Multiple sequence alignment - TraesCS5D01G433000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G433000 chr5D 100.000 2359 0 0 1 2359 488865306 488862948 0.000000e+00 4357
1 TraesCS5D01G433000 chr5D 95.631 206 8 1 190 394 488866237 488866442 1.750000e-86 329
2 TraesCS5D01G433000 chr5A 94.804 1655 44 15 584 2207 609872811 609871168 0.000000e+00 2542
3 TraesCS5D01G433000 chr5A 95.973 149 5 1 2212 2359 609871194 609871046 8.420000e-60 241
4 TraesCS5D01G433000 chr5A 94.872 78 3 1 394 470 609873242 609873165 1.150000e-23 121
5 TraesCS5D01G433000 chr5B 92.558 1599 57 29 583 2141 602251534 602249958 0.000000e+00 2237
6 TraesCS5D01G433000 chr5B 93.443 122 8 0 2236 2357 602249777 602249656 5.180000e-42 182
7 TraesCS5D01G433000 chr5B 96.552 87 3 0 502 588 602254464 602254378 6.790000e-31 145
8 TraesCS5D01G433000 chr5B 95.122 82 3 1 395 475 602254888 602254807 6.840000e-26 128
9 TraesCS5D01G433000 chr3D 99.491 393 2 0 1 393 21367124 21366732 0.000000e+00 715
10 TraesCS5D01G433000 chr3D 95.122 205 9 1 190 393 21368053 21368257 2.920000e-84 322
11 TraesCS5D01G433000 chr2D 99.727 366 1 0 1 366 119285189 119285554 0.000000e+00 671
12 TraesCS5D01G433000 chr2D 94.634 205 10 1 190 393 119284258 119284054 1.360000e-82 316
13 TraesCS5D01G433000 chr2D 86.979 192 25 0 1216 1407 301817385 301817576 1.420000e-52 217
14 TraesCS5D01G433000 chr2D 89.412 85 9 0 1324 1408 119299733 119299817 8.920000e-20 108
15 TraesCS5D01G433000 chr2D 83.178 107 18 0 1324 1430 572734865 572734759 5.370000e-17 99
16 TraesCS5D01G433000 chr2A 92.677 396 28 1 1 395 332001743 332002138 9.460000e-159 569
17 TraesCS5D01G433000 chr2A 78.670 436 73 18 985 1407 378850137 378850565 2.990000e-69 272
18 TraesCS5D01G433000 chr2A 89.412 85 9 0 1324 1408 121225528 121225612 8.920000e-20 108
19 TraesCS5D01G433000 chr6B 93.868 212 12 1 183 393 214036360 214036571 3.780000e-83 318
20 TraesCS5D01G433000 chr2B 77.560 459 81 17 985 1423 356594441 356594897 8.370000e-65 257
21 TraesCS5D01G433000 chr2B 83.178 107 18 0 1324 1430 688433398 688433292 5.370000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G433000 chr5D 488862948 488865306 2358 True 4357 4357 100.000000 1 2359 1 chr5D.!!$R1 2358
1 TraesCS5D01G433000 chr5A 609871046 609873242 2196 True 968 2542 95.216333 394 2359 3 chr5A.!!$R1 1965
2 TraesCS5D01G433000 chr5B 602249656 602254888 5232 True 673 2237 94.418750 395 2357 4 chr5B.!!$R1 1962

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 293 0.030101 CGGGCGTCTTTTTGCAAGAA 59.97 50.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 4964 0.391661 CCAGGTCAGTTGATCACCCG 60.392 60.0 0.0 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.586357 GAAGGCGGCCGATGAGAC 60.586 66.667 33.48 9.93 0.00 3.36
18 19 4.514577 AAGGCGGCCGATGAGACG 62.515 66.667 33.48 0.00 0.00 4.18
37 38 2.032528 CCAGTCGGCCACACACAT 59.967 61.111 2.24 0.00 0.00 3.21
38 39 2.327343 CCAGTCGGCCACACACATG 61.327 63.158 2.24 0.00 0.00 3.21
39 40 2.032528 AGTCGGCCACACACATGG 59.967 61.111 2.24 0.00 43.26 3.66
40 41 2.031919 GTCGGCCACACACATGGA 59.968 61.111 2.24 0.00 43.02 3.41
41 42 1.377202 GTCGGCCACACACATGGAT 60.377 57.895 2.24 0.00 43.02 3.41
42 43 1.078497 TCGGCCACACACATGGATC 60.078 57.895 2.24 0.00 43.02 3.36
43 44 1.078214 CGGCCACACACATGGATCT 60.078 57.895 2.24 0.00 43.02 2.75
44 45 1.091771 CGGCCACACACATGGATCTC 61.092 60.000 2.24 0.00 43.02 2.75
45 46 0.749454 GGCCACACACATGGATCTCC 60.749 60.000 0.00 0.00 43.02 3.71
46 47 1.091771 GCCACACACATGGATCTCCG 61.092 60.000 0.00 0.00 43.02 4.63
47 48 0.250234 CCACACACATGGATCTCCGT 59.750 55.000 0.00 0.00 43.02 4.69
48 49 1.645034 CACACACATGGATCTCCGTC 58.355 55.000 0.00 0.00 39.43 4.79
49 50 1.205655 CACACACATGGATCTCCGTCT 59.794 52.381 0.00 0.00 39.43 4.18
50 51 1.902508 ACACACATGGATCTCCGTCTT 59.097 47.619 0.00 0.00 39.43 3.01
51 52 2.274437 CACACATGGATCTCCGTCTTG 58.726 52.381 0.00 0.00 39.43 3.02
52 53 1.208052 ACACATGGATCTCCGTCTTGG 59.792 52.381 0.00 0.00 39.43 3.61
53 54 0.833287 ACATGGATCTCCGTCTTGGG 59.167 55.000 0.00 0.00 39.43 4.12
54 55 0.533755 CATGGATCTCCGTCTTGGGC 60.534 60.000 0.00 0.00 39.43 5.36
55 56 0.692419 ATGGATCTCCGTCTTGGGCT 60.692 55.000 0.00 0.00 39.43 5.19
56 57 1.144936 GGATCTCCGTCTTGGGCTG 59.855 63.158 0.00 0.00 38.76 4.85
57 58 1.617947 GGATCTCCGTCTTGGGCTGT 61.618 60.000 0.00 0.00 38.76 4.40
58 59 0.179097 GATCTCCGTCTTGGGCTGTC 60.179 60.000 0.00 0.00 38.76 3.51
59 60 1.949847 ATCTCCGTCTTGGGCTGTCG 61.950 60.000 0.00 0.00 38.76 4.35
60 61 2.915659 TCCGTCTTGGGCTGTCGT 60.916 61.111 0.00 0.00 38.76 4.34
61 62 2.432628 CCGTCTTGGGCTGTCGTC 60.433 66.667 0.00 0.00 0.00 4.20
62 63 2.805353 CGTCTTGGGCTGTCGTCG 60.805 66.667 0.00 0.00 0.00 5.12
63 64 3.112709 GTCTTGGGCTGTCGTCGC 61.113 66.667 0.00 0.00 0.00 5.19
64 65 3.303135 TCTTGGGCTGTCGTCGCT 61.303 61.111 0.00 0.00 0.00 4.93
65 66 3.114616 CTTGGGCTGTCGTCGCTG 61.115 66.667 0.00 0.00 0.00 5.18
66 67 4.680237 TTGGGCTGTCGTCGCTGG 62.680 66.667 0.00 0.00 0.00 4.85
69 70 4.148825 GGCTGTCGTCGCTGGGAT 62.149 66.667 0.00 0.00 0.00 3.85
70 71 2.583593 GCTGTCGTCGCTGGGATC 60.584 66.667 0.00 0.00 0.00 3.36
71 72 3.069980 GCTGTCGTCGCTGGGATCT 62.070 63.158 0.00 0.00 0.00 2.75
72 73 1.725557 GCTGTCGTCGCTGGGATCTA 61.726 60.000 0.00 0.00 0.00 1.98
73 74 0.955178 CTGTCGTCGCTGGGATCTAT 59.045 55.000 0.00 0.00 0.00 1.98
74 75 0.668535 TGTCGTCGCTGGGATCTATG 59.331 55.000 0.00 0.00 0.00 2.23
75 76 0.952280 GTCGTCGCTGGGATCTATGA 59.048 55.000 0.00 0.00 0.00 2.15
76 77 1.068885 GTCGTCGCTGGGATCTATGAG 60.069 57.143 0.00 0.00 0.00 2.90
77 78 0.387878 CGTCGCTGGGATCTATGAGC 60.388 60.000 0.00 0.00 0.00 4.26
78 79 0.037790 GTCGCTGGGATCTATGAGCC 60.038 60.000 0.00 0.00 37.39 4.70
79 80 1.080230 CGCTGGGATCTATGAGCCG 60.080 63.158 0.00 0.00 39.27 5.52
80 81 1.375268 GCTGGGATCTATGAGCCGC 60.375 63.158 0.00 0.00 39.27 6.53
81 82 1.294780 CTGGGATCTATGAGCCGCC 59.705 63.158 0.00 0.00 39.27 6.13
82 83 1.152247 TGGGATCTATGAGCCGCCT 60.152 57.895 0.00 0.00 39.27 5.52
83 84 1.188219 TGGGATCTATGAGCCGCCTC 61.188 60.000 0.00 0.00 39.27 4.70
84 85 0.902516 GGGATCTATGAGCCGCCTCT 60.903 60.000 0.00 0.00 39.27 3.69
85 86 0.246086 GGATCTATGAGCCGCCTCTG 59.754 60.000 0.00 0.00 38.93 3.35
86 87 0.246086 GATCTATGAGCCGCCTCTGG 59.754 60.000 0.00 0.00 38.93 3.86
96 97 3.695606 GCCTCTGGCGTGTCTCCA 61.696 66.667 0.00 0.00 39.62 3.86
97 98 3.023949 GCCTCTGGCGTGTCTCCAT 62.024 63.158 0.00 0.00 39.62 3.41
98 99 1.142748 CCTCTGGCGTGTCTCCATC 59.857 63.158 0.00 0.00 32.37 3.51
99 100 1.226802 CTCTGGCGTGTCTCCATCG 60.227 63.158 0.00 0.00 32.37 3.84
100 101 1.657751 CTCTGGCGTGTCTCCATCGA 61.658 60.000 0.00 0.00 32.37 3.59
101 102 1.517257 CTGGCGTGTCTCCATCGAC 60.517 63.158 0.00 0.00 32.37 4.20
102 103 2.579787 GGCGTGTCTCCATCGACG 60.580 66.667 0.00 0.00 36.71 5.12
104 105 2.178273 CGTGTCTCCATCGACGCA 59.822 61.111 0.00 0.00 42.89 5.24
105 106 1.226688 CGTGTCTCCATCGACGCAT 60.227 57.895 0.00 0.00 42.89 4.73
106 107 1.474648 CGTGTCTCCATCGACGCATG 61.475 60.000 0.00 0.00 42.89 4.06
107 108 1.519234 TGTCTCCATCGACGCATGC 60.519 57.895 7.91 7.91 36.71 4.06
108 109 2.278792 TCTCCATCGACGCATGCG 60.279 61.111 36.79 36.79 46.03 4.73
109 110 3.993234 CTCCATCGACGCATGCGC 61.993 66.667 38.15 28.01 44.19 6.09
128 129 4.891727 GCATGTCGTCGGCGGGAT 62.892 66.667 10.62 0.00 38.89 3.85
129 130 2.961721 CATGTCGTCGGCGGGATG 60.962 66.667 10.62 8.44 38.89 3.51
130 131 3.458163 ATGTCGTCGGCGGGATGT 61.458 61.111 10.62 0.00 38.89 3.06
131 132 3.716539 ATGTCGTCGGCGGGATGTG 62.717 63.158 10.62 0.00 38.89 3.21
134 135 3.829044 CGTCGGCGGGATGTGGTA 61.829 66.667 7.21 0.00 0.00 3.25
135 136 2.106332 GTCGGCGGGATGTGGTAG 59.894 66.667 7.21 0.00 0.00 3.18
136 137 3.845259 TCGGCGGGATGTGGTAGC 61.845 66.667 7.21 0.00 0.00 3.58
137 138 4.910585 CGGCGGGATGTGGTAGCC 62.911 72.222 0.00 0.00 44.00 3.93
138 139 3.792736 GGCGGGATGTGGTAGCCA 61.793 66.667 0.00 0.00 46.48 4.75
139 140 2.203070 GCGGGATGTGGTAGCCAG 60.203 66.667 0.00 0.00 36.23 4.85
140 141 2.731571 GCGGGATGTGGTAGCCAGA 61.732 63.158 0.00 0.00 36.23 3.86
141 142 2.044806 GCGGGATGTGGTAGCCAGAT 62.045 60.000 0.00 0.00 40.34 2.90
142 143 1.338107 CGGGATGTGGTAGCCAGATA 58.662 55.000 0.00 0.00 37.65 1.98
143 144 1.902508 CGGGATGTGGTAGCCAGATAT 59.097 52.381 0.00 0.00 37.65 1.63
144 145 2.093973 CGGGATGTGGTAGCCAGATATC 60.094 54.545 0.00 0.00 37.65 1.63
145 146 3.177228 GGGATGTGGTAGCCAGATATCT 58.823 50.000 0.00 0.00 37.65 1.98
146 147 4.353777 GGGATGTGGTAGCCAGATATCTA 58.646 47.826 4.54 0.00 37.65 1.98
147 148 4.404073 GGGATGTGGTAGCCAGATATCTAG 59.596 50.000 4.54 0.00 37.65 2.43
148 149 4.404073 GGATGTGGTAGCCAGATATCTAGG 59.596 50.000 4.54 10.41 37.65 3.02
149 150 4.471078 TGTGGTAGCCAGATATCTAGGT 57.529 45.455 4.54 6.50 32.34 3.08
150 151 4.408276 TGTGGTAGCCAGATATCTAGGTC 58.592 47.826 4.54 6.30 32.34 3.85
151 152 3.764972 GTGGTAGCCAGATATCTAGGTCC 59.235 52.174 4.54 8.10 32.34 4.46
152 153 3.663136 TGGTAGCCAGATATCTAGGTCCT 59.337 47.826 4.54 0.00 0.00 3.85
153 154 4.020543 GGTAGCCAGATATCTAGGTCCTG 58.979 52.174 4.54 0.00 0.00 3.86
154 155 3.913370 AGCCAGATATCTAGGTCCTGT 57.087 47.619 4.54 0.00 0.00 4.00
155 156 4.206244 AGCCAGATATCTAGGTCCTGTT 57.794 45.455 4.54 0.00 0.00 3.16
156 157 4.561752 AGCCAGATATCTAGGTCCTGTTT 58.438 43.478 4.54 0.00 0.00 2.83
157 158 4.346418 AGCCAGATATCTAGGTCCTGTTTG 59.654 45.833 4.54 0.00 0.00 2.93
158 159 4.636249 CCAGATATCTAGGTCCTGTTTGC 58.364 47.826 4.54 0.00 0.00 3.68
159 160 4.101585 CCAGATATCTAGGTCCTGTTTGCA 59.898 45.833 4.54 0.00 0.00 4.08
160 161 5.396772 CCAGATATCTAGGTCCTGTTTGCAA 60.397 44.000 4.54 0.00 0.00 4.08
161 162 5.525378 CAGATATCTAGGTCCTGTTTGCAAC 59.475 44.000 4.54 0.00 0.00 4.17
162 163 2.561478 TCTAGGTCCTGTTTGCAACC 57.439 50.000 0.00 0.00 0.00 3.77
163 164 1.156736 CTAGGTCCTGTTTGCAACCG 58.843 55.000 0.00 0.00 36.87 4.44
164 165 0.250553 TAGGTCCTGTTTGCAACCGG 60.251 55.000 0.00 0.00 36.87 5.28
165 166 1.527380 GGTCCTGTTTGCAACCGGA 60.527 57.895 9.46 5.47 41.68 5.14
166 167 1.515521 GGTCCTGTTTGCAACCGGAG 61.516 60.000 9.46 0.15 44.04 4.63
167 168 0.818040 GTCCTGTTTGCAACCGGAGT 60.818 55.000 9.46 0.00 44.04 3.85
168 169 0.106918 TCCTGTTTGCAACCGGAGTT 60.107 50.000 9.46 0.00 39.47 3.01
180 181 3.967715 GGAGTTGCCGAGTTGGAC 58.032 61.111 0.00 0.00 42.00 4.02
181 182 1.371558 GGAGTTGCCGAGTTGGACT 59.628 57.895 0.00 0.00 42.00 3.85
182 183 0.951040 GGAGTTGCCGAGTTGGACTG 60.951 60.000 0.00 0.00 42.00 3.51
183 184 0.951040 GAGTTGCCGAGTTGGACTGG 60.951 60.000 0.00 0.00 42.00 4.00
184 185 2.281484 TTGCCGAGTTGGACTGGC 60.281 61.111 0.00 11.89 42.00 4.85
185 186 3.113514 TTGCCGAGTTGGACTGGCA 62.114 57.895 15.42 15.42 44.57 4.92
186 187 2.743928 GCCGAGTTGGACTGGCAG 60.744 66.667 14.16 14.16 40.07 4.85
187 188 2.046892 CCGAGTTGGACTGGCAGG 60.047 66.667 20.34 0.58 42.00 4.85
188 189 2.583441 CCGAGTTGGACTGGCAGGA 61.583 63.158 20.34 0.00 42.00 3.86
189 190 1.079543 CGAGTTGGACTGGCAGGAG 60.080 63.158 20.34 0.00 0.00 3.69
190 191 1.536073 CGAGTTGGACTGGCAGGAGA 61.536 60.000 20.34 0.00 0.00 3.71
191 192 0.687354 GAGTTGGACTGGCAGGAGAA 59.313 55.000 20.34 4.86 0.00 2.87
192 193 1.280421 GAGTTGGACTGGCAGGAGAAT 59.720 52.381 20.34 0.00 0.00 2.40
193 194 1.004044 AGTTGGACTGGCAGGAGAATG 59.996 52.381 20.34 0.00 0.00 2.67
194 195 1.003580 GTTGGACTGGCAGGAGAATGA 59.996 52.381 20.34 0.00 0.00 2.57
195 196 1.588239 TGGACTGGCAGGAGAATGAT 58.412 50.000 20.34 0.00 0.00 2.45
196 197 1.918262 TGGACTGGCAGGAGAATGATT 59.082 47.619 20.34 0.00 0.00 2.57
197 198 2.092753 TGGACTGGCAGGAGAATGATTC 60.093 50.000 20.34 3.40 0.00 2.52
198 199 2.092753 GGACTGGCAGGAGAATGATTCA 60.093 50.000 20.34 0.00 0.00 2.57
199 200 3.204526 GACTGGCAGGAGAATGATTCAG 58.795 50.000 20.34 0.00 0.00 3.02
200 201 2.092538 ACTGGCAGGAGAATGATTCAGG 60.093 50.000 20.34 0.00 0.00 3.86
201 202 2.172082 CTGGCAGGAGAATGATTCAGGA 59.828 50.000 6.61 0.00 0.00 3.86
202 203 2.172082 TGGCAGGAGAATGATTCAGGAG 59.828 50.000 8.03 0.00 0.00 3.69
203 204 2.220313 GCAGGAGAATGATTCAGGAGC 58.780 52.381 8.03 2.79 0.00 4.70
204 205 2.848691 CAGGAGAATGATTCAGGAGCC 58.151 52.381 8.03 1.14 0.00 4.70
205 206 1.415659 AGGAGAATGATTCAGGAGCCG 59.584 52.381 8.03 0.00 0.00 5.52
206 207 1.542108 GGAGAATGATTCAGGAGCCGG 60.542 57.143 8.03 0.00 0.00 6.13
207 208 1.414181 GAGAATGATTCAGGAGCCGGA 59.586 52.381 5.05 0.00 0.00 5.14
208 209 1.415659 AGAATGATTCAGGAGCCGGAG 59.584 52.381 5.05 0.00 0.00 4.63
221 222 3.775654 CGGAGGTGGGAGACAGGC 61.776 72.222 0.00 0.00 0.00 4.85
222 223 3.403558 GGAGGTGGGAGACAGGCC 61.404 72.222 0.00 0.00 0.00 5.19
223 224 2.607750 GAGGTGGGAGACAGGCCA 60.608 66.667 5.01 0.00 0.00 5.36
224 225 2.608988 AGGTGGGAGACAGGCCAG 60.609 66.667 5.01 0.00 0.00 4.85
225 226 3.721706 GGTGGGAGACAGGCCAGG 61.722 72.222 5.01 0.00 0.00 4.45
226 227 3.721706 GTGGGAGACAGGCCAGGG 61.722 72.222 5.01 0.00 0.00 4.45
228 229 4.741239 GGGAGACAGGCCAGGGGA 62.741 72.222 5.01 0.00 0.00 4.81
229 230 2.367512 GGAGACAGGCCAGGGGAT 60.368 66.667 5.01 0.00 0.00 3.85
230 231 2.750657 GGAGACAGGCCAGGGGATG 61.751 68.421 5.01 0.00 0.00 3.51
231 232 1.690633 GAGACAGGCCAGGGGATGA 60.691 63.158 5.01 0.00 0.00 2.92
232 233 1.692042 AGACAGGCCAGGGGATGAG 60.692 63.158 5.01 0.00 0.00 2.90
233 234 2.693864 ACAGGCCAGGGGATGAGG 60.694 66.667 5.01 0.00 0.00 3.86
234 235 3.496160 CAGGCCAGGGGATGAGGG 61.496 72.222 5.01 0.00 0.00 4.30
235 236 3.710631 AGGCCAGGGGATGAGGGA 61.711 66.667 5.01 0.00 0.00 4.20
236 237 2.451294 GGCCAGGGGATGAGGGAT 60.451 66.667 0.00 0.00 0.00 3.85
237 238 2.533463 GGCCAGGGGATGAGGGATC 61.533 68.421 0.00 0.00 0.00 3.36
238 239 1.463018 GCCAGGGGATGAGGGATCT 60.463 63.158 0.00 0.00 0.00 2.75
239 240 1.064824 GCCAGGGGATGAGGGATCTT 61.065 60.000 0.00 0.00 0.00 2.40
240 241 1.527457 CCAGGGGATGAGGGATCTTT 58.473 55.000 0.00 0.00 0.00 2.52
241 242 1.855599 CCAGGGGATGAGGGATCTTTT 59.144 52.381 0.00 0.00 0.00 2.27
242 243 2.158549 CCAGGGGATGAGGGATCTTTTC 60.159 54.545 0.00 0.00 0.00 2.29
243 244 1.771255 AGGGGATGAGGGATCTTTTCG 59.229 52.381 0.00 0.00 0.00 3.46
244 245 1.598882 GGGATGAGGGATCTTTTCGC 58.401 55.000 0.00 0.00 37.56 4.70
245 246 1.134098 GGGATGAGGGATCTTTTCGCA 60.134 52.381 0.00 0.00 39.69 5.10
246 247 2.643551 GGATGAGGGATCTTTTCGCAA 58.356 47.619 0.00 0.00 39.69 4.85
247 248 3.016736 GGATGAGGGATCTTTTCGCAAA 58.983 45.455 0.00 0.00 39.69 3.68
248 249 3.633986 GGATGAGGGATCTTTTCGCAAAT 59.366 43.478 0.00 0.00 39.69 2.32
249 250 4.261363 GGATGAGGGATCTTTTCGCAAATC 60.261 45.833 0.00 0.00 39.69 2.17
250 251 2.677836 TGAGGGATCTTTTCGCAAATCG 59.322 45.455 0.00 0.00 39.69 3.34
251 252 1.401905 AGGGATCTTTTCGCAAATCGC 59.598 47.619 0.00 0.00 39.69 4.58
252 253 1.132262 GGGATCTTTTCGCAAATCGCA 59.868 47.619 0.00 0.00 42.60 5.10
253 254 2.223572 GGGATCTTTTCGCAAATCGCAT 60.224 45.455 0.00 0.00 42.60 4.73
254 255 3.003275 GGGATCTTTTCGCAAATCGCATA 59.997 43.478 0.00 0.00 42.60 3.14
255 256 4.214437 GGATCTTTTCGCAAATCGCATAG 58.786 43.478 0.00 0.00 42.60 2.23
256 257 3.673746 TCTTTTCGCAAATCGCATAGG 57.326 42.857 0.00 0.00 42.60 2.57
257 258 3.006940 TCTTTTCGCAAATCGCATAGGT 58.993 40.909 0.00 0.00 42.60 3.08
258 259 2.823196 TTTCGCAAATCGCATAGGTG 57.177 45.000 0.00 0.00 42.60 4.00
259 260 2.017138 TTCGCAAATCGCATAGGTGA 57.983 45.000 0.00 0.00 42.60 4.02
260 261 1.570813 TCGCAAATCGCATAGGTGAG 58.429 50.000 0.00 0.00 42.60 3.51
261 262 0.041839 CGCAAATCGCATAGGTGAGC 60.042 55.000 0.00 0.00 42.60 4.26
262 263 1.303309 GCAAATCGCATAGGTGAGCT 58.697 50.000 0.00 0.00 41.79 4.09
263 264 1.003116 GCAAATCGCATAGGTGAGCTG 60.003 52.381 0.00 0.00 41.79 4.24
264 265 1.600957 CAAATCGCATAGGTGAGCTGG 59.399 52.381 0.00 0.00 36.89 4.85
265 266 0.107456 AATCGCATAGGTGAGCTGGG 59.893 55.000 0.00 0.00 36.89 4.45
266 267 1.050988 ATCGCATAGGTGAGCTGGGT 61.051 55.000 0.00 0.00 36.89 4.51
267 268 1.221840 CGCATAGGTGAGCTGGGTT 59.778 57.895 0.00 0.00 0.00 4.11
268 269 1.091771 CGCATAGGTGAGCTGGGTTG 61.092 60.000 0.00 0.00 0.00 3.77
269 270 0.749454 GCATAGGTGAGCTGGGTTGG 60.749 60.000 0.00 0.00 0.00 3.77
270 271 0.911769 CATAGGTGAGCTGGGTTGGA 59.088 55.000 0.00 0.00 0.00 3.53
271 272 1.134280 CATAGGTGAGCTGGGTTGGAG 60.134 57.143 0.00 0.00 0.00 3.86
272 273 0.909610 TAGGTGAGCTGGGTTGGAGG 60.910 60.000 0.00 0.00 0.00 4.30
273 274 2.360475 GTGAGCTGGGTTGGAGGC 60.360 66.667 0.00 0.00 0.00 4.70
274 275 4.020617 TGAGCTGGGTTGGAGGCG 62.021 66.667 0.00 0.00 0.00 5.52
275 276 4.785453 GAGCTGGGTTGGAGGCGG 62.785 72.222 0.00 0.00 0.00 6.13
282 283 4.699522 GTTGGAGGCGGGCGTCTT 62.700 66.667 12.44 0.00 0.00 3.01
283 284 3.948719 TTGGAGGCGGGCGTCTTT 61.949 61.111 12.44 0.00 0.00 2.52
284 285 3.485346 TTGGAGGCGGGCGTCTTTT 62.485 57.895 12.44 0.00 0.00 2.27
285 286 2.671963 GGAGGCGGGCGTCTTTTT 60.672 61.111 12.44 0.00 0.00 1.94
286 287 2.561373 GAGGCGGGCGTCTTTTTG 59.439 61.111 6.14 0.00 0.00 2.44
287 288 3.610791 GAGGCGGGCGTCTTTTTGC 62.611 63.158 6.14 0.00 0.00 3.68
288 289 3.972276 GGCGGGCGTCTTTTTGCA 61.972 61.111 0.00 0.00 0.00 4.08
289 290 2.026879 GCGGGCGTCTTTTTGCAA 59.973 55.556 0.00 0.00 0.00 4.08
290 291 2.016165 GCGGGCGTCTTTTTGCAAG 61.016 57.895 0.00 0.00 0.00 4.01
291 292 1.652012 CGGGCGTCTTTTTGCAAGA 59.348 52.632 0.00 0.00 0.00 3.02
292 293 0.030101 CGGGCGTCTTTTTGCAAGAA 59.970 50.000 0.00 0.00 0.00 2.52
293 294 1.335872 CGGGCGTCTTTTTGCAAGAAT 60.336 47.619 2.48 0.00 0.00 2.40
294 295 2.754472 GGGCGTCTTTTTGCAAGAATT 58.246 42.857 2.48 0.00 0.00 2.17
311 312 6.655078 AAGAATTGAGCCAACAAACTACAT 57.345 33.333 0.00 0.00 33.44 2.29
312 313 6.017400 AGAATTGAGCCAACAAACTACATG 57.983 37.500 0.00 0.00 33.44 3.21
313 314 3.641437 TTGAGCCAACAAACTACATGC 57.359 42.857 0.00 0.00 0.00 4.06
314 315 1.535028 TGAGCCAACAAACTACATGCG 59.465 47.619 0.00 0.00 0.00 4.73
315 316 0.240945 AGCCAACAAACTACATGCGC 59.759 50.000 0.00 0.00 0.00 6.09
316 317 0.039617 GCCAACAAACTACATGCGCA 60.040 50.000 14.96 14.96 0.00 6.09
317 318 1.967762 CCAACAAACTACATGCGCAG 58.032 50.000 18.32 10.85 0.00 5.18
318 319 1.401409 CCAACAAACTACATGCGCAGG 60.401 52.381 22.13 22.13 0.00 4.85
319 320 1.535028 CAACAAACTACATGCGCAGGA 59.465 47.619 30.79 10.42 0.00 3.86
320 321 2.113860 ACAAACTACATGCGCAGGAT 57.886 45.000 30.79 15.31 41.30 3.24
321 322 2.436417 ACAAACTACATGCGCAGGATT 58.564 42.857 30.79 16.34 35.32 3.01
322 323 2.819608 ACAAACTACATGCGCAGGATTT 59.180 40.909 30.79 20.95 35.32 2.17
323 324 3.173599 CAAACTACATGCGCAGGATTTG 58.826 45.455 30.79 26.80 35.32 2.32
324 325 2.401583 ACTACATGCGCAGGATTTGA 57.598 45.000 30.79 7.10 35.32 2.69
325 326 2.923121 ACTACATGCGCAGGATTTGAT 58.077 42.857 30.79 7.52 35.32 2.57
326 327 3.282021 ACTACATGCGCAGGATTTGATT 58.718 40.909 30.79 6.69 35.32 2.57
327 328 2.857592 ACATGCGCAGGATTTGATTC 57.142 45.000 30.79 0.00 35.32 2.52
328 329 1.064505 ACATGCGCAGGATTTGATTCG 59.935 47.619 30.79 0.00 35.32 3.34
329 330 0.664761 ATGCGCAGGATTTGATTCGG 59.335 50.000 18.32 0.00 31.39 4.30
330 331 0.392327 TGCGCAGGATTTGATTCGGA 60.392 50.000 5.66 0.00 0.00 4.55
331 332 0.947244 GCGCAGGATTTGATTCGGAT 59.053 50.000 0.30 0.00 0.00 4.18
332 333 1.334419 GCGCAGGATTTGATTCGGATG 60.334 52.381 0.30 0.00 0.00 3.51
333 334 1.265095 CGCAGGATTTGATTCGGATGG 59.735 52.381 0.00 0.00 0.00 3.51
334 335 2.575532 GCAGGATTTGATTCGGATGGA 58.424 47.619 0.00 0.00 0.00 3.41
335 336 3.152341 GCAGGATTTGATTCGGATGGAT 58.848 45.455 0.00 0.00 0.00 3.41
336 337 3.057736 GCAGGATTTGATTCGGATGGATG 60.058 47.826 0.00 0.00 0.00 3.51
337 338 3.504906 CAGGATTTGATTCGGATGGATGG 59.495 47.826 0.00 0.00 0.00 3.51
338 339 3.139025 AGGATTTGATTCGGATGGATGGT 59.861 43.478 0.00 0.00 0.00 3.55
339 340 4.350816 AGGATTTGATTCGGATGGATGGTA 59.649 41.667 0.00 0.00 0.00 3.25
340 341 4.697352 GGATTTGATTCGGATGGATGGTAG 59.303 45.833 0.00 0.00 0.00 3.18
341 342 2.839486 TGATTCGGATGGATGGTAGC 57.161 50.000 0.00 0.00 0.00 3.58
342 343 1.000843 TGATTCGGATGGATGGTAGCG 59.999 52.381 0.00 0.00 0.00 4.26
343 344 1.272490 GATTCGGATGGATGGTAGCGA 59.728 52.381 0.00 0.00 0.00 4.93
344 345 1.116308 TTCGGATGGATGGTAGCGAA 58.884 50.000 0.00 0.00 0.00 4.70
345 346 0.673985 TCGGATGGATGGTAGCGAAG 59.326 55.000 0.00 0.00 0.00 3.79
346 347 0.319900 CGGATGGATGGTAGCGAAGG 60.320 60.000 0.00 0.00 0.00 3.46
347 348 0.035458 GGATGGATGGTAGCGAAGGG 59.965 60.000 0.00 0.00 0.00 3.95
348 349 1.048601 GATGGATGGTAGCGAAGGGA 58.951 55.000 0.00 0.00 0.00 4.20
349 350 1.625818 GATGGATGGTAGCGAAGGGAT 59.374 52.381 0.00 0.00 0.00 3.85
350 351 0.758734 TGGATGGTAGCGAAGGGATG 59.241 55.000 0.00 0.00 0.00 3.51
351 352 0.603975 GGATGGTAGCGAAGGGATGC 60.604 60.000 0.00 0.00 0.00 3.91
352 353 0.106708 GATGGTAGCGAAGGGATGCA 59.893 55.000 0.00 0.00 0.00 3.96
353 354 0.107456 ATGGTAGCGAAGGGATGCAG 59.893 55.000 0.00 0.00 0.00 4.41
354 355 1.227674 GGTAGCGAAGGGATGCAGG 60.228 63.158 0.00 0.00 0.00 4.85
355 356 1.227674 GTAGCGAAGGGATGCAGGG 60.228 63.158 0.00 0.00 0.00 4.45
356 357 2.443394 TAGCGAAGGGATGCAGGGG 61.443 63.158 0.00 0.00 0.00 4.79
357 358 4.115199 GCGAAGGGATGCAGGGGT 62.115 66.667 0.00 0.00 0.00 4.95
358 359 2.124570 CGAAGGGATGCAGGGGTG 60.125 66.667 0.00 0.00 0.00 4.61
359 360 2.440980 GAAGGGATGCAGGGGTGC 60.441 66.667 0.00 0.00 0.00 5.01
368 369 2.340809 CAGGGGTGCACGAACGTA 59.659 61.111 11.45 0.00 0.00 3.57
369 370 1.736645 CAGGGGTGCACGAACGTAG 60.737 63.158 11.45 0.00 0.00 3.51
371 372 1.735559 GGGGTGCACGAACGTAGTC 60.736 63.158 11.45 0.00 45.00 2.59
372 373 1.007038 GGGTGCACGAACGTAGTCA 60.007 57.895 11.45 0.00 45.00 3.41
373 374 1.007336 GGGTGCACGAACGTAGTCAG 61.007 60.000 11.45 0.00 45.00 3.51
374 375 0.039798 GGTGCACGAACGTAGTCAGA 60.040 55.000 11.45 0.00 45.00 3.27
375 376 1.402456 GGTGCACGAACGTAGTCAGAT 60.402 52.381 11.45 0.00 45.00 2.90
376 377 2.325761 GTGCACGAACGTAGTCAGATT 58.674 47.619 0.00 0.00 45.00 2.40
377 378 2.341760 GTGCACGAACGTAGTCAGATTC 59.658 50.000 0.00 0.00 45.00 2.52
378 379 2.030628 TGCACGAACGTAGTCAGATTCA 60.031 45.455 0.00 0.00 45.00 2.57
379 380 3.179830 GCACGAACGTAGTCAGATTCAT 58.820 45.455 0.00 0.00 45.00 2.57
380 381 4.142556 TGCACGAACGTAGTCAGATTCATA 60.143 41.667 0.00 0.00 45.00 2.15
381 382 4.438145 GCACGAACGTAGTCAGATTCATAG 59.562 45.833 0.00 0.00 45.00 2.23
382 383 4.970611 CACGAACGTAGTCAGATTCATAGG 59.029 45.833 0.00 0.00 45.00 2.57
383 384 4.880120 ACGAACGTAGTCAGATTCATAGGA 59.120 41.667 0.00 0.00 45.00 2.94
384 385 5.531659 ACGAACGTAGTCAGATTCATAGGAT 59.468 40.000 0.00 0.00 45.00 3.24
385 386 6.709397 ACGAACGTAGTCAGATTCATAGGATA 59.291 38.462 0.00 0.00 45.00 2.59
386 387 7.016466 CGAACGTAGTCAGATTCATAGGATAC 58.984 42.308 0.00 0.00 45.00 2.24
387 388 6.483385 ACGTAGTCAGATTCATAGGATACG 57.517 41.667 3.68 3.68 29.74 3.06
388 389 6.228995 ACGTAGTCAGATTCATAGGATACGA 58.771 40.000 10.36 0.00 29.74 3.43
389 390 6.147492 ACGTAGTCAGATTCATAGGATACGAC 59.853 42.308 10.36 1.41 29.74 4.34
390 391 5.614923 AGTCAGATTCATAGGATACGACG 57.385 43.478 0.00 0.00 46.39 5.12
391 392 4.083217 AGTCAGATTCATAGGATACGACGC 60.083 45.833 0.00 0.00 46.39 5.19
392 393 3.190744 TCAGATTCATAGGATACGACGCC 59.809 47.826 0.00 0.00 46.39 5.68
446 448 8.641155 CAAGTGCAATTAGTTATGAACATTGTG 58.359 33.333 0.00 0.00 31.22 3.33
480 482 6.578020 TTGAATTATAGTAGTTGTTCGCGG 57.422 37.500 6.13 0.00 0.00 6.46
481 483 5.045215 TGAATTATAGTAGTTGTTCGCGGG 58.955 41.667 6.13 0.00 0.00 6.13
482 484 3.441496 TTATAGTAGTTGTTCGCGGGG 57.559 47.619 6.13 0.00 0.00 5.73
483 485 0.179092 ATAGTAGTTGTTCGCGGGGC 60.179 55.000 6.13 0.00 0.00 5.80
484 486 1.252904 TAGTAGTTGTTCGCGGGGCT 61.253 55.000 6.13 0.38 0.00 5.19
485 487 2.047655 TAGTTGTTCGCGGGGCTG 60.048 61.111 6.13 0.00 0.00 4.85
486 488 3.599285 TAGTTGTTCGCGGGGCTGG 62.599 63.158 6.13 0.00 0.00 4.85
520 870 1.807573 GTGAGCTGCTACCTGCGAC 60.808 63.158 0.15 0.00 46.63 5.19
633 3832 7.223582 CAGATAAGCTTTACTCGATGACAATGT 59.776 37.037 3.20 0.00 0.00 2.71
634 3833 8.414003 AGATAAGCTTTACTCGATGACAATGTA 58.586 33.333 3.20 0.00 0.00 2.29
635 3834 9.197694 GATAAGCTTTACTCGATGACAATGTAT 57.802 33.333 3.20 0.00 0.00 2.29
670 3872 7.043961 ACAGAATCGATGAGTGTATATGTGT 57.956 36.000 0.00 0.00 0.00 3.72
733 3939 4.460731 TGTGAAATATGGTCAAATGGCGAA 59.539 37.500 0.00 0.00 0.00 4.70
809 4015 1.079127 ACACACACGGCTAGCATCC 60.079 57.895 18.24 0.00 0.00 3.51
810 4016 1.079197 CACACACGGCTAGCATCCA 60.079 57.895 18.24 0.00 0.00 3.41
811 4017 0.462581 CACACACGGCTAGCATCCAT 60.463 55.000 18.24 0.00 0.00 3.41
812 4018 0.179073 ACACACGGCTAGCATCCATC 60.179 55.000 18.24 0.00 0.00 3.51
1157 4367 2.478539 GCCCGATCTGCAAACAAGAATC 60.479 50.000 0.00 0.00 0.00 2.52
1185 4410 3.419264 AAACATACGTACGCGGTATGA 57.581 42.857 28.85 7.68 43.45 2.15
1397 4622 1.705337 GGTTGGACACGATGATGCCG 61.705 60.000 0.00 0.00 0.00 5.69
1521 4746 3.518634 AAGAAGAAGAGATGGCGAGAC 57.481 47.619 0.00 0.00 0.00 3.36
1677 4902 2.892425 GCCTGCAACCGATCGAGG 60.892 66.667 18.66 15.84 37.30 4.63
1691 4916 4.116961 CGATCGAGGTGGTAAGCAAAATA 58.883 43.478 10.26 0.00 0.00 1.40
1709 4934 5.705813 AAATATGCAACGTCGATTTCGTA 57.294 34.783 0.00 0.00 40.69 3.43
1717 4942 1.850441 CGTCGATTTCGTAAAGCCGAT 59.150 47.619 0.00 0.00 40.80 4.18
1731 4964 1.169034 GCCGATGGAGGAATGAAGGC 61.169 60.000 0.00 0.00 36.32 4.35
1732 4965 0.882042 CCGATGGAGGAATGAAGGCG 60.882 60.000 0.00 0.00 0.00 5.52
1735 4968 1.281925 ATGGAGGAATGAAGGCGGGT 61.282 55.000 0.00 0.00 0.00 5.28
1737 4970 1.602237 GAGGAATGAAGGCGGGTGA 59.398 57.895 0.00 0.00 0.00 4.02
1738 4971 0.181350 GAGGAATGAAGGCGGGTGAT 59.819 55.000 0.00 0.00 0.00 3.06
1739 4972 0.181350 AGGAATGAAGGCGGGTGATC 59.819 55.000 0.00 0.00 0.00 2.92
1998 5233 2.360165 CAGGCAACCAAGATGATTAGCC 59.640 50.000 0.00 0.00 41.08 3.93
2008 5243 5.012458 CCAAGATGATTAGCCTCAGATACCA 59.988 44.000 0.00 0.00 0.00 3.25
2009 5244 6.296317 CCAAGATGATTAGCCTCAGATACCAT 60.296 42.308 0.00 0.00 0.00 3.55
2010 5245 6.297080 AGATGATTAGCCTCAGATACCATG 57.703 41.667 0.00 0.00 0.00 3.66
2011 5246 6.021672 AGATGATTAGCCTCAGATACCATGA 58.978 40.000 0.00 0.00 0.00 3.07
2012 5247 6.673097 AGATGATTAGCCTCAGATACCATGAT 59.327 38.462 0.00 0.00 0.00 2.45
2013 5248 6.046290 TGATTAGCCTCAGATACCATGATG 57.954 41.667 0.00 0.00 0.00 3.07
2014 5249 2.855209 AGCCTCAGATACCATGATGC 57.145 50.000 0.00 0.00 38.24 3.91
2015 5250 2.052468 AGCCTCAGATACCATGATGCA 58.948 47.619 0.00 0.00 39.79 3.96
2016 5251 2.149578 GCCTCAGATACCATGATGCAC 58.850 52.381 0.00 0.00 37.97 4.57
2028 5263 1.944032 TGATGCACCATCGATCTGTG 58.056 50.000 16.62 16.62 43.14 3.66
2029 5264 1.481772 TGATGCACCATCGATCTGTGA 59.518 47.619 22.53 11.62 43.14 3.58
2045 5292 3.189495 TCTGTGAGACACGAACAGAGATC 59.811 47.826 0.76 0.00 44.01 2.75
2117 5364 2.752238 ACCTCCTCCACGCTCGAG 60.752 66.667 8.45 8.45 0.00 4.04
2142 5389 2.125912 ACGATGACAGCGTCTGGC 60.126 61.111 13.89 8.46 40.49 4.85
2198 5445 2.006169 GATCACACACACACACACACA 58.994 47.619 0.00 0.00 0.00 3.72
2203 5450 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2206 5453 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2208 5455 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2210 5457 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2212 5459 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2213 5460 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2214 5461 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2215 5462 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2216 5463 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2218 5465 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2219 5466 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2220 5467 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2221 5468 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2222 5469 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2223 5470 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2224 5471 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2225 5472 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2226 5473 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2227 5474 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
2228 5475 1.535028 ACACACACACACACACACAAG 59.465 47.619 0.00 0.00 0.00 3.16
2233 5480 1.803555 CACACACACACACAAGACACA 59.196 47.619 0.00 0.00 0.00 3.72
2335 5669 7.638444 TCCTGAATTAATCAATACACAAGGGA 58.362 34.615 0.00 0.00 37.67 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.586357 GTCTCATCGGCCGCCTTC 60.586 66.667 23.51 4.65 0.00 3.46
1 2 4.514577 CGTCTCATCGGCCGCCTT 62.515 66.667 23.51 4.48 0.00 4.35
9 10 2.278206 CGACTGGCCGTCTCATCG 60.278 66.667 20.38 9.96 40.59 3.84
10 11 2.105128 CCGACTGGCCGTCTCATC 59.895 66.667 20.38 2.77 40.59 2.92
20 21 2.032528 ATGTGTGTGGCCGACTGG 59.967 61.111 0.00 0.00 38.77 4.00
21 22 2.327343 CCATGTGTGTGGCCGACTG 61.327 63.158 0.00 0.00 31.43 3.51
22 23 1.841302 ATCCATGTGTGTGGCCGACT 61.841 55.000 0.00 0.00 39.19 4.18
23 24 1.369091 GATCCATGTGTGTGGCCGAC 61.369 60.000 0.00 0.00 39.19 4.79
24 25 1.078497 GATCCATGTGTGTGGCCGA 60.078 57.895 0.00 0.00 39.19 5.54
25 26 1.078214 AGATCCATGTGTGTGGCCG 60.078 57.895 0.00 0.00 39.19 6.13
26 27 0.749454 GGAGATCCATGTGTGTGGCC 60.749 60.000 0.00 0.00 39.19 5.36
27 28 1.091771 CGGAGATCCATGTGTGTGGC 61.092 60.000 0.00 0.00 39.19 5.01
28 29 0.250234 ACGGAGATCCATGTGTGTGG 59.750 55.000 0.00 0.00 40.76 4.17
29 30 1.205655 AGACGGAGATCCATGTGTGTG 59.794 52.381 0.00 0.00 35.14 3.82
30 31 1.561643 AGACGGAGATCCATGTGTGT 58.438 50.000 0.00 0.00 35.14 3.72
31 32 2.274437 CAAGACGGAGATCCATGTGTG 58.726 52.381 0.00 0.00 35.14 3.82
32 33 1.208052 CCAAGACGGAGATCCATGTGT 59.792 52.381 0.00 0.00 36.56 3.72
33 34 1.473965 CCCAAGACGGAGATCCATGTG 60.474 57.143 0.00 0.00 36.56 3.21
34 35 0.833287 CCCAAGACGGAGATCCATGT 59.167 55.000 0.00 0.00 36.56 3.21
35 36 0.533755 GCCCAAGACGGAGATCCATG 60.534 60.000 0.00 0.00 36.56 3.66
36 37 0.692419 AGCCCAAGACGGAGATCCAT 60.692 55.000 0.00 0.00 36.56 3.41
37 38 1.306141 AGCCCAAGACGGAGATCCA 60.306 57.895 0.00 0.00 36.56 3.41
38 39 1.144936 CAGCCCAAGACGGAGATCC 59.855 63.158 0.00 0.00 36.56 3.36
39 40 0.179097 GACAGCCCAAGACGGAGATC 60.179 60.000 0.00 0.00 36.56 2.75
40 41 1.901085 GACAGCCCAAGACGGAGAT 59.099 57.895 0.00 0.00 36.56 2.75
41 42 2.636412 CGACAGCCCAAGACGGAGA 61.636 63.158 0.00 0.00 36.56 3.71
42 43 2.125912 CGACAGCCCAAGACGGAG 60.126 66.667 0.00 0.00 36.56 4.63
43 44 2.915659 ACGACAGCCCAAGACGGA 60.916 61.111 0.00 0.00 36.56 4.69
44 45 2.432628 GACGACAGCCCAAGACGG 60.433 66.667 0.00 0.00 0.00 4.79
45 46 2.805353 CGACGACAGCCCAAGACG 60.805 66.667 0.00 0.00 0.00 4.18
46 47 3.112709 GCGACGACAGCCCAAGAC 61.113 66.667 0.00 0.00 0.00 3.01
47 48 3.303135 AGCGACGACAGCCCAAGA 61.303 61.111 0.00 0.00 34.64 3.02
48 49 3.114616 CAGCGACGACAGCCCAAG 61.115 66.667 0.00 0.00 34.64 3.61
49 50 4.680237 CCAGCGACGACAGCCCAA 62.680 66.667 0.00 0.00 34.64 4.12
52 53 4.148825 ATCCCAGCGACGACAGCC 62.149 66.667 0.00 0.00 34.64 4.85
53 54 1.725557 TAGATCCCAGCGACGACAGC 61.726 60.000 0.00 0.00 0.00 4.40
54 55 0.955178 ATAGATCCCAGCGACGACAG 59.045 55.000 0.00 0.00 0.00 3.51
55 56 0.668535 CATAGATCCCAGCGACGACA 59.331 55.000 0.00 0.00 0.00 4.35
56 57 0.952280 TCATAGATCCCAGCGACGAC 59.048 55.000 0.00 0.00 0.00 4.34
57 58 1.239347 CTCATAGATCCCAGCGACGA 58.761 55.000 0.00 0.00 0.00 4.20
58 59 0.387878 GCTCATAGATCCCAGCGACG 60.388 60.000 0.00 0.00 0.00 5.12
59 60 0.037790 GGCTCATAGATCCCAGCGAC 60.038 60.000 0.00 0.00 32.26 5.19
60 61 1.527433 CGGCTCATAGATCCCAGCGA 61.527 60.000 0.00 0.00 32.26 4.93
61 62 1.080230 CGGCTCATAGATCCCAGCG 60.080 63.158 0.00 0.00 32.26 5.18
62 63 1.375268 GCGGCTCATAGATCCCAGC 60.375 63.158 0.00 0.00 0.00 4.85
63 64 1.190833 AGGCGGCTCATAGATCCCAG 61.191 60.000 5.25 0.00 0.00 4.45
64 65 1.152247 AGGCGGCTCATAGATCCCA 60.152 57.895 5.25 0.00 0.00 4.37
65 66 0.902516 AGAGGCGGCTCATAGATCCC 60.903 60.000 36.63 10.95 0.00 3.85
66 67 0.246086 CAGAGGCGGCTCATAGATCC 59.754 60.000 36.63 11.69 0.00 3.36
67 68 0.246086 CCAGAGGCGGCTCATAGATC 59.754 60.000 36.63 12.69 0.00 2.75
68 69 2.360138 CCAGAGGCGGCTCATAGAT 58.640 57.895 36.63 16.34 0.00 1.98
69 70 3.862142 CCAGAGGCGGCTCATAGA 58.138 61.111 36.63 0.00 0.00 1.98
79 80 3.695606 TGGAGACACGCCAGAGGC 61.696 66.667 0.00 0.00 39.94 4.70
90 91 2.580470 CGCATGCGTCGATGGAGAC 61.580 63.158 31.33 0.00 37.76 3.36
91 92 2.278792 CGCATGCGTCGATGGAGA 60.279 61.111 31.33 0.00 34.35 3.71
92 93 3.993234 GCGCATGCGTCGATGGAG 61.993 66.667 37.54 10.41 42.09 3.86
111 112 4.891727 ATCCCGCCGACGACATGC 62.892 66.667 0.00 0.00 43.93 4.06
112 113 2.961721 CATCCCGCCGACGACATG 60.962 66.667 0.00 0.00 43.93 3.21
113 114 3.458163 ACATCCCGCCGACGACAT 61.458 61.111 0.00 0.00 43.93 3.06
114 115 4.429212 CACATCCCGCCGACGACA 62.429 66.667 0.00 0.00 43.93 4.35
117 118 3.768185 CTACCACATCCCGCCGACG 62.768 68.421 0.00 0.00 39.67 5.12
118 119 2.106332 CTACCACATCCCGCCGAC 59.894 66.667 0.00 0.00 0.00 4.79
119 120 3.845259 GCTACCACATCCCGCCGA 61.845 66.667 0.00 0.00 0.00 5.54
120 121 4.910585 GGCTACCACATCCCGCCG 62.911 72.222 0.00 0.00 0.00 6.46
121 122 3.757248 CTGGCTACCACATCCCGCC 62.757 68.421 0.00 0.00 41.06 6.13
122 123 2.044806 ATCTGGCTACCACATCCCGC 62.045 60.000 0.00 0.00 0.00 6.13
123 124 1.338107 TATCTGGCTACCACATCCCG 58.662 55.000 0.00 0.00 0.00 5.14
124 125 3.177228 AGATATCTGGCTACCACATCCC 58.823 50.000 3.89 0.00 0.00 3.85
125 126 4.404073 CCTAGATATCTGGCTACCACATCC 59.596 50.000 15.79 0.00 0.00 3.51
126 127 5.020132 ACCTAGATATCTGGCTACCACATC 58.980 45.833 15.79 0.00 0.00 3.06
127 128 5.017093 ACCTAGATATCTGGCTACCACAT 57.983 43.478 15.79 0.00 0.00 3.21
128 129 4.408276 GACCTAGATATCTGGCTACCACA 58.592 47.826 15.79 0.00 0.00 4.17
129 130 3.764972 GGACCTAGATATCTGGCTACCAC 59.235 52.174 15.79 0.89 0.00 4.16
130 131 3.663136 AGGACCTAGATATCTGGCTACCA 59.337 47.826 15.79 0.00 0.00 3.25
131 132 4.020543 CAGGACCTAGATATCTGGCTACC 58.979 52.174 15.79 13.92 0.00 3.18
132 133 4.668636 ACAGGACCTAGATATCTGGCTAC 58.331 47.826 15.79 0.21 0.00 3.58
133 134 5.340891 AACAGGACCTAGATATCTGGCTA 57.659 43.478 15.79 0.00 0.00 3.93
134 135 3.913370 ACAGGACCTAGATATCTGGCT 57.087 47.619 15.79 0.00 0.00 4.75
135 136 4.636249 CAAACAGGACCTAGATATCTGGC 58.364 47.826 15.79 1.15 0.00 4.85
136 137 4.101585 TGCAAACAGGACCTAGATATCTGG 59.898 45.833 15.79 12.34 0.00 3.86
137 138 5.282055 TGCAAACAGGACCTAGATATCTG 57.718 43.478 15.79 1.92 0.00 2.90
138 139 5.957771 TTGCAAACAGGACCTAGATATCT 57.042 39.130 10.73 10.73 0.00 1.98
163 164 0.951040 CAGTCCAACTCGGCAACTCC 60.951 60.000 0.00 0.00 33.14 3.85
164 165 0.951040 CCAGTCCAACTCGGCAACTC 60.951 60.000 0.00 0.00 33.14 3.01
165 166 1.071471 CCAGTCCAACTCGGCAACT 59.929 57.895 0.00 0.00 33.14 3.16
166 167 2.617274 GCCAGTCCAACTCGGCAAC 61.617 63.158 12.61 0.00 40.07 4.17
167 168 2.281484 GCCAGTCCAACTCGGCAA 60.281 61.111 12.61 0.00 40.07 4.52
168 169 3.535629 CTGCCAGTCCAACTCGGCA 62.536 63.158 16.76 16.76 44.29 5.69
169 170 2.743928 CTGCCAGTCCAACTCGGC 60.744 66.667 11.31 11.31 40.45 5.54
170 171 2.046892 CCTGCCAGTCCAACTCGG 60.047 66.667 0.00 0.00 0.00 4.63
171 172 1.079543 CTCCTGCCAGTCCAACTCG 60.080 63.158 0.00 0.00 0.00 4.18
172 173 0.687354 TTCTCCTGCCAGTCCAACTC 59.313 55.000 0.00 0.00 0.00 3.01
173 174 1.004044 CATTCTCCTGCCAGTCCAACT 59.996 52.381 0.00 0.00 0.00 3.16
174 175 1.003580 TCATTCTCCTGCCAGTCCAAC 59.996 52.381 0.00 0.00 0.00 3.77
175 176 1.361204 TCATTCTCCTGCCAGTCCAA 58.639 50.000 0.00 0.00 0.00 3.53
176 177 1.588239 ATCATTCTCCTGCCAGTCCA 58.412 50.000 0.00 0.00 0.00 4.02
177 178 2.092753 TGAATCATTCTCCTGCCAGTCC 60.093 50.000 0.00 0.00 0.00 3.85
178 179 3.204526 CTGAATCATTCTCCTGCCAGTC 58.795 50.000 0.00 0.00 0.00 3.51
179 180 2.092538 CCTGAATCATTCTCCTGCCAGT 60.093 50.000 0.00 0.00 0.00 4.00
180 181 2.172082 TCCTGAATCATTCTCCTGCCAG 59.828 50.000 0.00 0.00 0.00 4.85
181 182 2.172082 CTCCTGAATCATTCTCCTGCCA 59.828 50.000 0.00 0.00 0.00 4.92
182 183 2.848691 CTCCTGAATCATTCTCCTGCC 58.151 52.381 0.00 0.00 0.00 4.85
183 184 2.220313 GCTCCTGAATCATTCTCCTGC 58.780 52.381 0.00 0.00 0.00 4.85
184 185 2.806019 CGGCTCCTGAATCATTCTCCTG 60.806 54.545 0.00 0.00 0.00 3.86
185 186 1.415659 CGGCTCCTGAATCATTCTCCT 59.584 52.381 0.00 0.00 0.00 3.69
186 187 1.542108 CCGGCTCCTGAATCATTCTCC 60.542 57.143 0.00 0.00 0.00 3.71
187 188 1.414181 TCCGGCTCCTGAATCATTCTC 59.586 52.381 0.00 0.00 0.00 2.87
188 189 1.415659 CTCCGGCTCCTGAATCATTCT 59.584 52.381 0.00 0.00 0.00 2.40
189 190 1.542108 CCTCCGGCTCCTGAATCATTC 60.542 57.143 0.00 0.00 0.00 2.67
190 191 0.471617 CCTCCGGCTCCTGAATCATT 59.528 55.000 0.00 0.00 0.00 2.57
191 192 0.692419 ACCTCCGGCTCCTGAATCAT 60.692 55.000 0.00 0.00 0.00 2.45
192 193 1.306141 ACCTCCGGCTCCTGAATCA 60.306 57.895 0.00 0.00 0.00 2.57
193 194 1.144936 CACCTCCGGCTCCTGAATC 59.855 63.158 0.00 0.00 0.00 2.52
194 195 2.370445 CCACCTCCGGCTCCTGAAT 61.370 63.158 0.00 0.00 0.00 2.57
195 196 3.003173 CCACCTCCGGCTCCTGAA 61.003 66.667 0.00 0.00 0.00 3.02
198 199 4.787280 CTCCCACCTCCGGCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
199 200 4.779733 TCTCCCACCTCCGGCTCC 62.780 72.222 0.00 0.00 0.00 4.70
200 201 3.462678 GTCTCCCACCTCCGGCTC 61.463 72.222 0.00 0.00 0.00 4.70
201 202 4.316823 TGTCTCCCACCTCCGGCT 62.317 66.667 0.00 0.00 0.00 5.52
202 203 3.775654 CTGTCTCCCACCTCCGGC 61.776 72.222 0.00 0.00 0.00 6.13
203 204 3.077556 CCTGTCTCCCACCTCCGG 61.078 72.222 0.00 0.00 0.00 5.14
204 205 3.775654 GCCTGTCTCCCACCTCCG 61.776 72.222 0.00 0.00 0.00 4.63
205 206 3.403558 GGCCTGTCTCCCACCTCC 61.404 72.222 0.00 0.00 0.00 4.30
206 207 2.607750 TGGCCTGTCTCCCACCTC 60.608 66.667 3.32 0.00 0.00 3.85
207 208 2.608988 CTGGCCTGTCTCCCACCT 60.609 66.667 3.32 0.00 0.00 4.00
208 209 3.721706 CCTGGCCTGTCTCCCACC 61.722 72.222 3.32 0.00 0.00 4.61
209 210 3.721706 CCCTGGCCTGTCTCCCAC 61.722 72.222 3.32 0.00 0.00 4.61
211 212 4.741239 TCCCCTGGCCTGTCTCCC 62.741 72.222 3.32 0.00 0.00 4.30
212 213 2.367512 ATCCCCTGGCCTGTCTCC 60.368 66.667 3.32 0.00 0.00 3.71
213 214 1.690633 TCATCCCCTGGCCTGTCTC 60.691 63.158 3.32 0.00 0.00 3.36
214 215 1.692042 CTCATCCCCTGGCCTGTCT 60.692 63.158 3.32 0.00 0.00 3.41
215 216 2.750657 CCTCATCCCCTGGCCTGTC 61.751 68.421 3.32 0.00 0.00 3.51
216 217 2.693864 CCTCATCCCCTGGCCTGT 60.694 66.667 3.32 0.00 0.00 4.00
217 218 3.496160 CCCTCATCCCCTGGCCTG 61.496 72.222 3.32 2.54 0.00 4.85
218 219 2.998668 GATCCCTCATCCCCTGGCCT 62.999 65.000 3.32 0.00 0.00 5.19
219 220 2.451294 ATCCCTCATCCCCTGGCC 60.451 66.667 0.00 0.00 0.00 5.36
220 221 1.064824 AAGATCCCTCATCCCCTGGC 61.065 60.000 0.00 0.00 30.71 4.85
221 222 1.527457 AAAGATCCCTCATCCCCTGG 58.473 55.000 0.00 0.00 30.71 4.45
222 223 2.486191 CGAAAAGATCCCTCATCCCCTG 60.486 54.545 0.00 0.00 30.71 4.45
223 224 1.771255 CGAAAAGATCCCTCATCCCCT 59.229 52.381 0.00 0.00 30.71 4.79
224 225 1.815795 GCGAAAAGATCCCTCATCCCC 60.816 57.143 0.00 0.00 30.71 4.81
225 226 1.134098 TGCGAAAAGATCCCTCATCCC 60.134 52.381 0.00 0.00 30.71 3.85
226 227 2.332063 TGCGAAAAGATCCCTCATCC 57.668 50.000 0.00 0.00 30.71 3.51
227 228 4.553547 CGATTTGCGAAAAGATCCCTCATC 60.554 45.833 0.00 0.00 44.57 2.92
228 229 3.313526 CGATTTGCGAAAAGATCCCTCAT 59.686 43.478 0.00 0.00 44.57 2.90
229 230 2.677836 CGATTTGCGAAAAGATCCCTCA 59.322 45.455 0.00 0.00 44.57 3.86
230 231 2.539750 GCGATTTGCGAAAAGATCCCTC 60.540 50.000 0.00 0.00 44.57 4.30
231 232 1.401905 GCGATTTGCGAAAAGATCCCT 59.598 47.619 0.00 0.00 44.57 4.20
232 233 1.827578 GCGATTTGCGAAAAGATCCC 58.172 50.000 0.00 0.00 44.57 3.85
243 244 1.003116 CAGCTCACCTATGCGATTTGC 60.003 52.381 0.00 0.00 46.70 3.68
244 245 1.600957 CCAGCTCACCTATGCGATTTG 59.399 52.381 0.00 0.00 0.00 2.32
245 246 1.475751 CCCAGCTCACCTATGCGATTT 60.476 52.381 0.00 0.00 0.00 2.17
246 247 0.107456 CCCAGCTCACCTATGCGATT 59.893 55.000 0.00 0.00 0.00 3.34
247 248 1.050988 ACCCAGCTCACCTATGCGAT 61.051 55.000 0.00 0.00 0.00 4.58
248 249 1.264749 AACCCAGCTCACCTATGCGA 61.265 55.000 0.00 0.00 0.00 5.10
249 250 1.091771 CAACCCAGCTCACCTATGCG 61.092 60.000 0.00 0.00 0.00 4.73
250 251 0.749454 CCAACCCAGCTCACCTATGC 60.749 60.000 0.00 0.00 0.00 3.14
251 252 0.911769 TCCAACCCAGCTCACCTATG 59.088 55.000 0.00 0.00 0.00 2.23
252 253 1.207791 CTCCAACCCAGCTCACCTAT 58.792 55.000 0.00 0.00 0.00 2.57
253 254 0.909610 CCTCCAACCCAGCTCACCTA 60.910 60.000 0.00 0.00 0.00 3.08
254 255 2.227036 CCTCCAACCCAGCTCACCT 61.227 63.158 0.00 0.00 0.00 4.00
255 256 2.352805 CCTCCAACCCAGCTCACC 59.647 66.667 0.00 0.00 0.00 4.02
256 257 2.360475 GCCTCCAACCCAGCTCAC 60.360 66.667 0.00 0.00 0.00 3.51
257 258 4.020617 CGCCTCCAACCCAGCTCA 62.021 66.667 0.00 0.00 0.00 4.26
258 259 4.785453 CCGCCTCCAACCCAGCTC 62.785 72.222 0.00 0.00 0.00 4.09
265 266 4.699522 AAGACGCCCGCCTCCAAC 62.700 66.667 0.00 0.00 0.00 3.77
266 267 2.969300 AAAAAGACGCCCGCCTCCAA 62.969 55.000 0.00 0.00 0.00 3.53
267 268 3.485346 AAAAAGACGCCCGCCTCCA 62.485 57.895 0.00 0.00 0.00 3.86
268 269 2.671963 AAAAAGACGCCCGCCTCC 60.672 61.111 0.00 0.00 0.00 4.30
269 270 2.561373 CAAAAAGACGCCCGCCTC 59.439 61.111 0.00 0.00 0.00 4.70
270 271 3.670377 GCAAAAAGACGCCCGCCT 61.670 61.111 0.00 0.00 0.00 5.52
271 272 3.492311 TTGCAAAAAGACGCCCGCC 62.492 57.895 0.00 0.00 0.00 6.13
272 273 2.016165 CTTGCAAAAAGACGCCCGC 61.016 57.895 0.00 0.00 0.00 6.13
273 274 0.030101 TTCTTGCAAAAAGACGCCCG 59.970 50.000 0.00 0.00 0.00 6.13
274 275 2.438868 ATTCTTGCAAAAAGACGCCC 57.561 45.000 0.00 0.00 0.00 6.13
275 276 3.380142 TCAATTCTTGCAAAAAGACGCC 58.620 40.909 0.00 0.00 0.00 5.68
276 277 3.121227 GCTCAATTCTTGCAAAAAGACGC 60.121 43.478 0.00 0.00 0.00 5.19
277 278 3.426525 GGCTCAATTCTTGCAAAAAGACG 59.573 43.478 0.00 0.00 0.00 4.18
278 279 4.370917 TGGCTCAATTCTTGCAAAAAGAC 58.629 39.130 0.00 0.00 0.00 3.01
279 280 4.669206 TGGCTCAATTCTTGCAAAAAGA 57.331 36.364 0.00 0.00 0.00 2.52
280 281 4.571580 TGTTGGCTCAATTCTTGCAAAAAG 59.428 37.500 0.00 0.00 0.00 2.27
281 282 4.511527 TGTTGGCTCAATTCTTGCAAAAA 58.488 34.783 0.00 0.00 0.00 1.94
282 283 4.134379 TGTTGGCTCAATTCTTGCAAAA 57.866 36.364 0.00 0.00 0.00 2.44
283 284 3.815856 TGTTGGCTCAATTCTTGCAAA 57.184 38.095 0.00 0.00 0.00 3.68
284 285 3.815856 TTGTTGGCTCAATTCTTGCAA 57.184 38.095 0.00 0.00 0.00 4.08
285 286 3.132646 AGTTTGTTGGCTCAATTCTTGCA 59.867 39.130 0.00 0.00 0.00 4.08
286 287 3.721035 AGTTTGTTGGCTCAATTCTTGC 58.279 40.909 0.00 0.00 0.00 4.01
287 288 5.830912 TGTAGTTTGTTGGCTCAATTCTTG 58.169 37.500 0.00 0.00 0.00 3.02
288 289 6.449698 CATGTAGTTTGTTGGCTCAATTCTT 58.550 36.000 0.00 0.00 0.00 2.52
289 290 5.565439 GCATGTAGTTTGTTGGCTCAATTCT 60.565 40.000 0.00 0.00 0.00 2.40
290 291 4.622740 GCATGTAGTTTGTTGGCTCAATTC 59.377 41.667 0.00 0.00 0.00 2.17
291 292 4.559153 GCATGTAGTTTGTTGGCTCAATT 58.441 39.130 0.00 0.00 0.00 2.32
292 293 3.366273 CGCATGTAGTTTGTTGGCTCAAT 60.366 43.478 0.00 0.00 0.00 2.57
293 294 2.031245 CGCATGTAGTTTGTTGGCTCAA 60.031 45.455 0.00 0.00 0.00 3.02
294 295 1.535028 CGCATGTAGTTTGTTGGCTCA 59.465 47.619 0.00 0.00 0.00 4.26
295 296 1.729149 GCGCATGTAGTTTGTTGGCTC 60.729 52.381 0.30 0.00 0.00 4.70
296 297 0.240945 GCGCATGTAGTTTGTTGGCT 59.759 50.000 0.30 0.00 0.00 4.75
297 298 0.039617 TGCGCATGTAGTTTGTTGGC 60.040 50.000 5.66 0.00 0.00 4.52
298 299 1.401409 CCTGCGCATGTAGTTTGTTGG 60.401 52.381 12.24 0.00 0.00 3.77
299 300 1.535028 TCCTGCGCATGTAGTTTGTTG 59.465 47.619 12.24 0.00 0.00 3.33
300 301 1.890876 TCCTGCGCATGTAGTTTGTT 58.109 45.000 12.24 0.00 0.00 2.83
301 302 2.113860 ATCCTGCGCATGTAGTTTGT 57.886 45.000 12.24 0.00 0.00 2.83
302 303 3.119884 TCAAATCCTGCGCATGTAGTTTG 60.120 43.478 12.24 19.09 30.32 2.93
303 304 3.081061 TCAAATCCTGCGCATGTAGTTT 58.919 40.909 12.24 8.86 0.00 2.66
304 305 2.710377 TCAAATCCTGCGCATGTAGTT 58.290 42.857 12.24 1.64 0.00 2.24
305 306 2.401583 TCAAATCCTGCGCATGTAGT 57.598 45.000 12.24 0.00 0.00 2.73
306 307 3.605461 CGAATCAAATCCTGCGCATGTAG 60.605 47.826 12.24 0.00 0.00 2.74
307 308 2.287644 CGAATCAAATCCTGCGCATGTA 59.712 45.455 12.24 0.00 0.00 2.29
308 309 1.064505 CGAATCAAATCCTGCGCATGT 59.935 47.619 12.24 0.00 0.00 3.21
309 310 1.598676 CCGAATCAAATCCTGCGCATG 60.599 52.381 12.24 8.91 0.00 4.06
310 311 0.664761 CCGAATCAAATCCTGCGCAT 59.335 50.000 12.24 0.00 0.00 4.73
311 312 0.392327 TCCGAATCAAATCCTGCGCA 60.392 50.000 10.98 10.98 0.00 6.09
312 313 0.947244 ATCCGAATCAAATCCTGCGC 59.053 50.000 0.00 0.00 0.00 6.09
313 314 1.265095 CCATCCGAATCAAATCCTGCG 59.735 52.381 0.00 0.00 0.00 5.18
314 315 2.575532 TCCATCCGAATCAAATCCTGC 58.424 47.619 0.00 0.00 0.00 4.85
315 316 3.504906 CCATCCATCCGAATCAAATCCTG 59.495 47.826 0.00 0.00 0.00 3.86
316 317 3.139025 ACCATCCATCCGAATCAAATCCT 59.861 43.478 0.00 0.00 0.00 3.24
317 318 3.490348 ACCATCCATCCGAATCAAATCC 58.510 45.455 0.00 0.00 0.00 3.01
318 319 4.154918 GCTACCATCCATCCGAATCAAATC 59.845 45.833 0.00 0.00 0.00 2.17
319 320 4.074970 GCTACCATCCATCCGAATCAAAT 58.925 43.478 0.00 0.00 0.00 2.32
320 321 3.476552 GCTACCATCCATCCGAATCAAA 58.523 45.455 0.00 0.00 0.00 2.69
321 322 2.547855 CGCTACCATCCATCCGAATCAA 60.548 50.000 0.00 0.00 0.00 2.57
322 323 1.000843 CGCTACCATCCATCCGAATCA 59.999 52.381 0.00 0.00 0.00 2.57
323 324 1.272490 TCGCTACCATCCATCCGAATC 59.728 52.381 0.00 0.00 0.00 2.52
324 325 1.338107 TCGCTACCATCCATCCGAAT 58.662 50.000 0.00 0.00 0.00 3.34
325 326 1.068588 CTTCGCTACCATCCATCCGAA 59.931 52.381 0.00 0.00 34.17 4.30
326 327 0.673985 CTTCGCTACCATCCATCCGA 59.326 55.000 0.00 0.00 0.00 4.55
327 328 0.319900 CCTTCGCTACCATCCATCCG 60.320 60.000 0.00 0.00 0.00 4.18
328 329 0.035458 CCCTTCGCTACCATCCATCC 59.965 60.000 0.00 0.00 0.00 3.51
329 330 1.048601 TCCCTTCGCTACCATCCATC 58.951 55.000 0.00 0.00 0.00 3.51
330 331 1.349026 CATCCCTTCGCTACCATCCAT 59.651 52.381 0.00 0.00 0.00 3.41
331 332 0.758734 CATCCCTTCGCTACCATCCA 59.241 55.000 0.00 0.00 0.00 3.41
332 333 0.603975 GCATCCCTTCGCTACCATCC 60.604 60.000 0.00 0.00 0.00 3.51
333 334 0.106708 TGCATCCCTTCGCTACCATC 59.893 55.000 0.00 0.00 0.00 3.51
334 335 0.107456 CTGCATCCCTTCGCTACCAT 59.893 55.000 0.00 0.00 0.00 3.55
335 336 1.522092 CTGCATCCCTTCGCTACCA 59.478 57.895 0.00 0.00 0.00 3.25
336 337 1.227674 CCTGCATCCCTTCGCTACC 60.228 63.158 0.00 0.00 0.00 3.18
337 338 1.227674 CCCTGCATCCCTTCGCTAC 60.228 63.158 0.00 0.00 0.00 3.58
338 339 2.443394 CCCCTGCATCCCTTCGCTA 61.443 63.158 0.00 0.00 0.00 4.26
339 340 3.801997 CCCCTGCATCCCTTCGCT 61.802 66.667 0.00 0.00 0.00 4.93
340 341 4.115199 ACCCCTGCATCCCTTCGC 62.115 66.667 0.00 0.00 0.00 4.70
341 342 2.124570 CACCCCTGCATCCCTTCG 60.125 66.667 0.00 0.00 0.00 3.79
342 343 2.440980 GCACCCCTGCATCCCTTC 60.441 66.667 0.00 0.00 43.62 3.46
350 351 3.869473 TACGTTCGTGCACCCCTGC 62.869 63.158 12.15 0.00 44.52 4.85
351 352 1.736645 CTACGTTCGTGCACCCCTG 60.737 63.158 12.15 1.55 0.00 4.45
352 353 2.151049 GACTACGTTCGTGCACCCCT 62.151 60.000 12.15 0.00 0.00 4.79
353 354 1.735559 GACTACGTTCGTGCACCCC 60.736 63.158 12.15 0.00 0.00 4.95
354 355 1.007038 TGACTACGTTCGTGCACCC 60.007 57.895 12.15 0.00 0.00 4.61
355 356 0.039798 TCTGACTACGTTCGTGCACC 60.040 55.000 12.15 0.00 0.00 5.01
356 357 1.978542 ATCTGACTACGTTCGTGCAC 58.021 50.000 6.82 6.82 0.00 4.57
357 358 2.030628 TGAATCTGACTACGTTCGTGCA 60.031 45.455 8.14 3.28 0.00 4.57
358 359 2.592194 TGAATCTGACTACGTTCGTGC 58.408 47.619 8.14 0.00 0.00 5.34
359 360 4.970611 CCTATGAATCTGACTACGTTCGTG 59.029 45.833 8.14 1.39 0.00 4.35
360 361 4.880120 TCCTATGAATCTGACTACGTTCGT 59.120 41.667 0.00 2.91 0.00 3.85
361 362 5.419760 TCCTATGAATCTGACTACGTTCG 57.580 43.478 0.00 0.00 0.00 3.95
362 363 7.016466 CGTATCCTATGAATCTGACTACGTTC 58.984 42.308 0.00 0.00 0.00 3.95
363 364 6.709397 TCGTATCCTATGAATCTGACTACGTT 59.291 38.462 0.00 0.00 33.25 3.99
364 365 6.147492 GTCGTATCCTATGAATCTGACTACGT 59.853 42.308 0.00 0.00 33.25 3.57
365 366 6.535811 GTCGTATCCTATGAATCTGACTACG 58.464 44.000 0.00 0.00 0.00 3.51
366 367 6.535811 CGTCGTATCCTATGAATCTGACTAC 58.464 44.000 0.00 0.00 0.00 2.73
367 368 5.121925 GCGTCGTATCCTATGAATCTGACTA 59.878 44.000 0.00 0.00 0.00 2.59
368 369 4.083217 GCGTCGTATCCTATGAATCTGACT 60.083 45.833 0.00 0.00 0.00 3.41
369 370 4.159857 GCGTCGTATCCTATGAATCTGAC 58.840 47.826 0.00 0.00 0.00 3.51
370 371 3.190744 GGCGTCGTATCCTATGAATCTGA 59.809 47.826 0.00 0.00 0.00 3.27
371 372 3.502920 GGCGTCGTATCCTATGAATCTG 58.497 50.000 0.00 0.00 0.00 2.90
372 373 2.492484 GGGCGTCGTATCCTATGAATCT 59.508 50.000 0.00 0.00 0.00 2.40
373 374 2.230508 TGGGCGTCGTATCCTATGAATC 59.769 50.000 0.00 0.00 0.00 2.52
374 375 2.029290 GTGGGCGTCGTATCCTATGAAT 60.029 50.000 0.00 0.00 0.00 2.57
375 376 1.338973 GTGGGCGTCGTATCCTATGAA 59.661 52.381 0.00 0.00 0.00 2.57
376 377 0.956633 GTGGGCGTCGTATCCTATGA 59.043 55.000 0.00 0.00 0.00 2.15
377 378 0.959553 AGTGGGCGTCGTATCCTATG 59.040 55.000 0.00 0.00 0.00 2.23
378 379 1.700955 AAGTGGGCGTCGTATCCTAT 58.299 50.000 0.00 0.00 0.00 2.57
379 380 1.477553 AAAGTGGGCGTCGTATCCTA 58.522 50.000 0.00 0.00 0.00 2.94
380 381 1.477553 TAAAGTGGGCGTCGTATCCT 58.522 50.000 0.00 0.00 0.00 3.24
381 382 2.298411 TTAAAGTGGGCGTCGTATCC 57.702 50.000 0.00 0.00 0.00 2.59
382 383 3.256558 ACTTTAAAGTGGGCGTCGTATC 58.743 45.455 19.94 0.00 37.98 2.24
383 384 3.323751 ACTTTAAAGTGGGCGTCGTAT 57.676 42.857 19.94 0.00 37.98 3.06
384 385 2.818130 ACTTTAAAGTGGGCGTCGTA 57.182 45.000 19.94 0.00 37.98 3.43
385 386 1.957668 AACTTTAAAGTGGGCGTCGT 58.042 45.000 21.22 0.36 39.66 4.34
386 387 4.471157 TTTAACTTTAAAGTGGGCGTCG 57.529 40.909 21.22 0.00 39.66 5.12
387 388 6.698329 ACAATTTTAACTTTAAAGTGGGCGTC 59.302 34.615 21.22 0.00 39.66 5.19
388 389 6.575267 ACAATTTTAACTTTAAAGTGGGCGT 58.425 32.000 21.22 8.06 39.66 5.68
389 390 7.222999 TGAACAATTTTAACTTTAAAGTGGGCG 59.777 33.333 21.22 9.11 39.66 6.13
390 391 8.426881 TGAACAATTTTAACTTTAAAGTGGGC 57.573 30.769 21.22 4.85 39.66 5.36
488 490 4.103103 TCACCGCTCTCGCTGTCG 62.103 66.667 0.00 0.00 30.75 4.35
489 491 2.202544 CTCACCGCTCTCGCTGTC 60.203 66.667 0.00 0.00 30.75 3.51
499 501 2.510238 CAGGTAGCAGCTCACCGC 60.510 66.667 0.00 0.00 39.94 5.68
500 502 2.510238 GCAGGTAGCAGCTCACCG 60.510 66.667 0.00 3.83 44.79 4.94
515 865 2.511373 GCCACATCCATCGTCGCA 60.511 61.111 0.00 0.00 0.00 5.10
520 870 2.203252 CCCCAGCCACATCCATCG 60.203 66.667 0.00 0.00 0.00 3.84
670 3872 6.094991 TGTATTCCATATCCTATTGGGTCCA 58.905 40.000 0.00 0.00 36.25 4.02
809 4015 1.086067 ACATCGTCAGCGCCAAGATG 61.086 55.000 22.84 22.84 42.95 2.90
810 4016 0.807667 GACATCGTCAGCGCCAAGAT 60.808 55.000 2.29 1.05 38.14 2.40
811 4017 1.446099 GACATCGTCAGCGCCAAGA 60.446 57.895 2.29 0.00 38.14 3.02
812 4018 2.792290 CGACATCGTCAGCGCCAAG 61.792 63.158 2.29 0.00 38.14 3.61
903 4113 3.034878 CCGATCATCGCCGTCTCT 58.965 61.111 0.00 0.00 38.82 3.10
923 4133 4.218478 GCATACGAACGCGCCCAC 62.218 66.667 5.73 0.00 42.48 4.61
953 4163 2.446848 CCCCTGCCGAGGATGTGAT 61.447 63.158 0.00 0.00 42.93 3.06
1157 4367 2.280708 GCGTACGTATGTTTAGCACTGG 59.719 50.000 17.90 0.00 0.00 4.00
1185 4410 1.151450 CCCTTCACCAGCCACTGTT 59.849 57.895 0.00 0.00 0.00 3.16
1241 4466 2.433318 GTCTTCAAGGCGCTCGCT 60.433 61.111 7.64 0.00 41.60 4.93
1456 4681 1.413382 CGAAGATAGGCTGACATCGC 58.587 55.000 0.00 0.00 0.00 4.58
1474 4699 1.091771 ATTTGAGAGCCACGGATGCG 61.092 55.000 4.58 4.58 0.00 4.73
1691 4916 3.723835 GCTTTACGAAATCGACGTTGCAT 60.724 43.478 10.16 0.00 43.62 3.96
1709 4934 2.648059 CTTCATTCCTCCATCGGCTTT 58.352 47.619 0.00 0.00 0.00 3.51
1717 4942 1.923395 ACCCGCCTTCATTCCTCCA 60.923 57.895 0.00 0.00 0.00 3.86
1731 4964 0.391661 CCAGGTCAGTTGATCACCCG 60.392 60.000 0.00 0.00 0.00 5.28
1732 4965 0.693049 ACCAGGTCAGTTGATCACCC 59.307 55.000 0.00 0.00 0.00 4.61
1735 4968 1.728323 TGGACCAGGTCAGTTGATCA 58.272 50.000 21.75 5.17 33.68 2.92
1737 4970 1.283029 CCATGGACCAGGTCAGTTGAT 59.717 52.381 21.75 2.09 33.68 2.57
1738 4971 0.692476 CCATGGACCAGGTCAGTTGA 59.308 55.000 21.75 0.00 33.68 3.18
1739 4972 0.401738 ACCATGGACCAGGTCAGTTG 59.598 55.000 21.47 13.99 33.68 3.16
1998 5233 3.480505 TGGTGCATCATGGTATCTGAG 57.519 47.619 0.00 0.00 0.00 3.35
2008 5243 2.103601 TCACAGATCGATGGTGCATCAT 59.896 45.455 13.54 13.54 40.54 2.45
2009 5244 1.481772 TCACAGATCGATGGTGCATCA 59.518 47.619 17.70 0.00 40.54 3.07
2010 5245 2.133553 CTCACAGATCGATGGTGCATC 58.866 52.381 17.70 0.00 37.50 3.91
2011 5246 1.758862 TCTCACAGATCGATGGTGCAT 59.241 47.619 17.70 0.00 32.69 3.96
2012 5247 1.134995 GTCTCACAGATCGATGGTGCA 60.135 52.381 17.70 7.64 32.69 4.57
2013 5248 1.134995 TGTCTCACAGATCGATGGTGC 60.135 52.381 17.70 8.24 32.69 5.01
2014 5249 2.534298 GTGTCTCACAGATCGATGGTG 58.466 52.381 16.81 16.81 34.08 4.17
2015 5250 1.133216 CGTGTCTCACAGATCGATGGT 59.867 52.381 0.54 0.00 33.40 3.55
2016 5251 1.401905 TCGTGTCTCACAGATCGATGG 59.598 52.381 0.54 0.00 33.40 3.51
2028 5263 3.181505 ACATCGATCTCTGTTCGTGTCTC 60.182 47.826 0.00 0.00 37.82 3.36
2029 5264 2.750166 ACATCGATCTCTGTTCGTGTCT 59.250 45.455 0.00 0.00 37.82 3.41
2045 5292 2.451132 CTCTACGTAAGCACCACATCG 58.549 52.381 0.00 0.00 45.62 3.84
2117 5364 1.521681 GCTGTCATCGTGGGCTACC 60.522 63.158 0.00 0.00 37.24 3.18
2142 5389 7.992180 AACACTTTGCTCTCTATTTTTGTTG 57.008 32.000 0.00 0.00 0.00 3.33
2198 5445 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2203 5450 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2206 5453 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2208 5455 1.535028 CTTGTGTGTGTGTGTGTGTGT 59.465 47.619 0.00 0.00 0.00 3.72
2210 5457 1.804151 GTCTTGTGTGTGTGTGTGTGT 59.196 47.619 0.00 0.00 0.00 3.72
2212 5459 1.804151 GTGTCTTGTGTGTGTGTGTGT 59.196 47.619 0.00 0.00 0.00 3.72
2213 5460 1.803555 TGTGTCTTGTGTGTGTGTGTG 59.196 47.619 0.00 0.00 0.00 3.82
2214 5461 2.177394 TGTGTCTTGTGTGTGTGTGT 57.823 45.000 0.00 0.00 0.00 3.72
2215 5462 2.225255 TGTTGTGTCTTGTGTGTGTGTG 59.775 45.455 0.00 0.00 0.00 3.82
2216 5463 2.499197 TGTTGTGTCTTGTGTGTGTGT 58.501 42.857 0.00 0.00 0.00 3.72
2218 5465 3.342719 TCATGTTGTGTCTTGTGTGTGT 58.657 40.909 0.00 0.00 0.00 3.72
2219 5466 4.354071 TTCATGTTGTGTCTTGTGTGTG 57.646 40.909 0.00 0.00 0.00 3.82
2220 5467 5.342433 CAATTCATGTTGTGTCTTGTGTGT 58.658 37.500 0.00 0.00 0.00 3.72
2221 5468 4.741185 CCAATTCATGTTGTGTCTTGTGTG 59.259 41.667 0.00 0.00 0.00 3.82
2222 5469 4.402155 ACCAATTCATGTTGTGTCTTGTGT 59.598 37.500 0.00 0.00 0.00 3.72
2223 5470 4.935702 ACCAATTCATGTTGTGTCTTGTG 58.064 39.130 0.00 0.00 0.00 3.33
2224 5471 5.350633 CAACCAATTCATGTTGTGTCTTGT 58.649 37.500 0.00 0.00 37.62 3.16
2225 5472 4.746115 CCAACCAATTCATGTTGTGTCTTG 59.254 41.667 9.79 0.00 40.12 3.02
2226 5473 4.648762 TCCAACCAATTCATGTTGTGTCTT 59.351 37.500 9.79 0.00 40.12 3.01
2227 5474 4.214310 TCCAACCAATTCATGTTGTGTCT 58.786 39.130 9.79 0.00 40.12 3.41
2228 5475 4.582701 TCCAACCAATTCATGTTGTGTC 57.417 40.909 9.79 0.00 40.12 3.67
2233 5480 6.496565 TCCTGTTAATCCAACCAATTCATGTT 59.503 34.615 0.00 0.00 36.20 2.71
2298 5632 3.963428 AATTCAGGAGAGTACGCAACT 57.037 42.857 0.00 0.00 42.80 3.16
2335 5669 4.218635 TGTGTTTCTCGAGCTAACTGAGAT 59.781 41.667 22.39 0.00 38.46 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.