Multiple sequence alignment - TraesCS5D01G432200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G432200 chr5D 100.000 7877 0 0 1 7877 488433832 488425956 0.000000e+00 14547.0
1 TraesCS5D01G432200 chr5B 93.348 5758 213 75 1697 7331 601415316 601409606 0.000000e+00 8355.0
2 TraesCS5D01G432200 chr5B 88.462 1144 69 29 1 1103 601417252 601416131 0.000000e+00 1323.0
3 TraesCS5D01G432200 chr5B 94.234 555 25 6 7328 7876 601407336 601406783 0.000000e+00 841.0
4 TraesCS5D01G432200 chr5B 87.667 300 28 6 1247 1543 601415613 601415320 2.720000e-89 340.0
5 TraesCS5D01G432200 chr5A 93.767 4508 147 48 3446 7877 609263833 609259384 0.000000e+00 6645.0
6 TraesCS5D01G432200 chr5A 90.819 2723 150 43 1 2678 609272341 609269674 0.000000e+00 3552.0
7 TraesCS5D01G432200 chr5A 89.237 511 28 15 2821 3329 609269667 609269182 1.450000e-171 614.0
8 TraesCS5D01G432200 chr5A 92.333 300 20 3 3149 3445 609269174 609268875 2.630000e-114 424.0
9 TraesCS5D01G432200 chr7B 89.600 625 44 9 6032 6644 622577522 622578137 0.000000e+00 774.0
10 TraesCS5D01G432200 chr7B 89.137 626 45 11 6032 6644 154311212 154310597 0.000000e+00 758.0
11 TraesCS5D01G432200 chr7B 88.871 620 44 9 6032 6640 702697521 702698126 0.000000e+00 739.0
12 TraesCS5D01G432200 chr7B 89.394 66 3 4 2688 2749 527040302 527040237 6.550000e-11 80.5
13 TraesCS5D01G432200 chr6B 89.440 625 46 8 6032 6644 521450578 521451194 0.000000e+00 771.0
14 TraesCS5D01G432200 chr6B 97.778 45 1 0 2692 2736 127608605 127608649 2.360000e-10 78.7
15 TraesCS5D01G432200 chr3A 93.333 75 5 0 2743 2817 155059593 155059519 2.320000e-20 111.0
16 TraesCS5D01G432200 chr3A 93.333 45 3 0 2692 2736 235839614 235839658 5.100000e-07 67.6
17 TraesCS5D01G432200 chr4A 91.667 72 4 2 2746 2815 594141939 594141868 1.810000e-16 99.0
18 TraesCS5D01G432200 chr6D 90.411 73 6 1 2743 2815 363476318 363476389 2.340000e-15 95.3
19 TraesCS5D01G432200 chr6D 97.778 45 1 0 2692 2736 384370354 384370398 2.360000e-10 78.7
20 TraesCS5D01G432200 chr6D 95.652 46 1 1 2691 2736 24695668 24695712 1.100000e-08 73.1
21 TraesCS5D01G432200 chr6A 90.411 73 6 1 2743 2815 504485811 504485882 2.340000e-15 95.3
22 TraesCS5D01G432200 chr1D 97.778 45 1 0 2692 2736 408246946 408246990 2.360000e-10 78.7
23 TraesCS5D01G432200 chr3B 93.333 45 3 0 2692 2736 263273425 263273469 5.100000e-07 67.6
24 TraesCS5D01G432200 chr7A 94.737 38 2 0 2699 2736 63705679 63705716 8.540000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G432200 chr5D 488425956 488433832 7876 True 14547.00 14547 100.000000 1 7877 1 chr5D.!!$R1 7876
1 TraesCS5D01G432200 chr5B 601406783 601417252 10469 True 2714.75 8355 90.927750 1 7876 4 chr5B.!!$R1 7875
2 TraesCS5D01G432200 chr5A 609259384 609263833 4449 True 6645.00 6645 93.767000 3446 7877 1 chr5A.!!$R1 4431
3 TraesCS5D01G432200 chr5A 609268875 609272341 3466 True 1530.00 3552 90.796333 1 3445 3 chr5A.!!$R2 3444
4 TraesCS5D01G432200 chr7B 622577522 622578137 615 False 774.00 774 89.600000 6032 6644 1 chr7B.!!$F1 612
5 TraesCS5D01G432200 chr7B 154310597 154311212 615 True 758.00 758 89.137000 6032 6644 1 chr7B.!!$R1 612
6 TraesCS5D01G432200 chr7B 702697521 702698126 605 False 739.00 739 88.871000 6032 6640 1 chr7B.!!$F2 608
7 TraesCS5D01G432200 chr6B 521450578 521451194 616 False 771.00 771 89.440000 6032 6644 1 chr6B.!!$F2 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 901 0.032615 AGTGTGGGCTTTGGGTTGAA 60.033 50.000 0.00 0.0 0.00 2.69 F
1284 1744 0.487772 GGGTAGGAGGAGGGCTATGA 59.512 60.000 0.00 0.0 0.00 2.15 F
2285 2748 2.014068 GCTTCCAGGGTTGATTCCTCG 61.014 57.143 0.00 0.0 31.06 4.63 F
2770 3268 0.818296 CGTTGCCTAGGTGCTAGAGT 59.182 55.000 11.31 0.0 36.26 3.24 F
2791 3289 1.003718 GTGGTGCTCGCCTTAGGTT 60.004 57.895 0.00 0.0 0.00 3.50 F
3021 3520 1.466856 ATCATGTGGTGCGCATCTTT 58.533 45.000 23.25 3.3 31.79 2.52 F
4577 5321 1.632589 GGATGGGTTAATGATGGGGC 58.367 55.000 0.00 0.0 0.00 5.80 F
6132 6880 1.552337 CAGCCAGCTAGACTTTCAGGA 59.448 52.381 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 2245 0.253044 AGCTAATGCAGAAGGCCGAA 59.747 50.000 0.00 0.00 43.89 4.30 R
2750 3218 0.528684 CTCTAGCACCTAGGCAACGC 60.529 60.000 9.30 6.83 46.39 4.84 R
4068 4812 0.039346 TGCCGCAAATCACACACATG 60.039 50.000 0.00 0.00 0.00 3.21 R
4185 4929 1.839994 CTAGGCTCCCATCCACAAAGA 59.160 52.381 0.00 0.00 0.00 2.52 R
4577 5321 3.131223 TCCTTCAGCTTGATCTCTTACCG 59.869 47.826 0.00 0.00 0.00 4.02 R
5886 6630 5.190528 ACCTAATCCATTCCGCAGATCATAT 59.809 40.000 0.00 0.00 0.00 1.78 R
6831 7620 0.684805 CCGAAGTCCTCCTAGCCAGT 60.685 60.000 0.00 0.00 0.00 4.00 R
7457 10534 0.174617 GACCACTGGCTAGACTCAGC 59.825 60.000 3.17 0.00 41.02 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 2.088056 GTCTGTAAGTGCGTAAACGACG 59.912 50.000 6.71 0.00 45.24 5.12
167 168 5.175673 GTGCAAGAAACAATTTCAGTAAGGC 59.824 40.000 4.25 0.00 42.10 4.35
209 219 0.452987 AGCGCATCGACATTTGCATT 59.547 45.000 11.47 0.00 38.80 3.56
211 221 1.655099 GCGCATCGACATTTGCATTTT 59.345 42.857 0.30 0.00 38.80 1.82
215 225 3.928375 GCATCGACATTTGCATTTTCCTT 59.072 39.130 3.89 0.00 38.72 3.36
253 263 5.491070 TGTGGATGACTTATTTCCTCACTG 58.509 41.667 0.00 0.00 30.36 3.66
334 350 3.904136 AAGATCACCAAAGTCAAAGCG 57.096 42.857 0.00 0.00 0.00 4.68
344 360 0.606604 AGTCAAAGCGACCACCGTAT 59.393 50.000 0.00 0.00 46.69 3.06
347 363 2.995258 GTCAAAGCGACCACCGTATAAA 59.005 45.455 0.00 0.00 38.85 1.40
352 368 2.067766 GCGACCACCGTATAAAACACA 58.932 47.619 0.00 0.00 41.15 3.72
353 369 2.159801 GCGACCACCGTATAAAACACAC 60.160 50.000 0.00 0.00 41.15 3.82
354 370 3.319755 CGACCACCGTATAAAACACACT 58.680 45.455 0.00 0.00 0.00 3.55
355 371 4.484236 CGACCACCGTATAAAACACACTA 58.516 43.478 0.00 0.00 0.00 2.74
358 374 5.609423 ACCACCGTATAAAACACACTAACA 58.391 37.500 0.00 0.00 0.00 2.41
359 375 5.466393 ACCACCGTATAAAACACACTAACAC 59.534 40.000 0.00 0.00 0.00 3.32
360 376 5.388682 CCACCGTATAAAACACACTAACACG 60.389 44.000 0.00 0.00 0.00 4.49
361 377 5.175491 CACCGTATAAAACACACTAACACGT 59.825 40.000 0.00 0.00 0.00 4.49
362 378 6.362016 CACCGTATAAAACACACTAACACGTA 59.638 38.462 0.00 0.00 0.00 3.57
363 379 6.582295 ACCGTATAAAACACACTAACACGTAG 59.418 38.462 0.00 0.00 35.75 3.51
364 380 6.801377 CCGTATAAAACACACTAACACGTAGA 59.199 38.462 0.00 0.00 33.61 2.59
402 418 8.206867 CCATATATAGCAGCTAAGAGGCATTTA 58.793 37.037 6.13 0.00 34.17 1.40
701 735 1.142965 GAGGAGCCGGAGAAGAAGC 59.857 63.158 5.05 0.00 0.00 3.86
705 739 0.247736 GAGCCGGAGAAGAAGCAGAA 59.752 55.000 5.05 0.00 0.00 3.02
706 740 0.248843 AGCCGGAGAAGAAGCAGAAG 59.751 55.000 5.05 0.00 0.00 2.85
707 741 0.742635 GCCGGAGAAGAAGCAGAAGG 60.743 60.000 5.05 0.00 0.00 3.46
742 789 1.913262 ATGGGTCAGGTCAGCACGA 60.913 57.895 0.00 0.00 0.00 4.35
754 802 1.537638 TCAGCACGAAGAGAGAGTGAC 59.462 52.381 0.00 0.00 38.06 3.67
756 804 0.517755 GCACGAAGAGAGAGTGACGA 59.482 55.000 0.00 0.00 38.06 4.20
774 822 4.256180 GGATACGGGCCTGGGCTG 62.256 72.222 26.00 26.00 41.60 4.85
776 824 4.815973 ATACGGGCCTGGGCTGGA 62.816 66.667 29.97 24.47 38.89 3.86
851 901 0.032615 AGTGTGGGCTTTGGGTTGAA 60.033 50.000 0.00 0.00 0.00 2.69
964 1014 1.306997 ATTTCGCCCCAGGAGAGGA 60.307 57.895 0.00 0.00 32.27 3.71
965 1015 1.341156 ATTTCGCCCCAGGAGAGGAG 61.341 60.000 0.00 0.00 32.27 3.69
995 1045 2.039418 CCGGAGAGAGAGAGAGAGAGA 58.961 57.143 0.00 0.00 0.00 3.10
1103 1153 3.066814 GGTCGCCAGGTACGGTCT 61.067 66.667 0.00 0.00 0.00 3.85
1164 1620 0.520619 GCCGAATCGAAACGAAAGCC 60.521 55.000 3.36 0.00 39.99 4.35
1218 1675 2.808206 GGTAGGATCGCAGGTGGGG 61.808 68.421 0.00 0.00 0.00 4.96
1220 1677 1.306654 TAGGATCGCAGGTGGGGTT 60.307 57.895 0.00 0.00 0.00 4.11
1284 1744 0.487772 GGGTAGGAGGAGGGCTATGA 59.512 60.000 0.00 0.00 0.00 2.15
1325 1785 4.768131 GCCACTCTCCTATGGATGGAACA 61.768 52.174 8.45 0.00 38.34 3.18
1326 1786 6.033073 GCCACTCTCCTATGGATGGAACAT 62.033 50.000 8.45 0.00 38.92 2.71
1362 1822 4.638865 GGTGTAAGCGGAAGATATTTGGTT 59.361 41.667 0.00 0.00 0.00 3.67
1425 1885 5.371115 TTGCTCTGTATTTTTGTAGCACC 57.629 39.130 0.00 0.00 39.50 5.01
1500 1960 4.580580 ACATCCAACAAGTTCAGAAAGGAC 59.419 41.667 0.00 0.00 0.00 3.85
1532 1992 5.363939 AGGATAGCTGAGTTTGACTTATGC 58.636 41.667 0.00 0.00 0.00 3.14
1569 2029 4.113354 CTCTCGATTACAAACTACAGGGC 58.887 47.826 0.00 0.00 0.00 5.19
1682 2142 4.335315 GCAACTAACTAGCCATATTGCACA 59.665 41.667 12.06 0.00 40.46 4.57
1776 2237 5.460646 CATGTTAATCACAAACCAGTCACC 58.539 41.667 0.00 0.00 39.50 4.02
1777 2238 4.527944 TGTTAATCACAAACCAGTCACCA 58.472 39.130 0.00 0.00 29.87 4.17
1778 2239 4.950475 TGTTAATCACAAACCAGTCACCAA 59.050 37.500 0.00 0.00 29.87 3.67
1779 2240 5.419155 TGTTAATCACAAACCAGTCACCAAA 59.581 36.000 0.00 0.00 29.87 3.28
1780 2241 6.097554 TGTTAATCACAAACCAGTCACCAAAT 59.902 34.615 0.00 0.00 29.87 2.32
1781 2242 7.285629 TGTTAATCACAAACCAGTCACCAAATA 59.714 33.333 0.00 0.00 29.87 1.40
1782 2243 6.916360 AATCACAAACCAGTCACCAAATAT 57.084 33.333 0.00 0.00 0.00 1.28
1783 2244 5.957842 TCACAAACCAGTCACCAAATATC 57.042 39.130 0.00 0.00 0.00 1.63
1784 2245 5.630121 TCACAAACCAGTCACCAAATATCT 58.370 37.500 0.00 0.00 0.00 1.98
1785 2246 6.068010 TCACAAACCAGTCACCAAATATCTT 58.932 36.000 0.00 0.00 0.00 2.40
1786 2247 6.206634 TCACAAACCAGTCACCAAATATCTTC 59.793 38.462 0.00 0.00 0.00 2.87
1787 2248 5.181245 ACAAACCAGTCACCAAATATCTTCG 59.819 40.000 0.00 0.00 0.00 3.79
1874 2335 6.093495 TCGTTGCCTCTGTAAAATGGATAAAG 59.907 38.462 0.00 0.00 0.00 1.85
1907 2368 2.233271 CCATTGGTACTGGATGATGCC 58.767 52.381 0.00 0.00 35.70 4.40
1954 2415 3.054434 TGTGGTGCCATATTGCTTAGTCT 60.054 43.478 0.00 0.00 0.00 3.24
2106 2569 6.148948 TCATCCTTTTGCAATTTAGTGTTCG 58.851 36.000 0.00 0.00 0.00 3.95
2186 2649 2.435372 TGCACTGAACCCTCTTTTGT 57.565 45.000 0.00 0.00 0.00 2.83
2285 2748 2.014068 GCTTCCAGGGTTGATTCCTCG 61.014 57.143 0.00 0.00 31.06 4.63
2601 3069 5.045578 ACCTAAATCCATAAGCACAGTCAGT 60.046 40.000 0.00 0.00 0.00 3.41
2706 3174 3.044235 AGCTGCATTGTTTTTAAGGCC 57.956 42.857 1.02 0.00 36.59 5.19
2770 3268 0.818296 CGTTGCCTAGGTGCTAGAGT 59.182 55.000 11.31 0.00 36.26 3.24
2791 3289 1.003718 GTGGTGCTCGCCTTAGGTT 60.004 57.895 0.00 0.00 0.00 3.50
2816 3314 4.885325 CCTTACCGCCTTATAAACAATGGT 59.115 41.667 0.00 0.00 0.00 3.55
2817 3315 5.358725 CCTTACCGCCTTATAAACAATGGTT 59.641 40.000 0.00 0.00 39.43 3.67
2818 3316 6.543100 CCTTACCGCCTTATAAACAATGGTTA 59.457 38.462 0.00 0.00 35.82 2.85
2819 3317 7.255001 CCTTACCGCCTTATAAACAATGGTTAG 60.255 40.741 0.00 0.00 35.82 2.34
2981 3480 3.073274 AGAGGCTGGGTAAATGTTGAC 57.927 47.619 0.00 0.00 0.00 3.18
3021 3520 1.466856 ATCATGTGGTGCGCATCTTT 58.533 45.000 23.25 3.30 31.79 2.52
3033 3532 3.103738 GCGCATCTTTTATTCAGTGCAG 58.896 45.455 0.30 0.00 33.09 4.41
3074 3573 7.975616 CCAACTGAAGGTATGTGATTTTATTGG 59.024 37.037 0.00 0.00 0.00 3.16
3077 3576 8.960591 ACTGAAGGTATGTGATTTTATTGGAAG 58.039 33.333 0.00 0.00 0.00 3.46
3107 3606 4.938226 AGTTTGAGAAGTAGCTGGTATTGC 59.062 41.667 0.00 0.00 0.00 3.56
3108 3607 4.826274 TTGAGAAGTAGCTGGTATTGCT 57.174 40.909 0.00 0.00 43.79 3.91
3109 3608 5.932619 TTGAGAAGTAGCTGGTATTGCTA 57.067 39.130 0.00 0.00 41.46 3.49
3173 3681 8.686334 CCTAGTGCTAAAAACCAATACATTCAT 58.314 33.333 0.00 0.00 0.00 2.57
3647 4391 2.425578 AAAATTTGTTGTACGCCCCG 57.574 45.000 0.00 0.00 0.00 5.73
3669 4413 5.234116 CCGCTTTGCAAACTGAGTTTTATTT 59.766 36.000 8.03 0.00 33.10 1.40
3732 4476 2.034066 TGGAGAAGCCTTTGCGGG 59.966 61.111 0.00 0.00 44.33 6.13
3892 4636 2.235650 CTCTCTTCCTGTGATTGCTCCA 59.764 50.000 0.00 0.00 0.00 3.86
4062 4806 7.373778 ACTCAAGAGTACGTTTTTCTGTTTT 57.626 32.000 0.00 0.00 40.43 2.43
4083 4827 6.580963 TTTTTGTACATGTGTGTGATTTGC 57.419 33.333 9.11 0.00 39.39 3.68
4134 4878 4.697514 CCTTTCGATCTTGCATCTTCCTA 58.302 43.478 0.00 0.00 0.00 2.94
4185 4929 2.555199 CAGGCGCAGAAGCTTATAAGT 58.445 47.619 10.83 0.00 39.10 2.24
4577 5321 1.632589 GGATGGGTTAATGATGGGGC 58.367 55.000 0.00 0.00 0.00 5.80
4803 5547 3.457234 TCGTGCAACATCATATGAGTCC 58.543 45.455 11.78 5.60 35.74 3.85
5886 6630 2.799017 ACTGATGATCAAGGCTTGCAA 58.201 42.857 22.31 6.73 0.00 4.08
5897 6641 1.878088 AGGCTTGCAATATGATCTGCG 59.122 47.619 0.00 0.00 41.63 5.18
5998 6744 4.144297 AGAGTTGCTTATCTTTTGTGGCA 58.856 39.130 0.00 0.00 0.00 4.92
6002 6748 4.439305 TGCTTATCTTTTGTGGCATCAC 57.561 40.909 0.00 0.00 43.87 3.06
6132 6880 1.552337 CAGCCAGCTAGACTTTCAGGA 59.448 52.381 0.00 0.00 0.00 3.86
6263 7024 9.878599 CTTACACCTCTGTTTTTAATGTACTTG 57.121 33.333 0.00 0.00 0.00 3.16
6308 7069 3.922910 TCTGTGTTCTGCTCATCTCAAG 58.077 45.455 0.00 0.00 0.00 3.02
6349 7110 4.834496 TCAGGAGCAACAAATGGAGAAAAT 59.166 37.500 0.00 0.00 0.00 1.82
6406 7167 3.904136 AAGCATCACAACAGTTACTGC 57.096 42.857 12.80 0.00 34.37 4.40
6538 7299 3.513119 TCCAGTCTCTTGGTCAATCTCAG 59.487 47.826 0.00 0.00 39.35 3.35
6591 7352 5.288472 CCTCGCTAAACATGGTAATTTTTGC 59.712 40.000 0.00 0.07 0.00 3.68
6641 7405 1.978580 ACCTCTTCGGAGTTCACCATT 59.021 47.619 0.00 0.00 40.29 3.16
6642 7406 3.056107 CACCTCTTCGGAGTTCACCATTA 60.056 47.826 0.00 0.00 40.29 1.90
6644 7408 4.184629 CCTCTTCGGAGTTCACCATTAAG 58.815 47.826 0.00 0.00 40.29 1.85
6645 7409 4.184629 CTCTTCGGAGTTCACCATTAAGG 58.815 47.826 0.00 0.00 39.23 2.69
6646 7410 2.396590 TCGGAGTTCACCATTAAGGC 57.603 50.000 0.00 0.00 43.14 4.35
6647 7411 1.626321 TCGGAGTTCACCATTAAGGCA 59.374 47.619 0.00 0.00 43.14 4.75
6648 7412 2.238646 TCGGAGTTCACCATTAAGGCAT 59.761 45.455 0.00 0.00 43.14 4.40
6649 7413 3.016736 CGGAGTTCACCATTAAGGCATT 58.983 45.455 0.00 0.00 43.14 3.56
6696 7460 5.640147 TGTCCATATTTCAAAACCTGGAGT 58.360 37.500 0.00 0.00 34.41 3.85
6698 7462 6.884295 TGTCCATATTTCAAAACCTGGAGTAG 59.116 38.462 0.00 0.00 34.41 2.57
6710 7474 4.599047 CCTGGAGTAGGTGATCTTCATC 57.401 50.000 0.00 0.00 42.00 2.92
6724 7488 5.361857 TGATCTTCATCAGCTGTGACATCTA 59.638 40.000 14.67 8.57 33.80 1.98
6786 7568 5.530171 TCACGTAGTATGTTCTATCCTCACC 59.470 44.000 0.00 0.00 41.61 4.02
6787 7569 5.298527 CACGTAGTATGTTCTATCCTCACCA 59.701 44.000 0.00 0.00 41.61 4.17
6831 7620 1.266718 CAAGCAGCTTCTAACCGCAAA 59.733 47.619 4.07 0.00 0.00 3.68
6837 7626 1.523758 CTTCTAACCGCAAACTGGCT 58.476 50.000 0.00 0.00 0.00 4.75
6840 7629 1.066430 TCTAACCGCAAACTGGCTAGG 60.066 52.381 0.85 0.00 0.00 3.02
6849 7638 1.187087 AACTGGCTAGGAGGACTTCG 58.813 55.000 0.85 0.00 0.00 3.79
6878 7667 2.610438 AGCCATGGGAAATGTTGAGT 57.390 45.000 15.13 0.00 0.00 3.41
7032 7821 2.622064 AATTAGGTCTGGCATCGGAC 57.378 50.000 0.00 0.00 46.01 4.79
7106 7897 3.179443 TGGTCTCTGGCAATTCGATAC 57.821 47.619 0.00 0.00 0.00 2.24
7127 7921 7.692291 CGATACATGTTGTTCCAGTGATTTTAC 59.308 37.037 2.30 0.00 0.00 2.01
7128 7922 6.959639 ACATGTTGTTCCAGTGATTTTACT 57.040 33.333 0.00 0.00 0.00 2.24
7129 7923 6.738114 ACATGTTGTTCCAGTGATTTTACTG 58.262 36.000 0.00 0.00 45.93 2.74
7132 7926 3.472652 TGTTCCAGTGATTTTACTGCGT 58.527 40.909 0.00 0.00 45.21 5.24
7133 7927 3.880490 TGTTCCAGTGATTTTACTGCGTT 59.120 39.130 0.00 0.00 45.21 4.84
7134 7928 4.336993 TGTTCCAGTGATTTTACTGCGTTT 59.663 37.500 0.00 0.00 45.21 3.60
7135 7929 5.527951 TGTTCCAGTGATTTTACTGCGTTTA 59.472 36.000 0.00 0.00 45.21 2.01
7136 7930 6.205853 TGTTCCAGTGATTTTACTGCGTTTAT 59.794 34.615 0.00 0.00 45.21 1.40
7137 7931 7.388224 TGTTCCAGTGATTTTACTGCGTTTATA 59.612 33.333 0.00 0.00 45.21 0.98
7138 7932 8.395633 GTTCCAGTGATTTTACTGCGTTTATAT 58.604 33.333 0.00 0.00 45.21 0.86
7139 7933 8.138365 TCCAGTGATTTTACTGCGTTTATATC 57.862 34.615 0.00 0.00 45.21 1.63
7140 7934 7.985184 TCCAGTGATTTTACTGCGTTTATATCT 59.015 33.333 0.00 0.00 45.21 1.98
7141 7935 8.064222 CCAGTGATTTTACTGCGTTTATATCTG 58.936 37.037 0.00 0.00 45.21 2.90
7142 7936 8.817100 CAGTGATTTTACTGCGTTTATATCTGA 58.183 33.333 0.00 0.00 41.31 3.27
7377 10450 6.595716 AGGACATACTTTACTTTCAGTGATGC 59.404 38.462 0.00 0.00 0.00 3.91
7434 10511 8.688336 TTAACGACAAAAATATGAATATCGCG 57.312 30.769 0.00 0.00 0.00 5.87
7445 10522 3.179048 TGAATATCGCGTGTTGTCTCTG 58.821 45.455 5.77 0.00 0.00 3.35
7446 10523 2.941453 ATATCGCGTGTTGTCTCTGT 57.059 45.000 5.77 0.00 0.00 3.41
7448 10525 1.139989 ATCGCGTGTTGTCTCTGTTG 58.860 50.000 5.77 0.00 0.00 3.33
7449 10526 0.874175 TCGCGTGTTGTCTCTGTTGG 60.874 55.000 5.77 0.00 0.00 3.77
7450 10527 1.151777 CGCGTGTTGTCTCTGTTGGT 61.152 55.000 0.00 0.00 0.00 3.67
7451 10528 0.304705 GCGTGTTGTCTCTGTTGGTG 59.695 55.000 0.00 0.00 0.00 4.17
7452 10529 0.304705 CGTGTTGTCTCTGTTGGTGC 59.695 55.000 0.00 0.00 0.00 5.01
7453 10530 1.668419 GTGTTGTCTCTGTTGGTGCT 58.332 50.000 0.00 0.00 0.00 4.40
7454 10531 2.801699 CGTGTTGTCTCTGTTGGTGCTA 60.802 50.000 0.00 0.00 0.00 3.49
7455 10532 2.544267 GTGTTGTCTCTGTTGGTGCTAC 59.456 50.000 0.00 0.00 0.00 3.58
7456 10533 2.434336 TGTTGTCTCTGTTGGTGCTACT 59.566 45.455 0.00 0.00 0.00 2.57
7457 10534 2.802816 GTTGTCTCTGTTGGTGCTACTG 59.197 50.000 0.00 0.00 0.00 2.74
7458 10535 1.270305 TGTCTCTGTTGGTGCTACTGC 60.270 52.381 0.00 0.00 40.20 4.40
7459 10536 1.001406 GTCTCTGTTGGTGCTACTGCT 59.999 52.381 0.00 0.00 40.48 4.24
7460 10537 1.001293 TCTCTGTTGGTGCTACTGCTG 59.999 52.381 0.00 0.00 40.48 4.41
7461 10538 1.001293 CTCTGTTGGTGCTACTGCTGA 59.999 52.381 0.00 0.00 40.48 4.26
7462 10539 1.001293 TCTGTTGGTGCTACTGCTGAG 59.999 52.381 0.00 0.00 40.48 3.35
7463 10540 0.758734 TGTTGGTGCTACTGCTGAGT 59.241 50.000 0.00 0.00 40.48 3.41
7464 10541 1.270305 TGTTGGTGCTACTGCTGAGTC 60.270 52.381 0.00 0.00 40.48 3.36
7469 10548 1.107114 TGCTACTGCTGAGTCTAGCC 58.893 55.000 10.72 0.00 43.02 3.93
7472 10551 2.374184 CTACTGCTGAGTCTAGCCAGT 58.626 52.381 10.72 13.84 43.02 4.00
7519 10598 1.607178 CCCAATGAGCAGCACCCAA 60.607 57.895 0.00 0.00 0.00 4.12
7575 10654 1.833630 TGGATGAGATTCCACTTCGCT 59.166 47.619 0.00 0.00 40.90 4.93
7790 10871 2.358737 AGCCAAAGAAGTCGCCGG 60.359 61.111 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 129 2.526304 TGCACAGTAGGACAGTGAAC 57.474 50.000 6.35 0.00 37.76 3.18
167 168 2.032054 TCAGCAAGCTTCGTTGTTTCAG 59.968 45.455 0.00 0.00 0.00 3.02
209 219 6.825213 CCACAACATCATCTAGATCAAGGAAA 59.175 38.462 1.03 0.00 33.72 3.13
211 221 5.662657 TCCACAACATCATCTAGATCAAGGA 59.337 40.000 1.03 0.00 33.72 3.36
215 225 6.325804 AGTCATCCACAACATCATCTAGATCA 59.674 38.462 1.03 0.00 33.72 2.92
253 263 3.057526 GCCATTTCGCATAGGGTTAATCC 60.058 47.826 0.00 0.00 0.00 3.01
334 350 5.695816 TGTTAGTGTGTTTTATACGGTGGTC 59.304 40.000 0.00 0.00 0.00 4.02
344 360 8.239314 CCTCTATCTACGTGTTAGTGTGTTTTA 58.761 37.037 0.00 0.00 0.00 1.52
347 363 5.709164 ACCTCTATCTACGTGTTAGTGTGTT 59.291 40.000 0.00 0.00 0.00 3.32
352 368 7.776969 TGGATTTACCTCTATCTACGTGTTAGT 59.223 37.037 0.00 0.00 39.86 2.24
353 369 8.162878 TGGATTTACCTCTATCTACGTGTTAG 57.837 38.462 0.00 0.00 39.86 2.34
354 370 8.701908 ATGGATTTACCTCTATCTACGTGTTA 57.298 34.615 0.00 0.00 39.86 2.41
355 371 7.598759 ATGGATTTACCTCTATCTACGTGTT 57.401 36.000 0.00 0.00 39.86 3.32
363 379 9.921637 GCTGCTATATATGGATTTACCTCTATC 57.078 37.037 0.00 0.00 39.86 2.08
364 380 9.667607 AGCTGCTATATATGGATTTACCTCTAT 57.332 33.333 0.00 0.00 39.86 1.98
402 418 3.243877 CGATCTCGAGAAATTTGTGCGAT 59.756 43.478 20.91 0.00 43.02 4.58
511 527 4.676586 GGTTTTGACCACGCCGCG 62.677 66.667 12.14 12.14 0.00 6.46
590 606 4.899239 GATGGACGAGGCGGGCAG 62.899 72.222 3.78 0.00 0.00 4.85
671 705 2.206536 GCTCCTCTCCCCCGATCTG 61.207 68.421 0.00 0.00 0.00 2.90
701 735 1.908340 CTCTCCCACCTGCCCTTCTG 61.908 65.000 0.00 0.00 0.00 3.02
725 769 2.099652 CTTCGTGCTGACCTGACCCA 62.100 60.000 0.00 0.00 0.00 4.51
742 789 3.199677 CGTATCCTCGTCACTCTCTCTT 58.800 50.000 0.00 0.00 0.00 2.85
754 802 3.616721 CCCAGGCCCGTATCCTCG 61.617 72.222 0.00 0.00 0.00 4.63
756 804 4.499116 AGCCCAGGCCCGTATCCT 62.499 66.667 4.70 0.00 43.17 3.24
779 827 0.748005 CCAAAGCTATCCACCGGGTG 60.748 60.000 20.41 20.41 34.93 4.61
780 828 1.607612 CCAAAGCTATCCACCGGGT 59.392 57.895 6.32 0.00 34.93 5.28
829 879 0.553819 AACCCAAAGCCCACACTACA 59.446 50.000 0.00 0.00 0.00 2.74
851 901 4.309950 GTCAACCTCACGGCCCGT 62.310 66.667 1.02 1.02 42.36 5.28
933 983 0.103026 GCGAAATGGGGAAATGAGCC 59.897 55.000 0.00 0.00 0.00 4.70
995 1045 2.123077 CCTCCTCCCGCATCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
1116 1166 3.105928 CAGGGGAAGGGGGATGGG 61.106 72.222 0.00 0.00 0.00 4.00
1117 1167 3.105928 CCAGGGGAAGGGGGATGG 61.106 72.222 0.00 0.00 0.00 3.51
1118 1168 2.287194 ACCAGGGGAAGGGGGATG 60.287 66.667 0.00 0.00 0.00 3.51
1119 1169 2.287194 CACCAGGGGAAGGGGGAT 60.287 66.667 0.00 0.00 0.00 3.85
1126 1176 1.200519 CGAATCTACCACCAGGGGAA 58.799 55.000 0.00 0.00 42.91 3.97
1156 1612 3.119280 CCCAAAATAAATCCGGCTTTCGT 60.119 43.478 6.54 0.00 37.11 3.85
1164 1620 3.708563 ATCGTGCCCAAAATAAATCCG 57.291 42.857 0.00 0.00 0.00 4.18
1232 1689 6.569228 ATCGAACATTTATACACACTGTCG 57.431 37.500 0.00 0.00 0.00 4.35
1268 1725 4.357097 TGTAGATTCATAGCCCTCCTCCTA 59.643 45.833 0.00 0.00 0.00 2.94
1304 1764 3.041211 TGTTCCATCCATAGGAGAGTGG 58.959 50.000 0.00 0.00 36.33 4.00
1325 1785 9.787435 TTCCGCTTACACCTAAAAATGATATAT 57.213 29.630 0.00 0.00 0.00 0.86
1326 1786 9.268268 CTTCCGCTTACACCTAAAAATGATATA 57.732 33.333 0.00 0.00 0.00 0.86
1348 1808 6.866480 TGAATTGAGCAACCAAATATCTTCC 58.134 36.000 0.00 0.00 0.00 3.46
1362 1822 5.643348 CACAACAGTAGGTATGAATTGAGCA 59.357 40.000 0.00 0.00 0.00 4.26
1453 1913 7.494625 TGTTATTTCCTCATCATAACTCGGTTC 59.505 37.037 0.00 0.00 35.33 3.62
1500 1960 5.622346 AACTCAGCTATCCTTTTCCCTAG 57.378 43.478 0.00 0.00 0.00 3.02
1532 1992 2.668556 TCGAGAGAAACTGCTAACAGCG 60.669 50.000 0.00 0.00 42.44 5.18
1682 2142 5.344566 ACCCCCTTTTTGATGATTTCAGAT 58.655 37.500 0.00 0.00 35.27 2.90
1776 2237 2.945008 TGCAGAAGGCCGAAGATATTTG 59.055 45.455 0.00 0.00 43.89 2.32
1777 2238 3.281727 TGCAGAAGGCCGAAGATATTT 57.718 42.857 0.00 0.00 43.89 1.40
1778 2239 3.498774 ATGCAGAAGGCCGAAGATATT 57.501 42.857 0.00 0.00 43.89 1.28
1779 2240 3.498774 AATGCAGAAGGCCGAAGATAT 57.501 42.857 0.00 0.00 43.89 1.63
1780 2241 3.803715 GCTAATGCAGAAGGCCGAAGATA 60.804 47.826 0.00 0.00 43.89 1.98
1781 2242 2.843701 CTAATGCAGAAGGCCGAAGAT 58.156 47.619 0.00 0.00 43.89 2.40
1782 2243 1.743772 GCTAATGCAGAAGGCCGAAGA 60.744 52.381 0.00 0.00 43.89 2.87
1783 2244 0.659957 GCTAATGCAGAAGGCCGAAG 59.340 55.000 0.00 0.00 43.89 3.79
1784 2245 0.253044 AGCTAATGCAGAAGGCCGAA 59.747 50.000 0.00 0.00 43.89 4.30
1785 2246 0.462581 CAGCTAATGCAGAAGGCCGA 60.463 55.000 0.00 0.00 43.89 5.54
1786 2247 0.745845 ACAGCTAATGCAGAAGGCCG 60.746 55.000 0.00 0.00 43.89 6.13
1787 2248 1.403323 GAACAGCTAATGCAGAAGGCC 59.597 52.381 0.00 0.00 43.89 5.19
1954 2415 4.696455 AGAAACTAACGTCCCTCGAAAAA 58.304 39.130 0.00 0.00 42.86 1.94
2001 2462 8.906693 GCTTTAAGAATTCTAACAAGCAGAAAC 58.093 33.333 26.39 8.63 35.73 2.78
2070 2533 7.465353 TGCAAAAGGATGATACTGAAATCAA 57.535 32.000 0.00 0.00 39.25 2.57
2545 3013 8.729756 TGAGTCCATGATTATATTTTATTGCGG 58.270 33.333 0.00 0.00 0.00 5.69
2706 3174 1.067821 CCTAAGCGTCTAAGGCAGGAG 59.932 57.143 0.00 0.00 27.35 3.69
2750 3218 0.528684 CTCTAGCACCTAGGCAACGC 60.529 60.000 9.30 6.83 46.39 4.84
2751 3219 0.818296 ACTCTAGCACCTAGGCAACG 59.182 55.000 9.30 0.00 46.39 4.10
2752 3220 1.134670 CCACTCTAGCACCTAGGCAAC 60.135 57.143 9.30 0.00 35.03 4.17
2753 3221 1.195115 CCACTCTAGCACCTAGGCAA 58.805 55.000 9.30 0.00 35.03 4.52
2754 3222 0.687757 CCCACTCTAGCACCTAGGCA 60.688 60.000 9.30 0.00 35.03 4.75
2755 3223 0.688087 ACCCACTCTAGCACCTAGGC 60.688 60.000 9.30 0.00 35.03 3.93
2762 3260 1.536418 AGCACCACCCACTCTAGCA 60.536 57.895 0.00 0.00 0.00 3.49
2770 3268 2.925706 TAAGGCGAGCACCACCCA 60.926 61.111 0.00 0.00 0.00 4.51
2816 3314 4.082300 CACCAACATGCCAATTACAGCTAA 60.082 41.667 0.00 0.00 0.00 3.09
2817 3315 3.443329 CACCAACATGCCAATTACAGCTA 59.557 43.478 0.00 0.00 0.00 3.32
2818 3316 2.231964 CACCAACATGCCAATTACAGCT 59.768 45.455 0.00 0.00 0.00 4.24
2819 3317 2.609350 CACCAACATGCCAATTACAGC 58.391 47.619 0.00 0.00 0.00 4.40
2981 3480 7.892778 TGATTCACATTCAATTTTGTCCATG 57.107 32.000 0.00 0.00 0.00 3.66
3074 3573 8.865001 CAGCTACTTCTCAAACTAATGTACTTC 58.135 37.037 0.00 0.00 0.00 3.01
3077 3576 7.097834 ACCAGCTACTTCTCAAACTAATGTAC 58.902 38.462 0.00 0.00 0.00 2.90
3084 3583 4.938226 GCAATACCAGCTACTTCTCAAACT 59.062 41.667 0.00 0.00 0.00 2.66
3173 3681 8.783093 CAGAGTAAGACATTTAAAACATGGTGA 58.217 33.333 0.00 0.00 0.00 4.02
3403 4103 4.637483 ACGATGGCTCATGTAAAATTGG 57.363 40.909 0.00 0.00 0.00 3.16
3634 4378 2.111460 AAAGCGGGGCGTACAACA 59.889 55.556 0.00 0.00 0.00 3.33
3647 4391 7.169813 AGCTAAATAAAACTCAGTTTGCAAAGC 59.830 33.333 13.26 9.66 35.80 3.51
3669 4413 6.071616 ACACAAAAAGAAAGGTTTCACAGCTA 60.072 34.615 5.30 0.00 39.61 3.32
3732 4476 0.179145 GTGTGATGCATCAAGCTGCC 60.179 55.000 30.24 17.10 45.94 4.85
3892 4636 4.597004 ACCTCATGTTCTCAATTGCAGAT 58.403 39.130 0.00 0.00 0.00 2.90
4062 4806 4.286101 CGCAAATCACACACATGTACAAA 58.714 39.130 0.00 0.00 36.72 2.83
4064 4808 2.225255 CCGCAAATCACACACATGTACA 59.775 45.455 0.00 0.00 36.72 2.90
4068 4812 0.039346 TGCCGCAAATCACACACATG 60.039 50.000 0.00 0.00 0.00 3.21
4083 4827 6.147164 CCAATAATAATACTACAGTGGTGCCG 59.853 42.308 0.00 0.00 0.00 5.69
4185 4929 1.839994 CTAGGCTCCCATCCACAAAGA 59.160 52.381 0.00 0.00 0.00 2.52
4577 5321 3.131223 TCCTTCAGCTTGATCTCTTACCG 59.869 47.826 0.00 0.00 0.00 4.02
5886 6630 5.190528 ACCTAATCCATTCCGCAGATCATAT 59.809 40.000 0.00 0.00 0.00 1.78
5998 6744 9.174166 AGTTTAATAGGAAAAACATAGCGTGAT 57.826 29.630 0.00 0.00 37.92 3.06
6002 6748 8.060090 CCGTAGTTTAATAGGAAAAACATAGCG 58.940 37.037 0.00 0.00 37.92 4.26
6132 6880 3.298686 TCTGAGATCGATACCACCTGT 57.701 47.619 0.00 0.00 0.00 4.00
6263 7024 8.940952 AGATAACTGAGCAGAAAACAATAGAAC 58.059 33.333 4.21 0.00 0.00 3.01
6271 7032 5.931441 ACACAGATAACTGAGCAGAAAAC 57.069 39.130 7.05 0.00 46.03 2.43
6308 7069 7.766278 TGCTCCTGAGAAACAAATAATAGAGTC 59.234 37.037 0.00 0.00 0.00 3.36
6349 7110 3.515502 CTGGAAGACCTGGTTCATAGTCA 59.484 47.826 0.00 0.00 34.07 3.41
6406 7167 2.469952 ACAATTCCATTGACCCATGGG 58.530 47.619 30.23 30.23 42.83 4.00
6433 7194 5.175856 GGAACTAGTATCATAACAGCAAGCG 59.824 44.000 0.00 0.00 0.00 4.68
6538 7299 5.525378 AGATTCAGACCGCATAGTTTGATTC 59.475 40.000 0.00 0.00 34.19 2.52
6591 7352 4.462133 AGAAATGGAGAAGATGAGCATGG 58.538 43.478 0.00 0.00 0.00 3.66
6641 7405 6.014669 ACCAGCTTTCAATGTTTAATGCCTTA 60.015 34.615 0.00 0.00 0.00 2.69
6642 7406 5.221702 ACCAGCTTTCAATGTTTAATGCCTT 60.222 36.000 0.00 0.00 0.00 4.35
6644 7408 4.568956 ACCAGCTTTCAATGTTTAATGCC 58.431 39.130 0.00 0.00 0.00 4.40
6645 7409 5.289434 GCTACCAGCTTTCAATGTTTAATGC 59.711 40.000 0.00 0.00 38.45 3.56
6646 7410 6.875926 GCTACCAGCTTTCAATGTTTAATG 57.124 37.500 0.00 0.00 38.45 1.90
6696 7460 4.026052 TCACAGCTGATGAAGATCACCTA 58.974 43.478 23.35 0.00 34.71 3.08
6698 7462 2.935201 GTCACAGCTGATGAAGATCACC 59.065 50.000 23.35 3.31 34.71 4.02
6706 7470 3.065925 CGTCTAGATGTCACAGCTGATGA 59.934 47.826 23.35 17.05 30.76 2.92
6710 7474 1.800655 GCCGTCTAGATGTCACAGCTG 60.801 57.143 13.48 13.48 30.76 4.24
6766 7530 7.783042 AGTTTGGTGAGGATAGAACATACTAC 58.217 38.462 0.00 0.00 0.00 2.73
6786 7568 1.151668 CCTGCGAAGACCAGAGTTTG 58.848 55.000 0.00 0.00 32.03 2.93
6787 7569 1.048601 TCCTGCGAAGACCAGAGTTT 58.951 50.000 0.00 0.00 32.03 2.66
6831 7620 0.684805 CCGAAGTCCTCCTAGCCAGT 60.685 60.000 0.00 0.00 0.00 4.00
6837 7626 2.297698 TGTTCACCGAAGTCCTCCTA 57.702 50.000 0.00 0.00 0.00 2.94
6840 7629 2.031944 GCTTTTGTTCACCGAAGTCCTC 60.032 50.000 0.00 0.00 0.00 3.71
6849 7638 1.337118 TCCCATGGCTTTTGTTCACC 58.663 50.000 6.09 0.00 0.00 4.02
6878 7667 1.279271 GCTGGGTAGGAAGAAGCTTCA 59.721 52.381 27.57 4.18 0.00 3.02
7032 7821 9.289303 CAAATGGATTATTAACTGGTTTCTTCG 57.711 33.333 0.00 0.00 0.00 3.79
7106 7897 5.630680 GCAGTAAAATCACTGGAACAACATG 59.369 40.000 5.49 0.00 45.03 3.21
7127 7921 5.971792 TCGACTCTTTCAGATATAAACGCAG 59.028 40.000 0.00 0.00 0.00 5.18
7128 7922 5.886992 TCGACTCTTTCAGATATAAACGCA 58.113 37.500 0.00 0.00 0.00 5.24
7129 7923 6.994868 ATCGACTCTTTCAGATATAAACGC 57.005 37.500 0.00 0.00 0.00 4.84
7391 10464 7.646130 TGTCGTTAATAAAAGTGAAAAAGGCTG 59.354 33.333 0.00 0.00 0.00 4.85
7426 10503 3.232213 ACAGAGACAACACGCGATATT 57.768 42.857 15.93 0.00 0.00 1.28
7427 10504 2.923655 CAACAGAGACAACACGCGATAT 59.076 45.455 15.93 0.00 0.00 1.63
7434 10511 1.668419 AGCACCAACAGAGACAACAC 58.332 50.000 0.00 0.00 0.00 3.32
7445 10522 1.001406 AGACTCAGCAGTAGCACCAAC 59.999 52.381 0.00 0.00 45.49 3.77
7446 10523 1.342074 AGACTCAGCAGTAGCACCAA 58.658 50.000 0.00 0.00 45.49 3.67
7448 10525 1.202359 GCTAGACTCAGCAGTAGCACC 60.202 57.143 0.00 0.00 45.49 5.01
7449 10526 1.202359 GGCTAGACTCAGCAGTAGCAC 60.202 57.143 0.00 0.00 43.67 4.40
7450 10527 1.107114 GGCTAGACTCAGCAGTAGCA 58.893 55.000 0.00 0.00 43.67 3.49
7451 10528 1.066908 CTGGCTAGACTCAGCAGTAGC 59.933 57.143 0.00 0.00 43.67 3.58
7452 10529 2.098934 CACTGGCTAGACTCAGCAGTAG 59.901 54.545 3.17 0.00 43.67 2.57
7453 10530 2.095461 CACTGGCTAGACTCAGCAGTA 58.905 52.381 3.17 0.00 43.67 2.74
7454 10531 0.894141 CACTGGCTAGACTCAGCAGT 59.106 55.000 3.17 0.00 43.67 4.40
7455 10532 0.175302 CCACTGGCTAGACTCAGCAG 59.825 60.000 3.17 0.00 43.67 4.24
7456 10533 0.542938 ACCACTGGCTAGACTCAGCA 60.543 55.000 3.17 0.00 43.67 4.41
7457 10534 0.174617 GACCACTGGCTAGACTCAGC 59.825 60.000 3.17 0.00 41.02 4.26
7458 10535 1.748493 GAGACCACTGGCTAGACTCAG 59.252 57.143 3.17 1.92 37.07 3.35
7459 10536 1.356059 AGAGACCACTGGCTAGACTCA 59.644 52.381 3.17 0.00 0.00 3.41
7460 10537 2.137810 AGAGACCACTGGCTAGACTC 57.862 55.000 3.17 7.10 0.00 3.36
7461 10538 2.614134 AAGAGACCACTGGCTAGACT 57.386 50.000 3.17 0.00 0.00 3.24
7462 10539 2.829120 AGAAAGAGACCACTGGCTAGAC 59.171 50.000 3.17 0.00 0.00 2.59
7463 10540 2.828520 CAGAAAGAGACCACTGGCTAGA 59.171 50.000 3.17 0.00 0.00 2.43
7464 10541 2.093764 CCAGAAAGAGACCACTGGCTAG 60.094 54.545 0.00 0.00 42.30 3.42
7469 10548 3.475566 TGAACCAGAAAGAGACCACTG 57.524 47.619 0.00 0.00 0.00 3.66
7472 10551 5.532406 CAGATTTTGAACCAGAAAGAGACCA 59.468 40.000 0.00 0.00 0.00 4.02
7519 10598 4.760047 GGTGATGACCTGGCGCGT 62.760 66.667 8.43 0.00 39.47 6.01
7575 10654 2.923426 GAAGACGATGATGGGGCGCA 62.923 60.000 10.83 6.74 0.00 6.09
7610 10691 4.515361 AGAGCTTCTTGATCTGATGGTTG 58.485 43.478 0.00 0.00 40.31 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.