Multiple sequence alignment - TraesCS5D01G431900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G431900 chr5D 100.000 8325 0 0 1 8325 488347222 488355546 0.000000e+00 15374.0
1 TraesCS5D01G431900 chr5D 90.657 289 16 6 1 288 537938997 537938719 2.840000e-99 374.0
2 TraesCS5D01G431900 chr5D 98.000 50 1 0 1578 1627 488348750 488348799 4.140000e-13 87.9
3 TraesCS5D01G431900 chr5D 98.000 50 1 0 1529 1578 488348799 488348848 4.140000e-13 87.9
4 TraesCS5D01G431900 chr5D 100.000 44 0 0 7648 7691 38197381 38197338 1.930000e-11 82.4
5 TraesCS5D01G431900 chr5A 93.676 3558 173 33 1577 5099 609204960 609208500 0.000000e+00 5276.0
6 TraesCS5D01G431900 chr5A 91.477 2417 98 14 5274 7628 609208480 609210850 0.000000e+00 3223.0
7 TraesCS5D01G431900 chr5A 93.818 1375 55 11 5793 7140 609229015 609230386 0.000000e+00 2041.0
8 TraesCS5D01G431900 chr5A 86.494 770 41 25 854 1578 609204259 609205010 0.000000e+00 787.0
9 TraesCS5D01G431900 chr5A 95.533 403 16 2 5274 5674 609228607 609229009 1.960000e-180 643.0
10 TraesCS5D01G431900 chr5A 92.105 456 31 1 7143 7598 609239691 609240141 9.110000e-179 638.0
11 TraesCS5D01G431900 chr5A 92.366 393 23 5 4713 5099 609228236 609228627 3.400000e-153 553.0
12 TraesCS5D01G431900 chr5A 83.307 623 37 32 287 857 609203607 609204214 5.760000e-141 512.0
13 TraesCS5D01G431900 chr5A 95.858 169 6 1 7648 7816 609210929 609211096 1.060000e-68 272.0
14 TraesCS5D01G431900 chr5A 83.784 259 22 15 8075 8325 609240527 609240773 2.340000e-55 228.0
15 TraesCS5D01G431900 chr5A 86.486 185 13 5 7945 8125 609211158 609211334 8.530000e-45 193.0
16 TraesCS5D01G431900 chr5A 88.525 122 3 4 8108 8229 609211345 609211455 4.050000e-28 137.0
17 TraesCS5D01G431900 chr5A 97.059 68 0 2 8258 8325 609211457 609211522 6.830000e-21 113.0
18 TraesCS5D01G431900 chr5A 91.026 78 5 2 7832 7907 609211085 609211162 4.110000e-18 104.0
19 TraesCS5D01G431900 chr5B 95.142 2388 75 10 5274 7628 601334593 601336972 0.000000e+00 3729.0
20 TraesCS5D01G431900 chr5B 96.654 2092 48 14 3023 5099 601332529 601334613 0.000000e+00 3456.0
21 TraesCS5D01G431900 chr5B 95.710 1282 52 3 1578 2857 601331202 601332482 0.000000e+00 2060.0
22 TraesCS5D01G431900 chr5B 89.774 753 36 15 854 1578 601330512 601331251 0.000000e+00 926.0
23 TraesCS5D01G431900 chr5B 84.807 803 40 30 3 747 601329541 601330319 0.000000e+00 732.0
24 TraesCS5D01G431900 chr5B 86.623 613 58 12 7006 7617 601339239 601339828 0.000000e+00 656.0
25 TraesCS5D01G431900 chr5B 90.441 272 13 5 8059 8323 601337338 601337603 6.190000e-91 346.0
26 TraesCS5D01G431900 chr5B 88.930 271 16 2 7703 7973 601337071 601337327 1.040000e-83 322.0
27 TraesCS5D01G431900 chr5B 90.654 214 5 6 8117 8325 601344235 601344438 3.830000e-68 270.0
28 TraesCS5D01G431900 chr5B 96.970 33 1 0 2923 2955 601332496 601332528 1.000000e-03 56.5
29 TraesCS5D01G431900 chr4D 89.965 289 18 6 1 288 153051867 153051589 6.140000e-96 363.0
30 TraesCS5D01G431900 chr4D 90.678 236 14 3 405 639 153051472 153051244 2.920000e-79 307.0
31 TraesCS5D01G431900 chr4D 100.000 44 0 0 7648 7691 123320960 123321003 1.930000e-11 82.4
32 TraesCS5D01G431900 chr4D 100.000 44 0 0 7648 7691 407656296 407656253 1.930000e-11 82.4
33 TraesCS5D01G431900 chr2D 89.965 289 18 6 1 288 42604235 42603957 6.140000e-96 363.0
34 TraesCS5D01G431900 chr2D 89.965 289 18 6 1 288 200394069 200393791 6.140000e-96 363.0
35 TraesCS5D01G431900 chr2D 91.703 229 12 4 412 639 200393668 200393446 2.260000e-80 311.0
36 TraesCS5D01G431900 chr1D 89.619 289 19 6 1 288 239785080 239784802 2.860000e-94 357.0
37 TraesCS5D01G431900 chr1D 93.013 229 9 2 412 639 239784678 239784456 2.240000e-85 327.0
38 TraesCS5D01G431900 chr1D 92.661 218 15 1 5092 5309 314506183 314506399 6.270000e-81 313.0
39 TraesCS5D01G431900 chr1B 89.236 288 21 5 1 287 632856659 632856937 1.330000e-92 351.0
40 TraesCS5D01G431900 chr7A 91.903 247 16 4 42 288 151359857 151359615 8.000000e-90 342.0
41 TraesCS5D01G431900 chr7A 91.498 247 17 4 42 288 578331498 578331740 3.720000e-88 337.0
42 TraesCS5D01G431900 chr7A 93.088 217 10 5 5099 5310 723355857 723356073 6.270000e-81 313.0
43 TraesCS5D01G431900 chr6A 94.712 208 9 2 5082 5288 7988661 7988455 1.040000e-83 322.0
44 TraesCS5D01G431900 chr2A 94.686 207 9 2 5085 5290 196517951 196518156 3.750000e-83 320.0
45 TraesCS5D01G431900 chr3A 95.074 203 7 3 5092 5292 323103966 323103765 4.850000e-82 316.0
46 TraesCS5D01G431900 chr3A 90.830 229 14 4 412 639 611009599 611009377 4.880000e-77 300.0
47 TraesCS5D01G431900 chr1A 93.839 211 7 5 5083 5289 271887414 271887622 6.270000e-81 313.0
48 TraesCS5D01G431900 chr1A 95.000 200 8 2 5094 5291 309178422 309178223 6.270000e-81 313.0
49 TraesCS5D01G431900 chr4A 94.554 202 9 2 5087 5288 124610212 124610411 2.260000e-80 311.0
50 TraesCS5D01G431900 chr6D 93.720 207 11 2 5101 5307 470110491 470110695 8.120000e-80 309.0
51 TraesCS5D01G431900 chr2B 91.026 234 13 5 405 637 346735840 346735614 8.120000e-80 309.0
52 TraesCS5D01G431900 chr2B 97.917 48 1 0 7644 7691 112826512 112826559 5.350000e-12 84.2
53 TraesCS5D01G431900 chr7B 91.266 229 13 4 412 639 625272312 625272090 1.050000e-78 305.0
54 TraesCS5D01G431900 chr3B 91.266 229 13 4 412 639 62349694 62349472 1.050000e-78 305.0
55 TraesCS5D01G431900 chrUn 100.000 44 0 0 7648 7691 86516615 86516658 1.930000e-11 82.4
56 TraesCS5D01G431900 chrUn 100.000 44 0 0 7648 7691 206784133 206784176 1.930000e-11 82.4
57 TraesCS5D01G431900 chrUn 100.000 44 0 0 7648 7691 345389165 345389122 1.930000e-11 82.4
58 TraesCS5D01G431900 chr3D 100.000 44 0 0 7648 7691 213395619 213395662 1.930000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G431900 chr5D 488347222 488355546 8324 False 15374.000000 15374 100.000000 1 8325 1 chr5D.!!$F1 8324
1 TraesCS5D01G431900 chr5A 609203607 609211522 7915 False 1179.666667 5276 90.434222 287 8325 9 chr5A.!!$F1 8038
2 TraesCS5D01G431900 chr5A 609228236 609230386 2150 False 1079.000000 2041 93.905667 4713 7140 3 chr5A.!!$F2 2427
3 TraesCS5D01G431900 chr5A 609239691 609240773 1082 False 433.000000 638 87.944500 7143 8325 2 chr5A.!!$F3 1182
4 TraesCS5D01G431900 chr5B 601329541 601339828 10287 False 1364.833333 3729 91.672333 3 8323 9 chr5B.!!$F2 8320
5 TraesCS5D01G431900 chr4D 153051244 153051867 623 True 335.000000 363 90.321500 1 639 2 chr4D.!!$R2 638
6 TraesCS5D01G431900 chr2D 200393446 200394069 623 True 337.000000 363 90.834000 1 639 2 chr2D.!!$R2 638
7 TraesCS5D01G431900 chr1D 239784456 239785080 624 True 342.000000 357 91.316000 1 639 2 chr1D.!!$R1 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
713 809 0.035458 AGTTCGAGAGCTTGGGTTGG 59.965 55.000 0.00 0.00 0.00 3.77 F
769 908 0.095762 GGTGGTTGTATACGCGTTGC 59.904 55.000 20.78 9.82 0.00 4.17 F
779 918 0.249114 TACGCGTTGCTGTGTGAAGA 60.249 50.000 20.78 0.00 33.91 2.87 F
1568 1823 0.305922 GATGCGAGCTGCCACATAAC 59.694 55.000 0.00 0.00 45.60 1.89 F
1602 1857 0.386838 GTATTGGCTGCCCTTGATGC 59.613 55.000 17.53 5.13 0.00 3.91 F
2552 2813 1.139853 GCTGGACAGGGAAGGATGTAG 59.860 57.143 1.01 0.00 0.00 2.74 F
3355 3623 1.356059 TCTGGCTACTCTCAGACCTGT 59.644 52.381 0.00 0.00 35.37 4.00 F
5085 5378 0.234625 CGCGCAACACTAAGCAGAAA 59.765 50.000 8.75 0.00 0.00 2.52 F
5118 5411 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06 F
5119 5412 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90 F
6693 7029 1.016130 AAGCACAGATCTGAACGGCG 61.016 55.000 29.27 4.80 0.00 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1549 1804 0.305922 GTTATGTGGCAGCTCGCATC 59.694 55.000 11.75 1.23 45.17 3.91 R
2704 2965 0.321034 AATGAACTCTGCTGCAGCGA 60.321 50.000 32.11 27.80 45.83 4.93 R
2860 3121 4.623595 ACTAAAAAGTTGTGCCAAAACACG 59.376 37.500 0.00 0.00 43.74 4.49 R
3448 3716 1.074405 AGCAGATGAAAGTTCAGGGCA 59.926 47.619 13.43 0.00 41.08 5.36 R
3784 4053 6.622549 ACCTATGAAGTAAACACGAGAGAAG 58.377 40.000 0.00 0.00 0.00 2.85 R
4182 4453 0.734309 TGCATTGGACGTGCATGATC 59.266 50.000 11.62 6.45 46.76 2.92 R
5096 5389 0.328258 GTGCCCTAGACACACCCATT 59.672 55.000 10.07 0.00 37.96 3.16 R
6663 6999 0.397941 TCTGTGCTTCCTGGACTTGG 59.602 55.000 0.00 0.00 37.91 3.61 R
6693 7029 0.603569 TCCAGACTCCAGACTTTCGC 59.396 55.000 0.00 0.00 0.00 4.70 R
6827 7190 0.744414 CCCGATGATTTGTCCGCAGT 60.744 55.000 0.00 0.00 0.00 4.40 R
8206 8798 0.108945 CCCCGTCCTCTCAAACGTAC 60.109 60.000 0.00 0.00 37.19 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 49 1.536766 GCAACAAGCATAGCACACAGA 59.463 47.619 0.00 0.00 44.79 3.41
42 50 2.666619 GCAACAAGCATAGCACACAGAC 60.667 50.000 0.00 0.00 44.79 3.51
43 51 2.549064 ACAAGCATAGCACACAGACA 57.451 45.000 0.00 0.00 0.00 3.41
44 52 2.146342 ACAAGCATAGCACACAGACAC 58.854 47.619 0.00 0.00 0.00 3.67
45 53 2.145536 CAAGCATAGCACACAGACACA 58.854 47.619 0.00 0.00 0.00 3.72
46 54 2.090400 AGCATAGCACACAGACACAG 57.910 50.000 0.00 0.00 0.00 3.66
86 94 1.743394 GATCCCGATGAAACACCCAAC 59.257 52.381 0.00 0.00 0.00 3.77
96 104 1.256812 AACACCCAACTATTGCTGCC 58.743 50.000 0.00 0.00 0.00 4.85
102 110 2.422519 CCCAACTATTGCTGCCTGATCT 60.423 50.000 0.00 0.00 0.00 2.75
105 113 3.399440 ACTATTGCTGCCTGATCTAGC 57.601 47.619 0.00 0.00 37.93 3.42
129 137 4.566759 TCGGAATTCGACAGATCATTTCAC 59.433 41.667 0.00 0.00 43.74 3.18
161 169 4.020485 TCCTAGCCTCAAACTAAAGTGGAC 60.020 45.833 0.00 0.00 0.00 4.02
189 197 1.646912 TTACCTTCCCACGTGGATGA 58.353 50.000 36.07 22.13 44.66 2.92
221 229 5.574891 ATGCAGCGTATACCAATCAAAAA 57.425 34.783 0.00 0.00 0.00 1.94
249 257 3.945285 TCAAAACAGAACTCACCAACTCC 59.055 43.478 0.00 0.00 0.00 3.85
258 266 0.768622 TCACCAACTCCATCCGGTTT 59.231 50.000 0.00 0.00 0.00 3.27
284 292 1.904287 TTTGAGGTCATTTCACCCCG 58.096 50.000 0.00 0.00 37.09 5.73
312 351 4.095036 GTCCTCGGAATCACCAGAAATTTC 59.905 45.833 10.33 10.33 38.90 2.17
711 807 0.038159 CGAGTTCGAGAGCTTGGGTT 60.038 55.000 0.00 0.00 43.02 4.11
712 808 1.433534 GAGTTCGAGAGCTTGGGTTG 58.566 55.000 0.00 0.00 0.00 3.77
713 809 0.035458 AGTTCGAGAGCTTGGGTTGG 59.965 55.000 0.00 0.00 0.00 3.77
714 810 0.955919 GTTCGAGAGCTTGGGTTGGG 60.956 60.000 0.00 0.00 0.00 4.12
715 811 2.747855 CGAGAGCTTGGGTTGGGC 60.748 66.667 0.00 0.00 0.00 5.36
769 908 0.095762 GGTGGTTGTATACGCGTTGC 59.904 55.000 20.78 9.82 0.00 4.17
774 913 1.458064 GTTGTATACGCGTTGCTGTGT 59.542 47.619 20.78 0.00 36.40 3.72
775 914 1.064582 TGTATACGCGTTGCTGTGTG 58.935 50.000 20.78 0.00 33.91 3.82
776 915 1.336056 TGTATACGCGTTGCTGTGTGA 60.336 47.619 20.78 0.00 33.91 3.58
777 916 1.722464 GTATACGCGTTGCTGTGTGAA 59.278 47.619 20.78 0.00 33.91 3.18
778 917 0.790207 ATACGCGTTGCTGTGTGAAG 59.210 50.000 20.78 0.00 33.91 3.02
779 918 0.249114 TACGCGTTGCTGTGTGAAGA 60.249 50.000 20.78 0.00 33.91 2.87
780 919 1.083401 CGCGTTGCTGTGTGAAGAC 60.083 57.895 0.00 0.00 0.00 3.01
901 1094 7.539034 TTTTTGGGCTTCTAGCTTAATTTCT 57.461 32.000 0.00 0.00 41.99 2.52
902 1095 7.539034 TTTTGGGCTTCTAGCTTAATTTCTT 57.461 32.000 0.00 0.00 41.99 2.52
903 1096 6.759497 TTGGGCTTCTAGCTTAATTTCTTC 57.241 37.500 0.00 0.00 41.99 2.87
927 1139 2.642807 TCTAAGTTAAGCTGGGCCTTGT 59.357 45.455 4.53 0.00 0.00 3.16
953 1167 7.042335 TCGATAGAGAAAGCCCTAAAGAAAAG 58.958 38.462 0.00 0.00 42.67 2.27
956 1170 2.820197 AGAAAGCCCTAAAGAAAAGCCG 59.180 45.455 0.00 0.00 0.00 5.52
1077 1291 4.129737 CGGAAGAAGGAGCGCCGA 62.130 66.667 2.29 0.00 44.43 5.54
1253 1467 4.760047 GCTTGAGAAGGCCGCCGA 62.760 66.667 3.05 0.00 0.00 5.54
1359 1582 1.198759 TCTCACTTACCCCAGTGCCC 61.199 60.000 0.00 0.00 43.51 5.36
1378 1605 1.202806 CCTGGCTCCTTCAACTGAACA 60.203 52.381 0.00 0.00 0.00 3.18
1379 1606 2.553904 CCTGGCTCCTTCAACTGAACAT 60.554 50.000 0.00 0.00 0.00 2.71
1380 1607 3.307691 CCTGGCTCCTTCAACTGAACATA 60.308 47.826 0.00 0.00 0.00 2.29
1381 1608 3.937706 CTGGCTCCTTCAACTGAACATAG 59.062 47.826 0.00 0.00 0.00 2.23
1382 1609 3.582647 TGGCTCCTTCAACTGAACATAGA 59.417 43.478 0.00 0.00 0.00 1.98
1383 1610 4.187694 GGCTCCTTCAACTGAACATAGAG 58.812 47.826 0.00 0.00 0.00 2.43
1384 1611 4.323104 GGCTCCTTCAACTGAACATAGAGT 60.323 45.833 0.00 0.00 0.00 3.24
1388 1615 7.255277 GCTCCTTCAACTGAACATAGAGTTTTT 60.255 37.037 0.00 0.00 41.51 1.94
1449 1701 1.541588 GAACCTGCACACCTGATTTCC 59.458 52.381 0.00 0.00 0.00 3.13
1454 1709 4.019174 CCTGCACACCTGATTTCCTAATT 58.981 43.478 0.00 0.00 0.00 1.40
1529 1784 4.256920 GACATGAACAGCACTTGTAGGAT 58.743 43.478 0.00 0.00 39.73 3.24
1530 1785 4.005650 ACATGAACAGCACTTGTAGGATG 58.994 43.478 0.00 0.00 39.73 3.51
1531 1786 3.769739 TGAACAGCACTTGTAGGATGT 57.230 42.857 0.00 0.00 39.73 3.06
1532 1787 4.085357 TGAACAGCACTTGTAGGATGTT 57.915 40.909 0.00 0.00 39.73 2.71
1533 1788 3.814842 TGAACAGCACTTGTAGGATGTTG 59.185 43.478 0.00 0.00 39.73 3.33
1534 1789 2.783135 ACAGCACTTGTAGGATGTTGG 58.217 47.619 0.00 0.00 38.56 3.77
1535 1790 2.106511 ACAGCACTTGTAGGATGTTGGT 59.893 45.455 0.00 0.00 38.56 3.67
1536 1791 3.326588 ACAGCACTTGTAGGATGTTGGTA 59.673 43.478 0.00 0.00 38.56 3.25
1537 1792 4.019321 ACAGCACTTGTAGGATGTTGGTAT 60.019 41.667 0.00 0.00 38.56 2.73
1538 1793 4.943705 CAGCACTTGTAGGATGTTGGTATT 59.056 41.667 0.00 0.00 0.00 1.89
1539 1794 4.943705 AGCACTTGTAGGATGTTGGTATTG 59.056 41.667 0.00 0.00 0.00 1.90
1540 1795 4.096382 GCACTTGTAGGATGTTGGTATTGG 59.904 45.833 0.00 0.00 0.00 3.16
1541 1796 4.096382 CACTTGTAGGATGTTGGTATTGGC 59.904 45.833 0.00 0.00 0.00 4.52
1542 1797 4.018415 ACTTGTAGGATGTTGGTATTGGCT 60.018 41.667 0.00 0.00 0.00 4.75
1543 1798 3.884895 TGTAGGATGTTGGTATTGGCTG 58.115 45.455 0.00 0.00 0.00 4.85
1544 1799 1.767759 AGGATGTTGGTATTGGCTGC 58.232 50.000 0.00 0.00 0.00 5.25
1545 1800 0.746659 GGATGTTGGTATTGGCTGCC 59.253 55.000 12.87 12.87 0.00 4.85
1546 1801 0.746659 GATGTTGGTATTGGCTGCCC 59.253 55.000 17.53 0.00 0.00 5.36
1547 1802 0.336048 ATGTTGGTATTGGCTGCCCT 59.664 50.000 17.53 6.14 0.00 5.19
1548 1803 0.323360 TGTTGGTATTGGCTGCCCTC 60.323 55.000 17.53 3.68 0.00 4.30
1549 1804 1.077787 TTGGTATTGGCTGCCCTCG 60.078 57.895 17.53 0.00 0.00 4.63
1550 1805 1.558167 TTGGTATTGGCTGCCCTCGA 61.558 55.000 17.53 0.00 0.00 4.04
1551 1806 1.344953 TGGTATTGGCTGCCCTCGAT 61.345 55.000 17.53 7.62 0.00 3.59
1552 1807 0.886490 GGTATTGGCTGCCCTCGATG 60.886 60.000 17.53 0.00 0.00 3.84
1553 1808 1.227943 TATTGGCTGCCCTCGATGC 60.228 57.895 17.53 0.38 0.00 3.91
1554 1809 2.994387 TATTGGCTGCCCTCGATGCG 62.994 60.000 17.53 0.00 0.00 4.73
1563 1818 3.260483 CTCGATGCGAGCTGCCAC 61.260 66.667 3.76 0.00 46.75 5.01
1564 1819 3.995219 CTCGATGCGAGCTGCCACA 62.995 63.158 3.76 0.00 46.75 4.17
1565 1820 2.893895 CGATGCGAGCTGCCACAT 60.894 61.111 0.00 0.00 45.60 3.21
1566 1821 1.592400 CGATGCGAGCTGCCACATA 60.592 57.895 0.00 0.00 45.60 2.29
1567 1822 1.153597 CGATGCGAGCTGCCACATAA 61.154 55.000 0.00 0.00 45.60 1.90
1568 1823 0.305922 GATGCGAGCTGCCACATAAC 59.694 55.000 0.00 0.00 45.60 1.89
1569 1824 0.392863 ATGCGAGCTGCCACATAACA 60.393 50.000 0.00 0.00 45.60 2.41
1570 1825 0.605050 TGCGAGCTGCCACATAACAA 60.605 50.000 0.00 0.00 45.60 2.83
1571 1826 0.734889 GCGAGCTGCCACATAACAAT 59.265 50.000 0.00 0.00 37.76 2.71
1572 1827 1.939934 GCGAGCTGCCACATAACAATA 59.060 47.619 0.00 0.00 37.76 1.90
1573 1828 2.032549 GCGAGCTGCCACATAACAATAG 60.033 50.000 0.00 0.00 37.76 1.73
1574 1829 2.032549 CGAGCTGCCACATAACAATAGC 60.033 50.000 0.00 0.00 0.00 2.97
1575 1830 2.945008 GAGCTGCCACATAACAATAGCA 59.055 45.455 0.00 0.00 32.42 3.49
1576 1831 3.559069 AGCTGCCACATAACAATAGCAT 58.441 40.909 0.00 0.00 32.42 3.79
1577 1832 4.717877 AGCTGCCACATAACAATAGCATA 58.282 39.130 0.00 0.00 32.42 3.14
1595 1850 2.065899 TATGTTGGTATTGGCTGCCC 57.934 50.000 17.53 0.00 0.00 5.36
1602 1857 0.386838 GTATTGGCTGCCCTTGATGC 59.613 55.000 17.53 5.13 0.00 3.91
1605 1860 3.207669 GGCTGCCCTTGATGCGAG 61.208 66.667 7.66 0.00 0.00 5.03
1609 1864 3.885521 GCCCTTGATGCGAGCTGC 61.886 66.667 0.00 0.00 46.70 5.25
1659 1914 3.679389 ACCAGTGTTGTTGGAGATGATC 58.321 45.455 0.00 0.00 39.08 2.92
1666 1921 5.760253 GTGTTGTTGGAGATGATCGGAATAT 59.240 40.000 0.00 0.00 0.00 1.28
1699 1954 8.688747 AATAAGAAGCCAAAGAGGATAATCAG 57.311 34.615 0.00 0.00 41.22 2.90
1700 1955 5.046288 AGAAGCCAAAGAGGATAATCAGG 57.954 43.478 0.00 0.00 41.22 3.86
1702 1957 5.192522 AGAAGCCAAAGAGGATAATCAGGAA 59.807 40.000 0.00 0.00 41.22 3.36
1706 1961 5.298026 GCCAAAGAGGATAATCAGGAAGAAC 59.702 44.000 0.00 0.00 41.22 3.01
1728 1986 4.584743 ACAAGAAGAAGCAAAGTTTAGGGG 59.415 41.667 0.00 0.00 0.00 4.79
1729 1988 3.767711 AGAAGAAGCAAAGTTTAGGGGG 58.232 45.455 0.00 0.00 0.00 5.40
1842 2101 3.181494 GCTTATGCATGATGCTGTTCACA 60.181 43.478 19.19 0.00 45.31 3.58
1894 2154 2.158449 GCTCATTGTTCAAGGACACTCG 59.842 50.000 0.00 0.00 0.00 4.18
1895 2155 2.738846 CTCATTGTTCAAGGACACTCGG 59.261 50.000 0.00 0.00 0.00 4.63
1930 2190 3.999001 GCACATGACTTCACAGATTCTGA 59.001 43.478 20.33 0.00 35.18 3.27
1931 2191 4.634883 GCACATGACTTCACAGATTCTGAT 59.365 41.667 20.33 2.07 35.18 2.90
1940 2200 6.718454 ACTTCACAGATTCTGATTGTCCATTT 59.282 34.615 20.33 0.00 35.18 2.32
2043 2304 6.542852 TCATCGAAAATGTTTTACTAGCTGC 58.457 36.000 0.00 0.00 0.00 5.25
2056 2317 3.754965 ACTAGCTGCTGGAATGTTTGAA 58.245 40.909 20.35 0.00 0.00 2.69
2200 2461 3.499918 CGGAGATCATATGGCAAGGAAAC 59.500 47.826 2.13 0.00 0.00 2.78
2279 2540 4.688413 CACTAAGTCAAGAGGTCAAGCTTC 59.312 45.833 0.00 0.00 0.00 3.86
2293 2554 6.321181 AGGTCAAGCTTCTGTTTGTGATAAAA 59.679 34.615 0.00 0.00 36.11 1.52
2552 2813 1.139853 GCTGGACAGGGAAGGATGTAG 59.860 57.143 1.01 0.00 0.00 2.74
2625 2886 7.765360 ACATTTTCCTATATTTGCACCAATGTG 59.235 33.333 0.00 0.00 45.65 3.21
2704 2965 3.042560 GCTTGCCGCTTTGGAGTT 58.957 55.556 0.00 0.00 42.00 3.01
2860 3121 7.881775 ACAAATTGGTATCCTGAACTATTCC 57.118 36.000 0.00 0.00 0.00 3.01
2894 3155 7.200455 GCACAACTTTTTAGTATTGTTCACCT 58.800 34.615 0.00 0.00 33.05 4.00
2913 3174 4.339247 CACCTTCACTTTCATGGACAGTTT 59.661 41.667 0.00 0.00 0.00 2.66
2914 3175 5.530915 CACCTTCACTTTCATGGACAGTTTA 59.469 40.000 0.00 0.00 0.00 2.01
2915 3176 6.207417 CACCTTCACTTTCATGGACAGTTTAT 59.793 38.462 0.00 0.00 0.00 1.40
2916 3177 7.390440 CACCTTCACTTTCATGGACAGTTTATA 59.610 37.037 0.00 0.00 0.00 0.98
2917 3178 7.390718 ACCTTCACTTTCATGGACAGTTTATAC 59.609 37.037 0.00 0.00 0.00 1.47
2918 3179 7.607991 CCTTCACTTTCATGGACAGTTTATACT 59.392 37.037 0.00 0.00 34.00 2.12
2919 3180 8.547967 TTCACTTTCATGGACAGTTTATACTC 57.452 34.615 0.00 0.00 30.26 2.59
2920 3181 7.676004 TCACTTTCATGGACAGTTTATACTCA 58.324 34.615 0.00 0.00 30.26 3.41
2921 3182 7.602644 TCACTTTCATGGACAGTTTATACTCAC 59.397 37.037 0.00 0.00 30.26 3.51
2922 3183 7.604164 CACTTTCATGGACAGTTTATACTCACT 59.396 37.037 0.00 0.00 30.26 3.41
2923 3184 8.812972 ACTTTCATGGACAGTTTATACTCACTA 58.187 33.333 0.00 0.00 30.26 2.74
2924 3185 8.997621 TTTCATGGACAGTTTATACTCACTAC 57.002 34.615 0.00 0.00 30.26 2.73
2987 3249 2.453521 CCCCCTTTAGGTTTGTTAGGC 58.546 52.381 0.00 0.00 0.00 3.93
2988 3250 2.042569 CCCCCTTTAGGTTTGTTAGGCT 59.957 50.000 0.00 0.00 0.00 4.58
2996 3258 3.944087 AGGTTTGTTAGGCTCATCTCAC 58.056 45.455 0.00 0.00 0.00 3.51
3355 3623 1.356059 TCTGGCTACTCTCAGACCTGT 59.644 52.381 0.00 0.00 35.37 4.00
3448 3716 6.295462 CCAGTTGGTTTCATTTGATTGGAGAT 60.295 38.462 0.00 0.00 0.00 2.75
3784 4053 7.454260 AATTATCTGTTTCTCCCTTTGTGTC 57.546 36.000 0.00 0.00 0.00 3.67
4075 4345 4.237018 TCACTAACTTTCCAGGGTTAGGT 58.763 43.478 15.02 0.60 45.15 3.08
4158 4429 8.082242 GCCTAATTCAAGAATGTTTGTGTTACT 58.918 33.333 0.00 0.00 0.00 2.24
4182 4453 5.120053 TGTGATGTGTTTGCTACAACTATCG 59.880 40.000 0.00 0.00 38.80 2.92
4262 4533 7.717436 TGAAGTGTACTAACATTGTGGAAATCA 59.283 33.333 0.00 0.00 38.08 2.57
4332 4604 7.505585 TCTCCAGTAAACCACTCAAATGAAAAT 59.494 33.333 0.00 0.00 34.26 1.82
4543 4815 7.920682 ACAAACAGTTTCACCTTAATTCATGTC 59.079 33.333 0.00 0.00 0.00 3.06
4774 5061 5.590259 AGCTTGTTCACTGTAGTTGTTCATT 59.410 36.000 0.00 0.00 0.00 2.57
5018 5311 9.884465 GCTTGAATTAGTACACATATTTGATCC 57.116 33.333 0.00 0.00 0.00 3.36
5038 5331 3.004944 TCCGAAATGGTTACCAAAAGTGC 59.995 43.478 8.63 0.00 36.95 4.40
5080 5373 1.154225 ATTGCGCGCAACACTAAGC 60.154 52.632 44.93 7.37 38.88 3.09
5083 5376 2.667318 GCGCGCAACACTAAGCAGA 61.667 57.895 29.10 0.00 0.00 4.26
5085 5378 0.234625 CGCGCAACACTAAGCAGAAA 59.765 50.000 8.75 0.00 0.00 2.52
5086 5379 1.135972 CGCGCAACACTAAGCAGAAAT 60.136 47.619 8.75 0.00 0.00 2.17
5087 5380 2.509870 GCGCAACACTAAGCAGAAATC 58.490 47.619 0.30 0.00 0.00 2.17
5088 5381 2.160417 GCGCAACACTAAGCAGAAATCT 59.840 45.455 0.30 0.00 0.00 2.40
5089 5382 3.370978 GCGCAACACTAAGCAGAAATCTA 59.629 43.478 0.30 0.00 0.00 1.98
5090 5383 4.034510 GCGCAACACTAAGCAGAAATCTAT 59.965 41.667 0.30 0.00 0.00 1.98
5091 5384 5.234329 GCGCAACACTAAGCAGAAATCTATA 59.766 40.000 0.30 0.00 0.00 1.31
5092 5385 6.073548 GCGCAACACTAAGCAGAAATCTATAT 60.074 38.462 0.30 0.00 0.00 0.86
5093 5386 7.519008 GCGCAACACTAAGCAGAAATCTATATT 60.519 37.037 0.30 0.00 0.00 1.28
5094 5387 8.338259 CGCAACACTAAGCAGAAATCTATATTT 58.662 33.333 0.00 0.00 38.03 1.40
5104 5397 9.646522 AGCAGAAATCTATATTTAAATGGGTGT 57.353 29.630 11.05 0.00 35.41 4.16
5105 5398 9.683069 GCAGAAATCTATATTTAAATGGGTGTG 57.317 33.333 11.05 0.31 35.41 3.82
5112 5405 8.656806 TCTATATTTAAATGGGTGTGTCTAGGG 58.343 37.037 11.05 0.00 0.00 3.53
5113 5406 3.359695 TTAAATGGGTGTGTCTAGGGC 57.640 47.619 0.00 0.00 0.00 5.19
5114 5407 1.072266 AAATGGGTGTGTCTAGGGCA 58.928 50.000 0.00 0.00 0.00 5.36
5115 5408 0.328258 AATGGGTGTGTCTAGGGCAC 59.672 55.000 10.20 10.20 37.37 5.01
5116 5409 0.840288 ATGGGTGTGTCTAGGGCACA 60.840 55.000 14.22 14.22 43.60 4.57
5117 5410 0.840288 TGGGTGTGTCTAGGGCACAT 60.840 55.000 18.92 0.00 46.66 3.21
5118 5411 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
5119 5412 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
5120 5413 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
5121 5414 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
5122 5415 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
5123 5416 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
5124 5417 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
5140 5433 8.992835 CATCTAGATGTGCTATAGTTATTGCA 57.007 34.615 22.42 4.52 40.96 4.08
5150 5443 8.593492 TGCTATAGTTATTGCACATCTAAGTG 57.407 34.615 0.84 0.00 38.99 3.16
5151 5444 8.421002 TGCTATAGTTATTGCACATCTAAGTGA 58.579 33.333 0.84 0.00 42.05 3.41
5152 5445 8.920665 GCTATAGTTATTGCACATCTAAGTGAG 58.079 37.037 0.84 0.00 42.05 3.51
5153 5446 9.973450 CTATAGTTATTGCACATCTAAGTGAGT 57.027 33.333 0.00 0.00 42.05 3.41
5154 5447 6.974932 AGTTATTGCACATCTAAGTGAGTG 57.025 37.500 0.00 0.00 42.05 3.51
5155 5448 6.701340 AGTTATTGCACATCTAAGTGAGTGA 58.299 36.000 0.00 0.00 42.05 3.41
5156 5449 7.161404 AGTTATTGCACATCTAAGTGAGTGAA 58.839 34.615 0.00 0.00 42.05 3.18
5157 5450 7.826252 AGTTATTGCACATCTAAGTGAGTGAAT 59.174 33.333 0.00 0.00 42.05 2.57
5158 5451 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
5159 5452 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
5160 5453 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
5161 5454 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
5162 5455 5.447010 GCACATCTAAGTGAGTGAATCAAGC 60.447 44.000 0.00 0.00 42.05 4.01
5163 5456 5.640783 CACATCTAAGTGAGTGAATCAAGCA 59.359 40.000 0.00 0.00 42.05 3.91
5164 5457 6.315642 CACATCTAAGTGAGTGAATCAAGCAT 59.684 38.462 0.00 0.00 42.05 3.79
5165 5458 7.493645 CACATCTAAGTGAGTGAATCAAGCATA 59.506 37.037 0.00 0.00 42.05 3.14
5166 5459 7.710044 ACATCTAAGTGAGTGAATCAAGCATAG 59.290 37.037 0.00 0.00 40.43 2.23
5167 5460 7.410120 TCTAAGTGAGTGAATCAAGCATAGA 57.590 36.000 0.00 0.00 40.43 1.98
5168 5461 7.487484 TCTAAGTGAGTGAATCAAGCATAGAG 58.513 38.462 0.00 0.00 40.43 2.43
5169 5462 5.929058 AGTGAGTGAATCAAGCATAGAGA 57.071 39.130 0.00 0.00 40.43 3.10
5170 5463 5.904941 AGTGAGTGAATCAAGCATAGAGAG 58.095 41.667 0.00 0.00 40.43 3.20
5171 5464 4.507388 GTGAGTGAATCAAGCATAGAGAGC 59.493 45.833 0.00 0.00 40.43 4.09
5172 5465 4.161001 TGAGTGAATCAAGCATAGAGAGCA 59.839 41.667 0.00 0.00 34.02 4.26
5173 5466 5.095145 AGTGAATCAAGCATAGAGAGCAA 57.905 39.130 0.00 0.00 0.00 3.91
5174 5467 5.494724 AGTGAATCAAGCATAGAGAGCAAA 58.505 37.500 0.00 0.00 0.00 3.68
5175 5468 5.942236 AGTGAATCAAGCATAGAGAGCAAAA 59.058 36.000 0.00 0.00 0.00 2.44
5176 5469 6.093771 AGTGAATCAAGCATAGAGAGCAAAAG 59.906 38.462 0.00 0.00 0.00 2.27
5177 5470 6.093219 GTGAATCAAGCATAGAGAGCAAAAGA 59.907 38.462 0.00 0.00 0.00 2.52
5178 5471 6.656270 TGAATCAAGCATAGAGAGCAAAAGAA 59.344 34.615 0.00 0.00 0.00 2.52
5179 5472 7.175467 TGAATCAAGCATAGAGAGCAAAAGAAA 59.825 33.333 0.00 0.00 0.00 2.52
5180 5473 6.882610 TCAAGCATAGAGAGCAAAAGAAAA 57.117 33.333 0.00 0.00 0.00 2.29
5181 5474 7.275888 TCAAGCATAGAGAGCAAAAGAAAAA 57.724 32.000 0.00 0.00 0.00 1.94
5204 5497 9.810545 AAAAAGAAAAAGAAAATATCCACACGA 57.189 25.926 0.00 0.00 0.00 4.35
5205 5498 9.810545 AAAAGAAAAAGAAAATATCCACACGAA 57.189 25.926 0.00 0.00 0.00 3.85
5206 5499 9.981114 AAAGAAAAAGAAAATATCCACACGAAT 57.019 25.926 0.00 0.00 0.00 3.34
5207 5500 9.626045 AAGAAAAAGAAAATATCCACACGAATC 57.374 29.630 0.00 0.00 0.00 2.52
5208 5501 9.014297 AGAAAAAGAAAATATCCACACGAATCT 57.986 29.630 0.00 0.00 0.00 2.40
5209 5502 9.278734 GAAAAAGAAAATATCCACACGAATCTC 57.721 33.333 0.00 0.00 0.00 2.75
5210 5503 7.921786 AAAGAAAATATCCACACGAATCTCA 57.078 32.000 0.00 0.00 0.00 3.27
5211 5504 7.921786 AAGAAAATATCCACACGAATCTCAA 57.078 32.000 0.00 0.00 0.00 3.02
5212 5505 7.308782 AGAAAATATCCACACGAATCTCAAC 57.691 36.000 0.00 0.00 0.00 3.18
5213 5506 5.718649 AAATATCCACACGAATCTCAACG 57.281 39.130 0.00 0.00 0.00 4.10
5214 5507 2.743636 ATCCACACGAATCTCAACGT 57.256 45.000 0.00 0.00 43.50 3.99
5215 5508 3.861276 ATCCACACGAATCTCAACGTA 57.139 42.857 0.00 0.00 40.76 3.57
5216 5509 3.646611 TCCACACGAATCTCAACGTAA 57.353 42.857 0.00 0.00 40.76 3.18
5217 5510 3.571571 TCCACACGAATCTCAACGTAAG 58.428 45.455 0.00 0.00 40.76 2.34
5218 5511 3.253921 TCCACACGAATCTCAACGTAAGA 59.746 43.478 3.32 3.32 40.76 2.10
5219 5512 4.082408 TCCACACGAATCTCAACGTAAGAT 60.082 41.667 7.39 7.39 40.76 2.40
5220 5513 4.265556 CCACACGAATCTCAACGTAAGATC 59.734 45.833 12.34 6.90 40.76 2.75
5221 5514 4.857037 CACACGAATCTCAACGTAAGATCA 59.143 41.667 12.34 0.00 40.76 2.92
5222 5515 5.344933 CACACGAATCTCAACGTAAGATCAA 59.655 40.000 12.34 0.00 40.76 2.57
5223 5516 6.035005 CACACGAATCTCAACGTAAGATCAAT 59.965 38.462 12.34 0.02 40.76 2.57
5224 5517 6.035005 ACACGAATCTCAACGTAAGATCAATG 59.965 38.462 12.34 12.21 40.76 2.82
5225 5518 6.253512 CACGAATCTCAACGTAAGATCAATGA 59.746 38.462 12.34 0.00 40.76 2.57
5226 5519 6.253727 ACGAATCTCAACGTAAGATCAATGAC 59.746 38.462 12.34 2.89 40.92 3.06
5227 5520 6.253512 CGAATCTCAACGTAAGATCAATGACA 59.746 38.462 12.34 0.00 43.62 3.58
5228 5521 7.043125 CGAATCTCAACGTAAGATCAATGACAT 60.043 37.037 12.34 0.00 43.62 3.06
5229 5522 9.249457 GAATCTCAACGTAAGATCAATGACATA 57.751 33.333 12.34 0.00 43.62 2.29
5230 5523 8.809159 ATCTCAACGTAAGATCAATGACATAG 57.191 34.615 7.39 0.00 43.62 2.23
5231 5524 7.203218 TCTCAACGTAAGATCAATGACATAGG 58.797 38.462 0.00 0.00 43.62 2.57
5232 5525 7.068226 TCTCAACGTAAGATCAATGACATAGGA 59.932 37.037 0.00 0.00 43.62 2.94
5233 5526 6.978659 TCAACGTAAGATCAATGACATAGGAC 59.021 38.462 0.00 0.00 43.62 3.85
5234 5527 6.716934 ACGTAAGATCAATGACATAGGACT 57.283 37.500 0.00 0.00 43.62 3.85
5235 5528 7.113658 ACGTAAGATCAATGACATAGGACTT 57.886 36.000 0.00 0.00 43.62 3.01
5236 5529 8.234136 ACGTAAGATCAATGACATAGGACTTA 57.766 34.615 0.00 0.00 43.62 2.24
5237 5530 8.353684 ACGTAAGATCAATGACATAGGACTTAG 58.646 37.037 0.00 0.00 43.62 2.18
5238 5531 8.568794 CGTAAGATCAATGACATAGGACTTAGA 58.431 37.037 0.00 0.00 43.02 2.10
5241 5534 8.489676 AGATCAATGACATAGGACTTAGATGT 57.510 34.615 0.00 0.00 36.52 3.06
5242 5535 8.366401 AGATCAATGACATAGGACTTAGATGTG 58.634 37.037 0.00 0.00 33.99 3.21
5243 5536 6.283694 TCAATGACATAGGACTTAGATGTGC 58.716 40.000 0.00 0.00 33.99 4.57
5244 5537 5.876651 ATGACATAGGACTTAGATGTGCA 57.123 39.130 0.00 0.00 33.99 4.57
5245 5538 5.675684 TGACATAGGACTTAGATGTGCAA 57.324 39.130 0.00 0.00 33.99 4.08
5246 5539 6.239217 TGACATAGGACTTAGATGTGCAAT 57.761 37.500 0.00 0.00 33.99 3.56
5247 5540 7.360113 TGACATAGGACTTAGATGTGCAATA 57.640 36.000 0.00 0.00 33.99 1.90
5248 5541 7.210174 TGACATAGGACTTAGATGTGCAATAC 58.790 38.462 0.00 0.00 33.99 1.89
5249 5542 7.069950 TGACATAGGACTTAGATGTGCAATACT 59.930 37.037 0.00 0.00 33.99 2.12
5250 5543 7.796054 ACATAGGACTTAGATGTGCAATACTT 58.204 34.615 0.00 0.00 32.62 2.24
5251 5544 8.924303 ACATAGGACTTAGATGTGCAATACTTA 58.076 33.333 0.00 0.00 32.62 2.24
5252 5545 9.935241 CATAGGACTTAGATGTGCAATACTTAT 57.065 33.333 0.00 0.00 0.00 1.73
5253 5546 9.935241 ATAGGACTTAGATGTGCAATACTTATG 57.065 33.333 0.00 0.00 0.00 1.90
5254 5547 7.220030 AGGACTTAGATGTGCAATACTTATGG 58.780 38.462 0.00 0.00 0.00 2.74
5255 5548 6.073003 GGACTTAGATGTGCAATACTTATGGC 60.073 42.308 0.00 0.00 33.16 4.40
5256 5549 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
5701 6017 3.393800 ACTGTGAGTTATGTGAGCACAC 58.606 45.455 7.39 7.39 45.05 3.82
6104 6438 6.529125 CACATGGAGTTGCTTGTAATTTCATC 59.471 38.462 0.00 0.00 0.00 2.92
6216 6550 2.477104 TGGTCCCTCAGATGATGCTA 57.523 50.000 0.00 0.00 0.00 3.49
6281 6615 5.417580 ACACAGTTCAGATAGGAAGAGACTC 59.582 44.000 0.00 0.00 0.00 3.36
6693 7029 1.016130 AAGCACAGATCTGAACGGCG 61.016 55.000 29.27 4.80 0.00 6.46
6827 7190 2.038863 TCTTGAAAGGGGCTACTCCA 57.961 50.000 0.00 0.00 36.21 3.86
6904 7267 4.184629 ACGTTGAAGATGACTCTTATGGC 58.815 43.478 0.00 0.00 41.87 4.40
6912 7275 4.404073 AGATGACTCTTATGGCGAGAAAGT 59.596 41.667 0.00 0.00 32.87 2.66
7020 7383 3.054582 TCAGATGCAGAAGCTCAATTCCT 60.055 43.478 0.00 0.00 42.74 3.36
7217 7580 1.284111 TGGCCCCTCGGACTCTAGTA 61.284 60.000 0.00 0.00 38.45 1.82
7290 7653 2.435069 AGGAGGATCTCTCATTGCACAG 59.565 50.000 11.73 0.00 44.19 3.66
7382 7745 0.932399 CGACTTCGGTTTTTGGACGT 59.068 50.000 0.00 0.00 35.37 4.34
7455 7831 4.520492 CAGCCTTGCTTTCTTCTCCTTTTA 59.480 41.667 0.00 0.00 36.40 1.52
7597 7974 3.279434 GGAATTCCACCGACTTTATGCT 58.721 45.455 20.04 0.00 35.64 3.79
7598 7975 3.312697 GGAATTCCACCGACTTTATGCTC 59.687 47.826 20.04 0.00 35.64 4.26
7599 7976 3.627395 ATTCCACCGACTTTATGCTCA 57.373 42.857 0.00 0.00 0.00 4.26
7644 8153 6.464749 ATGAAAAGGATTTGTTCCATTGCACT 60.465 34.615 0.00 0.00 42.27 4.40
7695 8221 2.007399 CTTCGCTCGCTCGCTTTCAG 62.007 60.000 0.00 0.00 0.00 3.02
7721 8247 1.527034 CCTGTCACCAGACCAACATG 58.473 55.000 0.00 0.00 44.33 3.21
7755 8281 2.096248 AGTCAGTAGCTTCCTTCTCCG 58.904 52.381 0.00 0.00 0.00 4.63
7762 8288 1.623811 AGCTTCCTTCTCCGCAAGTTA 59.376 47.619 0.00 0.00 0.00 2.24
7875 8401 3.502211 ACTTTATTCCAAACACGAGCCTG 59.498 43.478 0.00 0.00 0.00 4.85
7883 8409 0.107831 AACACGAGCCTGGCACTTTA 59.892 50.000 22.65 0.00 0.00 1.85
7967 8493 0.968405 TTCCACAGCCCAATTTCTGC 59.032 50.000 0.00 0.00 33.80 4.26
7997 8523 0.810031 GCGTGGCATACCTACCTGTG 60.810 60.000 0.00 0.00 36.63 3.66
7999 8525 1.066430 CGTGGCATACCTACCTGTGTT 60.066 52.381 0.00 0.00 36.63 3.32
8000 8526 2.629051 GTGGCATACCTACCTGTGTTC 58.371 52.381 0.00 0.00 36.63 3.18
8005 8531 3.447586 GCATACCTACCTGTGTTCTCTCA 59.552 47.826 0.00 0.00 0.00 3.27
8205 8797 6.833041 TCTCTTCGATTCCTCTGTAGATACT 58.167 40.000 0.00 0.00 0.00 2.12
8206 8798 6.708502 TCTCTTCGATTCCTCTGTAGATACTG 59.291 42.308 0.00 0.00 0.00 2.74
8207 8799 6.358178 TCTTCGATTCCTCTGTAGATACTGT 58.642 40.000 0.00 0.00 0.00 3.55
8208 8800 7.506971 TCTTCGATTCCTCTGTAGATACTGTA 58.493 38.462 0.00 0.00 0.00 2.74
8209 8801 7.441760 TCTTCGATTCCTCTGTAGATACTGTAC 59.558 40.741 0.00 0.00 0.00 2.90
8252 8844 4.626081 CCCGGCCGGCTAATCCTG 62.626 72.222 39.46 18.81 0.00 3.86
8261 8853 3.297391 GCTAATCCTGAAGCCCGAG 57.703 57.895 0.00 0.00 32.40 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 49 5.336849 GGACTGTCTAATTCTGCTACTGTGT 60.337 44.000 7.85 0.00 0.00 3.72
42 50 5.105752 GGACTGTCTAATTCTGCTACTGTG 58.894 45.833 7.85 0.00 0.00 3.66
43 51 4.142359 CGGACTGTCTAATTCTGCTACTGT 60.142 45.833 7.85 0.00 0.00 3.55
44 52 4.096532 TCGGACTGTCTAATTCTGCTACTG 59.903 45.833 7.85 0.00 0.00 2.74
45 53 4.270834 TCGGACTGTCTAATTCTGCTACT 58.729 43.478 7.85 0.00 0.00 2.57
46 54 4.634184 TCGGACTGTCTAATTCTGCTAC 57.366 45.455 7.85 0.00 0.00 3.58
86 94 3.587923 GAGCTAGATCAGGCAGCAATAG 58.412 50.000 2.36 0.00 37.78 1.73
96 104 3.906014 TCGAATTCCGAGCTAGATCAG 57.094 47.619 8.99 0.00 43.23 2.90
129 137 0.914417 TGAGGCTAGGAGGTTTGGGG 60.914 60.000 0.00 0.00 0.00 4.96
161 169 2.227865 CGTGGGAAGGTAATTGTGTTGG 59.772 50.000 0.00 0.00 0.00 3.77
221 229 7.339466 AGTTGGTGAGTTCTGTTTTGAGTTTAT 59.661 33.333 0.00 0.00 0.00 1.40
232 240 2.039084 GGATGGAGTTGGTGAGTTCTGT 59.961 50.000 0.00 0.00 0.00 3.41
249 257 4.218417 ACCTCAAAATTCTCAAACCGGATG 59.782 41.667 9.46 7.12 0.00 3.51
258 266 5.243730 GGGTGAAATGACCTCAAAATTCTCA 59.756 40.000 0.00 0.00 36.14 3.27
284 292 2.939103 CTGGTGATTCCGAGGACATTTC 59.061 50.000 0.00 0.00 39.52 2.17
293 328 3.756434 GGTGAAATTTCTGGTGATTCCGA 59.244 43.478 18.64 0.00 39.52 4.55
312 351 0.516877 CGGTGTGCTTGTATGTGGTG 59.483 55.000 0.00 0.00 0.00 4.17
667 758 4.135153 CACCCTCTCTGACCGCGG 62.135 72.222 26.86 26.86 0.00 6.46
668 759 4.135153 CCACCCTCTCTGACCGCG 62.135 72.222 0.00 0.00 0.00 6.46
669 760 3.775654 CCCACCCTCTCTGACCGC 61.776 72.222 0.00 0.00 0.00 5.68
670 761 3.775654 GCCCACCCTCTCTGACCG 61.776 72.222 0.00 0.00 0.00 4.79
671 762 3.775654 CGCCCACCCTCTCTGACC 61.776 72.222 0.00 0.00 0.00 4.02
672 763 4.459089 GCGCCCACCCTCTCTGAC 62.459 72.222 0.00 0.00 0.00 3.51
673 764 4.704103 AGCGCCCACCCTCTCTGA 62.704 66.667 2.29 0.00 0.00 3.27
674 765 3.672295 GAAGCGCCCACCCTCTCTG 62.672 68.421 2.29 0.00 0.00 3.35
675 766 3.394836 GAAGCGCCCACCCTCTCT 61.395 66.667 2.29 0.00 0.00 3.10
769 908 2.869636 GCCCTCTTCAGTCTTCACACAG 60.870 54.545 0.00 0.00 0.00 3.66
774 913 0.603569 GTCGCCCTCTTCAGTCTTCA 59.396 55.000 0.00 0.00 0.00 3.02
775 914 0.456995 CGTCGCCCTCTTCAGTCTTC 60.457 60.000 0.00 0.00 0.00 2.87
776 915 1.587054 CGTCGCCCTCTTCAGTCTT 59.413 57.895 0.00 0.00 0.00 3.01
777 916 2.344203 CCGTCGCCCTCTTCAGTCT 61.344 63.158 0.00 0.00 0.00 3.24
778 917 2.182030 CCGTCGCCCTCTTCAGTC 59.818 66.667 0.00 0.00 0.00 3.51
779 918 4.070552 GCCGTCGCCCTCTTCAGT 62.071 66.667 0.00 0.00 0.00 3.41
901 1094 4.042934 AGGCCCAGCTTAACTTAGAAAGAA 59.957 41.667 0.00 0.00 0.00 2.52
902 1095 3.587506 AGGCCCAGCTTAACTTAGAAAGA 59.412 43.478 0.00 0.00 0.00 2.52
903 1096 3.956744 AGGCCCAGCTTAACTTAGAAAG 58.043 45.455 0.00 0.00 0.00 2.62
927 1139 6.540438 TTCTTTAGGGCTTTCTCTATCGAA 57.460 37.500 0.00 0.00 0.00 3.71
971 1185 0.038709 GATGGAAGCTCCTCGATCCG 60.039 60.000 0.00 0.00 37.46 4.18
1278 1492 4.760047 TCTTCTTCCGCAGCCGCC 62.760 66.667 0.00 0.00 33.11 6.13
1279 1493 3.191539 CTCTTCTTCCGCAGCCGC 61.192 66.667 0.00 0.00 0.00 6.53
1280 1494 2.510238 CCTCTTCTTCCGCAGCCG 60.510 66.667 0.00 0.00 0.00 5.52
1281 1495 2.821810 GCCTCTTCTTCCGCAGCC 60.822 66.667 0.00 0.00 0.00 4.85
1282 1496 3.191539 CGCCTCTTCTTCCGCAGC 61.192 66.667 0.00 0.00 0.00 5.25
1283 1497 1.518133 CTCGCCTCTTCTTCCGCAG 60.518 63.158 0.00 0.00 0.00 5.18
1284 1498 2.573869 CTCGCCTCTTCTTCCGCA 59.426 61.111 0.00 0.00 0.00 5.69
1359 1582 2.260844 TGTTCAGTTGAAGGAGCCAG 57.739 50.000 0.00 0.00 34.27 4.85
1388 1615 7.671302 ACGGAGTAGGTATCTATTCTACGTAA 58.329 38.462 8.72 0.00 41.94 3.18
1389 1616 7.233389 ACGGAGTAGGTATCTATTCTACGTA 57.767 40.000 8.72 0.00 41.94 3.57
1392 1640 8.620116 AGAAACGGAGTAGGTATCTATTCTAC 57.380 38.462 5.60 0.00 45.00 2.59
1405 1653 7.582352 TCATCGACAATATAGAAACGGAGTAG 58.418 38.462 0.00 0.00 45.00 2.57
1406 1654 7.500720 TCATCGACAATATAGAAACGGAGTA 57.499 36.000 0.00 0.00 45.00 2.59
1529 1784 0.323360 GAGGGCAGCCAATACCAACA 60.323 55.000 15.19 0.00 0.00 3.33
1530 1785 1.376609 CGAGGGCAGCCAATACCAAC 61.377 60.000 15.19 0.00 0.00 3.77
1531 1786 1.077787 CGAGGGCAGCCAATACCAA 60.078 57.895 15.19 0.00 0.00 3.67
1532 1787 1.344953 ATCGAGGGCAGCCAATACCA 61.345 55.000 15.19 0.00 0.00 3.25
1533 1788 0.886490 CATCGAGGGCAGCCAATACC 60.886 60.000 15.19 0.00 0.00 2.73
1534 1789 1.510480 GCATCGAGGGCAGCCAATAC 61.510 60.000 15.19 0.00 0.00 1.89
1535 1790 1.227943 GCATCGAGGGCAGCCAATA 60.228 57.895 15.19 0.00 0.00 1.90
1536 1791 2.517875 GCATCGAGGGCAGCCAAT 60.518 61.111 15.19 0.00 0.00 3.16
1547 1802 2.015227 TATGTGGCAGCTCGCATCGA 62.015 55.000 11.75 0.00 45.17 3.59
1548 1803 1.153597 TTATGTGGCAGCTCGCATCG 61.154 55.000 11.75 0.00 45.17 3.84
1549 1804 0.305922 GTTATGTGGCAGCTCGCATC 59.694 55.000 11.75 1.23 45.17 3.91
1550 1805 0.392863 TGTTATGTGGCAGCTCGCAT 60.393 50.000 12.68 12.68 45.17 4.73
1551 1806 0.605050 TTGTTATGTGGCAGCTCGCA 60.605 50.000 9.78 1.14 45.17 5.10
1552 1807 0.734889 ATTGTTATGTGGCAGCTCGC 59.265 50.000 0.00 0.00 41.28 5.03
1553 1808 2.032549 GCTATTGTTATGTGGCAGCTCG 60.033 50.000 0.00 0.00 0.00 5.03
1554 1809 2.945008 TGCTATTGTTATGTGGCAGCTC 59.055 45.455 0.00 0.00 0.00 4.09
1555 1810 3.003394 TGCTATTGTTATGTGGCAGCT 57.997 42.857 0.00 0.00 0.00 4.24
1556 1811 3.996150 ATGCTATTGTTATGTGGCAGC 57.004 42.857 0.00 0.00 33.23 5.25
1557 1812 6.564709 ACATATGCTATTGTTATGTGGCAG 57.435 37.500 1.58 0.00 35.73 4.85
1558 1813 6.238981 CCAACATATGCTATTGTTATGTGGCA 60.239 38.462 1.58 0.00 36.83 4.92
1559 1814 6.151691 CCAACATATGCTATTGTTATGTGGC 58.848 40.000 1.58 0.00 36.83 5.01
1560 1815 7.275888 ACCAACATATGCTATTGTTATGTGG 57.724 36.000 1.58 0.00 36.83 4.17
1563 1818 9.844790 CCAATACCAACATATGCTATTGTTATG 57.155 33.333 1.58 0.00 36.48 1.90
1564 1819 8.522830 GCCAATACCAACATATGCTATTGTTAT 58.477 33.333 1.58 0.00 36.48 1.89
1565 1820 7.723616 AGCCAATACCAACATATGCTATTGTTA 59.276 33.333 1.58 0.00 36.48 2.41
1566 1821 6.550854 AGCCAATACCAACATATGCTATTGTT 59.449 34.615 1.58 0.00 36.48 2.83
1567 1822 6.016024 CAGCCAATACCAACATATGCTATTGT 60.016 38.462 1.58 0.00 36.48 2.71
1568 1823 6.384224 CAGCCAATACCAACATATGCTATTG 58.616 40.000 1.58 8.79 37.34 1.90
1569 1824 5.047802 GCAGCCAATACCAACATATGCTATT 60.048 40.000 1.58 0.00 0.00 1.73
1570 1825 4.460382 GCAGCCAATACCAACATATGCTAT 59.540 41.667 1.58 0.00 0.00 2.97
1571 1826 3.820467 GCAGCCAATACCAACATATGCTA 59.180 43.478 1.58 0.00 0.00 3.49
1572 1827 2.624838 GCAGCCAATACCAACATATGCT 59.375 45.455 1.58 0.00 0.00 3.79
1573 1828 2.288395 GGCAGCCAATACCAACATATGC 60.288 50.000 6.55 0.00 0.00 3.14
1574 1829 2.297033 GGGCAGCCAATACCAACATATG 59.703 50.000 15.19 0.00 0.00 1.78
1575 1830 2.177669 AGGGCAGCCAATACCAACATAT 59.822 45.455 15.19 0.00 0.00 1.78
1576 1831 1.568597 AGGGCAGCCAATACCAACATA 59.431 47.619 15.19 0.00 0.00 2.29
1577 1832 0.336048 AGGGCAGCCAATACCAACAT 59.664 50.000 15.19 0.00 0.00 2.71
1588 1843 3.207669 CTCGCATCAAGGGCAGCC 61.208 66.667 1.26 1.26 0.00 4.85
1595 1850 1.374343 ATGTGGCAGCTCGCATCAAG 61.374 55.000 9.78 0.00 45.17 3.02
1602 1857 2.032549 GCTATTGTTATGTGGCAGCTCG 60.033 50.000 0.00 0.00 0.00 5.03
1605 1860 3.996150 ATGCTATTGTTATGTGGCAGC 57.004 42.857 0.00 0.00 33.23 5.25
1659 1914 9.166173 TGGCTTCTTATTATCAATCATATTCCG 57.834 33.333 0.00 0.00 0.00 4.30
1666 1921 8.274322 TCCTCTTTGGCTTCTTATTATCAATCA 58.726 33.333 0.00 0.00 35.26 2.57
1697 1952 5.067023 ACTTTGCTTCTTCTTGTTCTTCCTG 59.933 40.000 0.00 0.00 0.00 3.86
1699 1954 5.506686 ACTTTGCTTCTTCTTGTTCTTCC 57.493 39.130 0.00 0.00 0.00 3.46
1700 1955 7.645735 CCTAAACTTTGCTTCTTCTTGTTCTTC 59.354 37.037 0.00 0.00 0.00 2.87
1702 1957 6.039829 CCCTAAACTTTGCTTCTTCTTGTTCT 59.960 38.462 0.00 0.00 0.00 3.01
1706 1961 4.021981 CCCCCTAAACTTTGCTTCTTCTTG 60.022 45.833 0.00 0.00 0.00 3.02
1728 1986 4.741321 TTCATCAATGCTTGGATTTCCC 57.259 40.909 0.00 0.00 34.29 3.97
1729 1988 5.583457 CCTTTTCATCAATGCTTGGATTTCC 59.417 40.000 0.00 0.00 0.00 3.13
1730 1989 6.400568 TCCTTTTCATCAATGCTTGGATTTC 58.599 36.000 0.00 0.00 0.00 2.17
1752 2011 2.238521 TGGCAAGGACAATGTTCTTCC 58.761 47.619 3.49 9.46 27.27 3.46
1842 2101 2.758423 GCGGAAACTGAAATGGGGTAAT 59.242 45.455 0.00 0.00 0.00 1.89
1894 2154 3.070576 GTGCCATGGACCAAGCCC 61.071 66.667 18.40 2.49 0.00 5.19
1895 2155 1.683365 ATGTGCCATGGACCAAGCC 60.683 57.895 18.40 8.67 0.00 4.35
1912 2172 5.879223 GGACAATCAGAATCTGTGAAGTCAT 59.121 40.000 19.93 2.71 35.96 3.06
1994 2255 2.055838 CACACAACACATGCATTGAGC 58.944 47.619 14.68 0.00 45.96 4.26
2043 2304 7.073265 ACGTAACGTATTTTCAAACATTCCAG 58.927 34.615 0.00 0.00 38.73 3.86
2056 2317 5.812127 GGACCCATTAGAACGTAACGTATTT 59.188 40.000 0.00 0.00 39.99 1.40
2200 2461 7.800767 TCTTTTTCTTCTTCACAATGATCTCG 58.199 34.615 0.00 0.00 0.00 4.04
2293 2554 7.100458 AGCAACAGTAAAGAGACAACAAAAT 57.900 32.000 0.00 0.00 0.00 1.82
2552 2813 9.042008 TCGTCTTCCTATATTTTGCAATAGAAC 57.958 33.333 0.00 0.00 0.00 3.01
2625 2886 7.273815 CCTACAGAGAAAATAAACAGAGTCGTC 59.726 40.741 0.00 0.00 0.00 4.20
2704 2965 0.321034 AATGAACTCTGCTGCAGCGA 60.321 50.000 32.11 27.80 45.83 4.93
2860 3121 4.623595 ACTAAAAAGTTGTGCCAAAACACG 59.376 37.500 0.00 0.00 43.74 4.49
2874 3135 8.747538 AGTGAAGGTGAACAATACTAAAAAGT 57.252 30.769 0.00 0.00 0.00 2.66
2884 3145 5.010012 GTCCATGAAAGTGAAGGTGAACAAT 59.990 40.000 0.00 0.00 0.00 2.71
2894 3155 8.154203 TGAGTATAAACTGTCCATGAAAGTGAA 58.846 33.333 0.00 0.00 35.56 3.18
2913 3174 9.797642 TCGGGAATAAGTATTGTAGTGAGTATA 57.202 33.333 0.00 0.00 0.00 1.47
2914 3175 8.574737 GTCGGGAATAAGTATTGTAGTGAGTAT 58.425 37.037 0.00 0.00 0.00 2.12
2915 3176 7.013655 GGTCGGGAATAAGTATTGTAGTGAGTA 59.986 40.741 0.00 0.00 0.00 2.59
2916 3177 6.183360 GGTCGGGAATAAGTATTGTAGTGAGT 60.183 42.308 0.00 0.00 0.00 3.41
2917 3178 6.040616 AGGTCGGGAATAAGTATTGTAGTGAG 59.959 42.308 0.00 0.00 0.00 3.51
2918 3179 5.895534 AGGTCGGGAATAAGTATTGTAGTGA 59.104 40.000 0.00 0.00 0.00 3.41
2919 3180 6.158023 AGGTCGGGAATAAGTATTGTAGTG 57.842 41.667 0.00 0.00 0.00 2.74
2920 3181 7.065504 AGTAGGTCGGGAATAAGTATTGTAGT 58.934 38.462 0.00 0.00 0.00 2.73
2921 3182 7.230108 TGAGTAGGTCGGGAATAAGTATTGTAG 59.770 40.741 0.00 0.00 0.00 2.74
2922 3183 7.013655 GTGAGTAGGTCGGGAATAAGTATTGTA 59.986 40.741 0.00 0.00 0.00 2.41
2923 3184 5.895534 TGAGTAGGTCGGGAATAAGTATTGT 59.104 40.000 0.00 0.00 0.00 2.71
2924 3185 6.040616 AGTGAGTAGGTCGGGAATAAGTATTG 59.959 42.308 0.00 0.00 0.00 1.90
2968 3230 3.245122 TGAGCCTAACAAACCTAAAGGGG 60.245 47.826 0.20 0.00 40.27 4.79
2985 3247 5.831702 ATTCAGATTTTGTGAGATGAGCC 57.168 39.130 0.00 0.00 0.00 4.70
2986 3248 6.618811 ACAATTCAGATTTTGTGAGATGAGC 58.381 36.000 0.00 0.00 34.87 4.26
2987 3249 7.813645 TGACAATTCAGATTTTGTGAGATGAG 58.186 34.615 4.41 0.00 36.25 2.90
2988 3250 7.748691 TGACAATTCAGATTTTGTGAGATGA 57.251 32.000 4.41 0.00 36.25 2.92
3080 3343 6.239458 GGTTAATCCCACATTGAGAACCAAAA 60.239 38.462 0.00 0.00 38.43 2.44
3448 3716 1.074405 AGCAGATGAAAGTTCAGGGCA 59.926 47.619 13.43 0.00 41.08 5.36
3784 4053 6.622549 ACCTATGAAGTAAACACGAGAGAAG 58.377 40.000 0.00 0.00 0.00 2.85
4064 4334 3.801307 AACCAACTAACCTAACCCTGG 57.199 47.619 0.00 0.00 0.00 4.45
4075 4345 7.801893 TCCTTGGAGACTAATAACCAACTAA 57.198 36.000 0.00 0.00 37.46 2.24
4158 4429 5.120053 CGATAGTTGTAGCAAACACATCACA 59.880 40.000 0.00 0.00 38.00 3.58
4182 4453 0.734309 TGCATTGGACGTGCATGATC 59.266 50.000 11.62 6.45 46.76 2.92
4498 4770 1.067565 GTCCTGATTGACTCACAGCGA 60.068 52.381 0.00 0.00 32.39 4.93
4543 4815 1.217882 GCGTTTGAGATATGGGACCG 58.782 55.000 0.00 0.00 0.00 4.79
4774 5061 3.936902 GTGTAACAAAGTGAAGTCGCA 57.063 42.857 0.00 0.00 36.32 5.10
4841 5130 4.559862 ATTGAACTGGAGGTGAGGTTAG 57.440 45.455 0.00 0.00 0.00 2.34
4916 5208 2.879026 ACGAGGTTCCTTTTCTTTCTGC 59.121 45.455 0.00 0.00 0.00 4.26
5018 5311 4.237349 AGCACTTTTGGTAACCATTTCG 57.763 40.909 0.00 0.00 31.53 3.46
5086 5379 8.656806 CCCTAGACACACCCATTTAAATATAGA 58.343 37.037 0.00 0.00 0.00 1.98
5087 5380 7.390718 GCCCTAGACACACCCATTTAAATATAG 59.609 40.741 0.00 0.00 0.00 1.31
5088 5381 7.147284 TGCCCTAGACACACCCATTTAAATATA 60.147 37.037 0.00 0.00 0.00 0.86
5089 5382 6.068670 GCCCTAGACACACCCATTTAAATAT 58.931 40.000 0.00 0.00 0.00 1.28
5090 5383 5.044772 TGCCCTAGACACACCCATTTAAATA 60.045 40.000 0.00 0.00 0.00 1.40
5091 5384 4.264172 TGCCCTAGACACACCCATTTAAAT 60.264 41.667 0.00 0.00 0.00 1.40
5092 5385 3.074687 TGCCCTAGACACACCCATTTAAA 59.925 43.478 0.00 0.00 0.00 1.52
5093 5386 2.645297 TGCCCTAGACACACCCATTTAA 59.355 45.455 0.00 0.00 0.00 1.52
5094 5387 2.026636 GTGCCCTAGACACACCCATTTA 60.027 50.000 10.07 0.00 37.96 1.40
5095 5388 1.072266 TGCCCTAGACACACCCATTT 58.928 50.000 0.00 0.00 0.00 2.32
5096 5389 0.328258 GTGCCCTAGACACACCCATT 59.672 55.000 10.07 0.00 37.96 3.16
5097 5390 0.840288 TGTGCCCTAGACACACCCAT 60.840 55.000 12.81 0.00 42.88 4.00
5098 5391 1.460497 TGTGCCCTAGACACACCCA 60.460 57.895 12.81 0.00 42.88 4.51
5099 5392 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
5103 5396 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
5115 5408 8.992835 TGCAATAACTATAGCACATCTAGATG 57.007 34.615 27.63 27.63 44.15 2.90
5125 5418 8.421002 TCACTTAGATGTGCAATAACTATAGCA 58.579 33.333 0.00 0.00 37.81 3.49
5126 5419 8.818141 TCACTTAGATGTGCAATAACTATAGC 57.182 34.615 0.00 0.00 37.81 2.97
5127 5420 9.973450 ACTCACTTAGATGTGCAATAACTATAG 57.027 33.333 0.00 0.00 37.81 1.31
5128 5421 9.750125 CACTCACTTAGATGTGCAATAACTATA 57.250 33.333 0.00 0.00 37.81 1.31
5129 5422 8.478066 TCACTCACTTAGATGTGCAATAACTAT 58.522 33.333 0.00 0.00 37.81 2.12
5130 5423 7.836842 TCACTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
5131 5424 6.701340 TCACTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
5132 5425 6.968131 TCACTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
5133 5426 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
5134 5427 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
5135 5428 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
5136 5429 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
5137 5430 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
5138 5431 5.447010 GCTTGATTCACTCACTTAGATGTGC 60.447 44.000 0.00 0.00 37.81 4.57
5139 5432 5.640783 TGCTTGATTCACTCACTTAGATGTG 59.359 40.000 0.00 0.00 39.15 3.21
5140 5433 5.798132 TGCTTGATTCACTCACTTAGATGT 58.202 37.500 0.00 0.00 32.17 3.06
5141 5434 6.922247 ATGCTTGATTCACTCACTTAGATG 57.078 37.500 0.00 0.00 32.17 2.90
5142 5435 8.016301 TCTATGCTTGATTCACTCACTTAGAT 57.984 34.615 0.00 0.00 32.17 1.98
5143 5436 7.340487 TCTCTATGCTTGATTCACTCACTTAGA 59.660 37.037 0.00 0.00 32.17 2.10
5144 5437 7.487484 TCTCTATGCTTGATTCACTCACTTAG 58.513 38.462 0.00 0.00 32.17 2.18
5145 5438 7.410120 TCTCTATGCTTGATTCACTCACTTA 57.590 36.000 0.00 0.00 32.17 2.24
5146 5439 6.291648 TCTCTATGCTTGATTCACTCACTT 57.708 37.500 0.00 0.00 32.17 3.16
5147 5440 5.681954 GCTCTCTATGCTTGATTCACTCACT 60.682 44.000 0.00 0.00 32.17 3.41
5148 5441 4.507388 GCTCTCTATGCTTGATTCACTCAC 59.493 45.833 0.00 0.00 32.17 3.51
5149 5442 4.161001 TGCTCTCTATGCTTGATTCACTCA 59.839 41.667 0.00 0.00 0.00 3.41
5150 5443 4.691175 TGCTCTCTATGCTTGATTCACTC 58.309 43.478 0.00 0.00 0.00 3.51
5151 5444 4.750021 TGCTCTCTATGCTTGATTCACT 57.250 40.909 0.00 0.00 0.00 3.41
5152 5445 5.808042 TTTGCTCTCTATGCTTGATTCAC 57.192 39.130 0.00 0.00 0.00 3.18
5153 5446 6.175471 TCTTTTGCTCTCTATGCTTGATTCA 58.825 36.000 0.00 0.00 0.00 2.57
5154 5447 6.674694 TCTTTTGCTCTCTATGCTTGATTC 57.325 37.500 0.00 0.00 0.00 2.52
5155 5448 7.458409 TTTCTTTTGCTCTCTATGCTTGATT 57.542 32.000 0.00 0.00 0.00 2.57
5156 5449 7.458409 TTTTCTTTTGCTCTCTATGCTTGAT 57.542 32.000 0.00 0.00 0.00 2.57
5157 5450 6.882610 TTTTCTTTTGCTCTCTATGCTTGA 57.117 33.333 0.00 0.00 0.00 3.02
5178 5471 9.810545 TCGTGTGGATATTTTCTTTTTCTTTTT 57.189 25.926 0.00 0.00 0.00 1.94
5179 5472 9.810545 TTCGTGTGGATATTTTCTTTTTCTTTT 57.189 25.926 0.00 0.00 0.00 2.27
5180 5473 9.981114 ATTCGTGTGGATATTTTCTTTTTCTTT 57.019 25.926 0.00 0.00 0.00 2.52
5181 5474 9.626045 GATTCGTGTGGATATTTTCTTTTTCTT 57.374 29.630 0.00 0.00 0.00 2.52
5182 5475 9.014297 AGATTCGTGTGGATATTTTCTTTTTCT 57.986 29.630 0.00 0.00 0.00 2.52
5183 5476 9.278734 GAGATTCGTGTGGATATTTTCTTTTTC 57.721 33.333 0.00 0.00 0.00 2.29
5184 5477 8.792633 TGAGATTCGTGTGGATATTTTCTTTTT 58.207 29.630 0.00 0.00 0.00 1.94
5185 5478 8.335532 TGAGATTCGTGTGGATATTTTCTTTT 57.664 30.769 0.00 0.00 0.00 2.27
5186 5479 7.921786 TGAGATTCGTGTGGATATTTTCTTT 57.078 32.000 0.00 0.00 0.00 2.52
5187 5480 7.413000 CGTTGAGATTCGTGTGGATATTTTCTT 60.413 37.037 0.00 0.00 0.00 2.52
5188 5481 6.036083 CGTTGAGATTCGTGTGGATATTTTCT 59.964 38.462 0.00 0.00 0.00 2.52
5189 5482 6.183360 ACGTTGAGATTCGTGTGGATATTTTC 60.183 38.462 0.00 0.00 38.85 2.29
5190 5483 5.642063 ACGTTGAGATTCGTGTGGATATTTT 59.358 36.000 0.00 0.00 38.85 1.82
5191 5484 5.175859 ACGTTGAGATTCGTGTGGATATTT 58.824 37.500 0.00 0.00 38.85 1.40
5192 5485 4.755411 ACGTTGAGATTCGTGTGGATATT 58.245 39.130 0.00 0.00 38.85 1.28
5193 5486 4.386867 ACGTTGAGATTCGTGTGGATAT 57.613 40.909 0.00 0.00 38.85 1.63
5194 5487 3.861276 ACGTTGAGATTCGTGTGGATA 57.139 42.857 0.00 0.00 38.85 2.59
5195 5488 2.743636 ACGTTGAGATTCGTGTGGAT 57.256 45.000 0.00 0.00 38.85 3.41
5196 5489 3.253921 TCTTACGTTGAGATTCGTGTGGA 59.746 43.478 0.00 0.00 40.50 4.02
5197 5490 3.571571 TCTTACGTTGAGATTCGTGTGG 58.428 45.455 0.00 0.00 40.50 4.17
5198 5491 4.857037 TGATCTTACGTTGAGATTCGTGTG 59.143 41.667 13.35 0.00 40.50 3.82
5199 5492 5.055642 TGATCTTACGTTGAGATTCGTGT 57.944 39.130 13.35 0.00 40.50 4.49
5200 5493 6.253512 TCATTGATCTTACGTTGAGATTCGTG 59.746 38.462 13.35 11.92 40.50 4.35
5201 5494 6.253727 GTCATTGATCTTACGTTGAGATTCGT 59.746 38.462 13.35 0.00 42.82 3.85
5202 5495 6.253512 TGTCATTGATCTTACGTTGAGATTCG 59.746 38.462 13.35 5.46 34.13 3.34
5203 5496 7.525688 TGTCATTGATCTTACGTTGAGATTC 57.474 36.000 13.35 8.73 34.13 2.52
5204 5497 9.254133 CTATGTCATTGATCTTACGTTGAGATT 57.746 33.333 13.35 0.00 34.13 2.40
5205 5498 7.869937 CCTATGTCATTGATCTTACGTTGAGAT 59.130 37.037 12.34 12.34 36.60 2.75
5206 5499 7.068226 TCCTATGTCATTGATCTTACGTTGAGA 59.932 37.037 0.00 0.00 0.00 3.27
5207 5500 7.168302 GTCCTATGTCATTGATCTTACGTTGAG 59.832 40.741 0.00 0.00 0.00 3.02
5208 5501 6.978659 GTCCTATGTCATTGATCTTACGTTGA 59.021 38.462 0.00 0.00 0.00 3.18
5209 5502 6.980978 AGTCCTATGTCATTGATCTTACGTTG 59.019 38.462 0.00 0.00 0.00 4.10
5210 5503 7.113658 AGTCCTATGTCATTGATCTTACGTT 57.886 36.000 0.00 0.00 0.00 3.99
5211 5504 6.716934 AGTCCTATGTCATTGATCTTACGT 57.283 37.500 0.00 0.00 0.00 3.57
5212 5505 8.568794 TCTAAGTCCTATGTCATTGATCTTACG 58.431 37.037 0.00 0.00 0.00 3.18
5215 5508 8.932610 ACATCTAAGTCCTATGTCATTGATCTT 58.067 33.333 0.00 0.82 0.00 2.40
5216 5509 8.366401 CACATCTAAGTCCTATGTCATTGATCT 58.634 37.037 0.00 0.00 31.60 2.75
5217 5510 7.117523 GCACATCTAAGTCCTATGTCATTGATC 59.882 40.741 0.00 0.00 31.60 2.92
5218 5511 6.933521 GCACATCTAAGTCCTATGTCATTGAT 59.066 38.462 0.00 0.00 31.60 2.57
5219 5512 6.127083 TGCACATCTAAGTCCTATGTCATTGA 60.127 38.462 0.00 0.00 31.60 2.57
5220 5513 6.051074 TGCACATCTAAGTCCTATGTCATTG 58.949 40.000 0.00 0.00 31.60 2.82
5221 5514 6.239217 TGCACATCTAAGTCCTATGTCATT 57.761 37.500 0.00 0.00 31.60 2.57
5222 5515 5.876651 TGCACATCTAAGTCCTATGTCAT 57.123 39.130 0.00 0.00 31.60 3.06
5223 5516 5.675684 TTGCACATCTAAGTCCTATGTCA 57.324 39.130 0.00 0.00 31.60 3.58
5224 5517 7.437748 AGTATTGCACATCTAAGTCCTATGTC 58.562 38.462 0.00 0.00 31.60 3.06
5225 5518 7.366847 AGTATTGCACATCTAAGTCCTATGT 57.633 36.000 0.00 0.00 34.22 2.29
5226 5519 9.935241 ATAAGTATTGCACATCTAAGTCCTATG 57.065 33.333 0.00 0.00 0.00 2.23
5227 5520 9.935241 CATAAGTATTGCACATCTAAGTCCTAT 57.065 33.333 0.00 0.00 0.00 2.57
5228 5521 8.367911 CCATAAGTATTGCACATCTAAGTCCTA 58.632 37.037 0.00 0.00 0.00 2.94
5229 5522 7.220030 CCATAAGTATTGCACATCTAAGTCCT 58.780 38.462 0.00 0.00 0.00 3.85
5230 5523 6.073003 GCCATAAGTATTGCACATCTAAGTCC 60.073 42.308 0.00 0.00 0.00 3.85
5231 5524 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
5232 5525 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
5233 5526 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
5241 5534 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
5242 5535 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
5313 5606 7.416664 CGGGATTTAGAAAATCACCATGTCATT 60.417 37.037 12.91 0.00 0.00 2.57
5701 6017 6.047870 AGCATTCACAAGAATACTCTAGCAG 58.952 40.000 0.00 0.00 42.46 4.24
6104 6438 1.472480 CCAGGGTTACGAAAGCAATGG 59.528 52.381 0.00 0.00 36.07 3.16
6216 6550 4.156008 GGTATCACTCGCCTTGTCAAAAAT 59.844 41.667 0.00 0.00 0.00 1.82
6281 6615 5.139435 TGTACCTGTCATCAGAACTTCTG 57.861 43.478 12.02 12.02 45.59 3.02
6663 6999 0.397941 TCTGTGCTTCCTGGACTTGG 59.602 55.000 0.00 0.00 37.91 3.61
6693 7029 0.603569 TCCAGACTCCAGACTTTCGC 59.396 55.000 0.00 0.00 0.00 4.70
6827 7190 0.744414 CCCGATGATTTGTCCGCAGT 60.744 55.000 0.00 0.00 0.00 4.40
6904 7267 3.254892 GCCTCTTCCACTAACTTTCTCG 58.745 50.000 0.00 0.00 0.00 4.04
6912 7275 3.587061 TCCAGATTTGCCTCTTCCACTAA 59.413 43.478 0.00 0.00 0.00 2.24
7020 7383 1.131638 AACTCCACTGCTTGACCTCA 58.868 50.000 0.00 0.00 0.00 3.86
7086 7449 3.285484 CTGCTGCTGGACCTTTGATAAT 58.715 45.455 0.00 0.00 0.00 1.28
7217 7580 2.945668 GCGAGCTCAAATCCCTAATGTT 59.054 45.455 15.40 0.00 0.00 2.71
7382 7745 9.249053 TGGCATCTATACCACATTTTCTTTTAA 57.751 29.630 0.00 0.00 0.00 1.52
7455 7831 2.303022 TCGGCAAAGAGGAGAAGACAAT 59.697 45.455 0.00 0.00 0.00 2.71
7597 7974 6.824704 TCATTCAATAGCAAGTGTGATGATGA 59.175 34.615 0.00 0.00 0.00 2.92
7598 7975 7.023197 TCATTCAATAGCAAGTGTGATGATG 57.977 36.000 0.00 0.00 0.00 3.07
7599 7976 7.634671 TTCATTCAATAGCAAGTGTGATGAT 57.365 32.000 0.00 0.00 30.60 2.45
7641 8150 1.296715 CCCTTCCCTCACCGAAGTG 59.703 63.158 0.00 0.00 46.00 3.16
7642 8151 1.918800 CCCCTTCCCTCACCGAAGT 60.919 63.158 0.00 0.00 35.90 3.01
7644 8153 2.609610 CCCCCTTCCCTCACCGAA 60.610 66.667 0.00 0.00 0.00 4.30
7721 8247 6.578023 AGCTACTGACTGATAAGTTCCATTC 58.422 40.000 0.00 0.00 0.00 2.67
7755 8281 7.491048 TCAAATTCTTGTGAAAAGGTAACTTGC 59.509 33.333 0.00 0.00 44.41 4.01
7900 8426 4.047059 CAAAGCCACGCAGCCCAG 62.047 66.667 0.00 0.00 0.00 4.45
7901 8427 4.577677 TCAAAGCCACGCAGCCCA 62.578 61.111 0.00 0.00 0.00 5.36
8065 8625 3.127589 GGTGGCGTTTGTTATGCTTTTT 58.872 40.909 0.00 0.00 38.86 1.94
8066 8626 2.547007 GGGTGGCGTTTGTTATGCTTTT 60.547 45.455 0.00 0.00 38.86 2.27
8067 8627 1.000394 GGGTGGCGTTTGTTATGCTTT 60.000 47.619 0.00 0.00 38.86 3.51
8068 8628 0.601057 GGGTGGCGTTTGTTATGCTT 59.399 50.000 0.00 0.00 38.86 3.91
8069 8629 0.538516 TGGGTGGCGTTTGTTATGCT 60.539 50.000 0.00 0.00 38.86 3.79
8070 8630 0.530288 ATGGGTGGCGTTTGTTATGC 59.470 50.000 0.00 0.00 38.08 3.14
8071 8631 1.202132 CGATGGGTGGCGTTTGTTATG 60.202 52.381 0.00 0.00 0.00 1.90
8072 8632 1.091537 CGATGGGTGGCGTTTGTTAT 58.908 50.000 0.00 0.00 0.00 1.89
8073 8633 0.956410 CCGATGGGTGGCGTTTGTTA 60.956 55.000 0.00 0.00 0.00 2.41
8074 8634 2.265182 CCGATGGGTGGCGTTTGTT 61.265 57.895 0.00 0.00 0.00 2.83
8075 8635 2.671619 CCGATGGGTGGCGTTTGT 60.672 61.111 0.00 0.00 0.00 2.83
8076 8636 3.439540 CCCGATGGGTGGCGTTTG 61.440 66.667 0.00 0.00 38.25 2.93
8108 8672 2.740506 TTCTCCCCCTTCGTTTGTTT 57.259 45.000 0.00 0.00 0.00 2.83
8110 8674 1.818131 GCTTTCTCCCCCTTCGTTTGT 60.818 52.381 0.00 0.00 0.00 2.83
8158 8750 0.245539 AAGGCACGCACAGTACGTAT 59.754 50.000 0.00 0.00 42.96 3.06
8205 8797 0.599558 CCCGTCCTCTCAAACGTACA 59.400 55.000 0.00 0.00 37.19 2.90
8206 8798 0.108945 CCCCGTCCTCTCAAACGTAC 60.109 60.000 0.00 0.00 37.19 3.67
8207 8799 0.540365 ACCCCGTCCTCTCAAACGTA 60.540 55.000 0.00 0.00 37.19 3.57
8208 8800 1.405272 AACCCCGTCCTCTCAAACGT 61.405 55.000 0.00 0.00 37.19 3.99
8209 8801 0.669625 GAACCCCGTCCTCTCAAACG 60.670 60.000 0.00 0.00 38.58 3.60
8252 8844 1.066143 TCCAGAATGAACTCGGGCTTC 60.066 52.381 0.00 0.00 39.69 3.86
8261 8853 4.837567 CGAATTCGGATTCCAGAATGAAC 58.162 43.478 20.16 12.98 38.76 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.