Multiple sequence alignment - TraesCS5D01G432300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G432300 chr5D 100.000 4329 0 0 1 4329 488432226 488436554 0.000000e+00 7995
1 TraesCS5D01G432300 chr5A 92.360 2788 138 36 1 2751 609270737 609273486 0.000000e+00 3899
2 TraesCS5D01G432300 chr5A 92.457 464 27 5 2744 3206 609273515 609273971 0.000000e+00 656
3 TraesCS5D01G432300 chr5A 80.619 485 48 17 3879 4329 609274715 609275187 2.490000e-87 333
4 TraesCS5D01G432300 chr5A 82.955 352 37 13 3238 3582 609274062 609274397 3.270000e-76 296
5 TraesCS5D01G432300 chr5B 89.974 2294 136 40 505 2751 601416131 601418377 0.000000e+00 2876
6 TraesCS5D01G432300 chr5B 92.170 447 27 5 2760 3206 601418419 601418857 3.680000e-175 625
7 TraesCS5D01G432300 chr5B 87.667 300 28 6 65 361 601415320 601415613 1.490000e-89 340
8 TraesCS5D01G432300 chr5B 81.073 354 40 15 3238 3577 601418948 601419288 1.540000e-64 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G432300 chr5D 488432226 488436554 4328 False 7995.0 7995 100.00000 1 4329 1 chr5D.!!$F1 4328
1 TraesCS5D01G432300 chr5A 609270737 609275187 4450 False 1296.0 3899 87.09775 1 4329 4 chr5A.!!$F1 4328
2 TraesCS5D01G432300 chr5B 601415320 601419288 3968 False 1024.5 2876 87.72100 65 3577 4 chr5B.!!$F1 3512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
673 1088 0.103026 GCGAAATGGGGAAATGAGCC 59.897 55.0 0.0 0.00 0.00 4.70 F
777 1192 0.553819 AACCCAAAGCCCACACTACA 59.446 50.0 0.0 0.00 0.00 2.74 F
1625 2089 0.597637 CCAGGATACGTAAGCTGGCG 60.598 60.0 0.0 8.39 46.39 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1478 1942 2.088056 GTCTGTAAGTGCGTAAACGACG 59.912 50.0 6.71 0.0 45.24 5.12 R
2754 3224 1.035139 AGCTGGCAAAAGGACACAAG 58.965 50.0 0.00 0.0 0.00 3.16 R
3459 4031 0.173481 CTACTAGCTCTGCACGGCAA 59.827 55.0 8.56 0.0 38.41 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 2.668556 TCGAGAGAAACTGCTAACAGCG 60.669 50.000 0.00 0.00 42.44 5.18
106 107 5.622346 AACTCAGCTATCCTTTTCCCTAG 57.378 43.478 0.00 0.00 0.00 3.02
153 154 7.494625 TGTTATTTCCTCATCATAACTCGGTTC 59.505 37.037 0.00 0.00 35.33 3.62
244 249 5.643348 CACAACAGTAGGTATGAATTGAGCA 59.357 40.000 0.00 0.00 0.00 4.26
258 263 6.866480 TGAATTGAGCAACCAAATATCTTCC 58.134 36.000 0.00 0.00 0.00 3.46
280 285 9.268268 CTTCCGCTTACACCTAAAAATGATATA 57.732 33.333 0.00 0.00 0.00 0.86
281 286 9.787435 TTCCGCTTACACCTAAAAATGATATAT 57.213 29.630 0.00 0.00 0.00 0.86
302 307 3.041211 TGTTCCATCCATAGGAGAGTGG 58.959 50.000 0.00 0.00 36.33 4.00
338 343 4.357097 TGTAGATTCATAGCCCTCCTCCTA 59.643 45.833 0.00 0.00 0.00 2.94
374 382 6.569228 ATCGAACATTTATACACACTGTCG 57.431 37.500 0.00 0.00 0.00 4.35
442 451 3.708563 ATCGTGCCCAAAATAAATCCG 57.291 42.857 0.00 0.00 0.00 4.18
450 459 3.119280 CCCAAAATAAATCCGGCTTTCGT 60.119 43.478 6.54 0.00 37.11 3.85
480 489 1.200519 CGAATCTACCACCAGGGGAA 58.799 55.000 0.00 0.00 42.91 3.97
487 496 2.287194 CACCAGGGGAAGGGGGAT 60.287 66.667 0.00 0.00 0.00 3.85
488 497 2.287194 ACCAGGGGAAGGGGGATG 60.287 66.667 0.00 0.00 0.00 3.51
489 498 3.105928 CCAGGGGAAGGGGGATGG 61.106 72.222 0.00 0.00 0.00 3.51
491 500 4.472310 AGGGGAAGGGGGATGGGG 62.472 72.222 0.00 0.00 0.00 4.96
611 1026 2.123077 CCTCCTCCCGCATCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
673 1088 0.103026 GCGAAATGGGGAAATGAGCC 59.897 55.000 0.00 0.00 0.00 4.70
755 1170 4.309950 GTCAACCTCACGGCCCGT 62.310 66.667 1.02 1.02 42.36 5.28
777 1192 0.553819 AACCCAAAGCCCACACTACA 59.446 50.000 0.00 0.00 0.00 2.74
826 1243 1.607612 CCAAAGCTATCCACCGGGT 59.392 57.895 6.32 0.00 34.93 5.28
827 1244 0.748005 CCAAAGCTATCCACCGGGTG 60.748 60.000 20.41 20.41 34.93 4.61
850 1267 4.499116 AGCCCAGGCCCGTATCCT 62.499 66.667 4.70 0.00 43.17 3.24
852 1269 3.616721 CCCAGGCCCGTATCCTCG 61.617 72.222 0.00 0.00 0.00 4.63
864 1282 3.199677 CGTATCCTCGTCACTCTCTCTT 58.800 50.000 0.00 0.00 0.00 2.85
881 1302 2.099652 CTTCGTGCTGACCTGACCCA 62.100 60.000 0.00 0.00 0.00 4.51
905 1336 1.908340 CTCTCCCACCTGCCCTTCTG 61.908 65.000 0.00 0.00 0.00 3.02
935 1366 2.206536 GCTCCTCTCCCCCGATCTG 61.207 68.421 0.00 0.00 0.00 2.90
1016 1465 4.899239 GATGGACGAGGCGGGCAG 62.899 72.222 3.78 0.00 0.00 4.85
1095 1544 4.676586 GGTTTTGACCACGCCGCG 62.677 66.667 12.14 12.14 0.00 6.46
1204 1653 3.243877 CGATCTCGAGAAATTTGTGCGAT 59.756 43.478 20.91 0.00 43.02 4.58
1242 1691 9.667607 AGCTGCTATATATGGATTTACCTCTAT 57.332 33.333 0.00 0.00 39.86 1.98
1243 1692 9.921637 GCTGCTATATATGGATTTACCTCTATC 57.078 37.037 0.00 0.00 39.86 2.08
1250 1699 8.880991 ATATGGATTTACCTCTATCTACGTGT 57.119 34.615 0.00 0.00 39.86 4.49
1251 1700 7.598759 ATGGATTTACCTCTATCTACGTGTT 57.401 36.000 0.00 0.00 39.86 3.32
1252 1701 8.701908 ATGGATTTACCTCTATCTACGTGTTA 57.298 34.615 0.00 0.00 39.86 2.41
1253 1702 8.162878 TGGATTTACCTCTATCTACGTGTTAG 57.837 38.462 0.00 0.00 39.86 2.34
1254 1703 7.776969 TGGATTTACCTCTATCTACGTGTTAGT 59.223 37.037 0.00 0.00 39.86 2.24
1259 1708 5.709164 ACCTCTATCTACGTGTTAGTGTGTT 59.291 40.000 0.00 0.00 0.00 3.32
1262 1711 8.239314 CCTCTATCTACGTGTTAGTGTGTTTTA 58.761 37.037 0.00 0.00 0.00 1.52
1272 1721 5.695816 TGTTAGTGTGTTTTATACGGTGGTC 59.304 40.000 0.00 0.00 0.00 4.02
1353 1808 3.057526 GCCATTTCGCATAGGGTTAATCC 60.058 47.826 0.00 0.00 0.00 3.01
1391 1846 6.325804 AGTCATCCACAACATCATCTAGATCA 59.674 38.462 1.03 0.00 33.72 2.92
1395 1850 5.662657 TCCACAACATCATCTAGATCAAGGA 59.337 40.000 1.03 0.00 33.72 3.36
1397 1852 6.825213 CCACAACATCATCTAGATCAAGGAAA 59.175 38.462 1.03 0.00 33.72 3.13
1439 1901 2.032054 TCAGCAAGCTTCGTTGTTTCAG 59.968 45.455 0.00 0.00 0.00 3.02
1441 1903 1.758783 CAAGCTTCGTTGTTTCAGCC 58.241 50.000 0.00 0.00 32.25 4.85
1478 1942 2.526304 TGCACAGTAGGACAGTGAAC 57.474 50.000 6.35 0.00 37.76 3.18
1625 2089 0.597637 CCAGGATACGTAAGCTGGCG 60.598 60.000 0.00 8.39 46.39 5.69
1771 2236 1.472480 CCGGTTGGGCTAATTTGTCTG 59.528 52.381 0.00 0.00 0.00 3.51
1872 2337 2.527624 TGCACTCCTGCTCTGGGT 60.528 61.111 0.00 0.00 44.57 4.51
1921 2386 7.441157 ACCGTTATGATATTGATTGTGTACCTG 59.559 37.037 0.00 0.00 0.00 4.00
1971 2436 7.042456 GCTTATATCAAAGACAGCTCGATTTCA 60.042 37.037 0.00 0.00 0.00 2.69
2080 2545 8.275040 ACAGGCTGGACTATAATTTCTTTGTAT 58.725 33.333 20.34 0.00 0.00 2.29
2128 2593 7.112122 ACTTTGAGATTACATCAGGCACATAA 58.888 34.615 0.00 0.00 0.00 1.90
2339 2808 4.170256 GGTCAGCGTCTTAGAAGAAGAAG 58.830 47.826 9.08 1.45 36.77 2.85
2359 2828 3.636679 AGCACTATGTCCTCTCTTGCTA 58.363 45.455 0.00 0.00 37.08 3.49
2366 2836 6.876257 ACTATGTCCTCTCTTGCTAAACAAAG 59.124 38.462 0.00 0.00 37.96 2.77
2367 2837 5.036117 TGTCCTCTCTTGCTAAACAAAGT 57.964 39.130 0.00 0.00 37.96 2.66
2741 3211 7.019774 GCTCATGCAATAGTCTACATTTTCA 57.980 36.000 0.00 0.00 39.41 2.69
2828 3334 0.676151 CAGCTGCTCTTCCCCAGTTC 60.676 60.000 0.00 0.00 0.00 3.01
2948 3454 3.564225 AGAAAAGCCTGGTTCTTACAACG 59.436 43.478 0.00 0.00 29.67 4.10
3002 3508 6.711277 TCTTGGATATGCATACCTTATCACC 58.289 40.000 8.99 3.84 34.10 4.02
3025 3531 3.365364 GGTTCCTCGAGCATTTTCTTGTG 60.365 47.826 6.99 0.00 0.00 3.33
3084 3590 7.553881 AGGTAATCGATAAGGTGAATGTTTG 57.446 36.000 0.00 0.00 0.00 2.93
3087 3593 6.683974 AATCGATAAGGTGAATGTTTGGAG 57.316 37.500 0.00 0.00 0.00 3.86
3089 3595 5.556915 TCGATAAGGTGAATGTTTGGAGTT 58.443 37.500 0.00 0.00 0.00 3.01
3090 3596 6.703319 TCGATAAGGTGAATGTTTGGAGTTA 58.297 36.000 0.00 0.00 0.00 2.24
3097 3603 5.238650 GGTGAATGTTTGGAGTTATATCCCG 59.761 44.000 0.00 0.00 38.72 5.14
3122 3628 3.192844 TGACCATCTTCTACTTCGTCCAC 59.807 47.826 0.00 0.00 0.00 4.02
3125 3631 4.115516 CCATCTTCTACTTCGTCCACATG 58.884 47.826 0.00 0.00 0.00 3.21
3146 3652 5.065704 TGTCTCTTAGAGCATGTTGTCTC 57.934 43.478 4.03 0.00 0.00 3.36
3157 3663 3.126858 GCATGTTGTCTCAAGGCGATAAA 59.873 43.478 0.00 0.00 0.00 1.40
3158 3664 4.201950 GCATGTTGTCTCAAGGCGATAAAT 60.202 41.667 0.00 0.00 0.00 1.40
3159 3665 5.007626 GCATGTTGTCTCAAGGCGATAAATA 59.992 40.000 0.00 0.00 0.00 1.40
3160 3666 6.422223 CATGTTGTCTCAAGGCGATAAATAC 58.578 40.000 0.00 0.00 0.00 1.89
3163 3669 6.978659 TGTTGTCTCAAGGCGATAAATACTAG 59.021 38.462 0.00 0.00 0.00 2.57
3170 3676 8.332996 TCAAGGCGATAAATACTAGTACTAGG 57.667 38.462 29.05 14.29 37.49 3.02
3176 3682 7.541437 GCGATAAATACTAGTACTAGGCTTTGG 59.459 40.741 29.05 19.91 37.49 3.28
3182 3688 6.683312 ACTAGTACTAGGCTTTGGTTTTCT 57.317 37.500 29.05 5.14 37.49 2.52
3184 3690 5.306114 AGTACTAGGCTTTGGTTTTCTGT 57.694 39.130 0.00 0.00 0.00 3.41
3185 3691 5.691896 AGTACTAGGCTTTGGTTTTCTGTT 58.308 37.500 0.00 0.00 0.00 3.16
3188 3694 5.201243 ACTAGGCTTTGGTTTTCTGTTTCT 58.799 37.500 0.00 0.00 0.00 2.52
3206 3712 5.642063 TGTTTCTATAACAGCCTAACACTGC 59.358 40.000 0.00 0.00 38.79 4.40
3208 3714 4.755411 TCTATAACAGCCTAACACTGCAC 58.245 43.478 0.00 0.00 38.79 4.57
3209 3715 2.920724 TAACAGCCTAACACTGCACA 57.079 45.000 0.00 0.00 38.79 4.57
3212 3718 3.417069 ACAGCCTAACACTGCACATAA 57.583 42.857 0.00 0.00 38.79 1.90
3213 3719 3.074412 ACAGCCTAACACTGCACATAAC 58.926 45.455 0.00 0.00 38.79 1.89
3214 3720 3.244561 ACAGCCTAACACTGCACATAACT 60.245 43.478 0.00 0.00 38.79 2.24
3215 3721 3.125829 CAGCCTAACACTGCACATAACTG 59.874 47.826 0.00 0.00 0.00 3.16
3216 3722 3.074412 GCCTAACACTGCACATAACTGT 58.926 45.455 0.00 0.00 35.44 3.55
3217 3723 4.020573 AGCCTAACACTGCACATAACTGTA 60.021 41.667 0.00 0.00 33.14 2.74
3219 3725 5.354234 GCCTAACACTGCACATAACTGTAAT 59.646 40.000 0.00 0.00 33.14 1.89
3220 3726 6.675486 GCCTAACACTGCACATAACTGTAATG 60.675 42.308 0.00 0.00 33.14 1.90
3222 3728 7.280876 CCTAACACTGCACATAACTGTAATGAT 59.719 37.037 0.00 0.00 33.14 2.45
3223 3729 6.426980 ACACTGCACATAACTGTAATGATG 57.573 37.500 0.00 0.00 33.14 3.07
3224 3730 6.172630 ACACTGCACATAACTGTAATGATGA 58.827 36.000 0.00 0.00 33.14 2.92
3225 3731 6.825213 ACACTGCACATAACTGTAATGATGAT 59.175 34.615 0.00 0.00 33.14 2.45
3226 3732 7.337689 ACACTGCACATAACTGTAATGATGATT 59.662 33.333 0.00 0.00 33.14 2.57
3227 3733 7.642586 CACTGCACATAACTGTAATGATGATTG 59.357 37.037 0.00 0.00 33.14 2.67
3228 3734 6.497437 TGCACATAACTGTAATGATGATTGC 58.503 36.000 0.00 0.00 33.14 3.56
3229 3735 6.319405 TGCACATAACTGTAATGATGATTGCT 59.681 34.615 0.00 0.00 33.14 3.91
3230 3736 7.148035 TGCACATAACTGTAATGATGATTGCTT 60.148 33.333 0.00 0.00 33.14 3.91
3233 3739 9.182214 ACATAACTGTAATGATGATTGCTTTCT 57.818 29.630 0.00 0.00 32.49 2.52
3246 3811 5.819379 TGATTGCTTTCTTACTGGCTAGATG 59.181 40.000 3.17 0.00 0.00 2.90
3248 3813 5.165961 TGCTTTCTTACTGGCTAGATGTT 57.834 39.130 3.17 0.00 0.00 2.71
3258 3823 9.383519 CTTACTGGCTAGATGTTTTTCTCATAA 57.616 33.333 3.17 0.00 0.00 1.90
3334 3899 4.696899 AAACGGCAATAACTAAGCTTCC 57.303 40.909 0.00 0.00 0.00 3.46
3350 3915 3.189287 AGCTTCCGTGCATAGTTTTCTTG 59.811 43.478 0.00 0.00 34.99 3.02
3352 3917 4.153475 GCTTCCGTGCATAGTTTTCTTGTA 59.847 41.667 0.00 0.00 0.00 2.41
3362 3928 9.899661 TGCATAGTTTTCTTGTATGTAAGGTAT 57.100 29.630 0.00 0.00 0.00 2.73
3372 3939 2.134201 TGTAAGGTATGCGCTCGATG 57.866 50.000 9.73 0.00 0.00 3.84
3373 3940 1.679153 TGTAAGGTATGCGCTCGATGA 59.321 47.619 9.73 0.00 0.00 2.92
3374 3941 2.100087 TGTAAGGTATGCGCTCGATGAA 59.900 45.455 9.73 0.00 0.00 2.57
3375 3942 1.571919 AAGGTATGCGCTCGATGAAC 58.428 50.000 9.73 0.00 0.00 3.18
3383 3950 1.732732 GCGCTCGATGAACACACTAGT 60.733 52.381 0.00 0.00 0.00 2.57
3388 3955 1.825474 CGATGAACACACTAGTCCCCT 59.175 52.381 0.00 0.00 0.00 4.79
3397 3964 4.164604 ACACACTAGTCCCCTTGTAAAACA 59.835 41.667 0.00 0.00 0.00 2.83
3398 3965 5.163131 ACACACTAGTCCCCTTGTAAAACAT 60.163 40.000 0.00 0.00 0.00 2.71
3399 3966 5.411669 CACACTAGTCCCCTTGTAAAACATC 59.588 44.000 0.00 0.00 0.00 3.06
3400 3967 4.941873 CACTAGTCCCCTTGTAAAACATCC 59.058 45.833 0.00 0.00 0.00 3.51
3402 3969 4.675063 AGTCCCCTTGTAAAACATCCAT 57.325 40.909 0.00 0.00 0.00 3.41
3403 3970 5.789574 AGTCCCCTTGTAAAACATCCATA 57.210 39.130 0.00 0.00 0.00 2.74
3404 3971 6.147437 AGTCCCCTTGTAAAACATCCATAA 57.853 37.500 0.00 0.00 0.00 1.90
3406 3973 6.436218 AGTCCCCTTGTAAAACATCCATAAAC 59.564 38.462 0.00 0.00 0.00 2.01
3411 3978 8.093927 CCCTTGTAAAACATCCATAAACATGTT 58.906 33.333 4.92 4.92 43.61 2.71
3414 3981 9.632807 TTGTAAAACATCCATAAACATGTTAGC 57.367 29.630 12.39 0.00 41.42 3.09
3418 3990 9.777297 AAAACATCCATAAACATGTTAGCTTTT 57.223 25.926 12.39 0.00 41.42 2.27
3455 4027 4.024387 GCAGTTGAAATGACGTTCCAAGTA 60.024 41.667 0.00 0.00 0.00 2.24
3459 4031 6.317893 AGTTGAAATGACGTTCCAAGTAACTT 59.682 34.615 0.00 0.00 0.00 2.66
3470 4046 1.601903 CAAGTAACTTTGCCGTGCAGA 59.398 47.619 0.00 0.00 40.61 4.26
3471 4047 1.512926 AGTAACTTTGCCGTGCAGAG 58.487 50.000 12.68 12.68 44.71 3.35
3479 4055 1.066587 GCCGTGCAGAGCTAGTAGG 59.933 63.158 0.00 0.00 0.00 3.18
3514 4091 4.324991 GGTTCCCCGTGGCGTTCT 62.325 66.667 0.00 0.00 0.00 3.01
3519 4096 2.432628 CCCGTGGCGTTCTGTCTC 60.433 66.667 0.00 0.00 0.00 3.36
3520 4097 2.805353 CCGTGGCGTTCTGTCTCG 60.805 66.667 0.00 0.00 38.81 4.04
3521 4098 2.254350 CGTGGCGTTCTGTCTCGA 59.746 61.111 0.00 0.00 41.42 4.04
3522 4099 2.081212 CGTGGCGTTCTGTCTCGAC 61.081 63.158 0.00 0.00 41.42 4.20
3523 4100 2.081212 GTGGCGTTCTGTCTCGACG 61.081 63.158 0.00 0.00 37.97 5.12
3524 4101 2.255881 TGGCGTTCTGTCTCGACGA 61.256 57.895 0.00 0.00 38.99 4.20
3560 4189 2.474410 GGGAACCGGAATATAGCAGG 57.526 55.000 9.46 0.00 40.86 4.85
3562 4191 2.289506 GGGAACCGGAATATAGCAGGTC 60.290 54.545 9.46 0.00 40.86 3.85
3573 4202 2.787473 TAGCAGGTCCAGGTTTCATG 57.213 50.000 0.00 0.00 0.00 3.07
3578 4207 0.598065 GGTCCAGGTTTCATGCACAC 59.402 55.000 0.00 0.00 0.00 3.82
3579 4208 1.609208 GTCCAGGTTTCATGCACACT 58.391 50.000 0.00 0.00 0.00 3.55
3580 4209 1.956477 GTCCAGGTTTCATGCACACTT 59.044 47.619 0.00 0.00 0.00 3.16
3581 4210 1.955778 TCCAGGTTTCATGCACACTTG 59.044 47.619 0.00 0.00 0.00 3.16
3582 4211 1.000060 CCAGGTTTCATGCACACTTGG 60.000 52.381 0.00 0.00 31.98 3.61
3583 4212 1.955778 CAGGTTTCATGCACACTTGGA 59.044 47.619 0.00 0.00 0.00 3.53
3584 4213 2.559668 CAGGTTTCATGCACACTTGGAT 59.440 45.455 0.00 0.00 33.19 3.41
3605 4248 4.797800 TGCAGACTGCTGAGGATATATC 57.202 45.455 26.94 3.96 45.31 1.63
3606 4249 4.414677 TGCAGACTGCTGAGGATATATCT 58.585 43.478 26.94 0.00 45.31 1.98
3607 4250 5.574188 TGCAGACTGCTGAGGATATATCTA 58.426 41.667 26.94 0.00 45.31 1.98
3608 4251 5.651576 TGCAGACTGCTGAGGATATATCTAG 59.348 44.000 26.94 9.48 45.31 2.43
3609 4252 5.652014 GCAGACTGCTGAGGATATATCTAGT 59.348 44.000 20.41 7.55 45.17 2.57
3610 4253 6.183360 GCAGACTGCTGAGGATATATCTAGTC 60.183 46.154 20.41 14.12 45.17 2.59
3622 4265 0.389391 ATCTAGTCGGCCATGGTTCG 59.611 55.000 14.67 17.33 0.00 3.95
3624 4267 2.298158 CTAGTCGGCCATGGTTCGCT 62.298 60.000 14.67 18.39 0.00 4.93
3627 4270 2.514592 CGGCCATGGTTCGCTGAT 60.515 61.111 14.67 0.00 32.89 2.90
3628 4271 2.827051 CGGCCATGGTTCGCTGATG 61.827 63.158 14.67 0.00 32.89 3.07
3629 4272 2.410469 GCCATGGTTCGCTGATGC 59.590 61.111 14.67 0.00 0.00 3.91
3630 4273 2.409055 GCCATGGTTCGCTGATGCA 61.409 57.895 14.67 0.00 39.64 3.96
3631 4274 1.725665 CCATGGTTCGCTGATGCAG 59.274 57.895 2.57 0.00 39.64 4.41
3632 4275 0.745486 CCATGGTTCGCTGATGCAGA 60.745 55.000 2.57 0.00 39.64 4.26
3633 4276 1.089112 CATGGTTCGCTGATGCAGAA 58.911 50.000 0.00 0.00 39.64 3.02
3634 4277 1.674441 CATGGTTCGCTGATGCAGAAT 59.326 47.619 0.00 0.00 39.64 2.40
3635 4278 1.825090 TGGTTCGCTGATGCAGAATT 58.175 45.000 0.00 0.00 39.64 2.17
3636 4279 2.161855 TGGTTCGCTGATGCAGAATTT 58.838 42.857 0.00 0.00 39.64 1.82
3637 4280 3.342719 TGGTTCGCTGATGCAGAATTTA 58.657 40.909 0.00 0.00 39.64 1.40
3638 4281 3.374988 TGGTTCGCTGATGCAGAATTTAG 59.625 43.478 0.00 0.00 39.64 1.85
3639 4282 3.242870 GGTTCGCTGATGCAGAATTTAGG 60.243 47.826 0.00 0.00 39.64 2.69
3640 4283 3.541996 TCGCTGATGCAGAATTTAGGA 57.458 42.857 0.00 0.00 39.64 2.94
3641 4284 4.077300 TCGCTGATGCAGAATTTAGGAT 57.923 40.909 0.00 0.00 39.64 3.24
3642 4285 3.811497 TCGCTGATGCAGAATTTAGGATG 59.189 43.478 0.00 0.00 39.64 3.51
3643 4286 3.058432 CGCTGATGCAGAATTTAGGATGG 60.058 47.826 0.00 0.00 39.64 3.51
3644 4287 3.305199 GCTGATGCAGAATTTAGGATGGC 60.305 47.826 0.00 0.00 39.41 4.40
3645 4288 3.225104 TGATGCAGAATTTAGGATGGCC 58.775 45.455 0.00 0.00 0.00 5.36
3646 4289 2.071778 TGCAGAATTTAGGATGGCCC 57.928 50.000 0.00 0.00 33.31 5.80
3647 4290 7.971596 CTGATGCAGAATTTAGGATGGCCCT 62.972 48.000 0.00 0.00 40.46 5.19
3674 4317 2.347731 GCGTCCTTGGAGAAAACTAGG 58.652 52.381 0.00 0.00 0.00 3.02
3676 4319 2.302157 CGTCCTTGGAGAAAACTAGGGT 59.698 50.000 0.00 0.00 0.00 4.34
3725 4385 3.904136 AGCGCCATATAAAACTGATGC 57.096 42.857 2.29 0.00 0.00 3.91
3727 4387 4.641396 AGCGCCATATAAAACTGATGCTA 58.359 39.130 2.29 0.00 0.00 3.49
3764 4424 5.825507 ACAATCTTTCAGCTTCAGTTTCAC 58.174 37.500 0.00 0.00 0.00 3.18
3769 4429 5.647658 TCTTTCAGCTTCAGTTTCACTTTCA 59.352 36.000 0.00 0.00 0.00 2.69
3772 4432 4.883585 TCAGCTTCAGTTTCACTTTCACAT 59.116 37.500 0.00 0.00 0.00 3.21
3773 4433 4.974275 CAGCTTCAGTTTCACTTTCACATG 59.026 41.667 0.00 0.00 0.00 3.21
3776 4436 5.499139 TTCAGTTTCACTTTCACATGGAC 57.501 39.130 0.00 0.00 0.00 4.02
3777 4437 4.522114 TCAGTTTCACTTTCACATGGACA 58.478 39.130 0.00 0.00 0.00 4.02
3778 4438 4.576053 TCAGTTTCACTTTCACATGGACAG 59.424 41.667 0.00 0.00 0.00 3.51
3779 4439 4.336433 CAGTTTCACTTTCACATGGACAGT 59.664 41.667 0.00 0.00 37.00 3.55
3788 4448 1.471287 CACATGGACAGTGAAGCATGG 59.529 52.381 0.00 0.00 39.30 3.66
3789 4449 0.454600 CATGGACAGTGAAGCATGGC 59.545 55.000 0.00 0.00 0.00 4.40
3790 4450 1.028330 ATGGACAGTGAAGCATGGCG 61.028 55.000 0.00 0.00 0.00 5.69
3793 4453 0.110056 GACAGTGAAGCATGGCGTTG 60.110 55.000 0.00 0.00 0.00 4.10
3812 4472 1.740296 CCTCCGCGTCAAAATCCGT 60.740 57.895 4.92 0.00 0.00 4.69
3816 4476 1.069771 TCCGCGTCAAAATCCGTTTTC 60.070 47.619 4.92 0.00 35.41 2.29
3830 4490 2.158143 CGTTTTCGCGTGCATTTCTAG 58.842 47.619 5.77 0.00 36.22 2.43
3831 4491 2.505866 GTTTTCGCGTGCATTTCTAGG 58.494 47.619 5.77 0.00 0.00 3.02
3832 4492 1.083489 TTTCGCGTGCATTTCTAGGG 58.917 50.000 5.77 0.00 0.00 3.53
3833 4493 0.036765 TTCGCGTGCATTTCTAGGGT 60.037 50.000 5.77 0.00 0.00 4.34
3834 4494 0.818938 TCGCGTGCATTTCTAGGGTA 59.181 50.000 5.77 0.00 0.00 3.69
3835 4495 1.205179 TCGCGTGCATTTCTAGGGTAA 59.795 47.619 5.77 0.00 0.00 2.85
3836 4496 1.326548 CGCGTGCATTTCTAGGGTAAC 59.673 52.381 0.00 0.00 0.00 2.50
3837 4497 2.352388 GCGTGCATTTCTAGGGTAACA 58.648 47.619 0.00 0.00 39.74 2.41
3838 4498 2.943033 GCGTGCATTTCTAGGGTAACAT 59.057 45.455 0.00 0.00 39.74 2.71
3839 4499 3.002348 GCGTGCATTTCTAGGGTAACATC 59.998 47.826 0.00 0.00 39.74 3.06
3840 4500 3.245284 CGTGCATTTCTAGGGTAACATCG 59.755 47.826 0.00 0.00 39.74 3.84
3841 4501 4.439057 GTGCATTTCTAGGGTAACATCGA 58.561 43.478 0.00 0.00 39.74 3.59
3842 4502 4.270325 GTGCATTTCTAGGGTAACATCGAC 59.730 45.833 0.00 0.00 39.74 4.20
3843 4503 3.489785 GCATTTCTAGGGTAACATCGACG 59.510 47.826 0.00 0.00 39.74 5.12
3844 4504 4.679662 CATTTCTAGGGTAACATCGACGT 58.320 43.478 0.00 0.00 39.74 4.34
3848 4508 1.875364 GGGTAACATCGACGTCGGC 60.875 63.158 35.05 18.27 38.12 5.54
3853 4513 2.351322 CATCGACGTCGGCGAGAG 60.351 66.667 35.05 19.27 41.49 3.20
3854 4514 2.818714 ATCGACGTCGGCGAGAGT 60.819 61.111 35.05 14.33 41.49 3.24
3855 4515 3.097137 ATCGACGTCGGCGAGAGTG 62.097 63.158 35.05 13.12 41.49 3.51
3856 4516 3.785499 CGACGTCGGCGAGAGTGA 61.785 66.667 29.70 0.00 42.00 3.41
3857 4517 2.098680 GACGTCGGCGAGAGTGAG 59.901 66.667 20.03 6.75 42.00 3.51
3858 4518 3.384014 GACGTCGGCGAGAGTGAGG 62.384 68.421 20.03 2.68 42.00 3.86
3859 4519 4.180946 CGTCGGCGAGAGTGAGGG 62.181 72.222 11.20 0.00 41.33 4.30
3860 4520 4.500116 GTCGGCGAGAGTGAGGGC 62.500 72.222 11.20 0.00 0.00 5.19
3861 4521 4.742649 TCGGCGAGAGTGAGGGCT 62.743 66.667 4.99 0.00 0.00 5.19
3862 4522 4.200283 CGGCGAGAGTGAGGGCTC 62.200 72.222 0.00 0.00 35.82 4.70
3866 4526 3.844090 GAGAGTGAGGGCTCGGGC 61.844 72.222 0.00 0.00 40.26 6.13
3867 4527 4.704103 AGAGTGAGGGCTCGGGCA 62.704 66.667 10.74 0.00 40.26 5.36
3868 4528 4.459089 GAGTGAGGGCTCGGGCAC 62.459 72.222 10.74 4.92 43.32 5.01
3874 4534 2.124860 GGGCTCGGGCACGTTTAT 60.125 61.111 10.74 0.00 41.85 1.40
3875 4535 2.178235 GGGCTCGGGCACGTTTATC 61.178 63.158 10.74 0.00 41.85 1.75
3876 4536 1.448893 GGCTCGGGCACGTTTATCA 60.449 57.895 10.74 0.00 41.85 2.15
3877 4537 1.702491 GGCTCGGGCACGTTTATCAC 61.702 60.000 10.74 0.00 41.85 3.06
3893 4553 0.319211 TCACGTGACGTTGGATCACC 60.319 55.000 15.76 0.00 42.97 4.02
3907 4567 0.462581 ATCACCACAGCTGCATACGG 60.463 55.000 15.27 9.31 0.00 4.02
3913 4573 2.279741 CACAGCTGCATACGGTAATGT 58.720 47.619 15.27 0.00 0.00 2.71
3942 4602 2.885502 CGGAAGCAGGTTTGTTTGC 58.114 52.632 0.00 0.00 40.57 3.68
3946 4606 0.805711 AAGCAGGTTTGTTTGCGCAC 60.806 50.000 11.12 0.00 44.80 5.34
3948 4608 2.278531 AGGTTTGTTTGCGCACGC 60.279 55.556 11.12 8.33 42.35 5.34
3994 4654 1.880340 CTGCTTCCTCCATCGCGTC 60.880 63.158 5.77 0.00 0.00 5.19
3996 4656 2.278857 CTTCCTCCATCGCGTCCG 60.279 66.667 5.77 0.00 0.00 4.79
3999 4659 3.833645 CCTCCATCGCGTCCGGAA 61.834 66.667 5.23 0.00 34.56 4.30
4002 4662 2.433491 CCATCGCGTCCGGAACAA 60.433 61.111 5.23 0.00 34.56 2.83
4004 4664 2.433664 ATCGCGTCCGGAACAACC 60.434 61.111 5.23 0.00 34.56 3.77
4005 4665 3.229156 ATCGCGTCCGGAACAACCA 62.229 57.895 5.23 0.00 38.90 3.67
4006 4666 2.718747 ATCGCGTCCGGAACAACCAA 62.719 55.000 5.23 0.00 38.90 3.67
4007 4667 2.535788 CGCGTCCGGAACAACCAAA 61.536 57.895 5.23 0.00 38.90 3.28
4009 4669 1.650363 CGTCCGGAACAACCAAACC 59.350 57.895 5.23 0.00 38.90 3.27
4010 4670 1.096386 CGTCCGGAACAACCAAACCA 61.096 55.000 5.23 0.00 38.90 3.67
4017 4702 3.676093 GGAACAACCAAACCAAACCAAA 58.324 40.909 0.00 0.00 38.79 3.28
4020 4705 2.290387 ACAACCAAACCAAACCAAACCC 60.290 45.455 0.00 0.00 0.00 4.11
4039 4724 2.579787 CCGCGACGTGACCATCTC 60.580 66.667 8.23 0.00 0.00 2.75
4060 4745 3.671411 CCCCGATAGTCTCCGGCG 61.671 72.222 0.00 0.00 44.07 6.46
4065 4750 2.123854 ATAGTCTCCGGCGCTCCA 60.124 61.111 7.64 0.00 0.00 3.86
4089 4774 0.036952 CCATTGCCTCAGACGACAGT 60.037 55.000 0.00 0.00 0.00 3.55
4099 4784 2.989824 ACGACAGTCCCACCCGAG 60.990 66.667 0.00 0.00 0.00 4.63
4103 4788 2.046892 CAGTCCCACCCGAGCTTG 60.047 66.667 0.00 0.00 0.00 4.01
4114 4799 1.517913 CGAGCTTGCTCGCAGATGA 60.518 57.895 27.85 0.00 40.05 2.92
4117 4802 0.820226 AGCTTGCTCGCAGATGACTA 59.180 50.000 0.90 0.00 33.89 2.59
4128 4813 1.593750 GATGACTAGCCAGCGCAGG 60.594 63.158 15.57 15.57 37.52 4.85
4136 4821 4.478371 CCAGCGCAGGCATGAGGA 62.478 66.667 11.47 0.00 43.41 3.71
4139 4824 3.344215 GCGCAGGCATGAGGATCG 61.344 66.667 0.62 0.00 37.16 3.69
4140 4825 2.418777 CGCAGGCATGAGGATCGA 59.581 61.111 0.62 0.00 38.61 3.59
4141 4826 1.953138 CGCAGGCATGAGGATCGAC 60.953 63.158 0.62 0.00 38.61 4.20
4143 4828 1.735973 CAGGCATGAGGATCGACGA 59.264 57.895 0.00 0.00 38.61 4.20
4146 4831 0.952280 GGCATGAGGATCGACGACTA 59.048 55.000 0.00 0.00 38.61 2.59
4147 4832 1.542030 GGCATGAGGATCGACGACTAT 59.458 52.381 0.00 0.00 38.61 2.12
4148 4833 2.590073 GCATGAGGATCGACGACTATG 58.410 52.381 0.00 2.27 38.61 2.23
4149 4834 2.590073 CATGAGGATCGACGACTATGC 58.410 52.381 0.00 0.00 38.61 3.14
4150 4835 0.952280 TGAGGATCGACGACTATGCC 59.048 55.000 0.00 0.00 38.61 4.40
4151 4836 1.240256 GAGGATCGACGACTATGCCT 58.760 55.000 0.00 2.13 0.00 4.75
4152 4837 1.609555 GAGGATCGACGACTATGCCTT 59.390 52.381 0.00 0.00 0.00 4.35
4153 4838 2.032620 AGGATCGACGACTATGCCTTT 58.967 47.619 0.00 0.00 0.00 3.11
4154 4839 2.128035 GGATCGACGACTATGCCTTTG 58.872 52.381 0.00 0.00 0.00 2.77
4197 4882 1.661341 GAGGCTCACATCACATCACC 58.339 55.000 10.25 0.00 0.00 4.02
4198 4883 0.254178 AGGCTCACATCACATCACCC 59.746 55.000 0.00 0.00 0.00 4.61
4199 4884 1.091771 GGCTCACATCACATCACCCG 61.092 60.000 0.00 0.00 0.00 5.28
4200 4885 1.709147 GCTCACATCACATCACCCGC 61.709 60.000 0.00 0.00 0.00 6.13
4201 4886 0.391528 CTCACATCACATCACCCGCA 60.392 55.000 0.00 0.00 0.00 5.69
4217 4904 3.261951 CACGCGCCCTATCAACGG 61.262 66.667 5.73 0.00 0.00 4.44
4227 4914 1.376609 CTATCAACGGCCCAACCAGC 61.377 60.000 0.00 0.00 39.03 4.85
4246 4939 1.642952 CGCAGCTCTCCTTTTCAGCC 61.643 60.000 0.00 0.00 33.28 4.85
4255 4948 0.538057 CCTTTTCAGCCAGGACAGCA 60.538 55.000 0.00 0.00 30.81 4.41
4268 4961 3.341043 CAGCAGCAACACGTCGCT 61.341 61.111 0.00 0.00 39.66 4.93
4269 4962 3.038417 AGCAGCAACACGTCGCTC 61.038 61.111 0.00 0.00 35.96 5.03
4276 4969 2.241880 AACACGTCGCTCCGTTTGG 61.242 57.895 0.00 0.00 39.45 3.28
4277 4970 2.660552 CACGTCGCTCCGTTTGGT 60.661 61.111 0.00 0.00 39.45 3.67
4278 4971 2.107546 ACGTCGCTCCGTTTGGTT 59.892 55.556 0.00 0.00 37.96 3.67
4279 4972 1.522130 ACGTCGCTCCGTTTGGTTT 60.522 52.632 0.00 0.00 37.96 3.27
4280 4973 1.083015 CGTCGCTCCGTTTGGTTTG 60.083 57.895 0.00 0.00 36.30 2.93
4281 4974 1.370051 GTCGCTCCGTTTGGTTTGC 60.370 57.895 0.00 0.00 36.30 3.68
4282 4975 1.525077 TCGCTCCGTTTGGTTTGCT 60.525 52.632 0.00 0.00 36.30 3.91
4283 4976 1.370414 CGCTCCGTTTGGTTTGCTG 60.370 57.895 0.00 0.00 36.30 4.41
4284 4977 1.661509 GCTCCGTTTGGTTTGCTGC 60.662 57.895 0.00 0.00 36.30 5.25
4285 4978 1.370414 CTCCGTTTGGTTTGCTGCG 60.370 57.895 0.00 0.00 36.30 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.113354 CTCTCGATTACAAACTACAGGGC 58.887 47.826 0.00 0.00 0.00 5.19
74 75 5.363939 AGGATAGCTGAGTTTGACTTATGC 58.636 41.667 0.00 0.00 0.00 3.14
106 107 4.580580 ACATCCAACAAGTTCAGAAAGGAC 59.419 41.667 0.00 0.00 0.00 3.85
176 181 3.692690 TGTATTTTTGTAGCACCTCCCC 58.307 45.455 0.00 0.00 0.00 4.81
177 182 4.585879 TCTGTATTTTTGTAGCACCTCCC 58.414 43.478 0.00 0.00 0.00 4.30
178 183 4.095036 GCTCTGTATTTTTGTAGCACCTCC 59.905 45.833 0.00 0.00 0.00 4.30
179 184 4.695455 TGCTCTGTATTTTTGTAGCACCTC 59.305 41.667 0.00 0.00 35.20 3.85
180 185 4.651778 TGCTCTGTATTTTTGTAGCACCT 58.348 39.130 0.00 0.00 35.20 4.00
181 186 5.371115 TTGCTCTGTATTTTTGTAGCACC 57.629 39.130 0.00 0.00 39.50 5.01
182 187 6.143919 GGTTTTGCTCTGTATTTTTGTAGCAC 59.856 38.462 0.00 0.00 39.50 4.40
244 249 4.638865 GGTGTAAGCGGAAGATATTTGGTT 59.361 41.667 0.00 0.00 0.00 3.67
280 285 6.033073 GCCACTCTCCTATGGATGGAACAT 62.033 50.000 8.45 0.00 38.92 2.71
281 286 4.768131 GCCACTCTCCTATGGATGGAACA 61.768 52.174 8.45 0.00 38.34 3.18
322 327 0.487772 GGGTAGGAGGAGGGCTATGA 59.512 60.000 0.00 0.00 0.00 2.15
386 394 1.306654 TAGGATCGCAGGTGGGGTT 60.307 57.895 0.00 0.00 0.00 4.11
388 396 2.808206 GGTAGGATCGCAGGTGGGG 61.808 68.421 0.00 0.00 0.00 4.96
442 451 0.520619 GCCGAATCGAAACGAAAGCC 60.521 55.000 3.36 0.00 39.99 4.35
503 512 3.066814 GGTCGCCAGGTACGGTCT 61.067 66.667 0.00 0.00 0.00 3.85
611 1026 2.039418 CCGGAGAGAGAGAGAGAGAGA 58.961 57.143 0.00 0.00 0.00 3.10
642 1057 1.306997 ATTTCGCCCCAGGAGAGGA 60.307 57.895 0.00 0.00 32.27 3.71
755 1170 0.032615 AGTGTGGGCTTTGGGTTGAA 60.033 50.000 0.00 0.00 0.00 2.69
830 1247 4.815973 ATACGGGCCTGGGCTGGA 62.816 66.667 29.97 24.47 38.89 3.86
832 1249 4.256180 GGATACGGGCCTGGGCTG 62.256 72.222 26.00 26.00 41.60 4.85
850 1267 0.517755 GCACGAAGAGAGAGTGACGA 59.482 55.000 0.00 0.00 38.06 4.20
852 1269 1.537638 TCAGCACGAAGAGAGAGTGAC 59.462 52.381 0.00 0.00 38.06 3.67
864 1282 1.913262 ATGGGTCAGGTCAGCACGA 60.913 57.895 0.00 0.00 0.00 4.35
899 1320 0.742635 GCCGGAGAAGAAGCAGAAGG 60.743 60.000 5.05 0.00 0.00 3.46
900 1321 0.248843 AGCCGGAGAAGAAGCAGAAG 59.751 55.000 5.05 0.00 0.00 2.85
901 1322 0.247736 GAGCCGGAGAAGAAGCAGAA 59.752 55.000 5.05 0.00 0.00 3.02
905 1336 1.142965 GAGGAGCCGGAGAAGAAGC 59.857 63.158 5.05 0.00 0.00 3.86
1204 1653 8.206867 CCATATATAGCAGCTAAGAGGCATTTA 58.793 37.037 6.13 0.00 34.17 1.40
1242 1691 6.801377 CCGTATAAAACACACTAACACGTAGA 59.199 38.462 0.00 0.00 33.61 2.59
1243 1692 6.582295 ACCGTATAAAACACACTAACACGTAG 59.418 38.462 0.00 0.00 35.75 3.51
1245 1694 5.175491 CACCGTATAAAACACACTAACACGT 59.825 40.000 0.00 0.00 0.00 4.49
1247 1696 5.466393 ACCACCGTATAAAACACACTAACAC 59.534 40.000 0.00 0.00 0.00 3.32
1248 1697 5.609423 ACCACCGTATAAAACACACTAACA 58.391 37.500 0.00 0.00 0.00 2.41
1249 1698 5.164061 CGACCACCGTATAAAACACACTAAC 60.164 44.000 0.00 0.00 0.00 2.34
1250 1699 4.922692 CGACCACCGTATAAAACACACTAA 59.077 41.667 0.00 0.00 0.00 2.24
1251 1700 4.484236 CGACCACCGTATAAAACACACTA 58.516 43.478 0.00 0.00 0.00 2.74
1252 1701 3.319755 CGACCACCGTATAAAACACACT 58.680 45.455 0.00 0.00 0.00 3.55
1253 1702 2.159801 GCGACCACCGTATAAAACACAC 60.160 50.000 0.00 0.00 41.15 3.82
1254 1703 2.067766 GCGACCACCGTATAAAACACA 58.932 47.619 0.00 0.00 41.15 3.72
1259 1708 2.995258 GTCAAAGCGACCACCGTATAAA 59.005 45.455 0.00 0.00 38.85 1.40
1262 1711 0.606604 AGTCAAAGCGACCACCGTAT 59.393 50.000 0.00 0.00 46.69 3.06
1272 1721 3.904136 AAGATCACCAAAGTCAAAGCG 57.096 42.857 0.00 0.00 0.00 4.68
1353 1808 5.491070 TGTGGATGACTTATTTCCTCACTG 58.509 41.667 0.00 0.00 30.36 3.66
1391 1846 3.928375 GCATCGACATTTGCATTTTCCTT 59.072 39.130 3.89 0.00 38.72 3.36
1395 1850 1.655099 GCGCATCGACATTTGCATTTT 59.345 42.857 0.30 0.00 38.80 1.82
1397 1852 0.452987 AGCGCATCGACATTTGCATT 59.547 45.000 11.47 0.00 38.80 3.56
1439 1901 5.175673 GTGCAAGAAACAATTTCAGTAAGGC 59.824 40.000 4.25 0.00 42.10 4.35
1441 1903 6.974622 ACTGTGCAAGAAACAATTTCAGTAAG 59.025 34.615 4.25 0.00 42.10 2.34
1478 1942 2.088056 GTCTGTAAGTGCGTAAACGACG 59.912 50.000 6.71 0.00 45.24 5.12
1771 2236 8.023128 TCAATTATTACTCTGTTTGAAGCTTGC 58.977 33.333 2.10 0.00 0.00 4.01
1890 2355 7.552687 ACACAATCAATATCATAACGGTGAACT 59.447 33.333 0.00 0.00 0.00 3.01
1971 2436 9.136323 ACCTTCACTTTCTGAATACATTTCTTT 57.864 29.630 0.00 0.00 38.26 2.52
2000 2465 8.463930 AAGGTCTGACTAGATCTGATAAGAAG 57.536 38.462 5.18 0.00 43.62 2.85
2260 2726 3.058432 TCTGGTAGAAGTTGTCGAGTTCG 60.058 47.826 2.53 0.00 41.64 3.95
2323 2792 6.326375 ACATAGTGCTTCTTCTTCTAAGACG 58.674 40.000 0.00 0.00 34.13 4.18
2339 2808 2.977772 AGCAAGAGAGGACATAGTGC 57.022 50.000 0.00 0.00 0.00 4.40
2359 2828 7.715657 TCAGCATTTACAGATTCACTTTGTTT 58.284 30.769 0.00 0.00 0.00 2.83
2366 2836 5.182001 ACCTGTTCAGCATTTACAGATTCAC 59.818 40.000 0.00 0.00 41.33 3.18
2367 2837 5.316167 ACCTGTTCAGCATTTACAGATTCA 58.684 37.500 0.00 0.00 41.33 2.57
2705 3175 1.774639 GCATGAGCAACCAACAACAG 58.225 50.000 0.00 0.00 41.58 3.16
2740 3210 6.377327 AGGACACAAGTTGTTCATTAAGTG 57.623 37.500 5.57 0.00 39.17 3.16
2741 3211 7.404671 AAAGGACACAAGTTGTTCATTAAGT 57.595 32.000 5.57 0.00 39.17 2.24
2747 3217 3.367910 GGCAAAAGGACACAAGTTGTTCA 60.368 43.478 5.57 0.00 39.17 3.18
2748 3218 3.186909 GGCAAAAGGACACAAGTTGTTC 58.813 45.455 5.57 7.59 39.17 3.18
2750 3220 2.166254 CTGGCAAAAGGACACAAGTTGT 59.834 45.455 1.64 1.64 43.10 3.32
2751 3221 2.813061 CTGGCAAAAGGACACAAGTTG 58.187 47.619 0.00 0.00 0.00 3.16
2752 3222 1.136891 GCTGGCAAAAGGACACAAGTT 59.863 47.619 0.00 0.00 0.00 2.66
2754 3224 1.035139 AGCTGGCAAAAGGACACAAG 58.965 50.000 0.00 0.00 0.00 3.16
2755 3225 2.356665 TAGCTGGCAAAAGGACACAA 57.643 45.000 0.00 0.00 0.00 3.33
2828 3334 2.093306 TGACACCATACAGCTTTCGG 57.907 50.000 0.00 0.00 0.00 4.30
2948 3454 2.125106 CCGCCTAGCCAGGTTGAC 60.125 66.667 0.00 0.00 44.68 3.18
3002 3508 1.726853 AGAAAATGCTCGAGGAACCG 58.273 50.000 11.77 0.00 0.00 4.44
3025 3531 3.276857 TGGATCAGAGCAAAGAGAATGC 58.723 45.455 0.00 0.00 44.15 3.56
3084 3590 2.696707 TGGTCACACGGGATATAACTCC 59.303 50.000 0.00 0.00 34.31 3.85
3087 3593 4.602340 AGATGGTCACACGGGATATAAC 57.398 45.455 0.00 0.00 0.00 1.89
3089 3595 4.480115 AGAAGATGGTCACACGGGATATA 58.520 43.478 0.00 0.00 0.00 0.86
3090 3596 3.309296 AGAAGATGGTCACACGGGATAT 58.691 45.455 0.00 0.00 0.00 1.63
3097 3603 4.175787 ACGAAGTAGAAGATGGTCACAC 57.824 45.455 0.00 0.00 41.94 3.82
3122 3628 5.417811 AGACAACATGCTCTAAGAGACATG 58.582 41.667 19.38 19.38 43.15 3.21
3125 3631 5.065704 TGAGACAACATGCTCTAAGAGAC 57.934 43.478 0.00 0.00 32.44 3.36
3146 3652 7.028361 GCCTAGTACTAGTATTTATCGCCTTG 58.972 42.308 24.84 8.45 0.00 3.61
3157 3663 8.258708 CAGAAAACCAAAGCCTAGTACTAGTAT 58.741 37.037 24.84 12.50 0.00 2.12
3158 3664 7.234166 ACAGAAAACCAAAGCCTAGTACTAGTA 59.766 37.037 24.84 0.00 0.00 1.82
3159 3665 6.042897 ACAGAAAACCAAAGCCTAGTACTAGT 59.957 38.462 24.84 8.03 0.00 2.57
3160 3666 6.465084 ACAGAAAACCAAAGCCTAGTACTAG 58.535 40.000 21.11 21.11 0.00 2.57
3163 3669 6.262496 AGAAACAGAAAACCAAAGCCTAGTAC 59.738 38.462 0.00 0.00 0.00 2.73
3182 3688 5.642063 GCAGTGTTAGGCTGTTATAGAAACA 59.358 40.000 0.00 0.00 36.42 2.83
3184 3690 5.642063 GTGCAGTGTTAGGCTGTTATAGAAA 59.358 40.000 0.00 0.00 36.42 2.52
3185 3691 5.175859 GTGCAGTGTTAGGCTGTTATAGAA 58.824 41.667 0.00 0.00 36.42 2.10
3188 3694 4.545208 TGTGCAGTGTTAGGCTGTTATA 57.455 40.909 0.00 0.00 36.42 0.98
3206 3712 9.229784 GAAAGCAATCATCATTACAGTTATGTG 57.770 33.333 0.00 0.00 40.79 3.21
3212 3718 8.671921 CAGTAAGAAAGCAATCATCATTACAGT 58.328 33.333 0.00 0.00 0.00 3.55
3213 3719 8.127327 CCAGTAAGAAAGCAATCATCATTACAG 58.873 37.037 0.00 0.00 0.00 2.74
3214 3720 7.415541 GCCAGTAAGAAAGCAATCATCATTACA 60.416 37.037 0.00 0.00 0.00 2.41
3215 3721 6.914757 GCCAGTAAGAAAGCAATCATCATTAC 59.085 38.462 0.00 0.00 0.00 1.89
3216 3722 6.830324 AGCCAGTAAGAAAGCAATCATCATTA 59.170 34.615 0.00 0.00 0.00 1.90
3217 3723 5.655532 AGCCAGTAAGAAAGCAATCATCATT 59.344 36.000 0.00 0.00 0.00 2.57
3219 3725 4.592942 AGCCAGTAAGAAAGCAATCATCA 58.407 39.130 0.00 0.00 0.00 3.07
3220 3726 6.051717 TCTAGCCAGTAAGAAAGCAATCATC 58.948 40.000 0.00 0.00 0.00 2.92
3222 3728 5.420725 TCTAGCCAGTAAGAAAGCAATCA 57.579 39.130 0.00 0.00 0.00 2.57
3223 3729 5.819901 ACATCTAGCCAGTAAGAAAGCAATC 59.180 40.000 0.00 0.00 0.00 2.67
3224 3730 5.749462 ACATCTAGCCAGTAAGAAAGCAAT 58.251 37.500 0.00 0.00 0.00 3.56
3225 3731 5.165961 ACATCTAGCCAGTAAGAAAGCAA 57.834 39.130 0.00 0.00 0.00 3.91
3226 3732 4.826274 ACATCTAGCCAGTAAGAAAGCA 57.174 40.909 0.00 0.00 0.00 3.91
3227 3733 6.502136 AAAACATCTAGCCAGTAAGAAAGC 57.498 37.500 0.00 0.00 0.00 3.51
3228 3734 8.329203 AGAAAAACATCTAGCCAGTAAGAAAG 57.671 34.615 0.00 0.00 0.00 2.62
3229 3735 7.936847 TGAGAAAAACATCTAGCCAGTAAGAAA 59.063 33.333 0.00 0.00 0.00 2.52
3230 3736 7.450074 TGAGAAAAACATCTAGCCAGTAAGAA 58.550 34.615 0.00 0.00 0.00 2.52
3233 3739 9.162764 GTTATGAGAAAAACATCTAGCCAGTAA 57.837 33.333 0.00 0.00 0.00 2.24
3236 3742 7.550551 TCAGTTATGAGAAAAACATCTAGCCAG 59.449 37.037 0.00 0.00 0.00 4.85
3246 3811 9.195411 TGCAAATTCATCAGTTATGAGAAAAAC 57.805 29.630 0.00 0.00 45.32 2.43
3248 3813 8.030692 CCTGCAAATTCATCAGTTATGAGAAAA 58.969 33.333 0.00 0.00 45.32 2.29
3258 3823 1.547372 GTGGCCTGCAAATTCATCAGT 59.453 47.619 3.32 0.00 0.00 3.41
3283 3848 3.062763 CCAAGATAGGTAAGCAGCATCG 58.937 50.000 0.00 0.00 0.00 3.84
3334 3899 7.148474 ACCTTACATACAAGAAAACTATGCACG 60.148 37.037 0.00 0.00 0.00 5.34
3350 3915 3.278367 TCGAGCGCATACCTTACATAC 57.722 47.619 11.47 0.00 0.00 2.39
3352 3917 2.296190 TCATCGAGCGCATACCTTACAT 59.704 45.455 11.47 0.00 0.00 2.29
3362 3928 0.242555 TAGTGTGTTCATCGAGCGCA 59.757 50.000 11.47 0.00 31.43 6.09
3363 3929 0.917259 CTAGTGTGTTCATCGAGCGC 59.083 55.000 0.00 0.00 0.00 5.92
3372 3939 4.612264 TTACAAGGGGACTAGTGTGTTC 57.388 45.455 0.00 0.00 42.68 3.18
3373 3940 5.128205 GTTTTACAAGGGGACTAGTGTGTT 58.872 41.667 0.00 0.00 42.68 3.32
3374 3941 4.164604 TGTTTTACAAGGGGACTAGTGTGT 59.835 41.667 0.00 0.00 42.68 3.72
3375 3942 4.710324 TGTTTTACAAGGGGACTAGTGTG 58.290 43.478 0.00 0.00 42.68 3.82
3383 3950 6.315714 TGTTTATGGATGTTTTACAAGGGGA 58.684 36.000 0.00 0.00 0.00 4.81
3388 3955 9.632807 GCTAACATGTTTATGGATGTTTTACAA 57.367 29.630 17.78 0.00 41.79 2.41
3397 3964 7.397192 ACAGGAAAAGCTAACATGTTTATGGAT 59.603 33.333 17.78 1.16 38.66 3.41
3398 3965 6.719370 ACAGGAAAAGCTAACATGTTTATGGA 59.281 34.615 17.78 0.00 38.66 3.41
3399 3966 6.924111 ACAGGAAAAGCTAACATGTTTATGG 58.076 36.000 17.78 6.32 38.66 2.74
3400 3967 9.341899 GTTACAGGAAAAGCTAACATGTTTATG 57.658 33.333 17.78 8.78 40.24 1.90
3402 3969 8.453238 TGTTACAGGAAAAGCTAACATGTTTA 57.547 30.769 17.78 2.16 31.38 2.01
3403 3970 7.341445 TGTTACAGGAAAAGCTAACATGTTT 57.659 32.000 17.78 0.00 31.38 2.83
3404 3971 6.952773 TGTTACAGGAAAAGCTAACATGTT 57.047 33.333 16.68 16.68 31.38 2.71
3406 3973 6.734137 TGTTGTTACAGGAAAAGCTAACATG 58.266 36.000 0.00 0.00 31.01 3.21
3411 3978 4.824537 TGCATGTTGTTACAGGAAAAGCTA 59.175 37.500 0.00 0.00 38.29 3.32
3412 3979 3.636300 TGCATGTTGTTACAGGAAAAGCT 59.364 39.130 0.00 0.00 38.29 3.74
3413 3980 3.976169 TGCATGTTGTTACAGGAAAAGC 58.024 40.909 0.00 0.00 38.29 3.51
3414 3981 5.186996 ACTGCATGTTGTTACAGGAAAAG 57.813 39.130 0.00 0.00 38.29 2.27
3440 4012 4.261447 GGCAAAGTTACTTGGAACGTCATT 60.261 41.667 3.27 0.00 34.36 2.57
3443 4015 2.349155 CGGCAAAGTTACTTGGAACGTC 60.349 50.000 3.27 0.00 34.36 4.34
3445 4017 1.600485 ACGGCAAAGTTACTTGGAACG 59.400 47.619 3.27 9.21 34.36 3.95
3455 4027 0.250295 TAGCTCTGCACGGCAAAGTT 60.250 50.000 8.56 0.00 38.41 2.66
3459 4031 0.173481 CTACTAGCTCTGCACGGCAA 59.827 55.000 8.56 0.00 38.41 4.52
3470 4046 3.235200 CAAGGGTGCTATCCTACTAGCT 58.765 50.000 0.00 0.00 43.68 3.32
3471 4047 3.669251 CAAGGGTGCTATCCTACTAGC 57.331 52.381 0.00 0.00 43.61 3.42
3506 4083 2.183858 CTCGTCGAGACAGAACGCCA 62.184 60.000 17.52 0.00 0.00 5.69
3514 4091 4.400109 GGTGCGCTCGTCGAGACA 62.400 66.667 26.11 18.70 41.67 3.41
3520 4097 3.973267 GAGACAGGGTGCGCTCGTC 62.973 68.421 9.73 12.32 0.00 4.20
3521 4098 4.057428 GAGACAGGGTGCGCTCGT 62.057 66.667 9.73 0.00 0.00 4.18
3523 4100 3.691744 CTCGAGACAGGGTGCGCTC 62.692 68.421 6.58 4.47 0.00 5.03
3524 4101 3.753434 CTCGAGACAGGGTGCGCT 61.753 66.667 6.58 0.00 0.00 5.92
3546 4123 1.276421 CCTGGACCTGCTATATTCCGG 59.724 57.143 0.00 0.00 34.67 5.14
3547 4124 1.971357 ACCTGGACCTGCTATATTCCG 59.029 52.381 0.00 0.00 0.00 4.30
3550 4127 5.380043 CATGAAACCTGGACCTGCTATATT 58.620 41.667 0.00 0.00 0.00 1.28
3560 4189 1.609208 AGTGTGCATGAAACCTGGAC 58.391 50.000 0.00 0.00 35.72 4.02
3562 4191 1.000060 CCAAGTGTGCATGAAACCTGG 60.000 52.381 0.00 0.00 0.00 4.45
3573 4202 0.520404 CAGTCTGCATCCAAGTGTGC 59.480 55.000 0.00 0.00 41.61 4.57
3585 4214 5.652014 ACTAGATATATCCTCAGCAGTCTGC 59.348 44.000 17.48 17.48 45.46 4.26
3586 4215 6.037062 CGACTAGATATATCCTCAGCAGTCTG 59.963 46.154 9.18 0.00 41.67 3.51
3587 4216 6.112734 CGACTAGATATATCCTCAGCAGTCT 58.887 44.000 9.18 0.00 0.00 3.24
3605 4248 1.883084 GCGAACCATGGCCGACTAG 60.883 63.158 25.54 7.30 0.00 2.57
3606 4249 2.185867 GCGAACCATGGCCGACTA 59.814 61.111 25.54 0.00 0.00 2.59
3607 4250 3.706373 AGCGAACCATGGCCGACT 61.706 61.111 25.54 19.12 0.00 4.18
3608 4251 3.499737 CAGCGAACCATGGCCGAC 61.500 66.667 25.54 17.62 0.00 4.79
3609 4252 3.030168 ATCAGCGAACCATGGCCGA 62.030 57.895 25.54 9.64 0.00 5.54
3610 4253 2.514592 ATCAGCGAACCATGGCCG 60.515 61.111 13.04 16.92 0.00 6.13
3622 4265 3.305199 GCCATCCTAAATTCTGCATCAGC 60.305 47.826 0.00 0.00 42.57 4.26
3624 4267 3.225104 GGCCATCCTAAATTCTGCATCA 58.775 45.455 0.00 0.00 0.00 3.07
3627 4270 1.570501 AGGGCCATCCTAAATTCTGCA 59.429 47.619 6.18 0.00 45.98 4.41
3628 4271 1.959282 CAGGGCCATCCTAAATTCTGC 59.041 52.381 6.18 0.00 46.12 4.26
3629 4272 1.959282 GCAGGGCCATCCTAAATTCTG 59.041 52.381 6.18 0.00 46.12 3.02
3630 4273 1.477558 CGCAGGGCCATCCTAAATTCT 60.478 52.381 6.18 0.00 46.12 2.40
3631 4274 0.954452 CGCAGGGCCATCCTAAATTC 59.046 55.000 6.18 0.00 46.12 2.17
3632 4275 0.550914 TCGCAGGGCCATCCTAAATT 59.449 50.000 6.18 0.00 46.12 1.82
3633 4276 0.179018 GTCGCAGGGCCATCCTAAAT 60.179 55.000 6.18 0.00 46.12 1.40
3634 4277 1.223487 GTCGCAGGGCCATCCTAAA 59.777 57.895 6.18 0.00 46.12 1.85
3635 4278 2.908015 GTCGCAGGGCCATCCTAA 59.092 61.111 6.18 0.00 46.12 2.69
3636 4279 3.536917 CGTCGCAGGGCCATCCTA 61.537 66.667 6.18 0.00 46.12 2.94
3649 4292 2.758770 TTTCTCCAAGGACGCCGTCG 62.759 60.000 11.60 0.00 42.43 5.12
3650 4293 0.601841 TTTTCTCCAAGGACGCCGTC 60.602 55.000 9.15 9.15 0.00 4.79
3661 4304 2.322658 ACACGACCCTAGTTTTCTCCA 58.677 47.619 0.00 0.00 0.00 3.86
3663 4306 5.987953 AGTTTTACACGACCCTAGTTTTCTC 59.012 40.000 0.00 0.00 0.00 2.87
3664 4307 5.756833 CAGTTTTACACGACCCTAGTTTTCT 59.243 40.000 0.00 0.00 0.00 2.52
3674 4317 9.472361 ACATACATATATCAGTTTTACACGACC 57.528 33.333 0.00 0.00 0.00 4.79
3702 4356 5.530915 AGCATCAGTTTTATATGGCGCTTTA 59.469 36.000 7.64 0.00 0.00 1.85
3736 4396 8.621532 AAACTGAAGCTGAAAGATTGTATGTA 57.378 30.769 0.00 0.00 46.33 2.29
3738 4398 7.536622 GTGAAACTGAAGCTGAAAGATTGTATG 59.463 37.037 0.00 0.00 46.33 2.39
3769 4429 1.830279 CCATGCTTCACTGTCCATGT 58.170 50.000 0.00 0.00 34.69 3.21
3772 4432 1.672030 CGCCATGCTTCACTGTCCA 60.672 57.895 0.00 0.00 0.00 4.02
3773 4433 1.237285 AACGCCATGCTTCACTGTCC 61.237 55.000 0.00 0.00 0.00 4.02
3776 4436 1.443194 GCAACGCCATGCTTCACTG 60.443 57.895 1.30 0.00 43.06 3.66
3777 4437 2.956987 GCAACGCCATGCTTCACT 59.043 55.556 1.30 0.00 43.06 3.41
3793 4453 2.791927 GGATTTTGACGCGGAGGC 59.208 61.111 12.47 0.00 0.00 4.70
3796 4456 0.945813 AAAACGGATTTTGACGCGGA 59.054 45.000 12.47 0.00 36.64 5.54
3798 4458 0.965014 CGAAAACGGATTTTGACGCG 59.035 50.000 3.53 3.53 38.17 6.01
3799 4459 0.700764 GCGAAAACGGATTTTGACGC 59.299 50.000 2.46 0.00 42.30 5.19
3800 4460 0.965014 CGCGAAAACGGATTTTGACG 59.035 50.000 0.00 2.44 38.17 4.35
3801 4461 1.706597 CACGCGAAAACGGATTTTGAC 59.293 47.619 15.93 0.00 38.17 3.18
3802 4462 1.922444 GCACGCGAAAACGGATTTTGA 60.922 47.619 15.93 0.00 38.17 2.69
3803 4463 0.429363 GCACGCGAAAACGGATTTTG 59.571 50.000 15.93 0.00 38.17 2.44
3812 4472 1.466950 CCCTAGAAATGCACGCGAAAA 59.533 47.619 15.93 0.00 0.00 2.29
3816 4476 1.326548 GTTACCCTAGAAATGCACGCG 59.673 52.381 3.53 3.53 0.00 6.01
3830 4490 1.875364 GCCGACGTCGATGTTACCC 60.875 63.158 37.65 11.80 43.02 3.69
3831 4491 2.219562 CGCCGACGTCGATGTTACC 61.220 63.158 37.65 15.15 43.02 2.85
3832 4492 1.192436 CTCGCCGACGTCGATGTTAC 61.192 60.000 37.65 17.84 43.02 2.50
3833 4493 1.061411 CTCGCCGACGTCGATGTTA 59.939 57.895 37.65 17.04 43.02 2.41
3834 4494 2.202440 CTCGCCGACGTCGATGTT 60.202 61.111 37.65 0.00 43.02 2.71
3835 4495 3.097137 CTCTCGCCGACGTCGATGT 62.097 63.158 37.65 10.75 43.02 3.06
3836 4496 2.351322 CTCTCGCCGACGTCGATG 60.351 66.667 37.65 27.44 43.02 3.84
3837 4497 2.818714 ACTCTCGCCGACGTCGAT 60.819 61.111 37.65 11.69 43.02 3.59
3838 4498 3.785499 CACTCTCGCCGACGTCGA 61.785 66.667 37.65 18.22 43.02 4.20
3839 4499 3.703939 CTCACTCTCGCCGACGTCG 62.704 68.421 30.33 30.33 41.18 5.12
3840 4500 2.098680 CTCACTCTCGCCGACGTC 59.901 66.667 5.18 5.18 41.18 4.34
3841 4501 3.432588 CCTCACTCTCGCCGACGT 61.433 66.667 0.00 0.00 41.18 4.34
3842 4502 4.180946 CCCTCACTCTCGCCGACG 62.181 72.222 0.00 0.00 42.01 5.12
3843 4503 4.500116 GCCCTCACTCTCGCCGAC 62.500 72.222 0.00 0.00 0.00 4.79
3844 4504 4.742649 AGCCCTCACTCTCGCCGA 62.743 66.667 0.00 0.00 0.00 5.54
3855 4515 2.588856 ATAAACGTGCCCGAGCCCTC 62.589 60.000 0.00 0.00 38.69 4.30
3856 4516 2.588856 GATAAACGTGCCCGAGCCCT 62.589 60.000 0.00 0.00 38.69 5.19
3857 4517 2.124860 ATAAACGTGCCCGAGCCC 60.125 61.111 0.00 0.00 38.69 5.19
3858 4518 1.448893 TGATAAACGTGCCCGAGCC 60.449 57.895 0.00 0.00 38.69 4.70
3859 4519 1.713830 GTGATAAACGTGCCCGAGC 59.286 57.895 0.00 0.00 37.88 5.03
3869 4529 3.676172 TGATCCAACGTCACGTGATAAAC 59.324 43.478 23.12 8.35 39.99 2.01
3870 4530 3.676172 GTGATCCAACGTCACGTGATAAA 59.324 43.478 23.12 5.08 39.99 1.40
3871 4531 3.247442 GTGATCCAACGTCACGTGATAA 58.753 45.455 23.12 4.35 39.99 1.75
3872 4532 2.416296 GGTGATCCAACGTCACGTGATA 60.416 50.000 23.12 0.00 45.32 2.15
3873 4533 1.671850 GGTGATCCAACGTCACGTGAT 60.672 52.381 23.12 2.60 45.32 3.06
3874 4534 0.319211 GGTGATCCAACGTCACGTGA 60.319 55.000 15.76 15.76 45.32 4.35
3875 4535 0.598942 TGGTGATCCAACGTCACGTG 60.599 55.000 9.94 9.94 45.32 4.49
3876 4536 0.599204 GTGGTGATCCAACGTCACGT 60.599 55.000 0.00 0.00 46.15 4.49
3877 4537 0.598942 TGTGGTGATCCAACGTCACG 60.599 55.000 0.00 0.00 46.15 4.35
3893 4553 2.279741 ACATTACCGTATGCAGCTGTG 58.720 47.619 16.64 3.79 0.00 3.66
3907 4567 2.699212 GCGTTCGCGGGACATTAC 59.301 61.111 6.13 0.00 41.67 1.89
3931 4591 2.278182 AAGCGTGCGCAAACAAACCT 62.278 50.000 14.00 0.00 44.88 3.50
3942 4602 2.174349 GCCAGAGAAAAGCGTGCG 59.826 61.111 0.00 0.00 0.00 5.34
3948 4608 2.483876 TGAAGACACGCCAGAGAAAAG 58.516 47.619 0.00 0.00 0.00 2.27
3960 4620 1.280421 AGCAGGGGAAGATGAAGACAC 59.720 52.381 0.00 0.00 0.00 3.67
3994 4654 1.471851 GGTTTGGTTTGGTTGTTCCGG 60.472 52.381 0.00 0.00 39.52 5.14
3996 4656 3.336138 TTGGTTTGGTTTGGTTGTTCC 57.664 42.857 0.00 0.00 0.00 3.62
3999 4659 2.290387 GGGTTTGGTTTGGTTTGGTTGT 60.290 45.455 0.00 0.00 0.00 3.32
4002 4662 1.279558 GTGGGTTTGGTTTGGTTTGGT 59.720 47.619 0.00 0.00 0.00 3.67
4004 4664 1.740718 CGGTGGGTTTGGTTTGGTTTG 60.741 52.381 0.00 0.00 0.00 2.93
4005 4665 0.537653 CGGTGGGTTTGGTTTGGTTT 59.462 50.000 0.00 0.00 0.00 3.27
4006 4666 1.962321 GCGGTGGGTTTGGTTTGGTT 61.962 55.000 0.00 0.00 0.00 3.67
4007 4667 2.428085 GCGGTGGGTTTGGTTTGGT 61.428 57.895 0.00 0.00 0.00 3.67
4009 4669 2.026879 CGCGGTGGGTTTGGTTTG 59.973 61.111 0.00 0.00 0.00 2.93
4010 4670 2.124236 TCGCGGTGGGTTTGGTTT 60.124 55.556 6.13 0.00 0.00 3.27
4020 4705 3.179265 GATGGTCACGTCGCGGTG 61.179 66.667 6.13 7.84 39.29 4.94
4039 4724 1.179814 CCGGAGACTATCGGGGGAAG 61.180 65.000 0.00 0.00 43.14 3.46
4060 4745 3.134127 GGCAATGGGACGTGGAGC 61.134 66.667 0.00 0.00 0.00 4.70
4065 4750 1.296715 GTCTGAGGCAATGGGACGT 59.703 57.895 0.00 0.00 0.00 4.34
4067 4752 0.741221 GTCGTCTGAGGCAATGGGAC 60.741 60.000 0.00 0.00 0.00 4.46
4089 4774 3.706373 GAGCAAGCTCGGGTGGGA 61.706 66.667 6.28 0.00 33.06 4.37
4099 4784 1.207390 CTAGTCATCTGCGAGCAAGC 58.793 55.000 0.00 0.00 37.71 4.01
4103 4788 0.597118 CTGGCTAGTCATCTGCGAGC 60.597 60.000 0.00 0.00 34.55 5.03
4107 4792 2.243264 GCGCTGGCTAGTCATCTGC 61.243 63.158 0.00 0.00 35.83 4.26
4128 4813 2.590073 CATAGTCGTCGATCCTCATGC 58.410 52.381 0.00 0.00 0.00 4.06
4134 4819 2.128035 CAAAGGCATAGTCGTCGATCC 58.872 52.381 0.00 0.00 0.00 3.36
4136 4821 1.480954 ACCAAAGGCATAGTCGTCGAT 59.519 47.619 0.00 0.00 0.00 3.59
4139 4824 1.278238 CGACCAAAGGCATAGTCGTC 58.722 55.000 9.51 0.00 45.25 4.20
4140 4825 3.436001 CGACCAAAGGCATAGTCGT 57.564 52.632 9.51 0.00 45.25 4.34
4143 4828 1.019278 CGCACGACCAAAGGCATAGT 61.019 55.000 0.00 0.00 0.00 2.12
4146 4831 2.281484 ACGCACGACCAAAGGCAT 60.281 55.556 0.00 0.00 0.00 4.40
4147 4832 2.970324 GACGCACGACCAAAGGCA 60.970 61.111 0.00 0.00 0.00 4.75
4148 4833 4.072088 CGACGCACGACCAAAGGC 62.072 66.667 0.00 0.00 45.77 4.35
4149 4834 4.072088 GCGACGCACGACCAAAGG 62.072 66.667 16.42 0.00 45.77 3.11
4150 4835 2.748546 CTTGCGACGCACGACCAAAG 62.749 60.000 24.42 11.67 45.77 2.77
4151 4836 2.876879 CTTGCGACGCACGACCAAA 61.877 57.895 24.42 4.83 45.77 3.28
4152 4837 3.334751 CTTGCGACGCACGACCAA 61.335 61.111 24.42 5.66 45.77 3.67
4153 4838 3.567478 ATCTTGCGACGCACGACCA 62.567 57.895 28.29 10.92 39.49 4.02
4154 4839 2.789203 GATCTTGCGACGCACGACC 61.789 63.158 28.29 17.75 39.49 4.79
4198 4883 3.925238 GTTGATAGGGCGCGTGCG 61.925 66.667 15.81 10.36 44.10 5.34
4199 4884 3.925238 CGTTGATAGGGCGCGTGC 61.925 66.667 13.78 13.78 41.71 5.34
4200 4885 3.261951 CCGTTGATAGGGCGCGTG 61.262 66.667 8.43 0.00 0.00 5.34
4210 4897 2.676471 GCTGGTTGGGCCGTTGAT 60.676 61.111 0.00 0.00 41.21 2.57
4227 4914 1.642952 GGCTGAAAAGGAGAGCTGCG 61.643 60.000 0.00 0.00 33.03 5.18
4246 4939 1.835483 GACGTGTTGCTGCTGTCCTG 61.835 60.000 0.00 0.00 0.00 3.86
4268 4961 2.718731 CGCAGCAAACCAAACGGA 59.281 55.556 0.00 0.00 0.00 4.69
4301 4994 3.879682 TTCAGCGCCGCATGATGC 61.880 61.111 13.36 7.49 40.69 3.91
4311 5004 3.712881 GGGTGTCACGTTCAGCGC 61.713 66.667 0.00 0.00 46.11 5.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.