Multiple sequence alignment - TraesCS5D01G432800
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BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5D01G432800
chr5D
100.000
3983
0
0
1
3983
488852584
488856566
0.000000e+00
7356.0
1
TraesCS5D01G432800
chr5A
93.443
2379
97
27
1579
3914
609863896
609866258
0.000000e+00
3474.0
2
TraesCS5D01G432800
chr5A
94.118
374
7
4
690
1058
609862574
609862937
4.500000e-154
555.0
3
TraesCS5D01G432800
chr5A
89.160
369
16
5
1156
1513
609863391
609863746
4.730000e-119
438.0
4
TraesCS5D01G432800
chr5A
89.437
284
20
7
304
578
609862245
609862527
2.280000e-92
350.0
5
TraesCS5D01G432800
chr5A
82.410
307
42
7
170
474
332327321
332327617
1.420000e-64
257.0
6
TraesCS5D01G432800
chr5A
100.000
63
0
0
3920
3982
609866294
609866356
2.510000e-22
117.0
7
TraesCS5D01G432800
chr5B
87.959
1279
58
23
2729
3983
602244468
602245674
0.000000e+00
1421.0
8
TraesCS5D01G432800
chr5B
94.466
777
42
1
1579
2354
602242779
602243555
0.000000e+00
1195.0
9
TraesCS5D01G432800
chr5B
87.089
790
51
18
170
944
602240963
602241716
0.000000e+00
846.0
10
TraesCS5D01G432800
chr5B
91.031
446
22
5
1077
1513
602242192
602242628
1.590000e-163
586.0
11
TraesCS5D01G432800
chr5B
90.690
290
22
4
2430
2716
602243745
602244032
8.080000e-102
381.0
12
TraesCS5D01G432800
chr5B
97.037
135
4
0
38
172
602240750
602240884
1.110000e-55
228.0
13
TraesCS5D01G432800
chr5B
96.341
82
3
0
2339
2420
602243572
602243653
6.940000e-28
135.0
14
TraesCS5D01G432800
chr5B
98.611
72
1
0
1507
1578
602242667
602242738
1.160000e-25
128.0
15
TraesCS5D01G432800
chr3D
84.783
92
12
2
32
123
456542385
456542474
1.520000e-14
91.6
16
TraesCS5D01G432800
chr6B
87.671
73
8
1
61
132
703682016
703681944
2.550000e-12
84.2
17
TraesCS5D01G432800
chr2D
90.741
54
3
1
50
101
557265661
557265714
1.990000e-08
71.3
18
TraesCS5D01G432800
chr2A
87.037
54
5
1
50
101
697298399
697298452
4.300000e-05
60.2
19
TraesCS5D01G432800
chr1B
79.787
94
10
7
3
94
420560229
420560143
4.300000e-05
60.2
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5D01G432800
chr5D
488852584
488856566
3982
False
7356.0
7356
100.0000
1
3983
1
chr5D.!!$F1
3982
1
TraesCS5D01G432800
chr5A
609862245
609866356
4111
False
986.8
3474
93.2316
304
3982
5
chr5A.!!$F2
3678
2
TraesCS5D01G432800
chr5B
602240750
602245674
4924
False
615.0
1421
92.9030
38
3983
8
chr5B.!!$F1
3945
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
296
378
0.882474
GGGAGTCCGGATATCTGTCG
59.118
60.0
7.81
2.09
0.00
4.35
F
644
736
0.890683
CTGAGCCCACCAAAATGACC
59.109
55.0
0.00
0.00
0.00
4.02
F
1663
2540
0.242017
GTGTTGGCACTTCATCTGGC
59.758
55.0
0.00
0.00
42.13
4.85
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1246
2021
0.307760
CCGAAGCACAATTATCGGCC
59.692
55.000
0.00
0.0
46.97
6.13
R
1702
2579
1.006102
AGAGGCCTCAACAACGTCG
60.006
57.895
33.90
0.0
0.00
5.12
R
3591
5039
0.317020
AAACAACGCGCTTCAGCTTC
60.317
50.000
5.73
0.0
39.32
3.86
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
23
24
5.747951
AAAACCCGAAAACACGTATACAA
57.252
34.783
3.32
0.00
0.00
2.41
24
25
4.996062
AACCCGAAAACACGTATACAAG
57.004
40.909
3.32
0.00
0.00
3.16
25
26
4.255833
ACCCGAAAACACGTATACAAGA
57.744
40.909
3.32
0.00
0.00
3.02
26
27
4.824289
ACCCGAAAACACGTATACAAGAT
58.176
39.130
3.32
0.00
0.00
2.40
27
28
5.964758
ACCCGAAAACACGTATACAAGATA
58.035
37.500
3.32
0.00
0.00
1.98
28
29
6.038356
ACCCGAAAACACGTATACAAGATAG
58.962
40.000
3.32
0.00
0.00
2.08
29
30
6.127647
ACCCGAAAACACGTATACAAGATAGA
60.128
38.462
3.32
0.00
0.00
1.98
30
31
6.753279
CCCGAAAACACGTATACAAGATAGAA
59.247
38.462
3.32
0.00
0.00
2.10
31
32
7.276218
CCCGAAAACACGTATACAAGATAGAAA
59.724
37.037
3.32
0.00
0.00
2.52
32
33
8.649841
CCGAAAACACGTATACAAGATAGAAAA
58.350
33.333
3.32
0.00
0.00
2.29
176
258
3.702555
GTGACACGTGGCGCTGTC
61.703
66.667
27.45
17.80
37.90
3.51
206
288
1.173043
TTGTCATCAAATGCGGTCCC
58.827
50.000
0.00
0.00
0.00
4.46
243
325
3.582743
GTCCGGACGTCTGTTTTCT
57.417
52.632
20.85
0.00
0.00
2.52
252
334
1.656429
CGTCTGTTTTCTCGCAAACCG
60.656
52.381
0.00
0.00
36.03
4.44
271
353
1.264288
CGGAGACAAACAAAGTGGAGC
59.736
52.381
0.00
0.00
0.00
4.70
296
378
0.882474
GGGAGTCCGGATATCTGTCG
59.118
60.000
7.81
2.09
0.00
4.35
617
709
2.181521
GTTTGTGGGTCGGCGTTGA
61.182
57.895
6.85
0.00
0.00
3.18
627
719
3.365265
GGCGTTGAAGGTGCCCTG
61.365
66.667
0.00
0.00
43.06
4.45
644
736
0.890683
CTGAGCCCACCAAAATGACC
59.109
55.000
0.00
0.00
0.00
4.02
686
778
4.512944
CCTGAATGATTCGGACCACAATAG
59.487
45.833
15.33
0.00
38.34
1.73
687
779
3.876914
TGAATGATTCGGACCACAATAGC
59.123
43.478
0.18
0.00
0.00
2.97
688
780
3.558931
ATGATTCGGACCACAATAGCA
57.441
42.857
0.00
0.00
0.00
3.49
689
781
2.905075
TGATTCGGACCACAATAGCAG
58.095
47.619
0.00
0.00
0.00
4.24
703
795
1.204146
TAGCAGCCCGAGGAGAAAAT
58.796
50.000
0.00
0.00
0.00
1.82
1089
1529
1.991264
CTGATGATGGATCGATCGTGC
59.009
52.381
18.81
10.56
33.17
5.34
1226
2001
2.744202
CAGGAACATCTTTCGGGAAGTG
59.256
50.000
0.00
0.00
36.70
3.16
1227
2002
2.637872
AGGAACATCTTTCGGGAAGTGA
59.362
45.455
0.00
0.00
36.70
3.41
1246
2021
2.609002
TGATGCGAATTCAGGAACGATG
59.391
45.455
6.22
0.00
0.00
3.84
1247
2022
1.368641
TGCGAATTCAGGAACGATGG
58.631
50.000
6.22
0.00
0.00
3.51
1264
2039
1.013596
TGGCCGATAATTGTGCTTCG
58.986
50.000
0.00
0.00
0.00
3.79
1306
2081
3.260740
GAAGTTGAGATGGCTCTGAGTG
58.739
50.000
6.53
0.00
41.84
3.51
1379
2161
3.560636
TTAGCTCCTGTGCTTATTCCC
57.439
47.619
0.00
0.00
43.74
3.97
1410
2202
3.040147
ACAGGTGTGTAGATGGTTTCG
57.960
47.619
0.00
0.00
34.05
3.46
1555
2392
8.145767
AGCAATTTCTTCATTTCATTCAGTCAA
58.854
29.630
0.00
0.00
0.00
3.18
1663
2540
0.242017
GTGTTGGCACTTCATCTGGC
59.758
55.000
0.00
0.00
42.13
4.85
1678
2555
2.681421
GGCCCAGCCCCTTTCAAG
60.681
66.667
0.00
0.00
44.06
3.02
1702
2579
1.143620
CTCTGGAGGCAGCACTAGC
59.856
63.158
0.00
0.00
42.56
3.42
1911
2789
5.889853
TGCTCTTTCTGGCTTGAATGATAAT
59.110
36.000
8.76
0.00
32.32
1.28
1932
2810
9.763465
GATAATTTTTCAATCAAAATGCAGGTG
57.237
29.630
0.00
0.00
36.63
4.00
1970
2848
7.397192
ACCTATAATTCATATGGTGGATTTGGC
59.603
37.037
2.13
0.00
37.26
4.52
2040
2918
0.529119
GTATGGAGGTGGTTACGGCG
60.529
60.000
4.80
4.80
0.00
6.46
2051
2929
2.328856
TTACGGCGGTTCGTACGGA
61.329
57.895
16.52
2.84
43.99
4.69
2060
2938
2.050350
TTCGTACGGAGGCTCTGGG
61.050
63.158
26.25
15.11
0.00
4.45
2121
2999
0.843309
ATACGGTGGAATGGGCATGA
59.157
50.000
0.00
0.00
0.00
3.07
2122
3000
0.180171
TACGGTGGAATGGGCATGAG
59.820
55.000
0.00
0.00
0.00
2.90
2142
3020
3.108376
AGTCCTTACAATCAGGGTCCTC
58.892
50.000
0.00
0.00
31.50
3.71
2147
3025
2.698855
ACAATCAGGGTCCTCATTCG
57.301
50.000
0.00
0.00
0.00
3.34
2153
3031
0.322546
AGGGTCCTCATTCGTTTGGC
60.323
55.000
0.00
0.00
0.00
4.52
2485
3478
3.492102
ATCTATGGCGTGGCTATTGTT
57.508
42.857
0.00
0.00
31.02
2.83
2575
3572
3.941573
TGGGGACAACGTTCTATTTACC
58.058
45.455
0.00
0.00
37.44
2.85
2579
3576
4.564199
GGGACAACGTTCTATTTACCCTGT
60.564
45.833
0.00
0.00
32.93
4.00
2622
3619
3.700538
TGGGATTGTGAATTTCTCTGGG
58.299
45.455
0.00
0.00
0.00
4.45
2649
3646
3.282021
TGCATTCCTTATCAGCCAGAAC
58.718
45.455
0.00
0.00
0.00
3.01
2716
3713
1.808411
TGACGAGTGCCTTTCCATTC
58.192
50.000
0.00
0.00
0.00
2.67
2724
3727
3.826157
AGTGCCTTTCCATTCGATTCAAA
59.174
39.130
0.00
0.00
0.00
2.69
3131
4553
4.624604
GCGAGGAAACCAAGTAATCCCTAA
60.625
45.833
0.00
0.00
32.15
2.69
3276
4698
1.931635
TACCCAAAATGCCTTGTCCC
58.068
50.000
0.00
0.00
0.00
4.46
3282
4704
1.534729
AAATGCCTTGTCCCGAGAAC
58.465
50.000
0.00
0.00
0.00
3.01
3292
4714
0.761323
TCCCGAGAACTGGTCCACAA
60.761
55.000
0.00
0.00
0.00
3.33
3371
4793
1.134367
GCACAGGAGTATACTGACGCA
59.866
52.381
10.90
0.00
39.24
5.24
3387
4809
1.447140
GCACCTCGTGATAACGGCA
60.447
57.895
1.94
0.00
35.23
5.69
3418
4840
6.734104
ATTATCTGCTCTCACAGTTGTTTC
57.266
37.500
0.00
0.00
38.84
2.78
3460
4882
7.394923
TGATCATGATTAATCAGCAATATGCCA
59.605
33.333
21.97
12.37
46.52
4.92
3511
4934
0.793250
GTTCTTCGGCTCTTGCAGAC
59.207
55.000
0.00
0.00
42.66
3.51
3532
4955
2.159476
CGGTAGTGCTGCTACTCGTAAA
60.159
50.000
15.15
0.00
46.99
2.01
3573
5021
2.210116
GCGAAACTGGTCTGAAGTTGA
58.790
47.619
0.00
0.00
37.90
3.18
3574
5022
2.032808
GCGAAACTGGTCTGAAGTTGAC
60.033
50.000
0.00
0.00
37.90
3.18
3575
5023
3.194861
CGAAACTGGTCTGAAGTTGACA
58.805
45.455
0.00
0.00
37.90
3.58
3576
5024
3.809832
CGAAACTGGTCTGAAGTTGACAT
59.190
43.478
0.00
0.00
37.90
3.06
3577
5025
4.319046
CGAAACTGGTCTGAAGTTGACATG
60.319
45.833
0.00
0.00
37.90
3.21
3578
5026
2.498167
ACTGGTCTGAAGTTGACATGC
58.502
47.619
0.00
0.00
36.26
4.06
3579
5027
1.462283
CTGGTCTGAAGTTGACATGCG
59.538
52.381
0.00
0.00
36.26
4.73
3580
5028
0.166814
GGTCTGAAGTTGACATGCGC
59.833
55.000
0.00
0.00
36.26
6.09
3581
5029
0.166814
GTCTGAAGTTGACATGCGCC
59.833
55.000
4.18
0.00
34.80
6.53
3582
5030
0.955428
TCTGAAGTTGACATGCGCCC
60.955
55.000
4.18
0.00
0.00
6.13
3583
5031
0.957395
CTGAAGTTGACATGCGCCCT
60.957
55.000
4.18
0.00
0.00
5.19
3584
5032
1.236616
TGAAGTTGACATGCGCCCTG
61.237
55.000
4.18
5.05
0.00
4.45
3585
5033
0.955428
GAAGTTGACATGCGCCCTGA
60.955
55.000
4.18
0.00
0.00
3.86
3586
5034
0.957395
AAGTTGACATGCGCCCTGAG
60.957
55.000
4.18
0.00
0.00
3.35
3587
5035
2.747460
TTGACATGCGCCCTGAGC
60.747
61.111
4.18
1.64
38.52
4.26
3588
5036
3.258228
TTGACATGCGCCCTGAGCT
62.258
57.895
4.18
0.00
40.39
4.09
3589
5037
2.894387
GACATGCGCCCTGAGCTC
60.894
66.667
6.82
6.82
40.39
4.09
3590
5038
3.382803
GACATGCGCCCTGAGCTCT
62.383
63.158
16.19
0.00
40.39
4.09
3591
5039
2.895865
CATGCGCCCTGAGCTCTG
60.896
66.667
16.19
14.67
40.39
3.35
3592
5040
3.079478
ATGCGCCCTGAGCTCTGA
61.079
61.111
21.10
1.91
40.39
3.27
3593
5041
2.663075
ATGCGCCCTGAGCTCTGAA
61.663
57.895
21.10
0.00
40.39
3.02
3594
5042
2.511145
GCGCCCTGAGCTCTGAAG
60.511
66.667
21.10
12.95
40.39
3.02
3625
5073
3.689649
CGTTGTTTCTTATCCTCCTTGGG
59.310
47.826
0.00
0.00
36.20
4.12
3626
5074
4.663334
GTTGTTTCTTATCCTCCTTGGGT
58.337
43.478
0.00
0.00
36.20
4.51
3627
5075
5.570034
CGTTGTTTCTTATCCTCCTTGGGTA
60.570
44.000
0.00
0.00
36.20
3.69
3628
5076
5.431179
TGTTTCTTATCCTCCTTGGGTAC
57.569
43.478
0.00
0.00
36.20
3.34
3629
5077
5.098663
TGTTTCTTATCCTCCTTGGGTACT
58.901
41.667
0.00
0.00
36.20
2.73
3630
5078
5.045869
TGTTTCTTATCCTCCTTGGGTACTG
60.046
44.000
0.00
0.00
36.20
2.74
3631
5079
3.039011
TCTTATCCTCCTTGGGTACTGC
58.961
50.000
0.00
0.00
36.20
4.40
3632
5080
2.561209
TATCCTCCTTGGGTACTGCA
57.439
50.000
0.00
0.00
36.20
4.41
3633
5081
1.668826
ATCCTCCTTGGGTACTGCAA
58.331
50.000
0.00
0.00
36.20
4.08
3634
5082
0.984230
TCCTCCTTGGGTACTGCAAG
59.016
55.000
0.00
0.00
36.69
4.01
3635
5083
0.035056
CCTCCTTGGGTACTGCAAGG
60.035
60.000
0.00
0.00
45.20
3.61
3636
5084
0.035056
CTCCTTGGGTACTGCAAGGG
60.035
60.000
2.15
0.00
44.38
3.95
3649
5097
1.298014
CAAGGGTGCCTGACTCTCC
59.702
63.158
0.00
0.00
32.34
3.71
3711
5165
7.307989
CCTTTTGAAAACTGTATGACACGAGAT
60.308
37.037
0.00
0.00
0.00
2.75
3720
5174
5.399013
TGTATGACACGAGATACTGTTGTG
58.601
41.667
0.00
0.00
36.64
3.33
3813
5293
0.935196
GTTCGTTCACTGCGTCCTTT
59.065
50.000
0.00
0.00
0.00
3.11
3815
5295
2.512485
TCGTTCACTGCGTCCTTTAA
57.488
45.000
0.00
0.00
0.00
1.52
3816
5296
2.400399
TCGTTCACTGCGTCCTTTAAG
58.600
47.619
0.00
0.00
0.00
1.85
3817
5297
2.132762
CGTTCACTGCGTCCTTTAAGT
58.867
47.619
0.00
0.00
0.00
2.24
3818
5298
2.096909
CGTTCACTGCGTCCTTTAAGTG
60.097
50.000
0.00
0.00
41.11
3.16
3820
5300
3.462483
TCACTGCGTCCTTTAAGTGAA
57.538
42.857
2.03
0.00
44.45
3.18
3821
5301
3.128349
TCACTGCGTCCTTTAAGTGAAC
58.872
45.455
2.03
0.00
44.45
3.18
3822
5302
2.869801
CACTGCGTCCTTTAAGTGAACA
59.130
45.455
0.00
0.00
42.09
3.18
3823
5303
2.870411
ACTGCGTCCTTTAAGTGAACAC
59.130
45.455
0.00
0.00
0.00
3.32
3835
5321
1.549170
AGTGAACACGGTCCCTGTATC
59.451
52.381
0.00
0.00
36.20
2.24
3839
5325
2.822707
ACACGGTCCCTGTATCTACT
57.177
50.000
0.00
0.00
0.00
2.57
3843
5329
1.955080
CGGTCCCTGTATCTACTCCAC
59.045
57.143
0.00
0.00
0.00
4.02
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
6.703607
TCTTGTATACGTGTTTTCGGGTTTTA
59.296
34.615
0.00
0.00
34.94
1.52
1
2
5.526846
TCTTGTATACGTGTTTTCGGGTTTT
59.473
36.000
0.00
0.00
34.94
2.43
2
3
5.055812
TCTTGTATACGTGTTTTCGGGTTT
58.944
37.500
0.00
0.00
34.94
3.27
3
4
4.630111
TCTTGTATACGTGTTTTCGGGTT
58.370
39.130
0.00
0.00
34.94
4.11
4
5
4.255833
TCTTGTATACGTGTTTTCGGGT
57.744
40.909
0.00
0.00
34.94
5.28
5
6
6.267817
TCTATCTTGTATACGTGTTTTCGGG
58.732
40.000
0.00
0.00
34.94
5.14
6
7
7.745022
TTCTATCTTGTATACGTGTTTTCGG
57.255
36.000
0.00
0.00
34.94
4.30
30
31
6.761242
GGGCGCTTTCATAGGATTTTATTTTT
59.239
34.615
7.64
0.00
0.00
1.94
31
32
6.127196
TGGGCGCTTTCATAGGATTTTATTTT
60.127
34.615
7.64
0.00
0.00
1.82
32
33
5.362430
TGGGCGCTTTCATAGGATTTTATTT
59.638
36.000
7.64
0.00
0.00
1.40
33
34
4.892934
TGGGCGCTTTCATAGGATTTTATT
59.107
37.500
7.64
0.00
0.00
1.40
34
35
4.469657
TGGGCGCTTTCATAGGATTTTAT
58.530
39.130
7.64
0.00
0.00
1.40
35
36
3.882888
CTGGGCGCTTTCATAGGATTTTA
59.117
43.478
7.64
0.00
0.00
1.52
36
37
2.689983
CTGGGCGCTTTCATAGGATTTT
59.310
45.455
7.64
0.00
0.00
1.82
201
283
3.810896
GCGAACCAATGCGGGACC
61.811
66.667
0.00
0.00
40.22
4.46
206
288
1.275657
GTATCGGCGAACCAATGCG
59.724
57.895
15.93
0.00
34.57
4.73
211
293
2.491152
GGACGTATCGGCGAACCA
59.509
61.111
15.93
0.00
34.63
3.67
230
312
2.599142
GGTTTGCGAGAAAACAGACGTC
60.599
50.000
7.70
7.70
41.00
4.34
233
315
1.333791
CCGGTTTGCGAGAAAACAGAC
60.334
52.381
8.75
0.00
41.00
3.51
243
325
0.462225
TGTTTGTCTCCGGTTTGCGA
60.462
50.000
0.00
0.00
0.00
5.10
252
334
2.576615
AGCTCCACTTTGTTTGTCTCC
58.423
47.619
0.00
0.00
0.00
3.71
287
369
1.434188
TGGATTGGCCCGACAGATAT
58.566
50.000
0.00
0.00
34.97
1.63
288
370
1.208706
TTGGATTGGCCCGACAGATA
58.791
50.000
0.00
0.00
34.97
1.98
296
378
0.324275
TACTGGCTTTGGATTGGCCC
60.324
55.000
0.00
0.00
44.71
5.80
313
395
4.583489
TCCGGACAGAAAGAGGATATGTAC
59.417
45.833
0.00
0.00
0.00
2.90
366
456
0.889186
GCAACCTTCCGCCAAAGAGA
60.889
55.000
0.00
0.00
0.00
3.10
579
671
1.161563
GGACACGGACCGCTCAAAAA
61.162
55.000
15.39
0.00
0.00
1.94
580
672
1.595929
GGACACGGACCGCTCAAAA
60.596
57.895
15.39
0.00
0.00
2.44
581
673
2.029964
GGACACGGACCGCTCAAA
59.970
61.111
15.39
0.00
0.00
2.69
582
674
4.351938
CGGACACGGACCGCTCAA
62.352
66.667
15.39
0.00
43.74
3.02
588
680
2.248835
CCACAAACGGACACGGACC
61.249
63.158
0.00
0.00
46.48
4.46
589
681
2.248835
CCCACAAACGGACACGGAC
61.249
63.158
0.00
0.00
46.48
4.79
590
682
2.109387
CCCACAAACGGACACGGA
59.891
61.111
0.00
0.00
46.48
4.69
627
719
0.251787
AGGGTCATTTTGGTGGGCTC
60.252
55.000
0.00
0.00
0.00
4.70
644
736
0.322546
GCCAGTCAAGGGGTACAAGG
60.323
60.000
0.00
0.00
0.00
3.61
686
778
1.997928
GCATTTTCTCCTCGGGCTGC
61.998
60.000
0.00
0.00
0.00
5.25
687
779
1.379642
GGCATTTTCTCCTCGGGCTG
61.380
60.000
0.00
0.00
0.00
4.85
688
780
1.077429
GGCATTTTCTCCTCGGGCT
60.077
57.895
0.00
0.00
0.00
5.19
689
781
1.077429
AGGCATTTTCTCCTCGGGC
60.077
57.895
0.00
0.00
0.00
6.13
703
795
0.793861
GACGTTTTACATGCGAGGCA
59.206
50.000
0.00
0.00
44.86
4.75
953
1050
1.815840
GCTAGTTCTGCGGCCCTTC
60.816
63.158
0.00
0.00
0.00
3.46
993
1090
4.120331
GAACCTGCCATGGCGTGC
62.120
66.667
30.87
18.77
45.51
5.34
994
1091
3.803082
CGAACCTGCCATGGCGTG
61.803
66.667
30.87
25.21
45.51
5.34
1060
1177
7.358765
CGATCGATCCATCATCAGAAAAGTAAC
60.359
40.741
19.51
0.00
0.00
2.50
1089
1529
1.080569
GCACCAAAATCGCACCCAG
60.081
57.895
0.00
0.00
0.00
4.45
1212
1987
1.207089
TCGCATCACTTCCCGAAAGAT
59.793
47.619
4.76
0.00
38.44
2.40
1226
2001
2.032549
CCATCGTTCCTGAATTCGCATC
60.033
50.000
0.04
0.00
0.00
3.91
1227
2002
1.942657
CCATCGTTCCTGAATTCGCAT
59.057
47.619
0.04
0.00
0.00
4.73
1246
2021
0.307760
CCGAAGCACAATTATCGGCC
59.692
55.000
0.00
0.00
46.97
6.13
1247
2022
3.825812
CCGAAGCACAATTATCGGC
57.174
52.632
0.00
0.00
46.97
5.54
1264
2039
3.267551
TCAACCCCAAACTATACCTTCCC
59.732
47.826
0.00
0.00
0.00
3.97
1306
2081
9.325198
TGACATATAATACCTCACATGACAAAC
57.675
33.333
0.00
0.00
0.00
2.93
1398
2182
2.415512
GTGCAGGAACGAAACCATCTAC
59.584
50.000
0.00
0.00
0.00
2.59
1410
2202
2.798976
TGCAAGAAATGTGCAGGAAC
57.201
45.000
0.00
0.00
46.76
3.62
1453
2245
2.042259
CAGCCAGCCATGAAAGCGA
61.042
57.895
0.00
0.00
34.64
4.93
1504
2296
7.500992
TCTAACTATGAGGAACCATGCTTTAG
58.499
38.462
0.00
0.00
0.00
1.85
1555
2392
3.199508
AGCAATCTGAGCTGGTACATTCT
59.800
43.478
0.00
0.00
41.61
2.40
1663
2540
2.681421
GGCTTGAAAGGGGCTGGG
60.681
66.667
0.00
0.00
0.00
4.45
1684
2561
1.143620
GCTAGTGCTGCCTCCAGAG
59.856
63.158
0.00
0.00
41.77
3.35
1702
2579
1.006102
AGAGGCCTCAACAACGTCG
60.006
57.895
33.90
0.00
0.00
5.12
1895
2772
9.373603
TGATTGAAAAATTATCATTCAAGCCAG
57.626
29.630
14.05
0.00
44.53
4.85
1911
2789
6.205076
CCATCACCTGCATTTTGATTGAAAAA
59.795
34.615
2.84
0.00
37.10
1.94
1932
2810
5.865085
TGAATTATAGGTACTGGCACCATC
58.135
41.667
0.00
0.00
41.52
3.51
1970
2848
1.269936
CCACCGTTACTATAAGCCCCG
60.270
57.143
0.00
0.00
0.00
5.73
2040
2918
1.139095
CAGAGCCTCCGTACGAACC
59.861
63.158
18.76
1.89
0.00
3.62
2051
2929
1.135094
CACCATACATCCCAGAGCCT
58.865
55.000
0.00
0.00
0.00
4.58
2060
2938
9.733556
TTATTATACATTGACCCACCATACATC
57.266
33.333
0.00
0.00
0.00
3.06
2111
2989
3.737559
TTGTAAGGACTCATGCCCATT
57.262
42.857
0.00
0.00
0.00
3.16
2121
2999
3.108376
GAGGACCCTGATTGTAAGGACT
58.892
50.000
0.00
0.00
36.91
3.85
2122
3000
2.838202
TGAGGACCCTGATTGTAAGGAC
59.162
50.000
0.00
0.00
36.91
3.85
2142
3020
1.937546
GCTGGAGGGCCAAACGAATG
61.938
60.000
6.18
0.00
45.41
2.67
2147
3025
2.991540
GGTGCTGGAGGGCCAAAC
60.992
66.667
6.18
0.00
45.41
2.93
2247
3125
8.129496
TGCTCAACGGTATGGATTATAGATTA
57.871
34.615
0.00
0.00
0.00
1.75
2251
3129
6.398095
TCATGCTCAACGGTATGGATTATAG
58.602
40.000
0.00
0.00
31.77
1.31
2264
3142
3.168963
CAAAGCTGAATCATGCTCAACG
58.831
45.455
7.45
0.00
38.75
4.10
2485
3478
3.791973
AAGGAACAAATTGTGCGTTGA
57.208
38.095
10.87
0.00
33.15
3.18
2534
3529
9.476202
GTCCCCATTTAAAGCATATAAAATGAC
57.524
33.333
7.92
0.00
40.24
3.06
2564
3561
7.159372
TCAGTGAGAAACAGGGTAAATAGAAC
58.841
38.462
0.00
0.00
0.00
3.01
2575
3572
3.405831
TCTGCAATCAGTGAGAAACAGG
58.594
45.455
12.58
0.00
41.10
4.00
2622
3619
2.286654
GCTGATAAGGAATGCAACTCGC
60.287
50.000
0.00
0.00
42.89
5.03
2631
3628
4.225942
TGAGTGTTCTGGCTGATAAGGAAT
59.774
41.667
0.00
0.00
0.00
3.01
2649
3646
1.830279
ACATGTGGAATGCCTGAGTG
58.170
50.000
0.00
0.00
34.31
3.51
2716
3713
7.301054
AGAACTTAAGAAGCATGTTTGAATCG
58.699
34.615
10.09
0.00
0.00
3.34
2724
3727
7.992754
ATTCAGAAGAACTTAAGAAGCATGT
57.007
32.000
10.09
0.00
36.39
3.21
3131
4553
3.852286
TCACGGTAAATACAACGAGCAT
58.148
40.909
0.00
0.00
0.00
3.79
3276
4698
6.036083
CAGTAATATTTGTGGACCAGTTCTCG
59.964
42.308
0.00
0.00
0.00
4.04
3282
4704
7.312899
GGAAAACAGTAATATTTGTGGACCAG
58.687
38.462
0.00
0.00
0.00
4.00
3387
4809
7.743749
ACTGTGAGAGCAGATAATAATTCCAT
58.256
34.615
0.00
0.00
39.62
3.41
3433
4855
8.414003
GGCATATTGCTGATTAATCATGATCAT
58.586
33.333
18.26
1.18
44.28
2.45
3457
4879
1.273327
CAACTGTTCCAAAGGGATGGC
59.727
52.381
0.00
0.00
44.48
4.40
3460
4882
2.242043
CAGCAACTGTTCCAAAGGGAT
58.758
47.619
0.00
0.00
44.48
3.85
3532
4955
2.007049
GCACCACGCAGCTAGTAACAT
61.007
52.381
0.00
0.00
41.79
2.71
3578
5026
2.511145
GCTTCAGAGCTCAGGGCG
60.511
66.667
17.77
1.07
45.65
6.13
3587
5035
1.287730
AACGCGCTTCAGCTTCAGAG
61.288
55.000
5.73
0.00
39.32
3.35
3588
5036
1.300931
AACGCGCTTCAGCTTCAGA
60.301
52.632
5.73
0.00
39.32
3.27
3589
5037
1.154525
CAACGCGCTTCAGCTTCAG
60.155
57.895
5.73
0.00
39.32
3.02
3590
5038
1.436195
AACAACGCGCTTCAGCTTCA
61.436
50.000
5.73
0.00
39.32
3.02
3591
5039
0.317020
AAACAACGCGCTTCAGCTTC
60.317
50.000
5.73
0.00
39.32
3.86
3592
5040
0.317020
GAAACAACGCGCTTCAGCTT
60.317
50.000
5.73
0.00
39.32
3.74
3593
5041
1.160329
AGAAACAACGCGCTTCAGCT
61.160
50.000
5.73
0.00
39.32
4.24
3594
5042
0.317020
AAGAAACAACGCGCTTCAGC
60.317
50.000
5.73
0.00
37.78
4.26
3595
5043
2.941891
TAAGAAACAACGCGCTTCAG
57.058
45.000
5.73
0.00
0.00
3.02
3596
5044
2.158841
GGATAAGAAACAACGCGCTTCA
59.841
45.455
5.73
0.00
0.00
3.02
3597
5045
2.415512
AGGATAAGAAACAACGCGCTTC
59.584
45.455
5.73
4.24
0.00
3.86
3631
5079
1.197430
AGGAGAGTCAGGCACCCTTG
61.197
60.000
0.00
0.00
0.00
3.61
3632
5080
0.474660
AAGGAGAGTCAGGCACCCTT
60.475
55.000
0.00
0.00
0.00
3.95
3633
5081
0.474660
AAAGGAGAGTCAGGCACCCT
60.475
55.000
0.00
0.00
0.00
4.34
3634
5082
1.276622
TAAAGGAGAGTCAGGCACCC
58.723
55.000
0.00
0.00
0.00
4.61
3635
5083
2.911484
CATAAAGGAGAGTCAGGCACC
58.089
52.381
0.00
0.00
0.00
5.01
3636
5084
2.284190
GCATAAAGGAGAGTCAGGCAC
58.716
52.381
0.00
0.00
0.00
5.01
3665
5113
5.757850
AGGCAAAAGTTCAGAGTACAAAG
57.242
39.130
0.00
0.00
0.00
2.77
3711
5165
2.637382
TCTCATGGCCTTCACAACAGTA
59.363
45.455
3.32
0.00
0.00
2.74
3768
5248
2.425592
CCCACAAGACCTGCGTCA
59.574
61.111
0.00
0.00
41.87
4.35
3769
5249
1.961277
CACCCACAAGACCTGCGTC
60.961
63.158
0.00
0.00
39.50
5.19
3770
5250
1.404479
TACACCCACAAGACCTGCGT
61.404
55.000
0.00
0.00
0.00
5.24
3771
5251
0.036388
ATACACCCACAAGACCTGCG
60.036
55.000
0.00
0.00
0.00
5.18
3813
5293
1.416243
ACAGGGACCGTGTTCACTTA
58.584
50.000
14.09
0.00
0.00
2.24
3815
5295
1.549170
GATACAGGGACCGTGTTCACT
59.451
52.381
23.93
7.90
0.00
3.41
3816
5296
1.549170
AGATACAGGGACCGTGTTCAC
59.451
52.381
23.93
15.06
0.00
3.18
3817
5297
1.933021
AGATACAGGGACCGTGTTCA
58.067
50.000
23.93
8.60
0.00
3.18
3818
5298
3.022406
AGTAGATACAGGGACCGTGTTC
58.978
50.000
23.93
18.96
0.00
3.18
3820
5300
2.652590
GAGTAGATACAGGGACCGTGT
58.347
52.381
22.55
22.55
0.00
4.49
3821
5301
1.955080
GGAGTAGATACAGGGACCGTG
59.045
57.143
12.66
12.66
0.00
4.94
3822
5302
1.567649
TGGAGTAGATACAGGGACCGT
59.432
52.381
0.00
0.00
0.00
4.83
3823
5303
1.955080
GTGGAGTAGATACAGGGACCG
59.045
57.143
0.00
0.00
0.00
4.79
3835
5321
3.119101
ACTGTTTGGCGATAGTGGAGTAG
60.119
47.826
0.00
0.00
39.35
2.57
3839
5325
1.066430
GGACTGTTTGGCGATAGTGGA
60.066
52.381
0.00
0.00
39.35
4.02
3843
5329
1.066143
AGTGGGACTGTTTGGCGATAG
60.066
52.381
0.00
0.00
0.00
2.08
3918
5433
1.132453
GGCAGCCAATCTACGGTTTTC
59.868
52.381
6.55
0.00
0.00
2.29
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.