 True 522.500000 664 87.949000 881 1780 2 chr5D.!!$R2 899
3 TraesCS5D01G433300 chr5B 602483358 602484251 893 True 1208.000000 1208 91.028000 873 1778 1 chr5B.!!$R2 905
4 TraesCS5D01G433300 chr5B 602648497 602649435 938 True 1166.000000 1166 89.095000 873 1832 1 chr5B.!!$R4 959
5 TraesCS5D01G433300 chr5A 610078348 610079181 833 True 937.000000 937 87.100000 873 1730 1 chr5A.!!$R3 857
6 TraesCS5D01G433300 chr5A 610184890 610185742 852 True 933.000000 933 86.795000 873 1732 1 chr5A.!!$R4 859
7 TraesCS5D01G433300 chrUn 292815828 292816333 505 True 734.000000 734 92.745000 59 568 1 chrUn.!!$R1 509
8 TraesCS5D01G433300 chrUn 201618039 201618544 505 False 723.000000 723 92.353000 59 568 1 chrUn.!!$F2 509
9 TraesCS5D01G433300 chrUn 201628390 201628895 505 False 706.000000 706 91.765000 59 568 1 chrUn.!!$F3 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
371 372 0.03831 GTAGTGCAAGGGGCCTTTCT 59.962 55.0 0.84 0.0 43.89 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2350 5293 0.179018 GGATTGCCGCACCCTTATCT 60.179 55.0 0.0 0.0 0.0 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.686587 TCCGCATGTAGTCCATAGTGG 59.313 52.381 0.00 0.00 39.43 4.00
21 22 1.686587 CCGCATGTAGTCCATAGTGGA 59.313 52.381 0.00 0.00 45.98 4.02
37 38 9.807921 TCCATAGTGGAATTTCTAAAAAGACTT 57.192 29.630 0.00 0.00 45.00 3.01
55 56 8.959705 AAAGACTTATATTTAAGAACGGAGGG 57.040 34.615 9.58 0.00 38.56 4.30
56 57 7.909485 AGACTTATATTTAAGAACGGAGGGA 57.091 36.000 9.58 0.00 38.56 4.20
57 58 7.953752 AGACTTATATTTAAGAACGGAGGGAG 58.046 38.462 9.58 0.00 38.56 4.30
79 80 4.827284 AGTATAAAACATGCATGCCCTACC 59.173 41.667 26.53 9.31 0.00 3.18
86 87 1.806496 TGCATGCCCTACCTAGATGT 58.194 50.000 16.68 0.00 0.00 3.06
90 91 2.848678 TGCCCTACCTAGATGTGAGT 57.151 50.000 0.00 0.00 0.00 3.41
92 93 4.471078 TGCCCTACCTAGATGTGAGTAT 57.529 45.455 0.00 0.00 0.00 2.12
176 177 1.358877 GCCGCATCATTTTTGGTTCC 58.641 50.000 0.00 0.00 0.00 3.62
233 234 6.581166 GGCTTTAGTATCCTTTTTGAACAACG 59.419 38.462 0.00 0.00 0.00 4.10
234 235 6.581166 GCTTTAGTATCCTTTTTGAACAACGG 59.419 38.462 0.00 0.00 0.00 4.44
247 248 2.457366 ACAACGGAATGAGACTGGTC 57.543 50.000 0.00 0.00 0.00 4.02
298 299 2.404186 GGTCGCCGGTTTGAATCCC 61.404 63.158 1.90 0.00 0.00 3.85
300 301 4.174129 CGCCGGTTTGAATCCCGC 62.174 66.667 1.90 0.00 42.87 6.13
303 304 2.406616 CCGGTTTGAATCCCGCCTG 61.407 63.158 0.00 0.00 42.87 4.85
304 305 1.674322 CGGTTTGAATCCCGCCTGT 60.674 57.895 0.00 0.00 37.43 4.00
305 306 1.883021 GGTTTGAATCCCGCCTGTG 59.117 57.895 0.00 0.00 0.00 3.66
306 307 1.212751 GTTTGAATCCCGCCTGTGC 59.787 57.895 0.00 0.00 0.00 4.57
366 367 3.570912 TTAATAGTAGTGCAAGGGGCC 57.429 47.619 0.00 0.00 43.89 5.80
371 372 0.038310 GTAGTGCAAGGGGCCTTTCT 59.962 55.000 0.84 0.00 43.89 2.52
455 456 2.826428 ACGTGCTTATATGGCTGTCAG 58.174 47.619 0.00 0.00 0.00 3.51
464 465 2.851263 ATGGCTGTCAGACCGTTTTA 57.149 45.000 2.39 0.00 0.00 1.52
489 490 6.622427 AACACTTAGGCTTAGAGTTGGTAT 57.378 37.500 14.06 0.00 0.00 2.73
497 498 3.947834 GCTTAGAGTTGGTATTGCATGGT 59.052 43.478 0.00 0.00 0.00 3.55
553 554 2.033194 GCCGAAGTGTGGTACTGCC 61.033 63.158 0.00 0.00 40.26 4.85
568 569 2.504367 ACTGCCTTGCAATTAACTCGT 58.496 42.857 0.00 0.00 38.41 4.18
569 570 2.884639 ACTGCCTTGCAATTAACTCGTT 59.115 40.909 0.00 0.00 38.41 3.85
570 571 4.069304 ACTGCCTTGCAATTAACTCGTTA 58.931 39.130 0.00 0.00 38.41 3.18
571 572 4.083484 ACTGCCTTGCAATTAACTCGTTAC 60.083 41.667 0.00 0.00 38.41 2.50
572 573 3.815962 TGCCTTGCAATTAACTCGTTACA 59.184 39.130 0.00 0.00 34.76 2.41
573 574 4.276183 TGCCTTGCAATTAACTCGTTACAA 59.724 37.500 0.00 0.00 34.76 2.41
574 575 5.216648 GCCTTGCAATTAACTCGTTACAAA 58.783 37.500 0.00 0.00 0.00 2.83
575 576 5.342259 GCCTTGCAATTAACTCGTTACAAAG 59.658 40.000 0.00 0.00 0.00 2.77
576 577 5.342259 CCTTGCAATTAACTCGTTACAAAGC 59.658 40.000 0.00 0.00 0.00 3.51
577 578 4.789784 TGCAATTAACTCGTTACAAAGCC 58.210 39.130 0.00 0.00 0.00 4.35
578 579 4.517453 TGCAATTAACTCGTTACAAAGCCT 59.483 37.500 0.00 0.00 0.00 4.58
579 580 5.009210 TGCAATTAACTCGTTACAAAGCCTT 59.991 36.000 0.00 0.00 0.00 4.35
580 581 6.205076 TGCAATTAACTCGTTACAAAGCCTTA 59.795 34.615 0.00 0.00 0.00 2.69
581 582 7.079475 GCAATTAACTCGTTACAAAGCCTTAA 58.921 34.615 0.00 0.00 0.00 1.85
582 583 7.592164 GCAATTAACTCGTTACAAAGCCTTAAA 59.408 33.333 0.00 0.00 0.00 1.52
583 584 9.113876 CAATTAACTCGTTACAAAGCCTTAAAG 57.886 33.333 0.00 0.00 0.00 1.85
584 585 4.744136 ACTCGTTACAAAGCCTTAAAGC 57.256 40.909 0.00 0.00 0.00 3.51
585 586 4.131596 ACTCGTTACAAAGCCTTAAAGCA 58.868 39.130 0.00 0.00 34.23 3.91
586 587 4.760204 ACTCGTTACAAAGCCTTAAAGCAT 59.240 37.500 0.00 0.00 34.23 3.79
587 588 5.041951 TCGTTACAAAGCCTTAAAGCATG 57.958 39.130 0.00 0.00 34.23 4.06
588 589 4.083003 TCGTTACAAAGCCTTAAAGCATGG 60.083 41.667 0.00 0.00 34.23 3.66
589 590 4.320935 CGTTACAAAGCCTTAAAGCATGGT 60.321 41.667 0.00 0.00 34.23 3.55
590 591 5.538118 GTTACAAAGCCTTAAAGCATGGTT 58.462 37.500 3.82 3.82 34.23 3.67
591 592 6.568844 CGTTACAAAGCCTTAAAGCATGGTTA 60.569 38.462 11.15 0.00 34.23 2.85
592 593 5.799827 ACAAAGCCTTAAAGCATGGTTAA 57.200 34.783 11.15 5.18 34.23 2.01
593 594 6.358974 ACAAAGCCTTAAAGCATGGTTAAT 57.641 33.333 11.15 0.00 34.23 1.40
594 595 7.475137 ACAAAGCCTTAAAGCATGGTTAATA 57.525 32.000 11.15 0.00 34.23 0.98
595 596 7.547227 ACAAAGCCTTAAAGCATGGTTAATAG 58.453 34.615 11.15 8.33 34.23 1.73
596 597 7.178451 ACAAAGCCTTAAAGCATGGTTAATAGT 59.822 33.333 11.15 0.00 34.23 2.12
597 598 8.682710 CAAAGCCTTAAAGCATGGTTAATAGTA 58.317 33.333 11.15 0.00 34.23 1.82
598 599 8.996651 AAGCCTTAAAGCATGGTTAATAGTAT 57.003 30.769 11.15 0.00 34.23 2.12
608 609 9.490379 AGCATGGTTAATAGTATAACTAACTGC 57.510 33.333 0.00 8.22 33.89 4.40
609 610 9.490379 GCATGGTTAATAGTATAACTAACTGCT 57.510 33.333 0.00 0.00 33.89 4.24
611 612 9.998106 ATGGTTAATAGTATAACTAACTGCTGG 57.002 33.333 0.00 0.00 33.89 4.85
612 613 7.929785 TGGTTAATAGTATAACTAACTGCTGGC 59.070 37.037 0.00 0.00 33.89 4.85
613 614 8.148999 GGTTAATAGTATAACTAACTGCTGGCT 58.851 37.037 0.00 0.00 33.89 4.75
619 620 7.379750 AGTATAACTAACTGCTGGCTATAAGC 58.620 38.462 0.00 0.00 41.46 3.09
634 635 6.428385 GCTATAAGCCATTACCATGTCATC 57.572 41.667 0.00 0.00 34.48 2.92
635 636 6.176183 GCTATAAGCCATTACCATGTCATCT 58.824 40.000 0.00 0.00 34.48 2.90
636 637 7.331026 GCTATAAGCCATTACCATGTCATCTA 58.669 38.462 0.00 0.00 34.48 1.98
637 638 7.989741 GCTATAAGCCATTACCATGTCATCTAT 59.010 37.037 0.00 0.00 34.48 1.98
640 641 5.738909 AGCCATTACCATGTCATCTATAGC 58.261 41.667 0.00 0.00 0.00 2.97
641 642 4.878397 GCCATTACCATGTCATCTATAGCC 59.122 45.833 0.00 0.00 0.00 3.93
642 643 5.431765 CCATTACCATGTCATCTATAGCCC 58.568 45.833 0.00 0.00 0.00 5.19
643 644 5.045651 CCATTACCATGTCATCTATAGCCCA 60.046 44.000 0.00 0.00 0.00 5.36
644 645 6.353342 CCATTACCATGTCATCTATAGCCCAT 60.353 42.308 0.00 0.00 0.00 4.00
645 646 4.833478 ACCATGTCATCTATAGCCCATC 57.167 45.455 0.00 0.00 0.00 3.51
646 647 4.433255 ACCATGTCATCTATAGCCCATCT 58.567 43.478 0.00 0.00 0.00 2.90
647 648 4.848660 ACCATGTCATCTATAGCCCATCTT 59.151 41.667 0.00 0.00 0.00 2.40
648 649 6.025539 ACCATGTCATCTATAGCCCATCTTA 58.974 40.000 0.00 0.00 0.00 2.10
649 650 6.675746 ACCATGTCATCTATAGCCCATCTTAT 59.324 38.462 0.00 0.00 0.00 1.73
650 651 7.846311 ACCATGTCATCTATAGCCCATCTTATA 59.154 37.037 0.00 0.00 0.00 0.98
651 652 8.366401 CCATGTCATCTATAGCCCATCTTATAG 58.634 40.741 0.00 0.00 0.00 1.31
652 653 7.353414 TGTCATCTATAGCCCATCTTATAGC 57.647 40.000 0.00 0.00 0.00 2.97
653 654 6.325028 TGTCATCTATAGCCCATCTTATAGCC 59.675 42.308 0.00 0.00 0.00 3.93
654 655 6.325028 GTCATCTATAGCCCATCTTATAGCCA 59.675 42.308 0.00 0.00 0.00 4.75
655 656 6.902974 TCATCTATAGCCCATCTTATAGCCAA 59.097 38.462 0.00 0.00 0.00 4.52
656 657 7.570232 TCATCTATAGCCCATCTTATAGCCAAT 59.430 37.037 0.00 0.00 0.00 3.16
657 658 8.874156 CATCTATAGCCCATCTTATAGCCAATA 58.126 37.037 0.00 0.00 0.00 1.90
658 659 9.626840 ATCTATAGCCCATCTTATAGCCAATAT 57.373 33.333 0.00 0.00 0.00 1.28
659 660 8.874156 TCTATAGCCCATCTTATAGCCAATATG 58.126 37.037 0.00 0.00 0.00 1.78
660 661 5.786121 AGCCCATCTTATAGCCAATATGT 57.214 39.130 0.00 0.00 0.00 2.29
661 662 6.891306 AGCCCATCTTATAGCCAATATGTA 57.109 37.500 0.00 0.00 0.00 2.29
662 663 7.457380 AGCCCATCTTATAGCCAATATGTAT 57.543 36.000 0.00 0.00 0.00 2.29
663 664 8.567198 AGCCCATCTTATAGCCAATATGTATA 57.433 34.615 0.00 0.00 0.00 1.47
664 665 9.003145 AGCCCATCTTATAGCCAATATGTATAA 57.997 33.333 0.00 0.00 0.00 0.98
665 666 9.799106 GCCCATCTTATAGCCAATATGTATAAT 57.201 33.333 0.00 0.00 0.00 1.28
714 715 7.841282 TTTTTATTATGTGGTCCACCTTTCA 57.159 32.000 19.57 0.12 36.82 2.69
715 716 8.429237 TTTTTATTATGTGGTCCACCTTTCAT 57.571 30.769 19.57 8.23 36.82 2.57
716 717 8.429237 TTTTATTATGTGGTCCACCTTTCATT 57.571 30.769 19.57 0.95 36.82 2.57
717 718 8.429237 TTTATTATGTGGTCCACCTTTCATTT 57.571 30.769 19.57 0.77 36.82 2.32
718 719 6.933514 ATTATGTGGTCCACCTTTCATTTT 57.066 33.333 19.57 0.00 36.82 1.82
719 720 4.871933 ATGTGGTCCACCTTTCATTTTC 57.128 40.909 19.57 0.00 36.82 2.29
720 721 3.636679 TGTGGTCCACCTTTCATTTTCA 58.363 40.909 19.57 0.00 36.82 2.69
721 722 3.383185 TGTGGTCCACCTTTCATTTTCAC 59.617 43.478 19.57 0.00 36.82 3.18
722 723 3.383185 GTGGTCCACCTTTCATTTTCACA 59.617 43.478 11.30 0.00 36.82 3.58
723 724 4.026744 TGGTCCACCTTTCATTTTCACAA 58.973 39.130 0.00 0.00 36.82 3.33
724 725 4.467795 TGGTCCACCTTTCATTTTCACAAA 59.532 37.500 0.00 0.00 36.82 2.83
725 726 5.049828 GGTCCACCTTTCATTTTCACAAAG 58.950 41.667 0.00 0.00 0.00 2.77
726 727 5.395214 GGTCCACCTTTCATTTTCACAAAGT 60.395 40.000 0.00 0.00 0.00 2.66
727 728 5.519927 GTCCACCTTTCATTTTCACAAAGTG 59.480 40.000 0.00 0.00 34.45 3.16
728 729 4.270808 CCACCTTTCATTTTCACAAAGTGC 59.729 41.667 0.00 0.00 32.98 4.40
729 730 4.270808 CACCTTTCATTTTCACAAAGTGCC 59.729 41.667 0.00 0.00 32.98 5.01
730 731 3.809279 CCTTTCATTTTCACAAAGTGCCC 59.191 43.478 0.00 0.00 32.98 5.36
731 732 4.440880 CTTTCATTTTCACAAAGTGCCCA 58.559 39.130 0.00 0.00 32.98 5.36
732 733 3.731652 TCATTTTCACAAAGTGCCCAG 57.268 42.857 0.00 0.00 32.98 4.45
733 734 3.295093 TCATTTTCACAAAGTGCCCAGA 58.705 40.909 0.00 0.00 32.98 3.86
734 735 3.318839 TCATTTTCACAAAGTGCCCAGAG 59.681 43.478 0.00 0.00 32.98 3.35
735 736 1.032014 TTTCACAAAGTGCCCAGAGC 58.968 50.000 0.00 0.00 44.14 4.09
751 752 3.191539 GCACGTGCTAGAGCTGGC 61.192 66.667 32.55 1.87 42.66 4.85
752 753 2.575993 CACGTGCTAGAGCTGGCT 59.424 61.111 0.82 0.00 42.66 4.75
753 754 1.518133 CACGTGCTAGAGCTGGCTC 60.518 63.158 14.02 14.02 42.66 4.70
762 763 2.851798 GAGCTGGCTCTTCACCAAG 58.148 57.895 14.51 0.00 39.80 3.61
763 764 0.322975 GAGCTGGCTCTTCACCAAGA 59.677 55.000 14.51 0.00 39.80 3.02
770 771 2.456627 TCTTCACCAAGAGCCTGCT 58.543 52.632 0.00 0.00 33.38 4.24
771 772 0.767375 TCTTCACCAAGAGCCTGCTT 59.233 50.000 0.00 0.00 33.38 3.91
772 773 1.977854 TCTTCACCAAGAGCCTGCTTA 59.022 47.619 0.00 0.00 33.38 3.09
773 774 2.079925 CTTCACCAAGAGCCTGCTTAC 58.920 52.381 0.00 0.00 0.00 2.34
774 775 0.324943 TCACCAAGAGCCTGCTTACC 59.675 55.000 0.00 0.00 0.00 2.85
775 776 0.326264 CACCAAGAGCCTGCTTACCT 59.674 55.000 0.00 0.00 0.00 3.08
776 777 1.068121 ACCAAGAGCCTGCTTACCTT 58.932 50.000 0.00 0.00 0.00 3.50
777 778 1.003696 ACCAAGAGCCTGCTTACCTTC 59.996 52.381 0.00 0.00 0.00 3.46
778 779 1.280421 CCAAGAGCCTGCTTACCTTCT 59.720 52.381 0.00 0.00 0.00 2.85
779 780 2.626840 CAAGAGCCTGCTTACCTTCTC 58.373 52.381 0.00 0.00 0.00 2.87
780 781 2.235898 CAAGAGCCTGCTTACCTTCTCT 59.764 50.000 0.00 0.00 32.84 3.10
781 782 2.107366 AGAGCCTGCTTACCTTCTCTC 58.893 52.381 0.00 0.00 0.00 3.20
782 783 2.107366 GAGCCTGCTTACCTTCTCTCT 58.893 52.381 0.00 0.00 0.00 3.10
783 784 2.100749 GAGCCTGCTTACCTTCTCTCTC 59.899 54.545 0.00 0.00 0.00 3.20
784 785 2.107366 GCCTGCTTACCTTCTCTCTCT 58.893 52.381 0.00 0.00 0.00 3.10
785 786 2.499693 GCCTGCTTACCTTCTCTCTCTT 59.500 50.000 0.00 0.00 0.00 2.85
786 787 3.430236 GCCTGCTTACCTTCTCTCTCTTC 60.430 52.174 0.00 0.00 0.00 2.87
787 788 4.023291 CCTGCTTACCTTCTCTCTCTTCT 58.977 47.826 0.00 0.00 0.00 2.85
788 789 4.466015 CCTGCTTACCTTCTCTCTCTTCTT 59.534 45.833 0.00 0.00 0.00 2.52
789 790 5.046663 CCTGCTTACCTTCTCTCTCTTCTTT 60.047 44.000 0.00 0.00 0.00 2.52
790 791 6.426646 TGCTTACCTTCTCTCTCTTCTTTT 57.573 37.500 0.00 0.00 0.00 2.27
791 792 6.459923 TGCTTACCTTCTCTCTCTTCTTTTC 58.540 40.000 0.00 0.00 0.00 2.29
792 793 6.268847 TGCTTACCTTCTCTCTCTTCTTTTCT 59.731 38.462 0.00 0.00 0.00 2.52
793 794 7.158697 GCTTACCTTCTCTCTCTTCTTTTCTT 58.841 38.462 0.00 0.00 0.00 2.52
794 795 7.659799 GCTTACCTTCTCTCTCTTCTTTTCTTT 59.340 37.037 0.00 0.00 0.00 2.52
795 796 9.203421 CTTACCTTCTCTCTCTTCTTTTCTTTC 57.797 37.037 0.00 0.00 0.00 2.62
796 797 6.530120 ACCTTCTCTCTCTTCTTTTCTTTCC 58.470 40.000 0.00 0.00 0.00 3.13
797 798 6.100424 ACCTTCTCTCTCTTCTTTTCTTTCCA 59.900 38.462 0.00 0.00 0.00 3.53
798 799 6.426633 CCTTCTCTCTCTTCTTTTCTTTCCAC 59.573 42.308 0.00 0.00 0.00 4.02
799 800 5.859495 TCTCTCTCTTCTTTTCTTTCCACC 58.141 41.667 0.00 0.00 0.00 4.61
800 801 5.366768 TCTCTCTCTTCTTTTCTTTCCACCA 59.633 40.000 0.00 0.00 0.00 4.17
801 802 6.001449 TCTCTCTTCTTTTCTTTCCACCAA 57.999 37.500 0.00 0.00 0.00 3.67
802 803 5.823045 TCTCTCTTCTTTTCTTTCCACCAAC 59.177 40.000 0.00 0.00 0.00 3.77
803 804 5.755849 TCTCTTCTTTTCTTTCCACCAACT 58.244 37.500 0.00 0.00 0.00 3.16
804 805 6.187682 TCTCTTCTTTTCTTTCCACCAACTT 58.812 36.000 0.00 0.00 0.00 2.66
805 806 7.343357 TCTCTTCTTTTCTTTCCACCAACTTA 58.657 34.615 0.00 0.00 0.00 2.24
806 807 7.499232 TCTCTTCTTTTCTTTCCACCAACTTAG 59.501 37.037 0.00 0.00 0.00 2.18
807 808 5.767816 TCTTTTCTTTCCACCAACTTAGC 57.232 39.130 0.00 0.00 0.00 3.09
808 809 5.197451 TCTTTTCTTTCCACCAACTTAGCA 58.803 37.500 0.00 0.00 0.00 3.49
809 810 5.654650 TCTTTTCTTTCCACCAACTTAGCAA 59.345 36.000 0.00 0.00 0.00 3.91
810 811 5.923733 TTTCTTTCCACCAACTTAGCAAA 57.076 34.783 0.00 0.00 0.00 3.68
811 812 5.923733 TTCTTTCCACCAACTTAGCAAAA 57.076 34.783 0.00 0.00 0.00 2.44
812 813 5.923733 TCTTTCCACCAACTTAGCAAAAA 57.076 34.783 0.00 0.00 0.00 1.94
813 814 6.478512 TCTTTCCACCAACTTAGCAAAAAT 57.521 33.333 0.00 0.00 0.00 1.82
814 815 7.589958 TCTTTCCACCAACTTAGCAAAAATA 57.410 32.000 0.00 0.00 0.00 1.40
815 816 8.189119 TCTTTCCACCAACTTAGCAAAAATAT 57.811 30.769 0.00 0.00 0.00 1.28
816 817 9.303116 TCTTTCCACCAACTTAGCAAAAATATA 57.697 29.630 0.00 0.00 0.00 0.86
817 818 9.353999 CTTTCCACCAACTTAGCAAAAATATAC 57.646 33.333 0.00 0.00 0.00 1.47
818 819 8.644374 TTCCACCAACTTAGCAAAAATATACT 57.356 30.769 0.00 0.00 0.00 2.12
819 820 9.742144 TTCCACCAACTTAGCAAAAATATACTA 57.258 29.630 0.00 0.00 0.00 1.82
820 821 9.391006 TCCACCAACTTAGCAAAAATATACTAG 57.609 33.333 0.00 0.00 0.00 2.57
821 822 9.174166 CCACCAACTTAGCAAAAATATACTAGT 57.826 33.333 0.00 0.00 0.00 2.57
841 842 8.438676 ACTAGTTTATTTGTTATAGCCAGCTG 57.561 34.615 6.78 6.78 0.00 4.24
842 843 8.265055 ACTAGTTTATTTGTTATAGCCAGCTGA 58.735 33.333 17.39 0.00 0.00 4.26
843 844 7.321745 AGTTTATTTGTTATAGCCAGCTGAC 57.678 36.000 17.39 2.52 0.00 3.51
844 845 7.112779 AGTTTATTTGTTATAGCCAGCTGACT 58.887 34.615 17.39 12.46 0.00 3.41
845 846 7.281100 AGTTTATTTGTTATAGCCAGCTGACTC 59.719 37.037 17.39 3.75 0.00 3.36
846 847 4.551702 TTTGTTATAGCCAGCTGACTCA 57.448 40.909 17.39 0.00 0.00 3.41
847 848 3.808466 TGTTATAGCCAGCTGACTCAG 57.192 47.619 17.39 1.21 34.12 3.35
862 863 4.748892 TGACTCAGCTCTATTGTACTTGC 58.251 43.478 0.00 0.00 0.00 4.01
863 864 4.464244 TGACTCAGCTCTATTGTACTTGCT 59.536 41.667 0.00 0.00 0.00 3.91
864 865 5.004922 ACTCAGCTCTATTGTACTTGCTC 57.995 43.478 0.00 0.00 0.00 4.26
865 866 4.142049 ACTCAGCTCTATTGTACTTGCTCC 60.142 45.833 0.00 0.00 0.00 4.70
866 867 4.026744 TCAGCTCTATTGTACTTGCTCCT 58.973 43.478 0.00 0.00 0.00 3.69
867 868 5.201243 TCAGCTCTATTGTACTTGCTCCTA 58.799 41.667 0.00 0.00 0.00 2.94
868 869 5.067936 TCAGCTCTATTGTACTTGCTCCTAC 59.932 44.000 0.00 0.00 0.00 3.18
869 870 4.036971 AGCTCTATTGTACTTGCTCCTACG 59.963 45.833 0.00 0.00 0.00 3.51
870 871 4.036498 GCTCTATTGTACTTGCTCCTACGA 59.964 45.833 0.00 0.00 0.00 3.43
871 872 5.450137 GCTCTATTGTACTTGCTCCTACGAA 60.450 44.000 0.00 0.00 0.00 3.85
879 880 0.898326 TGCTCCTACGAAGCCTGTCA 60.898 55.000 0.00 0.00 39.05 3.58
942 948 2.292569 ACAACGACTCACGAGCTTTCTA 59.707 45.455 0.00 0.00 45.77 2.10
973 992 3.897505 AGACCAAAAGCTAAAGCCACAAT 59.102 39.130 0.00 0.00 43.38 2.71
988 1025 3.821033 GCCACAATCAAGTCCAGTTTAGT 59.179 43.478 0.00 0.00 0.00 2.24
1740 4611 3.067461 TGTTATGTTTGTGTGTTCTGGCC 59.933 43.478 0.00 0.00 0.00 5.36
1841 4720 9.252962 GAATCCATGCCATTTTTATCTTTAGTG 57.747 33.333 0.00 0.00 0.00 2.74
1898 4777 9.349713 TGGAAAGAGAAGTAAGCTTAAAATGAA 57.650 29.630 7.99 0.00 34.61 2.57
1912 4791 8.374743 AGCTTAAAATGAAGAAAATAAGGCCAA 58.625 29.630 5.01 0.00 0.00 4.52
1924 4803 9.271828 AGAAAATAAGGCCAACAAAATAACAAG 57.728 29.630 5.01 0.00 0.00 3.16
1941 4820 5.644977 AACAAGCCTACTAAAAATCAGCC 57.355 39.130 0.00 0.00 0.00 4.85
2053 4932 5.710099 ACATTGACGGTCATTTCAGGTTATT 59.290 36.000 12.26 0.00 0.00 1.40
2061 4940 6.122277 GGTCATTTCAGGTTATTCCTCATCA 58.878 40.000 0.00 0.00 46.24 3.07
2092 4971 1.806542 GTCATGTGACGCAACATCCTT 59.193 47.619 0.79 0.00 38.75 3.36
2141 5027 9.853555 TTAGAATGGTTGTAGCATTTATTGTTG 57.146 29.630 5.68 0.00 45.23 3.33
2142 5028 7.895759 AGAATGGTTGTAGCATTTATTGTTGT 58.104 30.769 5.68 0.00 45.23 3.32
2202 5088 2.514592 CATCCAGCCGTGCCGAAT 60.515 61.111 0.00 0.00 0.00 3.34
2203 5089 2.114670 CATCCAGCCGTGCCGAATT 61.115 57.895 0.00 0.00 0.00 2.17
2205 5091 0.107410 ATCCAGCCGTGCCGAATTAA 60.107 50.000 0.00 0.00 0.00 1.40
2206 5092 0.321741 TCCAGCCGTGCCGAATTAAA 60.322 50.000 0.00 0.00 0.00 1.52
2207 5093 0.523966 CCAGCCGTGCCGAATTAAAA 59.476 50.000 0.00 0.00 0.00 1.52
2208 5094 1.467374 CCAGCCGTGCCGAATTAAAAG 60.467 52.381 0.00 0.00 0.00 2.27
2209 5095 1.466950 CAGCCGTGCCGAATTAAAAGA 59.533 47.619 0.00 0.00 0.00 2.52
2210 5096 2.095466 CAGCCGTGCCGAATTAAAAGAA 60.095 45.455 0.00 0.00 0.00 2.52
2211 5097 2.554893 AGCCGTGCCGAATTAAAAGAAA 59.445 40.909 0.00 0.00 0.00 2.52
2212 5098 3.192633 AGCCGTGCCGAATTAAAAGAAAT 59.807 39.130 0.00 0.00 0.00 2.17
2213 5099 4.396790 AGCCGTGCCGAATTAAAAGAAATA 59.603 37.500 0.00 0.00 0.00 1.40
2214 5100 5.067283 AGCCGTGCCGAATTAAAAGAAATAT 59.933 36.000 0.00 0.00 0.00 1.28
2253 5139 4.930696 TGAGTTCTAGACAGACACCCATA 58.069 43.478 0.00 0.00 0.00 2.74
2289 5232 3.753272 ACATCACCCATCGTCTTCTTTTG 59.247 43.478 0.00 0.00 0.00 2.44
2322 5265 3.357079 GCAACTCCACCCAGCGTG 61.357 66.667 0.00 0.00 42.62 5.34
2349 5292 4.983671 AAACAGAACCTCAAAAGACACC 57.016 40.909 0.00 0.00 0.00 4.16
2350 5293 3.644966 ACAGAACCTCAAAAGACACCA 57.355 42.857 0.00 0.00 0.00 4.17
2355 5298 5.997746 CAGAACCTCAAAAGACACCAGATAA 59.002 40.000 0.00 0.00 0.00 1.75
2359 5302 4.263506 CCTCAAAAGACACCAGATAAGGGT 60.264 45.833 0.00 0.00 39.88 4.34
2467 8175 6.204688 TGGCATCTTCGTCCATACAATAAATC 59.795 38.462 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.686587 CCACTATGGACTACATGCGGA 59.313 52.381 0.00 0.00 40.96 5.54
1 2 1.686587 TCCACTATGGACTACATGCGG 59.313 52.381 0.00 0.00 42.67 5.69
11 12 9.807921 AAGTCTTTTTAGAAATTCCACTATGGA 57.192 29.630 0.00 0.00 46.61 3.41
29 30 9.392259 CCCTCCGTTCTTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 39.65 2.27
30 31 8.765517 TCCCTCCGTTCTTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 39.65 2.52
31 32 8.315220 TCCCTCCGTTCTTAAATATAAGTCTT 57.685 34.615 0.00 0.00 39.65 3.01
32 33 7.564292 ACTCCCTCCGTTCTTAAATATAAGTCT 59.436 37.037 0.00 0.00 39.65 3.24
33 34 7.724287 ACTCCCTCCGTTCTTAAATATAAGTC 58.276 38.462 0.00 0.00 39.65 3.01
34 35 7.672122 ACTCCCTCCGTTCTTAAATATAAGT 57.328 36.000 0.00 0.00 39.65 2.24
39 40 9.822185 GTTTTATACTCCCTCCGTTCTTAAATA 57.178 33.333 0.00 0.00 0.00 1.40
40 41 8.323567 TGTTTTATACTCCCTCCGTTCTTAAAT 58.676 33.333 0.00 0.00 0.00 1.40
41 42 7.678837 TGTTTTATACTCCCTCCGTTCTTAAA 58.321 34.615 0.00 0.00 0.00 1.52
42 43 7.243604 TGTTTTATACTCCCTCCGTTCTTAA 57.756 36.000 0.00 0.00 0.00 1.85
43 44 6.855763 TGTTTTATACTCCCTCCGTTCTTA 57.144 37.500 0.00 0.00 0.00 2.10
44 45 5.750352 TGTTTTATACTCCCTCCGTTCTT 57.250 39.130 0.00 0.00 0.00 2.52
45 46 5.671493 CATGTTTTATACTCCCTCCGTTCT 58.329 41.667 0.00 0.00 0.00 3.01
46 47 4.272748 GCATGTTTTATACTCCCTCCGTTC 59.727 45.833 0.00 0.00 0.00 3.95
47 48 4.196971 GCATGTTTTATACTCCCTCCGTT 58.803 43.478 0.00 0.00 0.00 4.44
48 49 3.199071 TGCATGTTTTATACTCCCTCCGT 59.801 43.478 0.00 0.00 0.00 4.69
49 50 3.804036 TGCATGTTTTATACTCCCTCCG 58.196 45.455 0.00 0.00 0.00 4.63
50 51 4.022849 GCATGCATGTTTTATACTCCCTCC 60.023 45.833 26.79 1.51 0.00 4.30
51 52 4.022849 GGCATGCATGTTTTATACTCCCTC 60.023 45.833 26.79 5.67 0.00 4.30
52 53 3.891366 GGCATGCATGTTTTATACTCCCT 59.109 43.478 26.79 0.00 0.00 4.20
53 54 3.005791 GGGCATGCATGTTTTATACTCCC 59.994 47.826 26.79 20.21 0.00 4.30
54 55 3.891366 AGGGCATGCATGTTTTATACTCC 59.109 43.478 26.79 15.62 0.00 3.85
55 56 5.048713 GGTAGGGCATGCATGTTTTATACTC 60.049 44.000 26.79 9.12 0.00 2.59
56 57 4.827284 GGTAGGGCATGCATGTTTTATACT 59.173 41.667 26.79 15.82 0.00 2.12
57 58 4.827284 AGGTAGGGCATGCATGTTTTATAC 59.173 41.667 26.79 19.83 0.00 1.47
79 80 7.094508 ACAACACAGAGATACTCACATCTAG 57.905 40.000 0.00 0.00 35.37 2.43
86 87 5.321927 TCCACTACAACACAGAGATACTCA 58.678 41.667 0.00 0.00 32.06 3.41
90 91 6.263392 GCTCTATCCACTACAACACAGAGATA 59.737 42.308 0.00 0.00 31.92 1.98
92 93 4.399618 GCTCTATCCACTACAACACAGAGA 59.600 45.833 0.00 0.00 31.92 3.10
128 129 4.821589 GAACCTGAGCCCGAGCCG 62.822 72.222 0.00 0.00 41.25 5.52
226 227 2.737252 GACCAGTCTCATTCCGTTGTTC 59.263 50.000 0.00 0.00 0.00 3.18
233 234 2.159028 GCCACTAGACCAGTCTCATTCC 60.159 54.545 3.00 0.00 40.93 3.01
234 235 2.763448 AGCCACTAGACCAGTCTCATTC 59.237 50.000 3.00 0.00 40.93 2.67
247 248 2.586792 GCACCTCCCAGCCACTAG 59.413 66.667 0.00 0.00 0.00 2.57
277 278 2.253414 GATTCAAACCGGCGACCTGC 62.253 60.000 9.30 0.00 45.38 4.85
278 279 1.644786 GGATTCAAACCGGCGACCTG 61.645 60.000 9.30 1.62 0.00 4.00
300 301 2.228822 ACTAAAAATCTTGCCGCACAGG 59.771 45.455 0.00 0.00 44.97 4.00
303 304 4.149922 GGAAAACTAAAAATCTTGCCGCAC 59.850 41.667 0.00 0.00 0.00 5.34
304 305 4.303282 GGAAAACTAAAAATCTTGCCGCA 58.697 39.130 0.00 0.00 0.00 5.69
305 306 3.363724 CGGAAAACTAAAAATCTTGCCGC 59.636 43.478 0.00 0.00 0.00 6.53
306 307 3.363724 GCGGAAAACTAAAAATCTTGCCG 59.636 43.478 0.00 0.00 38.15 5.69
307 308 4.303282 TGCGGAAAACTAAAAATCTTGCC 58.697 39.130 0.00 0.00 0.00 4.52
392 393 1.078143 GCCCCACCTGTCAGATGAC 60.078 63.158 0.00 6.01 44.97 3.06
396 397 3.249189 GTGGCCCCACCTGTCAGA 61.249 66.667 0.00 0.00 40.79 3.27
446 447 2.851263 ATAAAACGGTCTGACAGCCA 57.149 45.000 10.38 0.00 0.00 4.75
455 456 6.732531 AAGCCTAAGTGTTATAAAACGGTC 57.267 37.500 0.00 0.00 38.53 4.79
464 465 6.622427 ACCAACTCTAAGCCTAAGTGTTAT 57.378 37.500 0.00 0.00 31.43 1.89
505 506 7.433131 TCGTAACGAATCAGTACCATTAATCAC 59.567 37.037 0.00 0.00 31.06 3.06
553 554 5.342259 GGCTTTGTAACGAGTTAATTGCAAG 59.658 40.000 4.94 0.00 32.98 4.01
568 569 5.799827 AACCATGCTTTAAGGCTTTGTAA 57.200 34.783 4.45 0.00 0.00 2.41
569 570 6.902771 TTAACCATGCTTTAAGGCTTTGTA 57.097 33.333 4.45 0.00 0.00 2.41
570 571 5.799827 TTAACCATGCTTTAAGGCTTTGT 57.200 34.783 4.45 3.92 0.00 2.83
571 572 7.547227 ACTATTAACCATGCTTTAAGGCTTTG 58.453 34.615 4.45 8.33 0.00 2.77
572 573 7.718334 ACTATTAACCATGCTTTAAGGCTTT 57.282 32.000 4.45 2.08 0.00 3.51
573 574 8.996651 ATACTATTAACCATGCTTTAAGGCTT 57.003 30.769 11.19 4.58 0.00 4.35
582 583 9.490379 GCAGTTAGTTATACTATTAACCATGCT 57.510 33.333 0.00 0.00 33.43 3.79
583 584 9.490379 AGCAGTTAGTTATACTATTAACCATGC 57.510 33.333 0.00 0.00 33.43 4.06
585 586 9.998106 CCAGCAGTTAGTTATACTATTAACCAT 57.002 33.333 0.00 0.00 33.43 3.55
586 587 7.929785 GCCAGCAGTTAGTTATACTATTAACCA 59.070 37.037 0.00 0.00 33.43 3.67
587 588 8.148999 AGCCAGCAGTTAGTTATACTATTAACC 58.851 37.037 0.00 0.00 33.43 2.85
593 594 8.521176 GCTTATAGCCAGCAGTTAGTTATACTA 58.479 37.037 0.00 0.00 37.22 1.82
594 595 7.379750 GCTTATAGCCAGCAGTTAGTTATACT 58.620 38.462 0.00 0.00 37.22 2.12
595 596 7.583860 GCTTATAGCCAGCAGTTAGTTATAC 57.416 40.000 0.00 0.00 37.22 1.47
611 612 6.176183 AGATGACATGGTAATGGCTTATAGC 58.824 40.000 0.00 0.00 42.94 2.97
614 615 7.989741 GCTATAGATGACATGGTAATGGCTTAT 59.010 37.037 3.21 0.00 42.94 1.73
615 616 7.331026 GCTATAGATGACATGGTAATGGCTTA 58.669 38.462 3.21 0.00 42.94 3.09
616 617 6.176183 GCTATAGATGACATGGTAATGGCTT 58.824 40.000 3.21 0.00 42.94 4.35
617 618 5.338708 GGCTATAGATGACATGGTAATGGCT 60.339 44.000 3.21 0.00 42.94 4.75
618 619 4.878397 GGCTATAGATGACATGGTAATGGC 59.122 45.833 3.21 0.00 42.81 4.40
619 620 5.045651 TGGGCTATAGATGACATGGTAATGG 60.046 44.000 3.21 0.00 38.19 3.16
620 621 6.053632 TGGGCTATAGATGACATGGTAATG 57.946 41.667 3.21 0.00 39.89 1.90
621 622 6.675746 AGATGGGCTATAGATGACATGGTAAT 59.324 38.462 3.21 0.00 0.00 1.89
622 623 6.025539 AGATGGGCTATAGATGACATGGTAA 58.974 40.000 3.21 0.00 0.00 2.85
623 624 5.593786 AGATGGGCTATAGATGACATGGTA 58.406 41.667 3.21 0.00 0.00 3.25
624 625 4.433255 AGATGGGCTATAGATGACATGGT 58.567 43.478 3.21 0.00 0.00 3.55
625 626 5.432680 AAGATGGGCTATAGATGACATGG 57.567 43.478 3.21 0.00 0.00 3.66
626 627 7.871973 GCTATAAGATGGGCTATAGATGACATG 59.128 40.741 3.21 0.00 0.00 3.21
627 628 7.016072 GGCTATAAGATGGGCTATAGATGACAT 59.984 40.741 3.21 1.49 33.43 3.06
628 629 6.325028 GGCTATAAGATGGGCTATAGATGACA 59.675 42.308 3.21 0.00 33.43 3.58
629 630 6.325028 TGGCTATAAGATGGGCTATAGATGAC 59.675 42.308 3.21 0.00 37.22 3.06
630 631 6.443832 TGGCTATAAGATGGGCTATAGATGA 58.556 40.000 3.21 0.00 37.22 2.92
631 632 6.737720 TGGCTATAAGATGGGCTATAGATG 57.262 41.667 3.21 0.00 37.22 2.90
632 633 7.944414 ATTGGCTATAAGATGGGCTATAGAT 57.056 36.000 3.21 0.00 37.22 1.98
633 634 8.874156 CATATTGGCTATAAGATGGGCTATAGA 58.126 37.037 3.21 0.00 37.41 1.98
634 635 8.654997 ACATATTGGCTATAAGATGGGCTATAG 58.345 37.037 0.00 0.00 37.41 1.31
635 636 8.567198 ACATATTGGCTATAAGATGGGCTATA 57.433 34.615 0.00 3.91 38.02 1.31
636 637 7.457380 ACATATTGGCTATAAGATGGGCTAT 57.543 36.000 0.00 0.00 34.46 2.97
637 638 6.891306 ACATATTGGCTATAAGATGGGCTA 57.109 37.500 0.00 0.00 34.46 3.93
638 639 5.786121 ACATATTGGCTATAAGATGGGCT 57.214 39.130 0.00 0.00 34.46 5.19
639 640 9.799106 ATTATACATATTGGCTATAAGATGGGC 57.201 33.333 0.00 0.00 34.46 5.36
690 691 7.841282 TGAAAGGTGGACCACATAATAAAAA 57.159 32.000 25.75 0.00 38.89 1.94
691 692 8.429237 AATGAAAGGTGGACCACATAATAAAA 57.571 30.769 25.75 3.54 38.89 1.52
692 693 8.429237 AAATGAAAGGTGGACCACATAATAAA 57.571 30.769 25.75 5.63 38.89 1.40
693 694 8.429237 AAAATGAAAGGTGGACCACATAATAA 57.571 30.769 25.75 5.77 38.89 1.40
694 695 7.671819 TGAAAATGAAAGGTGGACCACATAATA 59.328 33.333 25.75 9.08 38.89 0.98
695 696 6.496565 TGAAAATGAAAGGTGGACCACATAAT 59.503 34.615 25.75 11.79 38.89 1.28
696 697 5.835819 TGAAAATGAAAGGTGGACCACATAA 59.164 36.000 25.75 9.12 38.89 1.90
697 698 5.242838 GTGAAAATGAAAGGTGGACCACATA 59.757 40.000 25.75 4.75 38.89 2.29
698 699 4.039124 GTGAAAATGAAAGGTGGACCACAT 59.961 41.667 25.75 17.09 38.89 3.21
699 700 3.383185 GTGAAAATGAAAGGTGGACCACA 59.617 43.478 25.75 5.54 38.89 4.17
700 701 3.383185 TGTGAAAATGAAAGGTGGACCAC 59.617 43.478 16.86 16.86 38.89 4.16
701 702 3.636679 TGTGAAAATGAAAGGTGGACCA 58.363 40.909 0.00 0.00 38.89 4.02
702 703 4.664150 TTGTGAAAATGAAAGGTGGACC 57.336 40.909 0.00 0.00 0.00 4.46
703 704 5.519927 CACTTTGTGAAAATGAAAGGTGGAC 59.480 40.000 0.00 0.00 35.23 4.02
704 705 5.659463 CACTTTGTGAAAATGAAAGGTGGA 58.341 37.500 0.00 0.00 35.23 4.02
705 706 4.270808 GCACTTTGTGAAAATGAAAGGTGG 59.729 41.667 1.52 0.00 35.23 4.61
706 707 4.270808 GGCACTTTGTGAAAATGAAAGGTG 59.729 41.667 1.52 0.00 35.23 4.00
707 708 4.441792 GGCACTTTGTGAAAATGAAAGGT 58.558 39.130 1.52 0.00 35.23 3.50
708 709 3.809279 GGGCACTTTGTGAAAATGAAAGG 59.191 43.478 1.52 0.00 35.23 3.11
709 710 4.440880 TGGGCACTTTGTGAAAATGAAAG 58.559 39.130 1.52 0.00 35.23 2.62
710 711 4.161189 TCTGGGCACTTTGTGAAAATGAAA 59.839 37.500 1.52 0.00 35.23 2.69
711 712 3.703556 TCTGGGCACTTTGTGAAAATGAA 59.296 39.130 1.52 0.00 35.23 2.57
712 713 3.295093 TCTGGGCACTTTGTGAAAATGA 58.705 40.909 1.52 0.00 35.23 2.57
713 714 3.645884 CTCTGGGCACTTTGTGAAAATG 58.354 45.455 1.52 0.00 35.23 2.32
714 715 2.036346 GCTCTGGGCACTTTGTGAAAAT 59.964 45.455 0.00 0.00 41.35 1.82
715 716 1.408702 GCTCTGGGCACTTTGTGAAAA 59.591 47.619 0.00 0.00 41.35 2.29
716 717 1.032014 GCTCTGGGCACTTTGTGAAA 58.968 50.000 0.00 0.00 41.35 2.69
717 718 2.719376 GCTCTGGGCACTTTGTGAA 58.281 52.632 0.00 0.00 41.35 3.18
718 719 4.481195 GCTCTGGGCACTTTGTGA 57.519 55.556 0.00 0.00 41.35 3.58
734 735 3.191539 GCCAGCTCTAGCACGTGC 61.192 66.667 32.79 32.79 45.16 5.34
735 736 1.518133 GAGCCAGCTCTAGCACGTG 60.518 63.158 12.28 12.28 45.16 4.49
736 737 2.888863 GAGCCAGCTCTAGCACGT 59.111 61.111 12.42 0.00 45.16 4.49
744 745 0.322975 TCTTGGTGAAGAGCCAGCTC 59.677 55.000 11.78 11.78 43.03 4.09
745 746 0.324285 CTCTTGGTGAAGAGCCAGCT 59.676 55.000 0.00 0.00 46.80 4.24
746 747 2.851798 CTCTTGGTGAAGAGCCAGC 58.148 57.895 0.00 0.00 46.80 4.85
752 753 0.767375 AAGCAGGCTCTTGGTGAAGA 59.233 50.000 0.00 0.00 36.72 2.87
753 754 2.079925 GTAAGCAGGCTCTTGGTGAAG 58.920 52.381 8.77 0.00 0.00 3.02
754 755 1.271379 GGTAAGCAGGCTCTTGGTGAA 60.271 52.381 8.77 0.00 0.00 3.18
755 756 0.324943 GGTAAGCAGGCTCTTGGTGA 59.675 55.000 8.77 0.00 0.00 4.02
756 757 0.326264 AGGTAAGCAGGCTCTTGGTG 59.674 55.000 8.77 0.00 0.00 4.17
757 758 1.003696 GAAGGTAAGCAGGCTCTTGGT 59.996 52.381 8.77 0.00 0.00 3.67
758 759 1.280421 AGAAGGTAAGCAGGCTCTTGG 59.720 52.381 8.77 0.00 0.00 3.61
759 760 2.235898 AGAGAAGGTAAGCAGGCTCTTG 59.764 50.000 8.77 0.00 29.02 3.02
760 761 2.499693 GAGAGAAGGTAAGCAGGCTCTT 59.500 50.000 0.00 0.00 33.26 2.85
761 762 2.107366 GAGAGAAGGTAAGCAGGCTCT 58.893 52.381 0.00 0.00 35.59 4.09
762 763 2.100749 GAGAGAGAAGGTAAGCAGGCTC 59.899 54.545 0.00 0.00 0.00 4.70
763 764 2.107366 GAGAGAGAAGGTAAGCAGGCT 58.893 52.381 0.00 0.00 0.00 4.58
764 765 2.107366 AGAGAGAGAAGGTAAGCAGGC 58.893 52.381 0.00 0.00 0.00 4.85
765 766 4.023291 AGAAGAGAGAGAAGGTAAGCAGG 58.977 47.826 0.00 0.00 0.00 4.85
766 767 5.659440 AAGAAGAGAGAGAAGGTAAGCAG 57.341 43.478 0.00 0.00 0.00 4.24
767 768 6.268847 AGAAAAGAAGAGAGAGAAGGTAAGCA 59.731 38.462 0.00 0.00 0.00 3.91
768 769 6.697395 AGAAAAGAAGAGAGAGAAGGTAAGC 58.303 40.000 0.00 0.00 0.00 3.09
769 770 9.203421 GAAAGAAAAGAAGAGAGAGAAGGTAAG 57.797 37.037 0.00 0.00 0.00 2.34
770 771 8.151596 GGAAAGAAAAGAAGAGAGAGAAGGTAA 58.848 37.037 0.00 0.00 0.00 2.85
771 772 7.290248 TGGAAAGAAAAGAAGAGAGAGAAGGTA 59.710 37.037 0.00 0.00 0.00 3.08
772 773 6.100424 TGGAAAGAAAAGAAGAGAGAGAAGGT 59.900 38.462 0.00 0.00 0.00 3.50
773 774 6.426633 GTGGAAAGAAAAGAAGAGAGAGAAGG 59.573 42.308 0.00 0.00 0.00 3.46
774 775 6.426633 GGTGGAAAGAAAAGAAGAGAGAGAAG 59.573 42.308 0.00 0.00 0.00 2.85
775 776 6.126768 TGGTGGAAAGAAAAGAAGAGAGAGAA 60.127 38.462 0.00 0.00 0.00 2.87
776 777 5.366768 TGGTGGAAAGAAAAGAAGAGAGAGA 59.633 40.000 0.00 0.00 0.00 3.10
777 778 5.615289 TGGTGGAAAGAAAAGAAGAGAGAG 58.385 41.667 0.00 0.00 0.00 3.20
778 779 5.630415 TGGTGGAAAGAAAAGAAGAGAGA 57.370 39.130 0.00 0.00 0.00 3.10
779 780 5.825151 AGTTGGTGGAAAGAAAAGAAGAGAG 59.175 40.000 0.00 0.00 0.00 3.20
780 781 5.755849 AGTTGGTGGAAAGAAAAGAAGAGA 58.244 37.500 0.00 0.00 0.00 3.10
781 782 6.456795 AAGTTGGTGGAAAGAAAAGAAGAG 57.543 37.500 0.00 0.00 0.00 2.85
782 783 6.039382 GCTAAGTTGGTGGAAAGAAAAGAAGA 59.961 38.462 0.00 0.00 0.00 2.87
783 784 6.183360 TGCTAAGTTGGTGGAAAGAAAAGAAG 60.183 38.462 0.00 0.00 0.00 2.85
784 785 5.654650 TGCTAAGTTGGTGGAAAGAAAAGAA 59.345 36.000 0.00 0.00 0.00 2.52
785 786 5.197451 TGCTAAGTTGGTGGAAAGAAAAGA 58.803 37.500 0.00 0.00 0.00 2.52
786 787 5.514274 TGCTAAGTTGGTGGAAAGAAAAG 57.486 39.130 0.00 0.00 0.00 2.27
787 788 5.923733 TTGCTAAGTTGGTGGAAAGAAAA 57.076 34.783 0.00 0.00 0.00 2.29
788 789 5.923733 TTTGCTAAGTTGGTGGAAAGAAA 57.076 34.783 0.00 0.00 0.00 2.52
789 790 5.923733 TTTTGCTAAGTTGGTGGAAAGAA 57.076 34.783 0.00 0.00 0.00 2.52
790 791 5.923733 TTTTTGCTAAGTTGGTGGAAAGA 57.076 34.783 0.00 0.00 0.00 2.52
791 792 9.353999 GTATATTTTTGCTAAGTTGGTGGAAAG 57.646 33.333 0.00 0.00 0.00 2.62
792 793 9.084533 AGTATATTTTTGCTAAGTTGGTGGAAA 57.915 29.630 0.00 0.00 0.00 3.13
793 794 8.644374 AGTATATTTTTGCTAAGTTGGTGGAA 57.356 30.769 0.00 0.00 0.00 3.53
794 795 9.391006 CTAGTATATTTTTGCTAAGTTGGTGGA 57.609 33.333 0.00 0.00 0.00 4.02
795 796 9.174166 ACTAGTATATTTTTGCTAAGTTGGTGG 57.826 33.333 0.00 0.00 0.00 4.61
815 816 9.542462 CAGCTGGCTATAACAAATAAACTAGTA 57.458 33.333 5.57 0.00 0.00 1.82
816 817 8.265055 TCAGCTGGCTATAACAAATAAACTAGT 58.735 33.333 15.13 0.00 0.00 2.57
817 818 8.552034 GTCAGCTGGCTATAACAAATAAACTAG 58.448 37.037 12.09 0.00 0.00 2.57
818 819 8.265055 AGTCAGCTGGCTATAACAAATAAACTA 58.735 33.333 21.80 0.00 0.00 2.24
819 820 7.112779 AGTCAGCTGGCTATAACAAATAAACT 58.887 34.615 21.80 3.19 0.00 2.66
820 821 7.065803 TGAGTCAGCTGGCTATAACAAATAAAC 59.934 37.037 23.29 4.23 0.00 2.01
821 822 7.109501 TGAGTCAGCTGGCTATAACAAATAAA 58.890 34.615 23.29 0.00 0.00 1.40
822 823 6.649155 TGAGTCAGCTGGCTATAACAAATAA 58.351 36.000 23.29 0.00 0.00 1.40
823 824 6.233905 TGAGTCAGCTGGCTATAACAAATA 57.766 37.500 23.29 0.00 0.00 1.40
824 825 5.102953 TGAGTCAGCTGGCTATAACAAAT 57.897 39.130 23.29 0.00 0.00 2.32
825 826 4.507710 CTGAGTCAGCTGGCTATAACAAA 58.492 43.478 23.29 0.23 0.00 2.83
826 827 4.128925 CTGAGTCAGCTGGCTATAACAA 57.871 45.455 23.29 2.05 0.00 2.83
827 828 3.808466 CTGAGTCAGCTGGCTATAACA 57.192 47.619 23.29 14.02 0.00 2.41
839 840 4.803088 GCAAGTACAATAGAGCTGAGTCAG 59.197 45.833 16.21 16.21 34.12 3.51
840 841 4.464244 AGCAAGTACAATAGAGCTGAGTCA 59.536 41.667 0.00 0.00 0.00 3.41
841 842 5.004922 AGCAAGTACAATAGAGCTGAGTC 57.995 43.478 0.00 0.00 0.00 3.36
842 843 4.142049 GGAGCAAGTACAATAGAGCTGAGT 60.142 45.833 0.00 0.00 31.61 3.41
843 844 4.099266 AGGAGCAAGTACAATAGAGCTGAG 59.901 45.833 0.00 0.00 31.61 3.35
844 845 4.026744 AGGAGCAAGTACAATAGAGCTGA 58.973 43.478 0.00 0.00 31.61 4.26
845 846 4.399004 AGGAGCAAGTACAATAGAGCTG 57.601 45.455 0.00 0.00 31.61 4.24
846 847 4.036971 CGTAGGAGCAAGTACAATAGAGCT 59.963 45.833 0.00 0.00 34.61 4.09
847 848 4.036498 TCGTAGGAGCAAGTACAATAGAGC 59.964 45.833 0.00 0.00 0.00 4.09
848 849 5.752892 TCGTAGGAGCAAGTACAATAGAG 57.247 43.478 0.00 0.00 0.00 2.43
849 850 5.450137 GCTTCGTAGGAGCAAGTACAATAGA 60.450 44.000 0.00 0.00 0.00 1.98
850 851 4.740695 GCTTCGTAGGAGCAAGTACAATAG 59.259 45.833 0.00 0.00 0.00 1.73
851 852 4.441079 GGCTTCGTAGGAGCAAGTACAATA 60.441 45.833 2.50 0.00 0.00 1.90
852 853 3.522553 GCTTCGTAGGAGCAAGTACAAT 58.477 45.455 0.00 0.00 0.00 2.71
853 854 2.353406 GGCTTCGTAGGAGCAAGTACAA 60.353 50.000 2.50 0.00 0.00 2.41
854 855 1.203994 GGCTTCGTAGGAGCAAGTACA 59.796 52.381 2.50 0.00 0.00 2.90
855 856 1.477295 AGGCTTCGTAGGAGCAAGTAC 59.523 52.381 2.50 0.00 0.00 2.73
856 857 1.476891 CAGGCTTCGTAGGAGCAAGTA 59.523 52.381 2.50 0.00 0.00 2.24
857 858 0.247736 CAGGCTTCGTAGGAGCAAGT 59.752 55.000 2.50 0.00 0.00 3.16
858 859 0.247736 ACAGGCTTCGTAGGAGCAAG 59.752 55.000 2.50 0.00 0.00 4.01
859 860 0.246635 GACAGGCTTCGTAGGAGCAA 59.753 55.000 2.50 0.00 0.00 3.91
860 861 0.898326 TGACAGGCTTCGTAGGAGCA 60.898 55.000 2.50 0.00 0.00 4.26
861 862 0.458716 GTGACAGGCTTCGTAGGAGC 60.459 60.000 0.00 0.00 0.00 4.70
862 863 1.178276 AGTGACAGGCTTCGTAGGAG 58.822 55.000 0.00 0.00 0.00 3.69
863 864 2.089980 GTAGTGACAGGCTTCGTAGGA 58.910 52.381 0.00 0.00 0.00 2.94
864 865 1.202154 CGTAGTGACAGGCTTCGTAGG 60.202 57.143 0.00 0.00 0.00 3.18
865 866 1.202154 CCGTAGTGACAGGCTTCGTAG 60.202 57.143 0.00 0.00 0.00 3.51
866 867 0.806868 CCGTAGTGACAGGCTTCGTA 59.193 55.000 0.00 0.00 0.00 3.43
867 868 1.585006 CCGTAGTGACAGGCTTCGT 59.415 57.895 0.00 0.00 0.00 3.85
868 869 1.805945 GCCGTAGTGACAGGCTTCG 60.806 63.158 9.01 0.00 46.83 3.79
869 870 4.187056 GCCGTAGTGACAGGCTTC 57.813 61.111 9.01 0.00 46.83 3.86
879 880 3.306502 CGGGTGGATATTTATGCCGTAGT 60.307 47.826 0.00 0.00 0.00 2.73
942 948 2.601905 AGCTTTTGGTCTTTGGCTGAT 58.398 42.857 0.00 0.00 0.00 2.90
973 992 4.591498 TGCCTCTTACTAAACTGGACTTGA 59.409 41.667 0.00 0.00 0.00 3.02
988 1025 3.587061 TGGAACTCCATCTTTGCCTCTTA 59.413 43.478 0.00 0.00 42.01 2.10
1230 4065 9.774742 GGAAATGAACATCTAAACATACTGAAC 57.225 33.333 0.00 0.00 0.00 3.18
1759 4632 9.337396 TGACATAGAAACAAGTTCAATTGTACT 57.663 29.630 11.56 11.56 42.49 2.73
1766 4639 7.873719 TTCCTTGACATAGAAACAAGTTCAA 57.126 32.000 0.00 0.00 39.19 2.69
1782 4655 2.222227 AAGGGCCTGATTTCCTTGAC 57.778 50.000 6.92 0.00 39.22 3.18
1898 4777 9.271828 CTTGTTATTTTGTTGGCCTTATTTTCT 57.728 29.630 3.32 0.00 0.00 2.52
1924 4803 3.309954 CAGTCGGCTGATTTTTAGTAGGC 59.690 47.826 12.86 0.00 45.28 3.93
1941 4820 4.988540 TGTGACTTGGTTAAATCTCAGTCG 59.011 41.667 0.00 0.00 0.00 4.18
2053 4932 1.893137 ACGTGCTACAACTGATGAGGA 59.107 47.619 0.00 0.00 0.00 3.71
2061 4940 2.404215 GTCACATGACGTGCTACAACT 58.596 47.619 0.00 0.00 45.92 3.16
2136 5022 2.095461 TGGTACTGCAAGCAACAACAA 58.905 42.857 0.00 0.00 37.60 2.83
2137 5023 1.756430 TGGTACTGCAAGCAACAACA 58.244 45.000 0.00 0.00 37.60 3.33
2138 5024 2.665519 CGATGGTACTGCAAGCAACAAC 60.666 50.000 0.00 0.00 37.60 3.32
2139 5025 1.535028 CGATGGTACTGCAAGCAACAA 59.465 47.619 0.00 0.00 37.60 2.83
2140 5026 1.155889 CGATGGTACTGCAAGCAACA 58.844 50.000 0.00 0.00 37.60 3.33
2141 5027 1.156736 ACGATGGTACTGCAAGCAAC 58.843 50.000 0.00 0.00 37.60 4.17
2142 5028 2.739913 GTTACGATGGTACTGCAAGCAA 59.260 45.455 0.00 0.00 37.60 3.91
2202 5088 7.411480 CGAGTGACGTCAGCATATTTCTTTTAA 60.411 37.037 20.73 0.00 37.22 1.52
2203 5089 6.034577 CGAGTGACGTCAGCATATTTCTTTTA 59.965 38.462 20.73 0.00 37.22 1.52
2205 5091 4.327357 CGAGTGACGTCAGCATATTTCTTT 59.673 41.667 20.73 0.00 37.22 2.52
2206 5092 3.859961 CGAGTGACGTCAGCATATTTCTT 59.140 43.478 20.73 0.00 37.22 2.52
2207 5093 3.128764 TCGAGTGACGTCAGCATATTTCT 59.871 43.478 20.73 9.76 43.13 2.52
2208 5094 3.435566 TCGAGTGACGTCAGCATATTTC 58.564 45.455 20.73 4.30 43.13 2.17
2209 5095 3.503827 TCGAGTGACGTCAGCATATTT 57.496 42.857 20.73 0.00 43.13 1.40
2210 5096 3.717400 ATCGAGTGACGTCAGCATATT 57.283 42.857 20.73 0.00 43.13 1.28
2211 5097 3.066760 TCAATCGAGTGACGTCAGCATAT 59.933 43.478 20.73 8.00 43.13 1.78
2212 5098 2.422127 TCAATCGAGTGACGTCAGCATA 59.578 45.455 20.73 5.75 43.13 3.14
2213 5099 1.202348 TCAATCGAGTGACGTCAGCAT 59.798 47.619 20.73 8.13 43.13 3.79
2214 5100 0.596082 TCAATCGAGTGACGTCAGCA 59.404 50.000 20.73 3.14 43.13 4.41
2289 5232 4.499188 GGAGTTGCCCTTAGTTGTTTGTTC 60.499 45.833 0.00 0.00 0.00 3.18
2322 5265 5.460091 GTCTTTTGAGGTTCTGTTTTGATGC 59.540 40.000 0.00 0.00 0.00 3.91
2349 5292 0.947244 GATTGCCGCACCCTTATCTG 59.053 55.000 0.00 0.00 0.00 2.90
2350 5293 0.179018 GGATTGCCGCACCCTTATCT 60.179 55.000 0.00 0.00 0.00 1.98
2437 8145 2.380084 TGGACGAAGATGCCAGTTAC 57.620 50.000 0.00 0.00 0.00 2.50
2513 8221 7.326063 GTCTCGGTAAGTTGGAATTCAAATTTG 59.674 37.037 12.15 12.15 40.24 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.