Multiple sequence alignment - TraesCS5D01G430000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G430000 chr5D 100.000 4200 0 0 1 4200 487414830 487410631 0.000000e+00 7757
1 TraesCS5D01G430000 chr5D 87.989 741 71 12 2824 3552 487401481 487400747 0.000000e+00 859
2 TraesCS5D01G430000 chr5D 90.288 659 57 4 3545 4199 328727147 328726492 0.000000e+00 856
3 TraesCS5D01G430000 chr5D 89.571 652 64 2 3548 4199 444886800 444886153 0.000000e+00 824
4 TraesCS5D01G430000 chr5D 93.929 280 16 1 3062 3341 487397801 487397523 5.020000e-114 422
5 TraesCS5D01G430000 chr5D 91.786 280 20 2 3062 3341 487351549 487351273 1.830000e-103 387
6 TraesCS5D01G430000 chr5D 97.297 185 5 0 3368 3552 487398916 487398732 8.770000e-82 315
7 TraesCS5D01G430000 chr5D 91.304 230 10 2 3333 3552 487350314 487350085 5.280000e-79 305
8 TraesCS5D01G430000 chr5D 90.476 231 15 5 2548 2777 487401790 487401566 8.830000e-77 298
9 TraesCS5D01G430000 chr5D 92.130 216 8 4 3346 3552 487396557 487396342 3.180000e-76 296
10 TraesCS5D01G430000 chr5D 90.674 193 14 3 1 189 365155304 365155112 1.940000e-63 254
11 TraesCS5D01G430000 chr5D 91.061 179 13 3 1103 1279 475152939 475153116 5.430000e-59 239
12 TraesCS5D01G430000 chr5D 83.448 145 7 7 2430 2559 487403223 487403081 7.380000e-23 119
13 TraesCS5D01G430000 chr5B 86.939 1784 135 45 1295 3020 599958636 599956893 0.000000e+00 1914
14 TraesCS5D01G430000 chr5B 88.453 892 54 16 254 1122 599959509 599958644 0.000000e+00 1031
15 TraesCS5D01G430000 chr5B 91.544 544 33 4 3022 3552 599956809 599956266 0.000000e+00 737
16 TraesCS5D01G430000 chr5B 91.022 401 22 5 190 577 599959949 599959550 2.880000e-146 529
17 TraesCS5D01G430000 chr5B 85.872 453 41 6 3109 3552 599953562 599953124 1.060000e-125 460
18 TraesCS5D01G430000 chr5B 87.898 314 24 9 2428 2737 599954960 599954657 1.440000e-94 357
19 TraesCS5D01G430000 chr5B 91.089 101 9 0 2722 2822 599953725 599953625 2.040000e-28 137
20 TraesCS5D01G430000 chr5A 89.490 942 54 14 191 1122 607838283 607837377 0.000000e+00 1149
21 TraesCS5D01G430000 chr5A 90.694 677 53 4 1809 2483 607836567 607835899 0.000000e+00 893
22 TraesCS5D01G430000 chr5A 88.029 685 56 7 2887 3552 607835489 607834812 0.000000e+00 787
23 TraesCS5D01G430000 chr5A 87.743 514 52 7 2842 3348 607807530 607807021 1.300000e-164 590
24 TraesCS5D01G430000 chr5A 85.929 533 45 17 1295 1810 607837369 607836850 3.690000e-150 542
25 TraesCS5D01G430000 chr5A 89.005 382 16 10 2432 2793 607811491 607811116 2.300000e-122 449
26 TraesCS5D01G430000 chr5A 90.909 308 19 2 2516 2822 607835830 607835531 5.060000e-109 405
27 TraesCS5D01G430000 chr5A 93.827 162 10 0 1121 1282 605231304 605231143 1.170000e-60 244
28 TraesCS5D01G430000 chr4D 90.076 655 60 4 3545 4197 36844166 36844817 0.000000e+00 845
29 TraesCS5D01G430000 chr4D 89.818 658 61 4 3546 4199 465442213 465441558 0.000000e+00 839
30 TraesCS5D01G430000 chr4D 89.697 660 61 5 3543 4199 37340670 37341325 0.000000e+00 835
31 TraesCS5D01G430000 chr4D 91.146 192 14 2 1 189 231201381 231201190 1.500000e-64 257
32 TraesCS5D01G430000 chr7D 90.000 650 61 3 3549 4197 422574410 422575056 0.000000e+00 837
33 TraesCS5D01G430000 chr7D 90.722 194 13 3 1 189 94753780 94753973 1.940000e-63 254
34 TraesCS5D01G430000 chr6D 90.139 649 56 6 3554 4199 34429162 34429805 0.000000e+00 837
35 TraesCS5D01G430000 chr2D 89.660 648 67 0 3552 4199 616993007 616992360 0.000000e+00 826
36 TraesCS5D01G430000 chr3D 89.466 655 64 5 3545 4199 419998403 419997754 0.000000e+00 822
37 TraesCS5D01G430000 chr3D 91.623 191 12 3 1 187 524012472 524012282 1.160000e-65 261
38 TraesCS5D01G430000 chr3D 91.237 194 11 5 1 189 365118517 365118709 4.170000e-65 259
39 TraesCS5D01G430000 chr3D 91.237 194 12 4 1 189 463074244 463074051 4.170000e-65 259
40 TraesCS5D01G430000 chr3D 90.816 196 11 6 1 189 608916526 608916331 5.390000e-64 255
41 TraesCS5D01G430000 chr3D 94.479 163 9 0 1121 1283 449740443 449740281 6.970000e-63 252
42 TraesCS5D01G430000 chr3D 93.373 166 8 3 1121 1286 104026066 104025904 4.200000e-60 243
43 TraesCS5D01G430000 chr3D 92.771 166 12 0 1119 1284 187836306 187836471 1.510000e-59 241
44 TraesCS5D01G430000 chrUn 91.022 401 22 5 190 577 458116279 458115880 2.880000e-146 529
45 TraesCS5D01G430000 chr2B 91.022 401 22 5 190 577 17451596 17451197 2.880000e-146 529
46 TraesCS5D01G430000 chr3B 95.181 166 7 1 1121 1286 154663205 154663041 1.160000e-65 261
47 TraesCS5D01G430000 chr6A 91.146 192 12 4 1 189 570438039 570438228 5.390000e-64 255
48 TraesCS5D01G430000 chr4B 90.206 194 16 2 1 193 591495485 591495294 2.510000e-62 250
49 TraesCS5D01G430000 chr4B 93.373 166 9 2 1121 1286 119270387 119270224 1.170000e-60 244
50 TraesCS5D01G430000 chr1D 93.452 168 9 2 1121 1288 30100423 30100588 9.020000e-62 248
51 TraesCS5D01G430000 chr3A 92.771 166 12 0 1119 1284 238686373 238686208 1.510000e-59 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G430000 chr5D 487410631 487414830 4199 True 7757.000000 7757 100.000000 1 4200 1 chr5D.!!$R4 4199
1 TraesCS5D01G430000 chr5D 328726492 328727147 655 True 856.000000 856 90.288000 3545 4199 1 chr5D.!!$R1 654
2 TraesCS5D01G430000 chr5D 444886153 444886800 647 True 824.000000 824 89.571000 3548 4199 1 chr5D.!!$R3 651
3 TraesCS5D01G430000 chr5D 487396342 487403223 6881 True 384.833333 859 90.878167 2430 3552 6 chr5D.!!$R6 1122
4 TraesCS5D01G430000 chr5D 487350085 487351549 1464 True 346.000000 387 91.545000 3062 3552 2 chr5D.!!$R5 490
5 TraesCS5D01G430000 chr5B 599953124 599959949 6825 True 737.857143 1914 88.973857 190 3552 7 chr5B.!!$R1 3362
6 TraesCS5D01G430000 chr5A 607834812 607838283 3471 True 755.200000 1149 89.010200 191 3552 5 chr5A.!!$R3 3361
7 TraesCS5D01G430000 chr5A 607807021 607811491 4470 True 519.500000 590 88.374000 2432 3348 2 chr5A.!!$R2 916
8 TraesCS5D01G430000 chr4D 36844166 36844817 651 False 845.000000 845 90.076000 3545 4197 1 chr4D.!!$F1 652
9 TraesCS5D01G430000 chr4D 465441558 465442213 655 True 839.000000 839 89.818000 3546 4199 1 chr4D.!!$R2 653
10 TraesCS5D01G430000 chr4D 37340670 37341325 655 False 835.000000 835 89.697000 3543 4199 1 chr4D.!!$F2 656
11 TraesCS5D01G430000 chr7D 422574410 422575056 646 False 837.000000 837 90.000000 3549 4197 1 chr7D.!!$F2 648
12 TraesCS5D01G430000 chr6D 34429162 34429805 643 False 837.000000 837 90.139000 3554 4199 1 chr6D.!!$F1 645
13 TraesCS5D01G430000 chr2D 616992360 616993007 647 True 826.000000 826 89.660000 3552 4199 1 chr2D.!!$R1 647
14 TraesCS5D01G430000 chr3D 419997754 419998403 649 True 822.000000 822 89.466000 3545 4199 1 chr3D.!!$R2 654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.040499 GAGGGAGGGAGAGAGTGTGT 59.960 60.0 0.00 0.0 0.00 3.72 F
787 1163 0.114364 ACTAGGCCAAACCCCCTTTG 59.886 55.0 5.01 0.0 40.58 2.77 F
1496 1891 0.316522 TCTGTCTCTGTGCTCTGTGC 59.683 55.0 0.00 0.0 43.25 4.57 F
2007 2689 0.560688 TTTTCCTGGCCTCTTGGGTT 59.439 50.0 3.32 0.0 37.43 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 1891 0.313043 CAACAAGCAGCCACCTCTTG 59.687 55.000 0.00 0.0 41.99 3.02 R
1982 2664 0.546598 AGAGGCCAGGAAAATACCCG 59.453 55.000 5.01 0.0 0.00 5.28 R
2988 10215 1.004277 AGCGCAAAGTAATTCAGGGGA 59.996 47.619 11.47 0.0 0.00 4.81 R
3752 16793 1.266989 GTTGTGTGGGCAGAAACTAGC 59.733 52.381 0.00 0.0 29.38 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.750352 CCCGTACCCAATAAGGTGTATAT 57.250 43.478 0.00 0.00 41.42 0.86
23 24 5.484715 CCCGTACCCAATAAGGTGTATATG 58.515 45.833 0.00 0.00 41.42 1.78
24 25 5.012354 CCCGTACCCAATAAGGTGTATATGT 59.988 44.000 0.00 0.00 41.42 2.29
25 26 5.929992 CCGTACCCAATAAGGTGTATATGTG 59.070 44.000 0.00 0.00 41.42 3.21
26 27 6.463331 CCGTACCCAATAAGGTGTATATGTGT 60.463 42.308 0.00 0.00 41.42 3.72
27 28 6.422701 CGTACCCAATAAGGTGTATATGTGTG 59.577 42.308 0.00 0.00 41.42 3.82
28 29 6.321821 ACCCAATAAGGTGTATATGTGTGT 57.678 37.500 0.00 0.00 39.24 3.72
29 30 6.119536 ACCCAATAAGGTGTATATGTGTGTG 58.880 40.000 0.00 0.00 39.24 3.82
30 31 6.119536 CCCAATAAGGTGTATATGTGTGTGT 58.880 40.000 0.00 0.00 34.66 3.72
31 32 6.601613 CCCAATAAGGTGTATATGTGTGTGTT 59.398 38.462 0.00 0.00 34.66 3.32
32 33 7.771361 CCCAATAAGGTGTATATGTGTGTGTTA 59.229 37.037 0.00 0.00 34.66 2.41
33 34 8.826710 CCAATAAGGTGTATATGTGTGTGTTAG 58.173 37.037 0.00 0.00 0.00 2.34
34 35 9.594478 CAATAAGGTGTATATGTGTGTGTTAGA 57.406 33.333 0.00 0.00 0.00 2.10
35 36 9.817809 AATAAGGTGTATATGTGTGTGTTAGAG 57.182 33.333 0.00 0.00 0.00 2.43
36 37 7.476540 AAGGTGTATATGTGTGTGTTAGAGA 57.523 36.000 0.00 0.00 0.00 3.10
37 38 7.101652 AGGTGTATATGTGTGTGTTAGAGAG 57.898 40.000 0.00 0.00 0.00 3.20
38 39 6.890268 AGGTGTATATGTGTGTGTTAGAGAGA 59.110 38.462 0.00 0.00 0.00 3.10
39 40 7.067615 AGGTGTATATGTGTGTGTTAGAGAGAG 59.932 40.741 0.00 0.00 0.00 3.20
40 41 7.067129 GGTGTATATGTGTGTGTTAGAGAGAGA 59.933 40.741 0.00 0.00 0.00 3.10
41 42 8.126074 GTGTATATGTGTGTGTTAGAGAGAGAG 58.874 40.741 0.00 0.00 0.00 3.20
42 43 6.707440 ATATGTGTGTGTTAGAGAGAGAGG 57.293 41.667 0.00 0.00 0.00 3.69
43 44 3.157881 TGTGTGTGTTAGAGAGAGAGGG 58.842 50.000 0.00 0.00 0.00 4.30
44 45 2.494073 GTGTGTGTTAGAGAGAGAGGGG 59.506 54.545 0.00 0.00 0.00 4.79
45 46 2.378886 TGTGTGTTAGAGAGAGAGGGGA 59.621 50.000 0.00 0.00 0.00 4.81
46 47 3.181422 TGTGTGTTAGAGAGAGAGGGGAA 60.181 47.826 0.00 0.00 0.00 3.97
47 48 3.445805 GTGTGTTAGAGAGAGAGGGGAAG 59.554 52.174 0.00 0.00 0.00 3.46
48 49 3.333980 TGTGTTAGAGAGAGAGGGGAAGA 59.666 47.826 0.00 0.00 0.00 2.87
49 50 3.951680 GTGTTAGAGAGAGAGGGGAAGAG 59.048 52.174 0.00 0.00 0.00 2.85
50 51 3.853181 TGTTAGAGAGAGAGGGGAAGAGA 59.147 47.826 0.00 0.00 0.00 3.10
51 52 4.080015 TGTTAGAGAGAGAGGGGAAGAGAG 60.080 50.000 0.00 0.00 0.00 3.20
52 53 1.852965 AGAGAGAGAGGGGAAGAGAGG 59.147 57.143 0.00 0.00 0.00 3.69
53 54 0.933700 AGAGAGAGGGGAAGAGAGGG 59.066 60.000 0.00 0.00 0.00 4.30
54 55 0.930726 GAGAGAGGGGAAGAGAGGGA 59.069 60.000 0.00 0.00 0.00 4.20
55 56 0.933700 AGAGAGGGGAAGAGAGGGAG 59.066 60.000 0.00 0.00 0.00 4.30
56 57 0.930726 GAGAGGGGAAGAGAGGGAGA 59.069 60.000 0.00 0.00 0.00 3.71
57 58 0.933700 AGAGGGGAAGAGAGGGAGAG 59.066 60.000 0.00 0.00 0.00 3.20
58 59 0.930726 GAGGGGAAGAGAGGGAGAGA 59.069 60.000 0.00 0.00 0.00 3.10
59 60 0.933700 AGGGGAAGAGAGGGAGAGAG 59.066 60.000 0.00 0.00 0.00 3.20
60 61 0.634465 GGGGAAGAGAGGGAGAGAGT 59.366 60.000 0.00 0.00 0.00 3.24
61 62 1.687996 GGGGAAGAGAGGGAGAGAGTG 60.688 61.905 0.00 0.00 0.00 3.51
62 63 1.286553 GGGAAGAGAGGGAGAGAGTGA 59.713 57.143 0.00 0.00 0.00 3.41
63 64 2.654863 GGAAGAGAGGGAGAGAGTGAG 58.345 57.143 0.00 0.00 0.00 3.51
64 65 2.654863 GAAGAGAGGGAGAGAGTGAGG 58.345 57.143 0.00 0.00 0.00 3.86
65 66 1.979809 AGAGAGGGAGAGAGTGAGGA 58.020 55.000 0.00 0.00 0.00 3.71
66 67 2.283834 AGAGAGGGAGAGAGTGAGGAA 58.716 52.381 0.00 0.00 0.00 3.36
67 68 2.242196 AGAGAGGGAGAGAGTGAGGAAG 59.758 54.545 0.00 0.00 0.00 3.46
68 69 2.241176 GAGAGGGAGAGAGTGAGGAAGA 59.759 54.545 0.00 0.00 0.00 2.87
69 70 2.242196 AGAGGGAGAGAGTGAGGAAGAG 59.758 54.545 0.00 0.00 0.00 2.85
70 71 1.287739 AGGGAGAGAGTGAGGAAGAGG 59.712 57.143 0.00 0.00 0.00 3.69
71 72 1.687996 GGGAGAGAGTGAGGAAGAGGG 60.688 61.905 0.00 0.00 0.00 4.30
72 73 1.286553 GGAGAGAGTGAGGAAGAGGGA 59.713 57.143 0.00 0.00 0.00 4.20
73 74 2.654863 GAGAGAGTGAGGAAGAGGGAG 58.345 57.143 0.00 0.00 0.00 4.30
74 75 1.287739 AGAGAGTGAGGAAGAGGGAGG 59.712 57.143 0.00 0.00 0.00 4.30
75 76 0.338120 AGAGTGAGGAAGAGGGAGGG 59.662 60.000 0.00 0.00 0.00 4.30
76 77 0.336737 GAGTGAGGAAGAGGGAGGGA 59.663 60.000 0.00 0.00 0.00 4.20
77 78 0.338120 AGTGAGGAAGAGGGAGGGAG 59.662 60.000 0.00 0.00 0.00 4.30
78 79 0.336737 GTGAGGAAGAGGGAGGGAGA 59.663 60.000 0.00 0.00 0.00 3.71
79 80 0.633921 TGAGGAAGAGGGAGGGAGAG 59.366 60.000 0.00 0.00 0.00 3.20
80 81 0.930726 GAGGAAGAGGGAGGGAGAGA 59.069 60.000 0.00 0.00 0.00 3.10
81 82 0.933700 AGGAAGAGGGAGGGAGAGAG 59.066 60.000 0.00 0.00 0.00 3.20
82 83 0.634465 GGAAGAGGGAGGGAGAGAGT 59.366 60.000 0.00 0.00 0.00 3.24
83 84 1.687996 GGAAGAGGGAGGGAGAGAGTG 60.688 61.905 0.00 0.00 0.00 3.51
84 85 1.006639 GAAGAGGGAGGGAGAGAGTGT 59.993 57.143 0.00 0.00 0.00 3.55
85 86 0.334676 AGAGGGAGGGAGAGAGTGTG 59.665 60.000 0.00 0.00 0.00 3.82
86 87 0.040499 GAGGGAGGGAGAGAGTGTGT 59.960 60.000 0.00 0.00 0.00 3.72
87 88 1.285373 GAGGGAGGGAGAGAGTGTGTA 59.715 57.143 0.00 0.00 0.00 2.90
88 89 1.933765 AGGGAGGGAGAGAGTGTGTAT 59.066 52.381 0.00 0.00 0.00 2.29
89 90 3.132056 AGGGAGGGAGAGAGTGTGTATA 58.868 50.000 0.00 0.00 0.00 1.47
90 91 3.730059 AGGGAGGGAGAGAGTGTGTATAT 59.270 47.826 0.00 0.00 0.00 0.86
91 92 3.829601 GGGAGGGAGAGAGTGTGTATATG 59.170 52.174 0.00 0.00 0.00 1.78
92 93 4.447908 GGGAGGGAGAGAGTGTGTATATGA 60.448 50.000 0.00 0.00 0.00 2.15
93 94 5.141182 GGAGGGAGAGAGTGTGTATATGAA 58.859 45.833 0.00 0.00 0.00 2.57
94 95 5.242838 GGAGGGAGAGAGTGTGTATATGAAG 59.757 48.000 0.00 0.00 0.00 3.02
95 96 6.019656 AGGGAGAGAGTGTGTATATGAAGA 57.980 41.667 0.00 0.00 0.00 2.87
96 97 6.619464 AGGGAGAGAGTGTGTATATGAAGAT 58.381 40.000 0.00 0.00 0.00 2.40
97 98 7.072562 AGGGAGAGAGTGTGTATATGAAGATT 58.927 38.462 0.00 0.00 0.00 2.40
98 99 7.566879 AGGGAGAGAGTGTGTATATGAAGATTT 59.433 37.037 0.00 0.00 0.00 2.17
99 100 7.655328 GGGAGAGAGTGTGTATATGAAGATTTG 59.345 40.741 0.00 0.00 0.00 2.32
100 101 8.417106 GGAGAGAGTGTGTATATGAAGATTTGA 58.583 37.037 0.00 0.00 0.00 2.69
101 102 9.979578 GAGAGAGTGTGTATATGAAGATTTGAT 57.020 33.333 0.00 0.00 0.00 2.57
102 103 9.761504 AGAGAGTGTGTATATGAAGATTTGATG 57.238 33.333 0.00 0.00 0.00 3.07
103 104 8.899427 AGAGTGTGTATATGAAGATTTGATGG 57.101 34.615 0.00 0.00 0.00 3.51
104 105 8.489489 AGAGTGTGTATATGAAGATTTGATGGT 58.511 33.333 0.00 0.00 0.00 3.55
105 106 9.764363 GAGTGTGTATATGAAGATTTGATGGTA 57.236 33.333 0.00 0.00 0.00 3.25
128 129 3.791973 AAAAACGCCAATGTCACTTGA 57.208 38.095 0.00 0.00 0.00 3.02
129 130 4.320608 AAAAACGCCAATGTCACTTGAT 57.679 36.364 0.00 0.00 0.00 2.57
130 131 5.446143 AAAAACGCCAATGTCACTTGATA 57.554 34.783 0.00 0.00 0.00 2.15
131 132 5.643379 AAAACGCCAATGTCACTTGATAT 57.357 34.783 0.00 0.00 0.00 1.63
132 133 4.621068 AACGCCAATGTCACTTGATATG 57.379 40.909 0.00 0.00 0.00 1.78
133 134 3.609853 ACGCCAATGTCACTTGATATGT 58.390 40.909 0.00 0.00 0.00 2.29
134 135 4.765273 ACGCCAATGTCACTTGATATGTA 58.235 39.130 0.00 0.00 0.00 2.29
135 136 5.368145 ACGCCAATGTCACTTGATATGTAT 58.632 37.500 0.00 0.00 0.00 2.29
136 137 5.237127 ACGCCAATGTCACTTGATATGTATG 59.763 40.000 0.00 0.00 0.00 2.39
137 138 5.466393 CGCCAATGTCACTTGATATGTATGA 59.534 40.000 0.00 0.00 0.00 2.15
138 139 6.347160 CGCCAATGTCACTTGATATGTATGAG 60.347 42.308 0.00 0.00 0.00 2.90
139 140 6.707608 GCCAATGTCACTTGATATGTATGAGA 59.292 38.462 0.00 0.00 0.00 3.27
140 141 7.227314 GCCAATGTCACTTGATATGTATGAGAA 59.773 37.037 0.00 0.00 0.00 2.87
141 142 9.281371 CCAATGTCACTTGATATGTATGAGAAT 57.719 33.333 0.00 0.00 0.00 2.40
175 176 5.477607 ACTTTTAAAGTTAATGTGGCCCC 57.522 39.130 4.30 0.00 39.04 5.80
176 177 4.021807 ACTTTTAAAGTTAATGTGGCCCCG 60.022 41.667 4.30 0.00 39.04 5.73
177 178 2.883122 TAAAGTTAATGTGGCCCCGT 57.117 45.000 0.00 0.00 0.00 5.28
178 179 2.003937 AAAGTTAATGTGGCCCCGTT 57.996 45.000 0.00 0.00 0.00 4.44
179 180 1.253100 AAGTTAATGTGGCCCCGTTG 58.747 50.000 0.00 0.00 0.00 4.10
180 181 1.214325 GTTAATGTGGCCCCGTTGC 59.786 57.895 0.00 0.00 0.00 4.17
181 182 1.228583 TTAATGTGGCCCCGTTGCA 60.229 52.632 0.00 0.00 0.00 4.08
182 183 0.827925 TTAATGTGGCCCCGTTGCAA 60.828 50.000 0.00 0.00 0.00 4.08
183 184 1.528292 TAATGTGGCCCCGTTGCAAC 61.528 55.000 19.89 19.89 35.65 4.17
246 249 0.320073 TAGACCGGTTTGGCTCAACG 60.320 55.000 9.42 0.00 43.94 4.10
291 301 3.785859 GATCCAGACCGCCCAGCA 61.786 66.667 0.00 0.00 0.00 4.41
346 361 1.830408 CGGCGATCCTCCCTTCTCT 60.830 63.158 0.00 0.00 0.00 3.10
348 363 1.745264 GCGATCCTCCCTTCTCTGG 59.255 63.158 0.00 0.00 0.00 3.86
490 505 0.178900 AGTTCCTCGTCCTCCCCTTT 60.179 55.000 0.00 0.00 0.00 3.11
508 871 3.242291 CCTGTAGATCCCCCGGGC 61.242 72.222 17.73 0.00 34.68 6.13
525 888 2.490217 CTACGCCAGAGGTCGTGG 59.510 66.667 13.16 8.26 36.50 4.94
591 954 4.227300 AGAATACCCACCAGTTTGCTATCA 59.773 41.667 0.00 0.00 0.00 2.15
673 1041 2.094182 GCTCAACGGTGTTATGGAGAGA 60.094 50.000 0.00 0.00 0.00 3.10
677 1045 3.870633 ACGGTGTTATGGAGAGAGTTC 57.129 47.619 0.00 0.00 0.00 3.01
686 1054 2.461695 TGGAGAGAGTTCTGATCCCAC 58.538 52.381 7.26 0.00 32.53 4.61
693 1061 4.163427 AGAGTTCTGATCCCACTTCAAGA 58.837 43.478 0.00 0.00 0.00 3.02
730 1105 6.368791 CCATGATCTTTTCTGTTTCTGTACGA 59.631 38.462 0.00 0.00 0.00 3.43
749 1124 2.352651 CGATATATGAATTGGGCAGCCG 59.647 50.000 5.00 0.00 0.00 5.52
787 1163 0.114364 ACTAGGCCAAACCCCCTTTG 59.886 55.000 5.01 0.00 40.58 2.77
797 1173 3.361977 CCCCTTTGGAACGCCACG 61.362 66.667 0.00 0.00 45.94 4.94
798 1174 3.361977 CCCTTTGGAACGCCACGG 61.362 66.667 0.00 0.00 45.94 4.94
826 1202 7.825270 TGTTCTGTTGTAGTTTGGAGAAGTTTA 59.175 33.333 0.00 0.00 0.00 2.01
862 1238 9.490379 GAGTGTAGACTGAATCTCCTTTTAAAA 57.510 33.333 0.00 0.00 39.04 1.52
955 1331 7.702772 CCAGCTTATATTATTCGAGCGTAGAAT 59.297 37.037 8.82 8.82 40.88 2.40
1102 1483 3.841845 TGGCCCTGTTATGTAGTTGTACT 59.158 43.478 0.00 0.00 0.00 2.73
1125 1506 8.788325 ACTTGTCCTGTTAATTATTGTACTCC 57.212 34.615 0.00 0.00 0.00 3.85
1126 1507 7.827729 ACTTGTCCTGTTAATTATTGTACTCCC 59.172 37.037 0.00 0.00 0.00 4.30
1127 1508 7.504926 TGTCCTGTTAATTATTGTACTCCCT 57.495 36.000 0.00 0.00 0.00 4.20
1128 1509 7.562135 TGTCCTGTTAATTATTGTACTCCCTC 58.438 38.462 0.00 0.00 0.00 4.30
1131 1512 6.407752 CCTGTTAATTATTGTACTCCCTCCGT 60.408 42.308 0.00 0.00 0.00 4.69
1132 1513 6.949715 TGTTAATTATTGTACTCCCTCCGTT 58.050 36.000 0.00 0.00 0.00 4.44
1133 1514 7.043565 TGTTAATTATTGTACTCCCTCCGTTC 58.956 38.462 0.00 0.00 0.00 3.95
1134 1515 4.684484 ATTATTGTACTCCCTCCGTTCC 57.316 45.455 0.00 0.00 0.00 3.62
1135 1516 2.249309 ATTGTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
1136 1517 2.905415 TTGTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
1137 1518 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
1138 1519 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
1139 1520 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
1140 1521 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
1141 1522 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
1142 1523 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
1143 1524 6.718454 TGTACTCCCTCCGTTCCTAAATATAG 59.282 42.308 0.00 0.00 0.00 1.31
1178 1559 9.179909 AGAGATTCTAATATGGACTACATACGG 57.820 37.037 0.00 0.00 44.41 4.02
1179 1560 9.175312 GAGATTCTAATATGGACTACATACGGA 57.825 37.037 0.00 0.00 44.41 4.69
1180 1561 9.179909 AGATTCTAATATGGACTACATACGGAG 57.820 37.037 0.00 0.00 44.41 4.63
1181 1562 6.754702 TCTAATATGGACTACATACGGAGC 57.245 41.667 0.00 0.00 44.41 4.70
1182 1563 6.243148 TCTAATATGGACTACATACGGAGCA 58.757 40.000 0.00 0.00 44.41 4.26
1183 1564 5.801531 AATATGGACTACATACGGAGCAA 57.198 39.130 0.00 0.00 44.41 3.91
1184 1565 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
1185 1566 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
1186 1567 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
1187 1568 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
1188 1569 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
1189 1570 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
1190 1571 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
1191 1572 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
1192 1573 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
1193 1574 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
1194 1575 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
1195 1576 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1196 1577 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1197 1578 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1198 1579 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1199 1580 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1200 1581 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1201 1582 5.412594 GGAGCAAAATGAGTGAATCTACACA 59.587 40.000 0.00 0.00 42.45 3.72
1202 1583 6.246420 AGCAAAATGAGTGAATCTACACAC 57.754 37.500 0.00 0.00 42.45 3.82
1204 1585 7.161404 AGCAAAATGAGTGAATCTACACACTA 58.839 34.615 0.00 0.00 45.54 2.74
1205 1586 7.332926 AGCAAAATGAGTGAATCTACACACTAG 59.667 37.037 0.00 0.00 45.54 2.57
1206 1587 7.331934 GCAAAATGAGTGAATCTACACACTAGA 59.668 37.037 0.00 0.00 45.54 2.43
1207 1588 9.208022 CAAAATGAGTGAATCTACACACTAGAA 57.792 33.333 0.00 0.00 45.54 2.10
1208 1589 9.950496 AAAATGAGTGAATCTACACACTAGAAT 57.050 29.630 0.00 0.00 45.54 2.40
1211 1592 8.575649 TGAGTGAATCTACACACTAGAATACA 57.424 34.615 0.00 0.00 45.54 2.29
1212 1593 9.190317 TGAGTGAATCTACACACTAGAATACAT 57.810 33.333 0.00 0.00 45.54 2.29
1213 1594 9.672086 GAGTGAATCTACACACTAGAATACATC 57.328 37.037 0.00 0.00 45.54 3.06
1214 1595 9.415008 AGTGAATCTACACACTAGAATACATCT 57.585 33.333 0.00 0.00 44.06 2.90
1235 1616 9.427821 ACATCTATATTCATCCCTATGTAGTCC 57.572 37.037 0.00 0.00 34.50 3.85
1236 1617 9.426534 CATCTATATTCATCCCTATGTAGTCCA 57.573 37.037 0.00 0.00 34.50 4.02
1242 1623 8.685257 ATTCATCCCTATGTAGTCCATATTCA 57.315 34.615 0.00 0.00 35.50 2.57
1243 1624 8.504811 TTCATCCCTATGTAGTCCATATTCAA 57.495 34.615 0.00 0.00 35.50 2.69
1244 1625 8.504811 TCATCCCTATGTAGTCCATATTCAAA 57.495 34.615 0.00 0.00 35.50 2.69
1245 1626 9.116080 TCATCCCTATGTAGTCCATATTCAAAT 57.884 33.333 0.00 0.00 35.50 2.32
1246 1627 9.388506 CATCCCTATGTAGTCCATATTCAAATC 57.611 37.037 0.00 0.00 35.50 2.17
1247 1628 8.742125 TCCCTATGTAGTCCATATTCAAATCT 57.258 34.615 0.00 0.00 35.50 2.40
1248 1629 8.816894 TCCCTATGTAGTCCATATTCAAATCTC 58.183 37.037 0.00 0.00 35.50 2.75
1249 1630 8.820831 CCCTATGTAGTCCATATTCAAATCTCT 58.179 37.037 0.00 0.00 35.50 3.10
1257 1638 9.995003 AGTCCATATTCAAATCTCTAGAATGAC 57.005 33.333 0.00 0.00 34.19 3.06
1258 1639 9.995003 GTCCATATTCAAATCTCTAGAATGACT 57.005 33.333 0.00 0.00 34.19 3.41
1276 1657 8.368668 AGAATGACTTATATTTAGGAACGGAGG 58.631 37.037 0.00 0.00 0.00 4.30
1277 1658 6.415206 TGACTTATATTTAGGAACGGAGGG 57.585 41.667 0.00 0.00 0.00 4.30
1278 1659 6.138263 TGACTTATATTTAGGAACGGAGGGA 58.862 40.000 0.00 0.00 0.00 4.20
1279 1660 6.267014 TGACTTATATTTAGGAACGGAGGGAG 59.733 42.308 0.00 0.00 0.00 4.30
1280 1661 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1281 1662 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1282 1663 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
1283 1664 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
1285 1666 8.912614 ATATTTAGGAACGGAGGGAGTATATT 57.087 34.615 0.00 0.00 0.00 1.28
1286 1667 6.415206 TTTAGGAACGGAGGGAGTATATTG 57.585 41.667 0.00 0.00 0.00 1.90
1287 1668 3.240302 AGGAACGGAGGGAGTATATTGG 58.760 50.000 0.00 0.00 0.00 3.16
1288 1669 3.116862 AGGAACGGAGGGAGTATATTGGA 60.117 47.826 0.00 0.00 0.00 3.53
1289 1670 3.838903 GGAACGGAGGGAGTATATTGGAT 59.161 47.826 0.00 0.00 0.00 3.41
1290 1671 4.322801 GGAACGGAGGGAGTATATTGGATG 60.323 50.000 0.00 0.00 0.00 3.51
1291 1672 4.127918 ACGGAGGGAGTATATTGGATGA 57.872 45.455 0.00 0.00 0.00 2.92
1292 1673 4.090090 ACGGAGGGAGTATATTGGATGAG 58.910 47.826 0.00 0.00 0.00 2.90
1293 1674 4.090090 CGGAGGGAGTATATTGGATGAGT 58.910 47.826 0.00 0.00 0.00 3.41
1294 1675 4.158764 CGGAGGGAGTATATTGGATGAGTC 59.841 50.000 0.00 0.00 0.00 3.36
1295 1676 4.158764 GGAGGGAGTATATTGGATGAGTCG 59.841 50.000 0.00 0.00 0.00 4.18
1296 1677 4.999310 AGGGAGTATATTGGATGAGTCGA 58.001 43.478 0.00 0.00 0.00 4.20
1297 1678 5.013547 AGGGAGTATATTGGATGAGTCGAG 58.986 45.833 0.00 0.00 0.00 4.04
1298 1679 4.381079 GGGAGTATATTGGATGAGTCGAGC 60.381 50.000 0.00 0.00 0.00 5.03
1303 1684 4.933064 GGATGAGTCGAGCGGGCG 62.933 72.222 0.00 0.00 0.00 6.13
1317 1698 3.287445 GGCGATGCCCACATGTTT 58.713 55.556 0.00 0.00 44.06 2.83
1318 1699 1.591183 GGCGATGCCCACATGTTTT 59.409 52.632 0.00 0.00 44.06 2.43
1323 1704 2.746904 CGATGCCCACATGTTTTACTGA 59.253 45.455 0.00 0.00 36.35 3.41
1325 1706 4.142403 CGATGCCCACATGTTTTACTGAAT 60.142 41.667 0.00 0.00 36.35 2.57
1330 1711 6.606796 TGCCCACATGTTTTACTGAATATCAT 59.393 34.615 0.00 0.00 0.00 2.45
1331 1712 6.919662 GCCCACATGTTTTACTGAATATCATG 59.080 38.462 0.00 0.00 37.68 3.07
1375 1756 6.743575 AAAAGTGATGCAGAATAGGTGTAC 57.256 37.500 0.00 0.00 0.00 2.90
1382 1763 5.690997 TGCAGAATAGGTGTACTCGATAG 57.309 43.478 0.00 0.00 0.00 2.08
1403 1784 1.024271 TTGTCAAGCTGAAGTGCACC 58.976 50.000 14.63 0.00 34.99 5.01
1404 1785 1.159713 TGTCAAGCTGAAGTGCACCG 61.160 55.000 14.63 0.65 34.99 4.94
1418 1799 5.560966 AGTGCACCGTTAAGATTTAATGG 57.439 39.130 14.63 15.05 39.03 3.16
1425 1806 9.821662 GCACCGTTAAGATTTAATGGATTATAC 57.178 33.333 20.89 5.42 37.12 1.47
1450 1845 9.825972 ACATTATATTTCAGTGTTTTTCTGTCG 57.174 29.630 0.00 0.00 34.86 4.35
1451 1846 8.788813 CATTATATTTCAGTGTTTTTCTGTCGC 58.211 33.333 0.00 0.00 34.86 5.19
1452 1847 4.630894 ATTTCAGTGTTTTTCTGTCGCA 57.369 36.364 0.00 0.00 34.86 5.10
1474 1869 9.039870 TCGCAGTTGTTTGAAAAATCAAATATT 57.960 25.926 7.21 0.00 41.01 1.28
1490 1885 6.233434 TCAAATATTTGTCTGTCTCTGTGCT 58.767 36.000 23.95 0.00 39.18 4.40
1491 1886 6.369890 TCAAATATTTGTCTGTCTCTGTGCTC 59.630 38.462 23.95 0.00 39.18 4.26
1492 1887 5.674052 ATATTTGTCTGTCTCTGTGCTCT 57.326 39.130 0.00 0.00 0.00 4.09
1493 1888 2.808523 TTGTCTGTCTCTGTGCTCTG 57.191 50.000 0.00 0.00 0.00 3.35
1494 1889 1.697284 TGTCTGTCTCTGTGCTCTGT 58.303 50.000 0.00 0.00 0.00 3.41
1495 1890 1.339291 TGTCTGTCTCTGTGCTCTGTG 59.661 52.381 0.00 0.00 0.00 3.66
1496 1891 0.316522 TCTGTCTCTGTGCTCTGTGC 59.683 55.000 0.00 0.00 43.25 4.57
1538 1933 3.686726 CCACTAGCACTGGATCTTGTTTC 59.313 47.826 0.00 0.00 0.00 2.78
1539 1934 4.318332 CACTAGCACTGGATCTTGTTTCA 58.682 43.478 0.00 0.00 0.00 2.69
1699 2095 5.046529 AGCATCTTATACTGCTTTCTGTCG 58.953 41.667 0.00 0.00 46.22 4.35
1723 2119 6.064846 ACAGCTTTTATGTCTGTTTGTCTG 57.935 37.500 0.00 0.00 37.78 3.51
1807 2205 5.179182 TCATGTGTGTTTGTGCTAGTGTATG 59.821 40.000 0.00 0.00 0.00 2.39
1844 2526 5.873712 AGTAGATTGTGACAGATGCTTCTTG 59.126 40.000 0.00 0.00 0.00 3.02
1848 2530 5.673337 TTGTGACAGATGCTTCTTGTAAC 57.327 39.130 0.00 6.17 0.00 2.50
1874 2556 9.035607 CGATAAATTTCAGCTATTGTACTGTCT 57.964 33.333 0.00 0.00 35.37 3.41
1878 2560 9.502091 AAATTTCAGCTATTGTACTGTCTGTAA 57.498 29.630 0.00 0.00 35.37 2.41
1879 2561 7.884816 TTTCAGCTATTGTACTGTCTGTAAC 57.115 36.000 0.00 0.00 35.37 2.50
1880 2562 6.835819 TCAGCTATTGTACTGTCTGTAACT 57.164 37.500 0.00 0.00 35.37 2.24
1881 2563 6.853720 TCAGCTATTGTACTGTCTGTAACTC 58.146 40.000 0.00 0.00 35.37 3.01
1882 2564 6.659668 TCAGCTATTGTACTGTCTGTAACTCT 59.340 38.462 0.00 0.00 35.37 3.24
1883 2565 6.970043 CAGCTATTGTACTGTCTGTAACTCTC 59.030 42.308 0.00 0.00 32.25 3.20
1884 2566 6.887545 AGCTATTGTACTGTCTGTAACTCTCT 59.112 38.462 0.00 0.00 32.25 3.10
1885 2567 8.047911 AGCTATTGTACTGTCTGTAACTCTCTA 58.952 37.037 0.00 0.00 32.25 2.43
1886 2568 8.842280 GCTATTGTACTGTCTGTAACTCTCTAT 58.158 37.037 0.00 0.00 32.25 1.98
1910 2592 2.239654 CCTGTTCCAGGCTCCATCTTAA 59.760 50.000 0.00 0.00 45.13 1.85
1921 2603 4.023365 GGCTCCATCTTAAGCTAGCATTTG 60.023 45.833 18.83 4.50 38.58 2.32
1940 2622 2.126596 TGTTGCTGCCCAGTGTTGG 61.127 57.895 0.00 0.00 44.60 3.77
1947 2629 2.513753 CTGCCCAGTGTTGGTGATTTA 58.486 47.619 0.00 0.00 43.40 1.40
1972 2654 8.894768 ATGATTCTAGCTCTTTAACGCTTTAT 57.105 30.769 0.00 0.00 37.68 1.40
1977 2659 4.723248 AGCTCTTTAACGCTTTATTGCAC 58.277 39.130 0.00 0.00 31.17 4.57
1979 2661 4.708601 CTCTTTAACGCTTTATTGCACGT 58.291 39.130 0.00 0.00 41.16 4.49
1982 2664 5.622041 TCTTTAACGCTTTATTGCACGTTTC 59.378 36.000 14.48 0.00 45.62 2.78
1983 2665 1.945207 ACGCTTTATTGCACGTTTCG 58.055 45.000 0.00 0.00 34.62 3.46
2007 2689 0.560688 TTTTCCTGGCCTCTTGGGTT 59.439 50.000 3.32 0.00 37.43 4.11
2016 2698 1.957113 GCCTCTTGGGTTCCCATTCAG 60.957 57.143 11.65 6.57 35.84 3.02
2034 2716 7.975616 CCCATTCAGTGTATTTGTTTTCTATGG 59.024 37.037 0.00 0.00 0.00 2.74
2036 2718 9.778993 CATTCAGTGTATTTGTTTTCTATGGAG 57.221 33.333 0.00 0.00 0.00 3.86
2047 2729 4.357918 TTTCTATGGAGGATGGCTAAGC 57.642 45.455 0.00 0.00 0.00 3.09
2055 2737 3.181450 GGAGGATGGCTAAGCATTGTAGT 60.181 47.826 0.00 0.00 0.00 2.73
2072 2754 6.726258 TTGTAGTTGCTCATACAATGACAG 57.274 37.500 4.71 0.00 37.06 3.51
2073 2755 6.036577 TGTAGTTGCTCATACAATGACAGA 57.963 37.500 0.00 0.00 35.06 3.41
2075 2757 5.411831 AGTTGCTCATACAATGACAGAGA 57.588 39.130 0.00 0.00 35.06 3.10
2109 2791 2.764010 TCCTCTTAAATCGCTACTGCCA 59.236 45.455 0.00 0.00 35.36 4.92
2118 2800 1.548719 TCGCTACTGCCAACTACATGT 59.451 47.619 2.69 2.69 35.36 3.21
2143 2825 4.440826 TTGTTGGCTAGGAGGTTTGTAA 57.559 40.909 0.00 0.00 0.00 2.41
2177 2859 4.751767 TTTTTCACACCCTGCTCATTTT 57.248 36.364 0.00 0.00 0.00 1.82
2280 2962 3.939066 AGGTTGTGTACAGAAGGTATGC 58.061 45.455 5.55 0.00 33.76 3.14
2300 2982 6.560253 ATGCTTTAGTAATAAGGAATGCCG 57.440 37.500 0.00 0.00 39.96 5.69
2398 3082 5.530171 CAGCCTCTATTTCTGCATGTGTATT 59.470 40.000 0.00 0.00 0.00 1.89
2419 3103 3.617284 TGATGCTGATGACAATGAGCTT 58.383 40.909 0.00 0.00 42.88 3.74
2483 3169 2.671396 CGCTATTTCGGCAGTGTAAGTT 59.329 45.455 0.00 0.00 0.00 2.66
2668 4698 7.765819 GGAGTTATATGCAAATTTTTCTTGCCT 59.234 33.333 5.19 0.00 46.98 4.75
2685 4715 4.454728 TGCCTGAGTTATGCCATTTTTC 57.545 40.909 0.00 0.00 0.00 2.29
2733 4764 2.289819 CCAATGGTGAAATTTGCAGGCT 60.290 45.455 0.00 0.00 0.00 4.58
2778 4809 2.847327 TTTCTGGTGAGCTTCAGGAG 57.153 50.000 11.14 1.05 0.00 3.69
2822 8333 4.848357 AGACTTATTGCTGCACAGGTATT 58.152 39.130 0.00 0.00 0.00 1.89
2853 8477 5.009710 TCCATGACTAGTTAAGAGCGTATGG 59.990 44.000 0.00 0.00 34.21 2.74
2904 10129 3.057526 TCATGTCTTGACTGTACCTCACG 60.058 47.826 2.35 0.00 0.00 4.35
2917 10142 4.768448 TGTACCTCACGTTTTCTCCTATGA 59.232 41.667 0.00 0.00 0.00 2.15
2924 10149 5.869344 TCACGTTTTCTCCTATGATTCAGTG 59.131 40.000 0.00 0.00 0.00 3.66
2935 10160 8.089625 TCCTATGATTCAGTGGAGTTCATTTA 57.910 34.615 6.38 0.00 32.89 1.40
2944 10169 7.112122 TCAGTGGAGTTCATTTATGTGCTTAT 58.888 34.615 0.00 0.00 0.00 1.73
2975 10202 7.275920 AGGATTAGCAACATCGTCTTCTAAAT 58.724 34.615 0.00 0.00 0.00 1.40
2979 10206 6.414408 AGCAACATCGTCTTCTAAATTCTG 57.586 37.500 0.00 0.00 0.00 3.02
2982 10209 7.041098 AGCAACATCGTCTTCTAAATTCTGTTT 60.041 33.333 0.00 0.00 0.00 2.83
2983 10210 7.059945 GCAACATCGTCTTCTAAATTCTGTTTG 59.940 37.037 0.00 0.00 0.00 2.93
2984 10211 6.603095 ACATCGTCTTCTAAATTCTGTTTGC 58.397 36.000 0.00 0.00 0.00 3.68
2988 10215 8.547967 TCGTCTTCTAAATTCTGTTTGCTTAT 57.452 30.769 0.00 0.00 0.00 1.73
2990 10217 7.905493 CGTCTTCTAAATTCTGTTTGCTTATCC 59.095 37.037 0.00 0.00 0.00 2.59
2992 10219 7.339466 TCTTCTAAATTCTGTTTGCTTATCCCC 59.661 37.037 0.00 0.00 0.00 4.81
3005 10232 4.644685 TGCTTATCCCCTGAATTACTTTGC 59.355 41.667 0.00 0.00 0.00 3.68
3048 10359 9.938670 TGTACAAAAATAAGAACACATGTACAC 57.061 29.630 10.39 0.00 43.87 2.90
3049 10360 9.938670 GTACAAAAATAAGAACACATGTACACA 57.061 29.630 0.00 0.00 40.76 3.72
3068 10380 4.869861 ACACAAGAAATTGCAAAACCTGTC 59.130 37.500 1.71 0.00 0.00 3.51
3181 10517 4.063689 CTGGCTCCATCAGTAACATCATC 58.936 47.826 0.00 0.00 0.00 2.92
3306 10650 6.150474 TCCATTTTCCCAAAGAAATACGACTC 59.850 38.462 0.00 0.00 43.93 3.36
3309 10653 3.178865 TCCCAAAGAAATACGACTCCCT 58.821 45.455 0.00 0.00 0.00 4.20
3478 14590 3.973206 TCTTGGTCTTAATTCGGCAGA 57.027 42.857 0.00 0.00 0.00 4.26
3502 14614 9.624373 AGAGCATTATCTTGTGTTTAATCAGAT 57.376 29.630 0.00 0.00 0.00 2.90
3646 15178 9.504708 TTGTTTTGCATGAATCCTAATGAAATT 57.495 25.926 0.00 0.00 41.28 1.82
3670 15353 5.069318 TGTTAGAATTTGAGTGCCATGTGA 58.931 37.500 0.00 0.00 0.00 3.58
3704 15539 2.204461 TGGGCGTTGGAGAGTTCGA 61.204 57.895 0.00 0.00 0.00 3.71
3735 15570 2.826738 AACACGCGGTTTGCCAGT 60.827 55.556 12.47 0.00 42.08 4.00
3862 17066 3.073086 AACTGCAGTTGCGTGTACA 57.927 47.368 30.66 0.00 45.83 2.90
4046 17340 7.777440 TGGCAACTATTGTTTGACCATATATGA 59.223 33.333 14.54 0.00 33.52 2.15
4075 17369 8.733458 AGTAGTTAATCACACACGACAACTATA 58.267 33.333 0.00 0.00 32.59 1.31
4114 17408 8.765219 GCGACAACTATCATAAATTAGACATGT 58.235 33.333 0.00 0.00 0.00 3.21
4133 17427 9.216117 AGACATGTCAACTATAGTTAACCAAAC 57.784 33.333 27.02 9.67 36.32 2.93
4185 17698 5.562635 ACATTTGTTGTCCCGGATAACTAA 58.437 37.500 23.11 21.67 35.28 2.24
4199 17714 4.262894 GGATAACTAAATCTGCCATCCCGA 60.263 45.833 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.422701 CACACATATACACCTTATTGGGTACG 59.577 42.308 0.00 0.00 41.11 3.67
3 4 7.225931 CACACACATATACACCTTATTGGGTAC 59.774 40.741 0.00 0.00 41.11 3.34
6 7 6.119536 ACACACACATATACACCTTATTGGG 58.880 40.000 0.00 0.00 41.11 4.12
8 9 9.594478 TCTAACACACACATATACACCTTATTG 57.406 33.333 0.00 0.00 0.00 1.90
9 10 9.817809 CTCTAACACACACATATACACCTTATT 57.182 33.333 0.00 0.00 0.00 1.40
12 13 7.396339 TCTCTCTAACACACACATATACACCTT 59.604 37.037 0.00 0.00 0.00 3.50
13 14 6.890268 TCTCTCTAACACACACATATACACCT 59.110 38.462 0.00 0.00 0.00 4.00
14 15 7.067129 TCTCTCTCTAACACACACATATACACC 59.933 40.741 0.00 0.00 0.00 4.16
15 16 7.986562 TCTCTCTCTAACACACACATATACAC 58.013 38.462 0.00 0.00 0.00 2.90
16 17 7.283354 CCTCTCTCTCTAACACACACATATACA 59.717 40.741 0.00 0.00 0.00 2.29
17 18 7.255312 CCCTCTCTCTCTAACACACACATATAC 60.255 44.444 0.00 0.00 0.00 1.47
18 19 6.773200 CCCTCTCTCTCTAACACACACATATA 59.227 42.308 0.00 0.00 0.00 0.86
19 20 5.596361 CCCTCTCTCTCTAACACACACATAT 59.404 44.000 0.00 0.00 0.00 1.78
20 21 4.950475 CCCTCTCTCTCTAACACACACATA 59.050 45.833 0.00 0.00 0.00 2.29
21 22 3.766591 CCCTCTCTCTCTAACACACACAT 59.233 47.826 0.00 0.00 0.00 3.21
22 23 3.157881 CCCTCTCTCTCTAACACACACA 58.842 50.000 0.00 0.00 0.00 3.72
23 24 2.494073 CCCCTCTCTCTCTAACACACAC 59.506 54.545 0.00 0.00 0.00 3.82
24 25 2.378886 TCCCCTCTCTCTCTAACACACA 59.621 50.000 0.00 0.00 0.00 3.72
25 26 3.088789 TCCCCTCTCTCTCTAACACAC 57.911 52.381 0.00 0.00 0.00 3.82
26 27 3.333980 TCTTCCCCTCTCTCTCTAACACA 59.666 47.826 0.00 0.00 0.00 3.72
27 28 3.951680 CTCTTCCCCTCTCTCTCTAACAC 59.048 52.174 0.00 0.00 0.00 3.32
28 29 3.853181 TCTCTTCCCCTCTCTCTCTAACA 59.147 47.826 0.00 0.00 0.00 2.41
29 30 4.461198 CTCTCTTCCCCTCTCTCTCTAAC 58.539 52.174 0.00 0.00 0.00 2.34
30 31 3.461831 CCTCTCTTCCCCTCTCTCTCTAA 59.538 52.174 0.00 0.00 0.00 2.10
31 32 3.053077 CCTCTCTTCCCCTCTCTCTCTA 58.947 54.545 0.00 0.00 0.00 2.43
32 33 1.852965 CCTCTCTTCCCCTCTCTCTCT 59.147 57.143 0.00 0.00 0.00 3.10
33 34 1.133482 CCCTCTCTTCCCCTCTCTCTC 60.133 61.905 0.00 0.00 0.00 3.20
34 35 0.933700 CCCTCTCTTCCCCTCTCTCT 59.066 60.000 0.00 0.00 0.00 3.10
35 36 0.930726 TCCCTCTCTTCCCCTCTCTC 59.069 60.000 0.00 0.00 0.00 3.20
36 37 0.933700 CTCCCTCTCTTCCCCTCTCT 59.066 60.000 0.00 0.00 0.00 3.10
37 38 0.930726 TCTCCCTCTCTTCCCCTCTC 59.069 60.000 0.00 0.00 0.00 3.20
38 39 0.933700 CTCTCCCTCTCTTCCCCTCT 59.066 60.000 0.00 0.00 0.00 3.69
39 40 0.930726 TCTCTCCCTCTCTTCCCCTC 59.069 60.000 0.00 0.00 0.00 4.30
40 41 0.933700 CTCTCTCCCTCTCTTCCCCT 59.066 60.000 0.00 0.00 0.00 4.79
41 42 0.634465 ACTCTCTCCCTCTCTTCCCC 59.366 60.000 0.00 0.00 0.00 4.81
42 43 1.286553 TCACTCTCTCCCTCTCTTCCC 59.713 57.143 0.00 0.00 0.00 3.97
43 44 2.654863 CTCACTCTCTCCCTCTCTTCC 58.345 57.143 0.00 0.00 0.00 3.46
44 45 2.241176 TCCTCACTCTCTCCCTCTCTTC 59.759 54.545 0.00 0.00 0.00 2.87
45 46 2.283834 TCCTCACTCTCTCCCTCTCTT 58.716 52.381 0.00 0.00 0.00 2.85
46 47 1.979809 TCCTCACTCTCTCCCTCTCT 58.020 55.000 0.00 0.00 0.00 3.10
47 48 2.241176 TCTTCCTCACTCTCTCCCTCTC 59.759 54.545 0.00 0.00 0.00 3.20
48 49 2.242196 CTCTTCCTCACTCTCTCCCTCT 59.758 54.545 0.00 0.00 0.00 3.69
49 50 2.654863 CTCTTCCTCACTCTCTCCCTC 58.345 57.143 0.00 0.00 0.00 4.30
50 51 1.287739 CCTCTTCCTCACTCTCTCCCT 59.712 57.143 0.00 0.00 0.00 4.20
51 52 1.687996 CCCTCTTCCTCACTCTCTCCC 60.688 61.905 0.00 0.00 0.00 4.30
52 53 1.286553 TCCCTCTTCCTCACTCTCTCC 59.713 57.143 0.00 0.00 0.00 3.71
53 54 2.654863 CTCCCTCTTCCTCACTCTCTC 58.345 57.143 0.00 0.00 0.00 3.20
54 55 1.287739 CCTCCCTCTTCCTCACTCTCT 59.712 57.143 0.00 0.00 0.00 3.10
55 56 1.687996 CCCTCCCTCTTCCTCACTCTC 60.688 61.905 0.00 0.00 0.00 3.20
56 57 0.338120 CCCTCCCTCTTCCTCACTCT 59.662 60.000 0.00 0.00 0.00 3.24
57 58 0.336737 TCCCTCCCTCTTCCTCACTC 59.663 60.000 0.00 0.00 0.00 3.51
58 59 0.338120 CTCCCTCCCTCTTCCTCACT 59.662 60.000 0.00 0.00 0.00 3.41
59 60 0.336737 TCTCCCTCCCTCTTCCTCAC 59.663 60.000 0.00 0.00 0.00 3.51
60 61 0.633921 CTCTCCCTCCCTCTTCCTCA 59.366 60.000 0.00 0.00 0.00 3.86
61 62 0.930726 TCTCTCCCTCCCTCTTCCTC 59.069 60.000 0.00 0.00 0.00 3.71
62 63 0.933700 CTCTCTCCCTCCCTCTTCCT 59.066 60.000 0.00 0.00 0.00 3.36
63 64 0.634465 ACTCTCTCCCTCCCTCTTCC 59.366 60.000 0.00 0.00 0.00 3.46
64 65 1.006639 ACACTCTCTCCCTCCCTCTTC 59.993 57.143 0.00 0.00 0.00 2.87
65 66 1.089123 ACACTCTCTCCCTCCCTCTT 58.911 55.000 0.00 0.00 0.00 2.85
66 67 0.334676 CACACTCTCTCCCTCCCTCT 59.665 60.000 0.00 0.00 0.00 3.69
67 68 0.040499 ACACACTCTCTCCCTCCCTC 59.960 60.000 0.00 0.00 0.00 4.30
68 69 1.383963 TACACACTCTCTCCCTCCCT 58.616 55.000 0.00 0.00 0.00 4.20
69 70 2.463047 ATACACACTCTCTCCCTCCC 57.537 55.000 0.00 0.00 0.00 4.30
70 71 4.730966 TCATATACACACTCTCTCCCTCC 58.269 47.826 0.00 0.00 0.00 4.30
71 72 6.065374 TCTTCATATACACACTCTCTCCCTC 58.935 44.000 0.00 0.00 0.00 4.30
72 73 6.019656 TCTTCATATACACACTCTCTCCCT 57.980 41.667 0.00 0.00 0.00 4.20
73 74 6.909550 ATCTTCATATACACACTCTCTCCC 57.090 41.667 0.00 0.00 0.00 4.30
74 75 8.417106 TCAAATCTTCATATACACACTCTCTCC 58.583 37.037 0.00 0.00 0.00 3.71
75 76 9.979578 ATCAAATCTTCATATACACACTCTCTC 57.020 33.333 0.00 0.00 0.00 3.20
76 77 9.761504 CATCAAATCTTCATATACACACTCTCT 57.238 33.333 0.00 0.00 0.00 3.10
77 78 8.986847 CCATCAAATCTTCATATACACACTCTC 58.013 37.037 0.00 0.00 0.00 3.20
78 79 8.489489 ACCATCAAATCTTCATATACACACTCT 58.511 33.333 0.00 0.00 0.00 3.24
79 80 8.668510 ACCATCAAATCTTCATATACACACTC 57.331 34.615 0.00 0.00 0.00 3.51
108 109 3.791973 TCAAGTGACATTGGCGTTTTT 57.208 38.095 0.00 0.00 0.00 1.94
109 110 5.048083 ACATATCAAGTGACATTGGCGTTTT 60.048 36.000 0.00 0.00 0.00 2.43
110 111 4.458989 ACATATCAAGTGACATTGGCGTTT 59.541 37.500 0.00 0.00 0.00 3.60
111 112 4.009675 ACATATCAAGTGACATTGGCGTT 58.990 39.130 0.00 0.00 0.00 4.84
112 113 3.609853 ACATATCAAGTGACATTGGCGT 58.390 40.909 0.00 0.00 0.00 5.68
113 114 5.466393 TCATACATATCAAGTGACATTGGCG 59.534 40.000 0.00 0.00 0.00 5.69
114 115 6.707608 TCTCATACATATCAAGTGACATTGGC 59.292 38.462 0.00 0.00 0.00 4.52
115 116 8.667076 TTCTCATACATATCAAGTGACATTGG 57.333 34.615 0.00 0.00 0.00 3.16
153 154 4.021807 CGGGGCCACATTAACTTTAAAAGT 60.022 41.667 5.46 0.00 45.46 2.66
154 155 4.021807 ACGGGGCCACATTAACTTTAAAAG 60.022 41.667 5.46 0.00 0.00 2.27
155 156 3.896272 ACGGGGCCACATTAACTTTAAAA 59.104 39.130 5.46 0.00 0.00 1.52
156 157 3.498334 ACGGGGCCACATTAACTTTAAA 58.502 40.909 5.46 0.00 0.00 1.52
157 158 3.157750 ACGGGGCCACATTAACTTTAA 57.842 42.857 5.46 0.00 0.00 1.52
158 159 2.820787 CAACGGGGCCACATTAACTTTA 59.179 45.455 5.46 0.00 0.00 1.85
159 160 1.616374 CAACGGGGCCACATTAACTTT 59.384 47.619 5.46 0.00 0.00 2.66
160 161 1.253100 CAACGGGGCCACATTAACTT 58.747 50.000 5.46 0.00 0.00 2.66
161 162 1.248101 GCAACGGGGCCACATTAACT 61.248 55.000 5.46 0.00 0.00 2.24
162 163 1.214325 GCAACGGGGCCACATTAAC 59.786 57.895 5.46 0.00 0.00 2.01
163 164 0.827925 TTGCAACGGGGCCACATTAA 60.828 50.000 5.46 0.00 0.00 1.40
164 165 1.228583 TTGCAACGGGGCCACATTA 60.229 52.632 5.46 0.00 0.00 1.90
165 166 2.522923 TTGCAACGGGGCCACATT 60.523 55.556 5.46 0.00 0.00 2.71
166 167 3.302344 GTTGCAACGGGGCCACAT 61.302 61.111 14.90 0.00 30.39 3.21
176 177 3.735894 GCATACGTGCGTTGCAAC 58.264 55.556 19.89 19.89 41.47 4.17
185 186 1.670811 GGGATCCTTGTTGCATACGTG 59.329 52.381 12.58 0.00 0.00 4.49
186 187 1.280710 TGGGATCCTTGTTGCATACGT 59.719 47.619 12.58 0.00 0.00 3.57
187 188 1.942657 CTGGGATCCTTGTTGCATACG 59.057 52.381 12.58 0.00 0.00 3.06
188 189 3.281727 TCTGGGATCCTTGTTGCATAC 57.718 47.619 12.58 0.00 0.00 2.39
195 196 1.697432 TCGTTGTTCTGGGATCCTTGT 59.303 47.619 12.58 0.00 0.00 3.16
196 197 2.472695 TCGTTGTTCTGGGATCCTTG 57.527 50.000 12.58 4.94 0.00 3.61
202 203 2.294074 CTGGTTTTCGTTGTTCTGGGA 58.706 47.619 0.00 0.00 0.00 4.37
407 422 3.591835 CGAGAGGAGGAGCGAGGC 61.592 72.222 0.00 0.00 0.00 4.70
455 470 1.139853 GAACTCACCATGGCTAGGGAG 59.860 57.143 13.04 13.23 32.83 4.30
490 505 2.612836 CCCGGGGGATCTACAGGA 59.387 66.667 14.71 0.00 37.50 3.86
508 871 2.490217 CCACGACCTCTGGCGTAG 59.510 66.667 0.00 0.00 34.79 3.51
514 877 1.032657 ACGAGATCCCACGACCTCTG 61.033 60.000 10.61 0.00 0.00 3.35
525 888 3.344904 TCCGAACGATAAACGAGATCC 57.655 47.619 0.00 0.00 45.77 3.36
532 895 2.497107 TCCGGATCCGAACGATAAAC 57.503 50.000 35.42 0.00 42.83 2.01
591 954 3.414269 CCTGGCTTGCAAATTCCAAATT 58.586 40.909 13.57 0.00 29.79 1.82
673 1041 4.263243 CCTTCTTGAAGTGGGATCAGAACT 60.263 45.833 9.21 0.00 0.00 3.01
677 1045 3.988976 TCCTTCTTGAAGTGGGATCAG 57.011 47.619 9.21 0.00 0.00 2.90
686 1054 2.559668 TGGCTGCAATTCCTTCTTGAAG 59.440 45.455 0.50 3.55 33.13 3.02
693 1061 3.028094 AGATCATGGCTGCAATTCCTT 57.972 42.857 0.50 0.00 0.00 3.36
730 1105 3.439857 ACGGCTGCCCAATTCATATAT 57.560 42.857 14.12 0.00 0.00 0.86
749 1124 0.605319 TCACAGAATCGGTGGGCAAC 60.605 55.000 13.18 0.00 36.90 4.17
787 1163 1.890510 AGAACAACCGTGGCGTTCC 60.891 57.895 14.75 2.49 39.89 3.62
797 1173 4.879545 TCTCCAAACTACAACAGAACAACC 59.120 41.667 0.00 0.00 0.00 3.77
798 1174 6.093633 ACTTCTCCAAACTACAACAGAACAAC 59.906 38.462 0.00 0.00 0.00 3.32
826 1202 8.491134 AGATTCAGTCTACACTCTACAGACTAT 58.509 37.037 3.34 0.00 45.56 2.12
862 1238 4.382291 TGTGGTACTGAAAAACGTAGCAT 58.618 39.130 4.89 0.00 43.36 3.79
988 1369 6.206634 TGTTCTGAAACCATGATACAGGAAAC 59.793 38.462 0.00 1.61 34.28 2.78
1102 1483 7.924541 AGGGAGTACAATAATTAACAGGACAA 58.075 34.615 0.00 0.00 0.00 3.18
1115 1496 3.393426 AGGAACGGAGGGAGTACAATA 57.607 47.619 0.00 0.00 0.00 1.90
1152 1533 9.179909 CCGTATGTAGTCCATATTAGAATCTCT 57.820 37.037 0.00 0.00 38.29 3.10
1153 1534 9.175312 TCCGTATGTAGTCCATATTAGAATCTC 57.825 37.037 0.00 0.00 38.29 2.75
1154 1535 9.179909 CTCCGTATGTAGTCCATATTAGAATCT 57.820 37.037 0.00 0.00 38.29 2.40
1155 1536 7.916450 GCTCCGTATGTAGTCCATATTAGAATC 59.084 40.741 0.00 0.00 38.29 2.52
1156 1537 7.396339 TGCTCCGTATGTAGTCCATATTAGAAT 59.604 37.037 0.00 0.00 38.29 2.40
1157 1538 6.717997 TGCTCCGTATGTAGTCCATATTAGAA 59.282 38.462 0.00 0.00 38.29 2.10
1158 1539 6.243148 TGCTCCGTATGTAGTCCATATTAGA 58.757 40.000 0.00 0.00 38.29 2.10
1159 1540 6.510879 TGCTCCGTATGTAGTCCATATTAG 57.489 41.667 0.00 0.00 38.29 1.73
1160 1541 6.904463 TTGCTCCGTATGTAGTCCATATTA 57.096 37.500 0.00 0.00 38.29 0.98
1161 1542 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
1162 1543 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
1163 1544 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
1164 1545 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
1165 1546 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
1166 1547 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
1167 1548 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
1168 1549 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
1169 1550 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
1170 1551 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
1171 1552 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
1172 1553 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
1173 1554 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1174 1555 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1175 1556 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1176 1557 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1177 1558 5.412594 TGTGTAGATTCACTCATTTTGCTCC 59.587 40.000 0.00 0.00 38.90 4.70
1178 1559 6.148480 AGTGTGTAGATTCACTCATTTTGCTC 59.852 38.462 0.00 0.00 40.28 4.26
1179 1560 6.000219 AGTGTGTAGATTCACTCATTTTGCT 59.000 36.000 0.00 0.00 40.28 3.91
1180 1561 6.246420 AGTGTGTAGATTCACTCATTTTGC 57.754 37.500 0.00 0.00 40.28 3.68
1181 1562 8.763049 TCTAGTGTGTAGATTCACTCATTTTG 57.237 34.615 1.08 0.00 42.77 2.44
1182 1563 9.950496 ATTCTAGTGTGTAGATTCACTCATTTT 57.050 29.630 1.08 0.00 42.77 1.82
1185 1566 9.190317 TGTATTCTAGTGTGTAGATTCACTCAT 57.810 33.333 1.08 0.00 42.77 2.90
1186 1567 8.575649 TGTATTCTAGTGTGTAGATTCACTCA 57.424 34.615 1.08 0.00 42.77 3.41
1187 1568 9.672086 GATGTATTCTAGTGTGTAGATTCACTC 57.328 37.037 1.08 0.00 42.77 3.51
1188 1569 9.415008 AGATGTATTCTAGTGTGTAGATTCACT 57.585 33.333 0.00 0.00 45.21 3.41
1209 1590 9.427821 GGACTACATAGGGATGAATATAGATGT 57.572 37.037 0.00 0.00 36.48 3.06
1210 1591 9.426534 TGGACTACATAGGGATGAATATAGATG 57.573 37.037 0.00 0.00 36.48 2.90
1216 1597 9.782900 TGAATATGGACTACATAGGGATGAATA 57.217 33.333 0.00 0.00 44.79 1.75
1217 1598 8.685257 TGAATATGGACTACATAGGGATGAAT 57.315 34.615 0.00 0.00 44.79 2.57
1218 1599 8.504811 TTGAATATGGACTACATAGGGATGAA 57.495 34.615 0.00 0.00 44.79 2.57
1219 1600 8.504811 TTTGAATATGGACTACATAGGGATGA 57.495 34.615 0.00 0.00 44.79 2.92
1220 1601 9.388506 GATTTGAATATGGACTACATAGGGATG 57.611 37.037 0.00 0.00 44.79 3.51
1221 1602 9.343994 AGATTTGAATATGGACTACATAGGGAT 57.656 33.333 0.00 0.00 44.79 3.85
1222 1603 8.742125 AGATTTGAATATGGACTACATAGGGA 57.258 34.615 0.00 0.00 44.79 4.20
1223 1604 8.820831 AGAGATTTGAATATGGACTACATAGGG 58.179 37.037 0.00 0.00 44.79 3.53
1231 1612 9.995003 GTCATTCTAGAGATTTGAATATGGACT 57.005 33.333 0.00 0.00 31.40 3.85
1232 1613 9.995003 AGTCATTCTAGAGATTTGAATATGGAC 57.005 33.333 0.00 0.00 31.40 4.02
1250 1631 8.368668 CCTCCGTTCCTAAATATAAGTCATTCT 58.631 37.037 0.00 0.00 0.00 2.40
1251 1632 7.603024 CCCTCCGTTCCTAAATATAAGTCATTC 59.397 40.741 0.00 0.00 0.00 2.67
1252 1633 7.291651 TCCCTCCGTTCCTAAATATAAGTCATT 59.708 37.037 0.00 0.00 0.00 2.57
1253 1634 6.785963 TCCCTCCGTTCCTAAATATAAGTCAT 59.214 38.462 0.00 0.00 0.00 3.06
1254 1635 6.138263 TCCCTCCGTTCCTAAATATAAGTCA 58.862 40.000 0.00 0.00 0.00 3.41
1255 1636 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1256 1637 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1257 1638 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1260 1641 8.759782 CAATATACTCCCTCCGTTCCTAAATAT 58.240 37.037 0.00 0.00 0.00 1.28
1261 1642 7.179694 CCAATATACTCCCTCCGTTCCTAAATA 59.820 40.741 0.00 0.00 0.00 1.40
1262 1643 6.013639 CCAATATACTCCCTCCGTTCCTAAAT 60.014 42.308 0.00 0.00 0.00 1.40
1263 1644 5.306160 CCAATATACTCCCTCCGTTCCTAAA 59.694 44.000 0.00 0.00 0.00 1.85
1264 1645 4.836736 CCAATATACTCCCTCCGTTCCTAA 59.163 45.833 0.00 0.00 0.00 2.69
1265 1646 4.106825 TCCAATATACTCCCTCCGTTCCTA 59.893 45.833 0.00 0.00 0.00 2.94
1266 1647 3.116862 TCCAATATACTCCCTCCGTTCCT 60.117 47.826 0.00 0.00 0.00 3.36
1267 1648 3.236896 TCCAATATACTCCCTCCGTTCC 58.763 50.000 0.00 0.00 0.00 3.62
1268 1649 4.527038 TCATCCAATATACTCCCTCCGTTC 59.473 45.833 0.00 0.00 0.00 3.95
1269 1650 4.489737 TCATCCAATATACTCCCTCCGTT 58.510 43.478 0.00 0.00 0.00 4.44
1270 1651 4.090090 CTCATCCAATATACTCCCTCCGT 58.910 47.826 0.00 0.00 0.00 4.69
1271 1652 4.090090 ACTCATCCAATATACTCCCTCCG 58.910 47.826 0.00 0.00 0.00 4.63
1272 1653 4.158764 CGACTCATCCAATATACTCCCTCC 59.841 50.000 0.00 0.00 0.00 4.30
1273 1654 5.010933 TCGACTCATCCAATATACTCCCTC 58.989 45.833 0.00 0.00 0.00 4.30
1274 1655 4.999310 TCGACTCATCCAATATACTCCCT 58.001 43.478 0.00 0.00 0.00 4.20
1275 1656 4.381079 GCTCGACTCATCCAATATACTCCC 60.381 50.000 0.00 0.00 0.00 4.30
1276 1657 4.673061 CGCTCGACTCATCCAATATACTCC 60.673 50.000 0.00 0.00 0.00 3.85
1277 1658 4.407818 CGCTCGACTCATCCAATATACTC 58.592 47.826 0.00 0.00 0.00 2.59
1278 1659 3.191581 CCGCTCGACTCATCCAATATACT 59.808 47.826 0.00 0.00 0.00 2.12
1279 1660 3.502920 CCGCTCGACTCATCCAATATAC 58.497 50.000 0.00 0.00 0.00 1.47
1280 1661 2.492088 CCCGCTCGACTCATCCAATATA 59.508 50.000 0.00 0.00 0.00 0.86
1281 1662 1.273606 CCCGCTCGACTCATCCAATAT 59.726 52.381 0.00 0.00 0.00 1.28
1282 1663 0.673985 CCCGCTCGACTCATCCAATA 59.326 55.000 0.00 0.00 0.00 1.90
1283 1664 1.443407 CCCGCTCGACTCATCCAAT 59.557 57.895 0.00 0.00 0.00 3.16
1284 1665 2.892640 CCCGCTCGACTCATCCAA 59.107 61.111 0.00 0.00 0.00 3.53
1285 1666 3.838271 GCCCGCTCGACTCATCCA 61.838 66.667 0.00 0.00 0.00 3.41
1286 1667 4.933064 CGCCCGCTCGACTCATCC 62.933 72.222 0.00 0.00 0.00 3.51
1287 1668 3.200887 ATCGCCCGCTCGACTCATC 62.201 63.158 0.00 0.00 41.62 2.92
1288 1669 3.219928 ATCGCCCGCTCGACTCAT 61.220 61.111 0.00 0.00 41.62 2.90
1289 1670 4.193334 CATCGCCCGCTCGACTCA 62.193 66.667 0.00 0.00 41.62 3.41
1303 1684 4.782019 TTCAGTAAAACATGTGGGCATC 57.218 40.909 0.00 0.00 31.99 3.91
1317 1698 8.862325 ACCACACTTTTCATGATATTCAGTAA 57.138 30.769 0.00 0.00 0.00 2.24
1318 1699 8.862325 AACCACACTTTTCATGATATTCAGTA 57.138 30.769 0.00 0.00 0.00 2.74
1369 1750 4.326548 GCTTGACAAACTATCGAGTACACC 59.673 45.833 0.00 0.00 33.58 4.16
1375 1756 4.926238 ACTTCAGCTTGACAAACTATCGAG 59.074 41.667 0.00 0.00 0.00 4.04
1382 1763 2.454055 GTGCACTTCAGCTTGACAAAC 58.546 47.619 10.32 0.00 34.99 2.93
1425 1806 8.788813 GCGACAGAAAAACACTGAAATATAATG 58.211 33.333 0.00 0.00 38.55 1.90
1427 1808 7.866729 TGCGACAGAAAAACACTGAAATATAA 58.133 30.769 0.00 0.00 38.55 0.98
1428 1809 7.172532 ACTGCGACAGAAAAACACTGAAATATA 59.827 33.333 12.77 0.00 38.55 0.86
1433 1828 3.006940 ACTGCGACAGAAAAACACTGAA 58.993 40.909 12.77 0.00 38.55 3.02
1434 1829 2.627945 ACTGCGACAGAAAAACACTGA 58.372 42.857 12.77 0.00 38.55 3.41
1474 1869 2.034878 ACAGAGCACAGAGACAGACAA 58.965 47.619 0.00 0.00 0.00 3.18
1490 1885 1.071987 CAGCCACCTCTTGCACAGA 59.928 57.895 0.00 0.00 0.00 3.41
1491 1886 2.623915 GCAGCCACCTCTTGCACAG 61.624 63.158 0.00 0.00 0.00 3.66
1492 1887 2.595463 GCAGCCACCTCTTGCACA 60.595 61.111 0.00 0.00 0.00 4.57
1493 1888 1.900498 AAGCAGCCACCTCTTGCAC 60.900 57.895 0.00 0.00 0.00 4.57
1494 1889 1.900016 CAAGCAGCCACCTCTTGCA 60.900 57.895 0.00 0.00 32.07 4.08
1495 1890 1.458639 AACAAGCAGCCACCTCTTGC 61.459 55.000 0.00 0.00 40.45 4.01
1496 1891 0.313043 CAACAAGCAGCCACCTCTTG 59.687 55.000 0.00 0.00 41.99 3.02
1497 1892 1.458639 GCAACAAGCAGCCACCTCTT 61.459 55.000 0.00 0.00 44.79 2.85
1498 1893 1.900498 GCAACAAGCAGCCACCTCT 60.900 57.895 0.00 0.00 44.79 3.69
1499 1894 2.647297 GCAACAAGCAGCCACCTC 59.353 61.111 0.00 0.00 44.79 3.85
1539 1934 6.365520 AGGAAAATTAAGTGACAGTGAACCT 58.634 36.000 0.00 0.00 0.00 3.50
1551 1946 7.013369 ACGCAGAGAAGAAAAGGAAAATTAAGT 59.987 33.333 0.00 0.00 0.00 2.24
1557 1952 4.451900 AGACGCAGAGAAGAAAAGGAAAA 58.548 39.130 0.00 0.00 0.00 2.29
1699 2095 6.138761 CAGACAAACAGACATAAAAGCTGTC 58.861 40.000 0.00 0.00 41.65 3.51
1723 2119 6.475402 ACTTGCAAGTTGTTTAATTAGCACAC 59.525 34.615 26.36 0.50 35.21 3.82
1783 2181 3.540617 ACACTAGCACAAACACACATGA 58.459 40.909 0.00 0.00 0.00 3.07
1784 2182 3.969117 ACACTAGCACAAACACACATG 57.031 42.857 0.00 0.00 0.00 3.21
1827 2509 3.740832 CGTTACAAGAAGCATCTGTCACA 59.259 43.478 0.00 0.00 35.59 3.58
1848 2530 9.035607 AGACAGTACAATAGCTGAAATTTATCG 57.964 33.333 0.00 0.00 36.62 2.92
1874 2556 5.330233 TGGAACAGGTCATAGAGAGTTACA 58.670 41.667 0.00 0.00 0.00 2.41
1875 2557 5.916661 TGGAACAGGTCATAGAGAGTTAC 57.083 43.478 0.00 0.00 0.00 2.50
1899 2581 4.578105 ACAAATGCTAGCTTAAGATGGAGC 59.422 41.667 17.23 8.34 39.17 4.70
1904 2586 5.644644 GCAACACAAATGCTAGCTTAAGAT 58.355 37.500 17.23 1.53 40.64 2.40
1921 2603 1.066257 CAACACTGGGCAGCAACAC 59.934 57.895 0.00 0.00 0.00 3.32
1947 2629 8.894768 ATAAAGCGTTAAAGAGCTAGAATCAT 57.105 30.769 0.00 0.00 43.78 2.45
1972 2654 2.030981 GGAAAATACCCGAAACGTGCAA 60.031 45.455 0.00 0.00 0.00 4.08
1977 2659 1.131693 GCCAGGAAAATACCCGAAACG 59.868 52.381 0.00 0.00 0.00 3.60
1979 2661 1.356398 AGGCCAGGAAAATACCCGAAA 59.644 47.619 5.01 0.00 0.00 3.46
1982 2664 0.546598 AGAGGCCAGGAAAATACCCG 59.453 55.000 5.01 0.00 0.00 5.28
1983 2665 2.379005 CAAGAGGCCAGGAAAATACCC 58.621 52.381 5.01 0.00 0.00 3.69
2007 2689 8.739039 CATAGAAAACAAATACACTGAATGGGA 58.261 33.333 0.00 0.00 0.00 4.37
2016 2698 7.682021 GCCATCCTCCATAGAAAACAAATACAC 60.682 40.741 0.00 0.00 0.00 2.90
2034 2716 4.078639 ACTACAATGCTTAGCCATCCTC 57.921 45.455 0.29 0.00 0.00 3.71
2036 2718 3.243201 GCAACTACAATGCTTAGCCATCC 60.243 47.826 0.29 0.00 40.64 3.51
2055 2737 7.692460 AAAATCTCTGTCATTGTATGAGCAA 57.308 32.000 0.00 0.00 40.53 3.91
2160 2842 2.655090 TCAAAATGAGCAGGGTGTGA 57.345 45.000 0.00 0.00 0.00 3.58
2169 2851 3.191371 ACGGATGACCTTTCAAAATGAGC 59.809 43.478 0.00 0.00 34.61 4.26
2177 2859 0.976641 AGCTCACGGATGACCTTTCA 59.023 50.000 0.00 0.00 35.73 2.69
2280 2962 7.280205 ACTCAACGGCATTCCTTATTACTAAAG 59.720 37.037 0.00 0.00 0.00 1.85
2300 2982 6.545504 TCTTGCAAACAGAATAGACTCAAC 57.454 37.500 0.00 0.00 0.00 3.18
2362 3046 2.109229 AGAGGCTGGCATACCTGTAT 57.891 50.000 13.46 0.00 36.05 2.29
2398 3082 3.277142 AGCTCATTGTCATCAGCATCA 57.723 42.857 0.00 0.00 0.00 3.07
2419 3103 8.827832 AATGATGGATAATTTCAAGGACTTCA 57.172 30.769 0.00 0.00 0.00 3.02
2554 4578 1.600957 CAAATCCAGCTCGCATACCTG 59.399 52.381 0.00 0.00 0.00 4.00
2656 4686 4.527816 TGGCATAACTCAGGCAAGAAAAAT 59.472 37.500 0.00 0.00 37.37 1.82
2668 4698 6.003326 TGACTCAGAAAAATGGCATAACTCA 58.997 36.000 0.00 0.00 0.00 3.41
2733 4764 7.052248 TGAGAATCTCATCCAGTACGTAGTAA 58.948 38.462 9.18 0.00 39.27 2.24
2778 4809 5.180117 TCTTGCAACATTCTTCTTGCTAGAC 59.820 40.000 10.96 0.00 44.72 2.59
2822 8333 7.491372 CGCTCTTAACTAGTCATGGAAATGTAA 59.509 37.037 0.00 0.00 0.00 2.41
2853 8477 9.140286 GAACAGAAAGATTTTAATACCCAAAGC 57.860 33.333 0.00 0.00 0.00 3.51
2904 10129 6.410540 ACTCCACTGAATCATAGGAGAAAAC 58.589 40.000 27.14 0.00 46.89 2.43
2917 10142 5.948162 AGCACATAAATGAACTCCACTGAAT 59.052 36.000 0.00 0.00 0.00 2.57
2944 10169 9.856488 GAAGACGATGTTGCTAATCCTAATATA 57.144 33.333 0.00 0.00 0.00 0.86
2959 10186 7.041098 AGCAAACAGAATTTAGAAGACGATGTT 60.041 33.333 0.00 0.00 0.00 2.71
2960 10187 6.428159 AGCAAACAGAATTTAGAAGACGATGT 59.572 34.615 0.00 0.00 0.00 3.06
2961 10188 6.835914 AGCAAACAGAATTTAGAAGACGATG 58.164 36.000 0.00 0.00 0.00 3.84
2975 10202 4.380843 TTCAGGGGATAAGCAAACAGAA 57.619 40.909 0.00 0.00 0.00 3.02
2979 10206 6.775594 AAGTAATTCAGGGGATAAGCAAAC 57.224 37.500 0.00 0.00 0.00 2.93
2982 10209 4.644685 GCAAAGTAATTCAGGGGATAAGCA 59.355 41.667 0.00 0.00 0.00 3.91
2983 10210 4.261197 CGCAAAGTAATTCAGGGGATAAGC 60.261 45.833 0.00 0.00 0.00 3.09
2984 10211 4.261197 GCGCAAAGTAATTCAGGGGATAAG 60.261 45.833 0.30 0.00 0.00 1.73
2988 10215 1.004277 AGCGCAAAGTAATTCAGGGGA 59.996 47.619 11.47 0.00 0.00 4.81
2990 10217 2.159379 GGAAGCGCAAAGTAATTCAGGG 60.159 50.000 11.47 0.00 0.00 4.45
2992 10219 3.829886 TGGAAGCGCAAAGTAATTCAG 57.170 42.857 11.47 0.00 0.00 3.02
3005 10232 5.705813 TGTACAAACGTATATTGGAAGCG 57.294 39.130 0.00 0.00 32.02 4.68
3035 10346 5.976534 TGCAATTTCTTGTGTACATGTGTTC 59.023 36.000 9.11 0.00 34.69 3.18
3041 10352 6.479660 CAGGTTTTGCAATTTCTTGTGTACAT 59.520 34.615 0.00 0.00 34.69 2.29
3048 10359 5.006941 CCAAGACAGGTTTTGCAATTTCTTG 59.993 40.000 15.18 15.18 38.84 3.02
3049 10360 5.104982 TCCAAGACAGGTTTTGCAATTTCTT 60.105 36.000 0.00 0.00 0.00 2.52
3068 10380 3.399440 ACTTCTCAAGAGCAGTCCAAG 57.601 47.619 0.00 0.00 28.91 3.61
3309 10653 1.361204 TCTGAACAGGCCTGAATCCA 58.639 50.000 39.19 25.19 0.00 3.41
3344 11655 4.202192 TGCAAAGGAACACATGCATTGTAA 60.202 37.500 12.78 0.00 43.32 2.41
3502 14614 3.069980 GCACGGCCACAACAACCAA 62.070 57.895 2.24 0.00 0.00 3.67
3571 14683 2.027314 TGCAAACATGCCACACGC 59.973 55.556 0.00 0.00 38.31 5.34
3646 15178 5.534278 TCACATGGCACTCAAATTCTAACAA 59.466 36.000 0.00 0.00 0.00 2.83
3670 15353 1.758936 CCCACACACATGATGATGCT 58.241 50.000 0.00 0.00 32.14 3.79
3752 16793 1.266989 GTTGTGTGGGCAGAAACTAGC 59.733 52.381 0.00 0.00 29.38 3.42
3857 17061 4.998672 GTGTTTACCTAGTTGCCATGTACA 59.001 41.667 0.00 0.00 0.00 2.90
3862 17066 4.093472 TGTGTGTTTACCTAGTTGCCAT 57.907 40.909 0.00 0.00 0.00 4.40
3929 17134 2.621055 GTGTGTTTATCTGGTTGCCACA 59.379 45.455 0.00 0.00 0.00 4.17
4001 17295 3.818773 GCCATGTGTGTTTACCTAGTTGT 59.181 43.478 0.00 0.00 0.00 3.32
4046 17340 5.593968 TGTCGTGTGTGATTAACTACTTGT 58.406 37.500 0.00 0.00 0.00 3.16
4075 17369 3.128349 AGTTGTCGCGTGTAATCAAACT 58.872 40.909 5.77 3.14 0.00 2.66
4114 17408 8.197592 TCTCTGGTTTGGTTAACTATAGTTGA 57.802 34.615 25.27 16.23 38.90 3.18
4133 17427 3.331478 AAGCATGTCAACTCTCTCTGG 57.669 47.619 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.