Multiple sequence alignment - TraesCS5D01G428900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G428900 chr5D 100.000 4148 0 0 1 4148 486253923 486249776 0.000000e+00 7661.0
1 TraesCS5D01G428900 chr5D 83.871 155 19 6 333 484 43961272 43961423 4.320000e-30 143.0
2 TraesCS5D01G428900 chr5D 85.507 69 8 2 345 412 43957873 43957940 2.070000e-08 71.3
3 TraesCS5D01G428900 chr5D 86.885 61 6 2 39 98 43960981 43961040 2.680000e-07 67.6
4 TraesCS5D01G428900 chr5B 88.498 4147 391 55 31 4148 597302890 597298801 0.000000e+00 4937.0
5 TraesCS5D01G428900 chr5B 86.885 61 6 2 39 98 41905964 41906023 2.680000e-07 67.6
6 TraesCS5D01G428900 chr7B 74.949 491 109 13 214 697 743709956 743710439 3.250000e-51 213.0
7 TraesCS5D01G428900 chr5A 86.885 61 6 2 39 98 33927252 33927311 2.680000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G428900 chr5D 486249776 486253923 4147 True 7661 7661 100.000 1 4148 1 chr5D.!!$R1 4147
1 TraesCS5D01G428900 chr5B 597298801 597302890 4089 True 4937 4937 88.498 31 4148 1 chr5B.!!$R1 4117

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
696 697 0.035056 AGAAGGGAAGATGTTGCCCG 60.035 55.0 9.68 0.0 45.31 6.13 F
764 765 0.037326 GGAAGATGCGTGGTCACTGA 60.037 55.0 0.00 0.0 0.00 3.41 F
1716 1732 0.037605 CAAGTCCACGGACCCTACAC 60.038 60.0 12.66 0.0 45.59 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2670 2689 0.036732 ATCGTCTCAAAGCCCTTGCA 59.963 50.0 0.0 0.0 41.13 4.08 R
2694 2713 0.110373 GGTTTTGAGCCGCAGTAACG 60.110 55.0 0.0 0.0 0.00 3.18 R
3464 3483 0.389817 TTGCCGACTCACTGGATTCG 60.390 55.0 0.0 0.0 43.45 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.056628 GAGGTCCATCAGCAACTCG 57.943 57.895 0.00 0.00 0.00 4.18
19 20 0.247736 GAGGTCCATCAGCAACTCGT 59.752 55.000 0.00 0.00 0.00 4.18
20 21 0.036952 AGGTCCATCAGCAACTCGTG 60.037 55.000 0.00 0.00 0.00 4.35
21 22 0.320771 GGTCCATCAGCAACTCGTGT 60.321 55.000 0.00 0.00 0.00 4.49
22 23 1.071605 GTCCATCAGCAACTCGTGTC 58.928 55.000 0.00 0.00 0.00 3.67
23 24 0.388520 TCCATCAGCAACTCGTGTCG 60.389 55.000 0.00 0.00 0.00 4.35
24 25 0.667487 CCATCAGCAACTCGTGTCGT 60.667 55.000 0.00 0.00 0.00 4.34
25 26 0.436150 CATCAGCAACTCGTGTCGTG 59.564 55.000 0.00 0.00 0.00 4.35
26 27 1.284982 ATCAGCAACTCGTGTCGTGC 61.285 55.000 6.24 6.24 0.00 5.34
27 28 3.030308 AGCAACTCGTGTCGTGCG 61.030 61.111 8.23 0.00 0.00 5.34
28 29 4.059459 GCAACTCGTGTCGTGCGG 62.059 66.667 0.00 0.00 0.00 5.69
29 30 4.059459 CAACTCGTGTCGTGCGGC 62.059 66.667 0.00 0.00 0.00 6.53
36 37 1.437573 GTGTCGTGCGGCGTTTTAC 60.438 57.895 9.37 3.14 42.13 2.01
37 38 1.592131 TGTCGTGCGGCGTTTTACT 60.592 52.632 9.37 0.00 42.13 2.24
47 48 2.152016 GGCGTTTTACTCCTTTGCTCT 58.848 47.619 0.00 0.00 0.00 4.09
52 53 4.611581 CGTTTTACTCCTTTGCTCTTCTGC 60.612 45.833 0.00 0.00 0.00 4.26
54 55 2.875094 ACTCCTTTGCTCTTCTGCAT 57.125 45.000 0.00 0.00 42.96 3.96
66 67 4.514816 GCTCTTCTGCATAAGGAATCCTTC 59.485 45.833 19.11 5.00 43.57 3.46
68 69 3.475566 TCTGCATAAGGAATCCTTCGG 57.524 47.619 19.11 12.66 43.57 4.30
69 70 2.771943 TCTGCATAAGGAATCCTTCGGT 59.228 45.455 19.11 3.25 43.57 4.69
75 76 1.001393 GGAATCCTTCGGTTGCCCA 60.001 57.895 0.00 0.00 0.00 5.36
91 92 4.465512 CACGACATTGGCAGCCGC 62.466 66.667 7.03 0.00 37.44 6.53
107 108 4.868195 GCATCAAGGCGTTGAACC 57.132 55.556 24.17 14.53 45.88 3.62
108 109 1.956043 GCATCAAGGCGTTGAACCA 59.044 52.632 24.17 3.37 45.88 3.67
111 112 1.466167 CATCAAGGCGTTGAACCAGAG 59.534 52.381 24.17 7.96 45.88 3.35
120 121 1.200948 GTTGAACCAGAGGCTTGATGC 59.799 52.381 0.00 0.00 41.94 3.91
121 122 0.401356 TGAACCAGAGGCTTGATGCA 59.599 50.000 0.00 0.00 45.15 3.96
150 151 1.860078 GTAGCGCTGCGTTCAACTT 59.140 52.632 22.90 3.70 0.00 2.66
151 152 0.179248 GTAGCGCTGCGTTCAACTTC 60.179 55.000 22.90 5.75 0.00 3.01
154 155 1.289109 GCGCTGCGTTCAACTTCCTA 61.289 55.000 24.04 0.00 0.00 2.94
155 156 1.144969 CGCTGCGTTCAACTTCCTAA 58.855 50.000 14.93 0.00 0.00 2.69
158 159 2.157863 GCTGCGTTCAACTTCCTAAGTC 59.842 50.000 0.00 0.00 41.91 3.01
159 160 2.400399 TGCGTTCAACTTCCTAAGTCG 58.600 47.619 0.00 0.00 41.91 4.18
160 161 2.223876 TGCGTTCAACTTCCTAAGTCGT 60.224 45.455 0.00 0.00 41.91 4.34
161 162 2.407696 GCGTTCAACTTCCTAAGTCGTC 59.592 50.000 0.00 0.00 41.91 4.20
162 163 2.655474 CGTTCAACTTCCTAAGTCGTCG 59.345 50.000 0.00 0.00 41.91 5.12
163 164 3.636381 GTTCAACTTCCTAAGTCGTCGT 58.364 45.455 0.00 0.00 41.91 4.34
164 165 3.278367 TCAACTTCCTAAGTCGTCGTG 57.722 47.619 0.00 0.00 41.91 4.35
165 166 2.880268 TCAACTTCCTAAGTCGTCGTGA 59.120 45.455 0.00 0.00 41.91 4.35
168 169 5.356190 TCAACTTCCTAAGTCGTCGTGATAT 59.644 40.000 0.00 0.00 41.91 1.63
174 175 1.758936 AGTCGTCGTGATATGGACCA 58.241 50.000 0.00 0.00 0.00 4.02
181 182 1.609061 CGTGATATGGACCATGGAGGC 60.609 57.143 21.47 7.12 43.14 4.70
182 183 0.686789 TGATATGGACCATGGAGGCG 59.313 55.000 21.47 0.00 43.14 5.52
183 184 0.976641 GATATGGACCATGGAGGCGA 59.023 55.000 21.47 4.94 43.14 5.54
185 186 1.121407 TATGGACCATGGAGGCGAGG 61.121 60.000 21.47 0.00 43.14 4.63
201 202 3.869623 AGGTGCACACATCTCATCC 57.130 52.632 20.43 0.00 28.02 3.51
202 203 0.986527 AGGTGCACACATCTCATCCA 59.013 50.000 20.43 0.00 28.02 3.41
203 204 1.562942 AGGTGCACACATCTCATCCAT 59.437 47.619 20.43 0.00 28.02 3.41
206 207 3.534554 GTGCACACATCTCATCCATACA 58.465 45.455 13.17 0.00 0.00 2.29
207 208 3.940852 GTGCACACATCTCATCCATACAA 59.059 43.478 13.17 0.00 0.00 2.41
208 209 3.940852 TGCACACATCTCATCCATACAAC 59.059 43.478 0.00 0.00 0.00 3.32
209 210 4.194640 GCACACATCTCATCCATACAACT 58.805 43.478 0.00 0.00 0.00 3.16
210 211 4.637534 GCACACATCTCATCCATACAACTT 59.362 41.667 0.00 0.00 0.00 2.66
212 213 5.876460 CACACATCTCATCCATACAACTTCA 59.124 40.000 0.00 0.00 0.00 3.02
217 218 6.611613 TCTCATCCATACAACTTCAAGACT 57.388 37.500 0.00 0.00 0.00 3.24
219 220 7.099764 TCTCATCCATACAACTTCAAGACTTC 58.900 38.462 0.00 0.00 0.00 3.01
220 221 6.768483 TCATCCATACAACTTCAAGACTTCA 58.232 36.000 0.00 0.00 0.00 3.02
223 224 5.306937 TCCATACAACTTCAAGACTTCAGGA 59.693 40.000 0.00 0.00 0.00 3.86
224 225 5.641209 CCATACAACTTCAAGACTTCAGGAG 59.359 44.000 0.00 0.00 0.00 3.69
225 226 6.459066 CATACAACTTCAAGACTTCAGGAGA 58.541 40.000 0.00 0.00 0.00 3.71
239 240 2.182030 GAGAGCTTGACCGGTCGG 59.818 66.667 28.70 23.39 42.03 4.79
244 245 2.100631 GCTTGACCGGTCGGATGTG 61.101 63.158 28.70 15.18 38.96 3.21
267 268 1.482593 TGGGGAGAAGATCGAAGAAGC 59.517 52.381 0.00 0.00 43.58 3.86
272 273 3.186119 GAGAAGATCGAAGAAGCCACAG 58.814 50.000 0.00 0.00 43.58 3.66
274 275 2.957491 AGATCGAAGAAGCCACAGAG 57.043 50.000 0.00 0.00 43.58 3.35
296 297 3.568007 GGCATTAGTGGCCGAAATCATAA 59.432 43.478 0.00 0.00 44.61 1.90
320 321 2.350498 ACAAGAAACGAGGTCAACAACG 59.650 45.455 0.00 0.00 0.00 4.10
322 323 2.199236 AGAAACGAGGTCAACAACGAC 58.801 47.619 0.00 0.00 35.03 4.34
346 347 2.420568 GGTGGTCGCCATCGTAGGA 61.421 63.158 1.90 0.00 35.28 2.94
356 357 1.685180 CCATCGTAGGAGTCTGTGGGA 60.685 57.143 0.00 0.00 0.00 4.37
381 382 0.550914 AAGACCACCCTTGCACAGAA 59.449 50.000 0.00 0.00 0.00 3.02
388 389 1.202818 ACCCTTGCACAGAAGGTCTTC 60.203 52.381 1.58 2.69 41.02 2.87
389 390 1.202806 CCCTTGCACAGAAGGTCTTCA 60.203 52.381 12.54 0.00 41.02 3.02
415 416 3.502572 GCCATCCAAGGCGAGTTC 58.497 61.111 0.00 0.00 46.12 3.01
437 438 3.739209 CGACAAGAAGATATGGCTGAGCA 60.739 47.826 6.82 0.00 0.00 4.26
455 456 4.761227 TGAGCATCAACAAGCACTTCAATA 59.239 37.500 0.00 0.00 45.97 1.90
456 457 5.241285 TGAGCATCAACAAGCACTTCAATAA 59.759 36.000 0.00 0.00 45.97 1.40
459 460 4.503741 TCAACAAGCACTTCAATAAGGC 57.496 40.909 0.00 0.00 37.01 4.35
463 464 3.503748 ACAAGCACTTCAATAAGGCTGAC 59.496 43.478 0.00 0.00 38.47 3.51
475 476 2.366469 GGCTGACCTTCTGAGGACA 58.634 57.895 0.00 0.00 46.74 4.02
483 484 2.289945 ACCTTCTGAGGACAGCAATCAC 60.290 50.000 0.00 0.00 46.74 3.06
486 487 2.250924 TCTGAGGACAGCAATCACTCA 58.749 47.619 0.00 0.00 43.17 3.41
487 488 2.634453 TCTGAGGACAGCAATCACTCAA 59.366 45.455 0.00 0.00 43.17 3.02
493 494 0.674581 CAGCAATCACTCAAGCCGGA 60.675 55.000 5.05 0.00 0.00 5.14
511 512 3.164024 AGGTGACTCATGTCCCACA 57.836 52.632 13.11 0.00 42.28 4.17
512 513 1.434188 AGGTGACTCATGTCCCACAA 58.566 50.000 13.11 0.00 42.28 3.33
513 514 1.774254 AGGTGACTCATGTCCCACAAA 59.226 47.619 13.11 0.00 42.28 2.83
514 515 2.376518 AGGTGACTCATGTCCCACAAAT 59.623 45.455 13.11 0.96 42.28 2.32
515 516 2.489329 GGTGACTCATGTCCCACAAATG 59.511 50.000 13.11 0.00 42.28 2.32
516 517 3.411446 GTGACTCATGTCCCACAAATGA 58.589 45.455 0.00 0.00 42.28 2.57
517 518 4.012374 GTGACTCATGTCCCACAAATGAT 58.988 43.478 0.00 0.00 42.28 2.45
520 521 4.665451 ACTCATGTCCCACAAATGATGAA 58.335 39.130 0.00 0.00 30.31 2.57
524 525 4.804868 TGTCCCACAAATGATGAAATGG 57.195 40.909 0.00 0.00 0.00 3.16
525 526 4.414677 TGTCCCACAAATGATGAAATGGA 58.585 39.130 0.00 0.00 0.00 3.41
526 527 4.220382 TGTCCCACAAATGATGAAATGGAC 59.780 41.667 0.00 0.00 36.84 4.02
527 528 4.220382 GTCCCACAAATGATGAAATGGACA 59.780 41.667 0.00 0.00 36.58 4.02
533 534 4.563337 AATGATGAAATGGACATGCTCG 57.437 40.909 0.00 0.00 0.00 5.03
534 535 2.989909 TGATGAAATGGACATGCTCGT 58.010 42.857 0.00 0.00 0.00 4.18
535 536 3.346315 TGATGAAATGGACATGCTCGTT 58.654 40.909 0.00 0.00 0.00 3.85
536 537 3.127376 TGATGAAATGGACATGCTCGTTG 59.873 43.478 0.00 0.00 0.00 4.10
537 538 2.777094 TGAAATGGACATGCTCGTTGA 58.223 42.857 0.00 0.00 0.00 3.18
538 539 3.346315 TGAAATGGACATGCTCGTTGAT 58.654 40.909 0.00 0.00 0.00 2.57
545 546 3.496130 GGACATGCTCGTTGATATCCTTG 59.504 47.826 0.00 0.00 0.00 3.61
547 548 2.689553 TGCTCGTTGATATCCTTGCA 57.310 45.000 0.00 1.53 0.00 4.08
549 550 2.168313 TGCTCGTTGATATCCTTGCAGA 59.832 45.455 0.00 0.00 0.00 4.26
557 558 2.353357 TATCCTTGCAGATGCCTTGG 57.647 50.000 1.72 2.27 41.18 3.61
596 597 3.359033 CTGGTGATGGATGATGTTTGGT 58.641 45.455 0.00 0.00 0.00 3.67
600 601 3.632145 GTGATGGATGATGTTTGGTACCC 59.368 47.826 10.07 0.00 0.00 3.69
601 602 2.818751 TGGATGATGTTTGGTACCCC 57.181 50.000 10.07 0.00 0.00 4.95
602 603 1.996291 TGGATGATGTTTGGTACCCCA 59.004 47.619 10.07 2.84 39.65 4.96
623 624 1.302752 GCATGGGAGTGTGTGCTCA 60.303 57.895 0.00 0.00 37.24 4.26
627 628 2.136298 TGGGAGTGTGTGCTCAAAAA 57.864 45.000 0.00 0.00 37.24 1.94
646 647 4.834357 AAAACCATTTTTCAATGCTGCC 57.166 36.364 0.00 0.00 38.88 4.85
649 650 0.367548 CATTTTTCAATGCTGCCGCG 59.632 50.000 0.00 0.00 39.65 6.46
651 652 4.757354 TTTCAATGCTGCCGCGCG 62.757 61.111 25.67 25.67 39.65 6.86
670 671 2.766970 GAGGTAGTCGAGTGCTCATC 57.233 55.000 8.30 1.43 0.00 2.92
676 677 0.244994 GTCGAGTGCTCATCACCACT 59.755 55.000 0.00 0.00 46.81 4.00
681 682 3.733380 CGAGTGCTCATCACCACTAGAAG 60.733 52.174 0.00 0.00 46.81 2.85
682 683 2.499289 AGTGCTCATCACCACTAGAAGG 59.501 50.000 0.00 0.00 46.81 3.46
686 687 3.431486 GCTCATCACCACTAGAAGGGAAG 60.431 52.174 0.00 0.00 0.00 3.46
687 688 4.026744 CTCATCACCACTAGAAGGGAAGA 58.973 47.826 0.00 0.00 0.00 2.87
688 689 4.624913 TCATCACCACTAGAAGGGAAGAT 58.375 43.478 0.00 1.55 0.00 2.40
696 697 0.035056 AGAAGGGAAGATGTTGCCCG 60.035 55.000 9.68 0.00 45.31 6.13
697 698 0.322546 GAAGGGAAGATGTTGCCCGT 60.323 55.000 9.68 4.14 45.31 5.28
698 699 0.322546 AAGGGAAGATGTTGCCCGTC 60.323 55.000 9.68 0.00 45.31 4.79
699 700 2.106683 GGGAAGATGTTGCCCGTCG 61.107 63.158 1.11 0.00 38.23 5.12
700 701 1.375523 GGAAGATGTTGCCCGTCGT 60.376 57.895 0.00 0.00 34.06 4.34
704 705 0.810031 AGATGTTGCCCGTCGTATGC 60.810 55.000 0.00 0.00 34.06 3.14
731 732 4.735132 ATCCGTGCCACCGTGTCG 62.735 66.667 0.00 0.04 0.00 4.35
745 746 3.047796 CCGTGTCGATAAATTAGGTCCG 58.952 50.000 0.00 0.00 0.00 4.79
754 755 2.240493 AATTAGGTCCGGAAGATGCG 57.760 50.000 5.23 0.00 0.00 4.73
761 762 2.100631 CCGGAAGATGCGTGGTCAC 61.101 63.158 0.00 0.00 0.00 3.67
763 764 1.354337 CGGAAGATGCGTGGTCACTG 61.354 60.000 0.00 0.00 0.00 3.66
764 765 0.037326 GGAAGATGCGTGGTCACTGA 60.037 55.000 0.00 0.00 0.00 3.41
766 767 1.662629 GAAGATGCGTGGTCACTGATG 59.337 52.381 0.00 0.00 0.00 3.07
779 780 4.503991 GGTCACTGATGAAGAAACAGGTCT 60.504 45.833 0.00 0.00 36.31 3.85
785 786 4.988540 TGATGAAGAAACAGGTCTGTAACG 59.011 41.667 3.87 0.00 44.13 3.18
786 787 3.724374 TGAAGAAACAGGTCTGTAACGG 58.276 45.455 3.87 0.00 44.13 4.44
796 797 4.094887 CAGGTCTGTAACGGATCCAAATTG 59.905 45.833 13.41 0.00 0.00 2.32
804 805 6.865726 TGTAACGGATCCAAATTGTCATTTTG 59.134 34.615 13.41 11.58 34.55 2.44
833 834 8.571336 GTTAGCCAATTCATACATCTTGCTTAT 58.429 33.333 0.00 0.00 0.00 1.73
835 836 8.696043 AGCCAATTCATACATCTTGCTTATAA 57.304 30.769 0.00 0.00 0.00 0.98
836 837 9.305555 AGCCAATTCATACATCTTGCTTATAAT 57.694 29.630 0.00 0.00 0.00 1.28
837 838 9.918630 GCCAATTCATACATCTTGCTTATAATT 57.081 29.630 0.00 0.00 0.00 1.40
857 858 5.818136 ATTCATGGTTTAACTCATCACCG 57.182 39.130 0.00 0.00 31.24 4.94
862 863 3.000727 GGTTTAACTCATCACCGGTGAG 58.999 50.000 37.98 28.75 46.60 3.51
868 869 2.196749 CTCATCACCGGTGAGAAATCG 58.803 52.381 37.98 22.33 44.57 3.34
871 872 1.375396 CACCGGTGAGAAATCGGCA 60.375 57.895 31.31 0.00 46.87 5.69
873 874 0.462047 ACCGGTGAGAAATCGGCATC 60.462 55.000 6.12 0.00 46.87 3.91
874 875 0.461870 CCGGTGAGAAATCGGCATCA 60.462 55.000 0.00 0.00 37.25 3.07
911 912 5.470047 ACTTAGTCAACCAGTAACTCCTG 57.530 43.478 0.00 0.00 0.00 3.86
914 915 2.300437 AGTCAACCAGTAACTCCTGAGC 59.700 50.000 0.00 0.00 34.23 4.26
918 919 3.857157 ACCAGTAACTCCTGAGCAAAA 57.143 42.857 0.00 0.00 34.23 2.44
920 921 4.137543 ACCAGTAACTCCTGAGCAAAAAG 58.862 43.478 0.00 0.00 34.23 2.27
929 930 7.388460 ACTCCTGAGCAAAAAGAATCTAATG 57.612 36.000 0.00 0.00 0.00 1.90
930 931 7.170965 ACTCCTGAGCAAAAAGAATCTAATGA 58.829 34.615 0.00 0.00 0.00 2.57
951 952 1.673168 AAATGGCACTAGCTAGCAGC 58.327 50.000 23.56 23.56 42.84 5.25
971 972 5.168569 CAGCTCGTGAGTGTTCCTTATTAA 58.831 41.667 0.00 0.00 0.00 1.40
981 982 7.769044 TGAGTGTTCCTTATTAACTCTATTGGC 59.231 37.037 0.00 0.00 38.44 4.52
997 998 6.179756 TCTATTGGCTTAAACTGATTGCAGA 58.820 36.000 0.00 0.00 45.17 4.26
1000 1001 6.832520 TTGGCTTAAACTGATTGCAGATAA 57.167 33.333 0.00 0.00 45.17 1.75
1001 1002 7.408756 TTGGCTTAAACTGATTGCAGATAAT 57.591 32.000 0.00 0.00 45.17 1.28
1003 1004 6.183360 TGGCTTAAACTGATTGCAGATAATGG 60.183 38.462 0.00 0.00 45.17 3.16
1004 1005 6.211515 GCTTAAACTGATTGCAGATAATGGG 58.788 40.000 0.00 0.00 45.17 4.00
1013 1014 4.916983 TGCAGATAATGGGCAATAACAC 57.083 40.909 0.00 0.00 34.05 3.32
1014 1015 4.276642 TGCAGATAATGGGCAATAACACA 58.723 39.130 0.00 0.00 34.05 3.72
1015 1016 4.097741 TGCAGATAATGGGCAATAACACAC 59.902 41.667 0.00 0.00 34.05 3.82
1016 1017 4.097741 GCAGATAATGGGCAATAACACACA 59.902 41.667 0.00 0.00 0.00 3.72
1026 1027 4.093998 GGCAATAACACACATGAGACAGAG 59.906 45.833 0.00 0.00 0.00 3.35
1027 1028 4.436584 GCAATAACACACATGAGACAGAGC 60.437 45.833 0.00 0.00 0.00 4.09
1033 1043 3.371285 CACACATGAGACAGAGCTTGATG 59.629 47.826 0.00 0.00 0.00 3.07
1061 1071 8.964772 GCTAAAGGATATTGGATTGCAGATTAT 58.035 33.333 0.00 0.00 0.00 1.28
1108 1118 5.296151 TGCTATTAAAGTGATGGGAGGAG 57.704 43.478 0.00 0.00 0.00 3.69
1114 1124 2.030027 AGTGATGGGAGGAGTGTTGA 57.970 50.000 0.00 0.00 0.00 3.18
1117 1127 1.625315 TGATGGGAGGAGTGTTGAGTG 59.375 52.381 0.00 0.00 0.00 3.51
1118 1128 1.625818 GATGGGAGGAGTGTTGAGTGT 59.374 52.381 0.00 0.00 0.00 3.55
1121 1131 1.001406 GGGAGGAGTGTTGAGTGTGAG 59.999 57.143 0.00 0.00 0.00 3.51
1122 1132 1.964223 GGAGGAGTGTTGAGTGTGAGA 59.036 52.381 0.00 0.00 0.00 3.27
1123 1133 2.288518 GGAGGAGTGTTGAGTGTGAGAC 60.289 54.545 0.00 0.00 0.00 3.36
1125 1135 2.968574 AGGAGTGTTGAGTGTGAGACAT 59.031 45.455 0.00 0.00 0.00 3.06
1126 1136 3.062763 GGAGTGTTGAGTGTGAGACATG 58.937 50.000 0.00 0.00 0.00 3.21
1127 1137 3.493350 GGAGTGTTGAGTGTGAGACATGT 60.493 47.826 0.00 0.00 0.00 3.21
1128 1138 3.461061 AGTGTTGAGTGTGAGACATGTG 58.539 45.455 1.15 0.00 0.00 3.21
1129 1139 2.032549 GTGTTGAGTGTGAGACATGTGC 60.033 50.000 1.15 0.00 0.00 4.57
1132 1142 2.212652 TGAGTGTGAGACATGTGCAAC 58.787 47.619 1.15 0.00 37.35 4.17
1136 1146 1.965930 TGAGACATGTGCAACGGCC 60.966 57.895 1.15 0.00 42.39 6.13
1140 1150 2.187599 GACATGTGCAACGGCCTGAC 62.188 60.000 1.15 0.00 42.39 3.51
1144 1154 3.555324 TGCAACGGCCTGACTGGA 61.555 61.111 0.00 0.00 40.13 3.86
1145 1155 2.045926 GCAACGGCCTGACTGGAT 60.046 61.111 0.00 0.00 38.35 3.41
1148 1158 0.742281 CAACGGCCTGACTGGATGAG 60.742 60.000 0.00 0.00 38.35 2.90
1156 1166 2.182827 CTGACTGGATGAGGGTTCTGA 58.817 52.381 0.00 0.00 0.00 3.27
1161 1171 3.784763 ACTGGATGAGGGTTCTGAATGAT 59.215 43.478 0.00 0.00 0.00 2.45
1163 1173 5.197224 TGGATGAGGGTTCTGAATGATTT 57.803 39.130 0.00 0.00 0.00 2.17
1166 1176 7.356680 TGGATGAGGGTTCTGAATGATTTTAT 58.643 34.615 0.00 0.00 0.00 1.40
1173 1183 7.675619 AGGGTTCTGAATGATTTTATTCCAAGT 59.324 33.333 0.00 0.00 36.46 3.16
1177 1187 9.695526 TTCTGAATGATTTTATTCCAAGTTGTG 57.304 29.630 1.45 0.00 36.46 3.33
1180 1190 9.474920 TGAATGATTTTATTCCAAGTTGTGAAC 57.525 29.630 1.45 0.00 36.46 3.18
1184 1194 4.846779 TTATTCCAAGTTGTGAACTGCC 57.153 40.909 1.45 0.00 41.91 4.85
1190 1200 1.227853 GTTGTGAACTGCCCGAGGT 60.228 57.895 0.00 0.00 0.00 3.85
1192 1202 1.691195 TTGTGAACTGCCCGAGGTGA 61.691 55.000 0.00 0.00 0.00 4.02
1224 1234 8.194104 CACTCAGTGTACTTAAGCTATGAAGAT 58.806 37.037 1.29 0.00 0.00 2.40
1227 1237 9.628500 TCAGTGTACTTAAGCTATGAAGATCTA 57.372 33.333 1.29 0.00 0.00 1.98
1228 1238 9.891828 CAGTGTACTTAAGCTATGAAGATCTAG 57.108 37.037 1.29 0.00 0.00 2.43
1237 1247 5.602145 AGCTATGAAGATCTAGCTCCTTGTT 59.398 40.000 11.25 0.00 45.82 2.83
1242 1252 6.169094 TGAAGATCTAGCTCCTTGTTTGAAG 58.831 40.000 0.00 0.00 0.00 3.02
1271 1281 1.205893 CCTGCACTACTCACTTCTCCC 59.794 57.143 0.00 0.00 0.00 4.30
1278 1288 5.471257 CACTACTCACTTCTCCCTACAAAC 58.529 45.833 0.00 0.00 0.00 2.93
1279 1289 3.662247 ACTCACTTCTCCCTACAAACG 57.338 47.619 0.00 0.00 0.00 3.60
1317 1327 2.492881 TGACATTGTTGGCATGTGGATC 59.507 45.455 0.00 0.00 35.35 3.36
1320 1330 0.889994 TTGTTGGCATGTGGATCAGC 59.110 50.000 0.00 0.00 0.00 4.26
1333 1343 4.394920 TGTGGATCAGCGAAGGTTTTATTC 59.605 41.667 0.00 0.00 33.74 1.75
1335 1345 5.066505 GTGGATCAGCGAAGGTTTTATTCAT 59.933 40.000 0.00 0.00 33.74 2.57
1345 1355 6.801862 CGAAGGTTTTATTCATGGAAACTCAC 59.198 38.462 0.00 0.00 34.55 3.51
1347 1357 7.781324 AGGTTTTATTCATGGAAACTCACAT 57.219 32.000 0.00 0.00 34.55 3.21
1356 1366 7.337480 TCATGGAAACTCACATGATTATTGG 57.663 36.000 0.00 0.00 46.05 3.16
1357 1367 7.118060 TCATGGAAACTCACATGATTATTGGA 58.882 34.615 0.00 0.00 46.05 3.53
1358 1368 7.283807 TCATGGAAACTCACATGATTATTGGAG 59.716 37.037 0.00 0.00 46.05 3.86
1359 1369 6.720309 TGGAAACTCACATGATTATTGGAGA 58.280 36.000 0.00 0.00 0.00 3.71
1360 1370 6.825213 TGGAAACTCACATGATTATTGGAGAG 59.175 38.462 0.00 0.00 0.00 3.20
1361 1371 7.050377 GGAAACTCACATGATTATTGGAGAGA 58.950 38.462 0.00 0.00 0.00 3.10
1362 1372 7.718753 GGAAACTCACATGATTATTGGAGAGAT 59.281 37.037 0.00 0.00 0.00 2.75
1363 1373 9.118300 GAAACTCACATGATTATTGGAGAGATT 57.882 33.333 0.00 0.00 0.00 2.40
1364 1374 8.674263 AACTCACATGATTATTGGAGAGATTC 57.326 34.615 0.00 0.00 0.00 2.52
1365 1375 7.799081 ACTCACATGATTATTGGAGAGATTCA 58.201 34.615 0.00 0.00 0.00 2.57
1381 1391 7.710475 GGAGAGATTCAGAAGATTTAGGAAGTG 59.290 40.741 0.00 0.00 0.00 3.16
1385 1395 9.261035 AGATTCAGAAGATTTAGGAAGTGAGTA 57.739 33.333 0.00 0.00 0.00 2.59
1389 1399 8.958506 TCAGAAGATTTAGGAAGTGAGTACTAC 58.041 37.037 0.00 0.00 35.69 2.73
1392 1402 7.648039 AGATTTAGGAAGTGAGTACTACAGG 57.352 40.000 0.00 0.00 35.69 4.00
1422 1432 2.959707 ACTGAGGAACCTTATAGAGCCG 59.040 50.000 0.00 0.00 0.00 5.52
1445 1455 4.322801 GGATGCAAGGTACACTAGTCAACT 60.323 45.833 0.00 0.00 0.00 3.16
1464 1474 3.981211 ACTGGTTTGCAACATGAATGAC 58.019 40.909 0.00 0.00 0.00 3.06
1485 1495 2.601979 CGTTGTTCGCTCATTTGCTCAA 60.602 45.455 0.00 0.00 0.00 3.02
1487 1497 3.476295 TGTTCGCTCATTTGCTCAATC 57.524 42.857 0.00 0.00 0.00 2.67
1489 1499 2.112380 TCGCTCATTTGCTCAATCCA 57.888 45.000 0.00 0.00 0.00 3.41
1497 1507 6.211587 TCATTTGCTCAATCCATTTGTAGG 57.788 37.500 0.00 0.00 36.65 3.18
1498 1508 5.127519 TCATTTGCTCAATCCATTTGTAGGG 59.872 40.000 0.00 0.00 36.65 3.53
1503 1513 4.518211 GCTCAATCCATTTGTAGGGATGAG 59.482 45.833 0.76 0.76 43.91 2.90
1512 1522 2.388735 TGTAGGGATGAGGCACTAGTG 58.611 52.381 18.93 18.93 41.55 2.74
1527 1537 3.110705 ACTAGTGGCTCACAATGGAGAT 58.889 45.455 0.00 0.00 37.05 2.75
1528 1538 4.100035 CACTAGTGGCTCACAATGGAGATA 59.900 45.833 15.49 0.00 37.05 1.98
1529 1539 4.904251 ACTAGTGGCTCACAATGGAGATAT 59.096 41.667 0.00 0.00 37.05 1.63
1530 1540 4.082665 AGTGGCTCACAATGGAGATATG 57.917 45.455 7.86 0.00 37.05 1.78
1535 1545 4.940046 GGCTCACAATGGAGATATGTATGG 59.060 45.833 3.47 0.00 37.05 2.74
1536 1546 5.513788 GGCTCACAATGGAGATATGTATGGT 60.514 44.000 3.47 0.00 37.05 3.55
1537 1547 6.000219 GCTCACAATGGAGATATGTATGGTT 59.000 40.000 3.47 0.00 37.05 3.67
1538 1548 7.161404 GCTCACAATGGAGATATGTATGGTTA 58.839 38.462 3.47 0.00 37.05 2.85
1540 1550 9.376075 CTCACAATGGAGATATGTATGGTTATC 57.624 37.037 0.00 0.00 37.05 1.75
1541 1551 9.104713 TCACAATGGAGATATGTATGGTTATCT 57.895 33.333 0.00 0.00 37.77 1.98
1542 1552 9.730705 CACAATGGAGATATGTATGGTTATCTT 57.269 33.333 0.00 0.00 35.75 2.40
1572 1588 9.078990 TCAAGAAAGTTCTATCAGTTGTCTCTA 57.921 33.333 0.00 0.00 36.28 2.43
1573 1589 9.352784 CAAGAAAGTTCTATCAGTTGTCTCTAG 57.647 37.037 0.00 0.00 36.28 2.43
1579 1595 7.177568 AGTTCTATCAGTTGTCTCTAGAAAGCA 59.822 37.037 0.00 0.00 32.05 3.91
1581 1597 7.896811 TCTATCAGTTGTCTCTAGAAAGCAAA 58.103 34.615 0.00 0.00 0.00 3.68
1583 1599 6.161855 TCAGTTGTCTCTAGAAAGCAAAGA 57.838 37.500 0.00 0.00 0.00 2.52
1586 1602 7.716998 TCAGTTGTCTCTAGAAAGCAAAGAATT 59.283 33.333 0.00 0.00 0.00 2.17
1587 1603 7.802251 CAGTTGTCTCTAGAAAGCAAAGAATTG 59.198 37.037 0.00 0.00 39.65 2.32
1590 1606 6.652481 TGTCTCTAGAAAGCAAAGAATTGGAG 59.348 38.462 0.00 0.00 37.02 3.86
1602 1618 8.049117 AGCAAAGAATTGGAGTCAGATATGTTA 58.951 33.333 0.00 0.00 37.02 2.41
1605 1621 9.606631 AAAGAATTGGAGTCAGATATGTTAGTC 57.393 33.333 0.00 0.00 0.00 2.59
1615 1631 7.068103 AGTCAGATATGTTAGTCTGGAGTCTTG 59.932 40.741 2.90 0.00 41.64 3.02
1622 1638 5.831525 TGTTAGTCTGGAGTCTTGTACAAGA 59.168 40.000 30.07 30.07 44.47 3.02
1636 1652 5.611796 TGTACAAGAACAGACATCATTGC 57.388 39.130 0.00 0.00 0.00 3.56
1641 1657 2.413112 AGAACAGACATCATTGCGAACG 59.587 45.455 0.00 0.00 0.00 3.95
1645 1661 2.034254 CAGACATCATTGCGAACGCTAG 60.034 50.000 19.32 9.61 42.51 3.42
1667 1683 5.699143 AGTATCAATTGGCCAGATAAAGCT 58.301 37.500 13.26 5.78 0.00 3.74
1669 1685 7.290061 AGTATCAATTGGCCAGATAAAGCTTA 58.710 34.615 13.26 0.00 0.00 3.09
1673 1689 5.598416 ATTGGCCAGATAAAGCTTAAACC 57.402 39.130 5.11 0.00 0.00 3.27
1683 1699 7.337942 CAGATAAAGCTTAAACCTGGTGATTCT 59.662 37.037 0.00 0.00 0.00 2.40
1689 1705 6.071728 AGCTTAAACCTGGTGATTCTTTGATG 60.072 38.462 0.00 0.00 0.00 3.07
1690 1706 6.588719 TTAAACCTGGTGATTCTTTGATGG 57.411 37.500 0.00 0.00 0.00 3.51
1691 1707 2.450476 ACCTGGTGATTCTTTGATGGC 58.550 47.619 0.00 0.00 0.00 4.40
1708 1724 1.072505 GCCTTTCCAAGTCCACGGA 59.927 57.895 0.00 0.00 0.00 4.69
1716 1732 0.037605 CAAGTCCACGGACCCTACAC 60.038 60.000 12.66 0.00 45.59 2.90
1726 1742 2.963101 CGGACCCTACACATAGAATCCA 59.037 50.000 0.00 0.00 34.30 3.41
1739 1755 2.522185 AGAATCCACAAATGCTGCTGT 58.478 42.857 0.00 0.00 0.00 4.40
1741 1757 4.275810 AGAATCCACAAATGCTGCTGTAT 58.724 39.130 0.00 0.00 0.00 2.29
1760 1776 6.514870 GCTGTATTGGTTGAATCTTTGTGTCA 60.515 38.462 0.00 0.00 0.00 3.58
1966 1982 9.123902 GTATAAATGTTATACCTCGGGGTTTTT 57.876 33.333 15.04 6.37 44.73 1.94
1969 1985 5.495926 TGTTATACCTCGGGGTTTTTGTA 57.504 39.130 15.04 0.00 44.73 2.41
1970 1986 6.064735 TGTTATACCTCGGGGTTTTTGTAT 57.935 37.500 15.04 0.01 44.73 2.29
1976 1992 5.005740 ACCTCGGGGTTTTTGTATTCTAAC 58.994 41.667 0.00 0.00 44.73 2.34
2034 2050 2.350522 GATGGCAACTGGTGTAGTCTG 58.649 52.381 0.00 0.00 39.18 3.51
2044 2060 3.305720 TGGTGTAGTCTGGAAGAGTTGT 58.694 45.455 0.00 0.00 46.68 3.32
2057 2073 0.955919 GAGTTGTGGCCTCTTTCCCG 60.956 60.000 3.32 0.00 0.00 5.14
2063 2079 0.772384 TGGCCTCTTTCCCGGTTAAA 59.228 50.000 3.32 0.00 0.00 1.52
2072 2088 6.015772 CCTCTTTCCCGGTTAAAAGAAATTGA 60.016 38.462 18.78 7.46 40.09 2.57
2088 2104 6.524734 AGAAATTGAATTGAAGGGTTTGGAC 58.475 36.000 0.00 0.00 0.00 4.02
2101 2117 2.095059 GGTTTGGACAATGTAGCTGCTG 60.095 50.000 13.43 0.00 0.00 4.41
2102 2118 1.825090 TTGGACAATGTAGCTGCTGG 58.175 50.000 13.43 0.00 0.00 4.85
2103 2119 0.692476 TGGACAATGTAGCTGCTGGT 59.308 50.000 13.43 0.00 0.00 4.00
2112 2128 1.338020 GTAGCTGCTGGTTTGTTTGCT 59.662 47.619 13.43 0.00 0.00 3.91
2114 2130 0.102844 GCTGCTGGTTTGTTTGCTGA 59.897 50.000 0.00 0.00 0.00 4.26
2117 2133 2.861935 CTGCTGGTTTGTTTGCTGAAAG 59.138 45.455 0.00 0.00 0.00 2.62
2128 2144 3.359002 CTGAAAGCGCCAGCCTTT 58.641 55.556 2.29 0.00 46.67 3.11
2129 2145 2.555123 CTGAAAGCGCCAGCCTTTA 58.445 52.632 2.29 0.00 46.67 1.85
2131 2147 1.064654 CTGAAAGCGCCAGCCTTTATC 59.935 52.381 2.29 0.00 46.67 1.75
2138 2157 0.590195 GCCAGCCTTTATCAGATGCG 59.410 55.000 0.00 0.00 0.00 4.73
2144 2163 4.447054 CAGCCTTTATCAGATGCGTCTTAG 59.553 45.833 5.46 0.00 30.42 2.18
2161 2180 6.623331 GCGTCTTAGCTACTTGAAGTTAGAGT 60.623 42.308 1.97 0.00 0.00 3.24
2165 2184 4.815269 AGCTACTTGAAGTTAGAGTGCAG 58.185 43.478 1.97 0.00 0.00 4.41
2168 2187 3.134458 ACTTGAAGTTAGAGTGCAGCAC 58.866 45.455 18.55 18.55 34.10 4.40
2173 2192 1.274728 AGTTAGAGTGCAGCACCAGAG 59.725 52.381 22.41 0.00 34.49 3.35
2174 2193 1.001406 GTTAGAGTGCAGCACCAGAGT 59.999 52.381 22.41 2.48 34.49 3.24
2183 2202 3.072476 CACCAGAGTGGGAGGTGG 58.928 66.667 0.00 0.00 46.98 4.61
2186 2205 2.596851 CCAGAGTGGGAGGTGGTGG 61.597 68.421 0.00 0.00 32.67 4.61
2195 2214 0.702316 GGAGGTGGTGGGTTGGTTAT 59.298 55.000 0.00 0.00 0.00 1.89
2196 2215 1.917568 GGAGGTGGTGGGTTGGTTATA 59.082 52.381 0.00 0.00 0.00 0.98
2206 2225 5.280830 GGTGGGTTGGTTATAGAAGGAAGAA 60.281 44.000 0.00 0.00 0.00 2.52
2210 2229 6.473758 GGTTGGTTATAGAAGGAAGAAGTGT 58.526 40.000 0.00 0.00 0.00 3.55
2211 2230 7.310858 GGGTTGGTTATAGAAGGAAGAAGTGTA 60.311 40.741 0.00 0.00 0.00 2.90
2214 2233 9.886132 TTGGTTATAGAAGGAAGAAGTGTATTC 57.114 33.333 0.00 0.00 0.00 1.75
2227 2246 7.020827 AGAAGTGTATTCCAGGATGAAGAAA 57.979 36.000 0.00 0.00 39.69 2.52
2228 2247 7.461749 AGAAGTGTATTCCAGGATGAAGAAAA 58.538 34.615 0.00 0.00 39.69 2.29
2229 2248 7.391833 AGAAGTGTATTCCAGGATGAAGAAAAC 59.608 37.037 0.00 0.00 39.69 2.43
2234 2253 3.146066 TCCAGGATGAAGAAAACCAACG 58.854 45.455 0.00 0.00 39.69 4.10
2238 2257 5.393962 CAGGATGAAGAAAACCAACGAATC 58.606 41.667 0.00 0.00 39.69 2.52
2242 2261 3.496884 TGAAGAAAACCAACGAATCGAGG 59.503 43.478 10.55 13.27 0.00 4.63
2243 2262 1.804748 AGAAAACCAACGAATCGAGGC 59.195 47.619 10.55 0.00 0.00 4.70
2260 2279 1.648467 GGCGGTGTTTGATGAGCTCC 61.648 60.000 12.15 0.00 0.00 4.70
2270 2289 1.841302 GATGAGCTCCACCCACCACA 61.841 60.000 12.15 0.00 0.00 4.17
2272 2291 3.909086 GAGCTCCACCCACCACAGC 62.909 68.421 0.87 0.00 0.00 4.40
2282 2301 0.739813 CCACCACAGCGCCTAAGTAC 60.740 60.000 2.29 0.00 0.00 2.73
2288 2307 1.893801 ACAGCGCCTAAGTACTCTTGT 59.106 47.619 2.29 0.00 35.36 3.16
2320 2339 0.959372 CTTTGGTCTGCAGCTCCCAG 60.959 60.000 19.83 13.84 0.00 4.45
2347 2366 1.613925 TGAGAACAGAGGACCGTCTTG 59.386 52.381 0.00 0.00 0.00 3.02
2350 2369 1.614413 GAACAGAGGACCGTCTTGAGT 59.386 52.381 0.00 0.00 0.00 3.41
2351 2370 0.962489 ACAGAGGACCGTCTTGAGTG 59.038 55.000 0.00 0.00 0.00 3.51
2353 2372 0.540830 AGAGGACCGTCTTGAGTGCT 60.541 55.000 0.00 0.00 37.38 4.40
2427 2446 3.376546 GCTTGAGTCAGCTTCCCTATTTG 59.623 47.826 7.16 0.00 36.79 2.32
2428 2447 3.634397 TGAGTCAGCTTCCCTATTTGG 57.366 47.619 0.00 0.00 0.00 3.28
2443 2462 6.101296 TCCCTATTTGGAGGTCCTTAAGATTC 59.899 42.308 3.36 0.00 38.35 2.52
2484 2503 1.707989 TGTGTGGGGCCTGAATTCTTA 59.292 47.619 0.84 0.00 0.00 2.10
2490 2509 2.158740 GGGGCCTGAATTCTTAGGAGTC 60.159 54.545 14.51 4.55 36.11 3.36
2503 2522 4.339530 TCTTAGGAGTCTCCGAACATCATG 59.660 45.833 13.41 2.15 42.75 3.07
2513 2532 1.009829 GAACATCATGACCAGACGGC 58.990 55.000 0.00 0.00 34.57 5.68
2516 2535 0.249615 CATCATGACCAGACGGCGAT 60.250 55.000 16.62 0.00 34.57 4.58
2526 2545 2.550978 CAGACGGCGATTATGTTTCCT 58.449 47.619 16.62 0.00 0.00 3.36
2583 2602 1.846124 GGAGGAGTGGGTGTGGGAA 60.846 63.158 0.00 0.00 0.00 3.97
2584 2603 1.423794 GGAGGAGTGGGTGTGGGAAA 61.424 60.000 0.00 0.00 0.00 3.13
2630 2649 2.032620 GGAGGAGCTTCTGGTCGATAA 58.967 52.381 0.00 0.00 41.26 1.75
2684 2703 1.172180 TTCCGTGCAAGGGCTTTGAG 61.172 55.000 19.08 3.46 42.91 3.02
2694 2713 1.087501 GGGCTTTGAGACGATTGGTC 58.912 55.000 0.00 0.00 46.45 4.02
2708 2727 2.089887 TTGGTCGTTACTGCGGCTCA 62.090 55.000 0.00 0.00 36.62 4.26
2715 2734 1.069227 GTTACTGCGGCTCAAAACCTG 60.069 52.381 0.00 0.00 0.00 4.00
2752 2771 3.425577 TTGCTTCTGTTGTTGAGCTTG 57.574 42.857 0.00 0.00 0.00 4.01
2754 2773 2.355756 TGCTTCTGTTGTTGAGCTTGAC 59.644 45.455 0.00 0.00 0.00 3.18
2771 2790 4.610680 GCTTGACGTGTATTTCAGTCCAAC 60.611 45.833 0.00 0.00 33.04 3.77
2797 2816 6.811170 GCTGACAAGTATAGCTAATCTCCATC 59.189 42.308 0.00 0.00 34.70 3.51
2799 2818 8.250143 TGACAAGTATAGCTAATCTCCATCAA 57.750 34.615 0.00 0.00 0.00 2.57
2811 2830 3.225104 TCTCCATCAACTGCAAAAGCTT 58.775 40.909 0.00 0.00 0.00 3.74
2829 2848 3.129287 AGCTTACAATCATTTTCTGCCCG 59.871 43.478 0.00 0.00 0.00 6.13
2835 2854 1.453155 TCATTTTCTGCCCGAAGCTC 58.547 50.000 0.00 0.00 44.23 4.09
2840 2859 1.532604 TTCTGCCCGAAGCTCGAGAA 61.533 55.000 18.75 0.00 43.74 2.87
2871 2890 2.565391 TGTTCCTGCAATCCGAAGACTA 59.435 45.455 0.00 0.00 0.00 2.59
3108 3127 5.677319 AAGATCCCTACAAATTCGAGACA 57.323 39.130 0.00 0.00 0.00 3.41
3116 3135 6.072728 CCCTACAAATTCGAGACAAACATCAA 60.073 38.462 0.00 0.00 0.00 2.57
3137 3156 0.040067 CAACGCTCTTCCAAACTGGC 60.040 55.000 0.00 0.00 37.47 4.85
3181 3200 8.658609 CACCGATTGCTCATTTGATTTTATTTT 58.341 29.630 0.00 0.00 0.00 1.82
3204 3223 8.729805 TTTTTCTTTCCATGTTGCTTGTAATT 57.270 26.923 0.00 0.00 0.00 1.40
3205 3224 9.823647 TTTTTCTTTCCATGTTGCTTGTAATTA 57.176 25.926 0.00 0.00 0.00 1.40
3206 3225 9.823647 TTTTCTTTCCATGTTGCTTGTAATTAA 57.176 25.926 0.00 0.00 0.00 1.40
3207 3226 9.995003 TTTCTTTCCATGTTGCTTGTAATTAAT 57.005 25.926 0.00 0.00 0.00 1.40
3300 3319 3.255642 GGTGAAGACAAGCTTATTGGCAA 59.744 43.478 0.68 0.68 36.83 4.52
3339 3358 0.741326 GGCATAGACAGCTCGAGTGA 59.259 55.000 15.13 0.00 0.00 3.41
3362 3381 8.947115 GTGACTCAGCAGGTAGTTTATTAAATT 58.053 33.333 0.00 0.00 0.00 1.82
3384 3403 0.457166 CCATACGTTCTTGGCGTCGA 60.457 55.000 0.00 0.00 42.85 4.20
3415 3434 8.568794 CCATTTTCTCTATCTATCTACGTGTCA 58.431 37.037 0.00 0.00 0.00 3.58
3464 3483 2.748605 CCATAATCTCTCGGTGCTCAC 58.251 52.381 0.00 0.00 0.00 3.51
3467 3486 0.888619 AATCTCTCGGTGCTCACGAA 59.111 50.000 0.00 0.00 40.16 3.85
3560 3579 4.722361 TGGTACGCACACACTAATATGA 57.278 40.909 0.00 0.00 0.00 2.15
3648 3667 8.665643 TTCATCAATTCATTTGCTTGAAGTTT 57.334 26.923 0.00 0.00 38.90 2.66
3662 3681 7.254852 TGCTTGAAGTTTTCGTAAATTTCAGT 58.745 30.769 19.38 0.00 45.06 3.41
3711 3730 5.357742 TCTAACCATGCTCATAGCTTCAA 57.642 39.130 0.00 0.00 42.97 2.69
3752 3771 9.765795 ATATAGTCTGCATACTAAAACTGGAAC 57.234 33.333 15.08 0.00 35.65 3.62
3753 3772 4.929808 AGTCTGCATACTAAAACTGGAACG 59.070 41.667 2.37 0.00 0.00 3.95
3754 3773 4.927425 GTCTGCATACTAAAACTGGAACGA 59.073 41.667 0.00 0.00 0.00 3.85
3755 3774 5.407387 GTCTGCATACTAAAACTGGAACGAA 59.593 40.000 0.00 0.00 0.00 3.85
3756 3775 5.637810 TCTGCATACTAAAACTGGAACGAAG 59.362 40.000 0.00 0.00 0.00 3.79
3821 3840 7.493743 TCATTGTAAATGCTGTGCAATTTTT 57.506 28.000 0.00 0.00 43.62 1.94
3950 3969 9.853177 ACAAATATGGAAAGGAACTATTAGGAG 57.147 33.333 0.00 0.00 38.49 3.69
4135 4154 6.420306 TGCACTTTGTTTACATGCAACTTATG 59.580 34.615 7.06 0.00 43.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.247736 ACGAGTTGCTGATGGACCTC 59.752 55.000 0.00 0.00 0.00 3.85
1 2 0.036952 CACGAGTTGCTGATGGACCT 60.037 55.000 0.00 0.00 0.00 3.85
2 3 0.320771 ACACGAGTTGCTGATGGACC 60.321 55.000 0.00 0.00 0.00 4.46
3 4 1.071605 GACACGAGTTGCTGATGGAC 58.928 55.000 0.00 0.00 0.00 4.02
4 5 0.388520 CGACACGAGTTGCTGATGGA 60.389 55.000 0.00 0.00 0.00 3.41
5 6 0.667487 ACGACACGAGTTGCTGATGG 60.667 55.000 0.00 0.00 31.96 3.51
6 7 0.436150 CACGACACGAGTTGCTGATG 59.564 55.000 0.00 0.00 31.96 3.07
7 8 1.284982 GCACGACACGAGTTGCTGAT 61.285 55.000 0.00 0.00 31.96 2.90
8 9 1.949133 GCACGACACGAGTTGCTGA 60.949 57.895 0.00 0.00 31.96 4.26
9 10 2.546321 GCACGACACGAGTTGCTG 59.454 61.111 0.00 0.24 31.96 4.41
10 11 3.030308 CGCACGACACGAGTTGCT 61.030 61.111 7.82 0.00 31.96 3.91
11 12 4.059459 CCGCACGACACGAGTTGC 62.059 66.667 0.00 0.00 31.96 4.17
12 13 4.059459 GCCGCACGACACGAGTTG 62.059 66.667 0.00 0.00 35.14 3.16
22 23 1.562575 AAGGAGTAAAACGCCGCACG 61.563 55.000 0.00 0.00 43.27 5.34
23 24 0.589708 AAAGGAGTAAAACGCCGCAC 59.410 50.000 0.00 0.00 43.27 5.34
24 25 0.589223 CAAAGGAGTAAAACGCCGCA 59.411 50.000 0.00 0.00 43.27 5.69
25 26 0.728129 GCAAAGGAGTAAAACGCCGC 60.728 55.000 0.00 0.00 43.27 6.53
26 27 0.872388 AGCAAAGGAGTAAAACGCCG 59.128 50.000 0.00 0.00 43.27 6.46
27 28 2.152016 AGAGCAAAGGAGTAAAACGCC 58.848 47.619 0.00 0.00 38.44 5.68
28 29 3.498777 AGAAGAGCAAAGGAGTAAAACGC 59.501 43.478 0.00 0.00 0.00 4.84
29 30 4.611581 GCAGAAGAGCAAAGGAGTAAAACG 60.612 45.833 0.00 0.00 0.00 3.60
68 69 2.258286 GCCAATGTCGTGGGCAAC 59.742 61.111 5.49 0.00 46.92 4.17
91 92 1.466167 CTCTGGTTCAACGCCTTGATG 59.534 52.381 0.00 0.00 36.26 3.07
99 100 1.466167 CATCAAGCCTCTGGTTCAACG 59.534 52.381 0.00 0.00 0.00 4.10
100 101 1.200948 GCATCAAGCCTCTGGTTCAAC 59.799 52.381 0.00 0.00 37.23 3.18
101 102 1.202915 TGCATCAAGCCTCTGGTTCAA 60.203 47.619 0.00 0.00 44.83 2.69
107 108 2.034685 CCATGATTGCATCAAGCCTCTG 59.965 50.000 0.00 0.00 43.50 3.35
108 109 2.092049 TCCATGATTGCATCAAGCCTCT 60.092 45.455 0.00 0.00 43.50 3.69
111 112 1.269621 GCTCCATGATTGCATCAAGCC 60.270 52.381 0.00 0.00 43.50 4.35
134 135 2.607892 GGAAGTTGAACGCAGCGCT 61.608 57.895 16.61 2.64 0.00 5.92
136 137 1.126846 CTTAGGAAGTTGAACGCAGCG 59.873 52.381 14.82 14.82 0.00 5.18
140 141 2.401351 ACGACTTAGGAAGTTGAACGC 58.599 47.619 12.53 0.00 44.20 4.84
141 142 2.655474 CGACGACTTAGGAAGTTGAACG 59.345 50.000 12.53 12.45 44.20 3.95
142 143 3.424529 CACGACGACTTAGGAAGTTGAAC 59.575 47.826 12.53 6.20 44.20 3.18
143 144 3.316029 TCACGACGACTTAGGAAGTTGAA 59.684 43.478 12.53 0.00 44.20 2.69
144 145 2.880268 TCACGACGACTTAGGAAGTTGA 59.120 45.455 12.53 1.05 44.20 3.18
146 147 5.450137 CCATATCACGACGACTTAGGAAGTT 60.450 44.000 0.00 0.00 43.03 2.66
147 148 4.036498 CCATATCACGACGACTTAGGAAGT 59.964 45.833 0.00 0.00 46.38 3.01
150 151 3.562973 GTCCATATCACGACGACTTAGGA 59.437 47.826 0.00 0.00 0.00 2.94
151 152 3.304525 GGTCCATATCACGACGACTTAGG 60.305 52.174 0.00 0.00 0.00 2.69
154 155 2.097036 TGGTCCATATCACGACGACTT 58.903 47.619 0.00 0.00 0.00 3.01
155 156 1.758936 TGGTCCATATCACGACGACT 58.241 50.000 0.00 0.00 0.00 4.18
158 159 1.339929 TCCATGGTCCATATCACGACG 59.660 52.381 12.58 0.00 0.00 5.12
159 160 2.289072 CCTCCATGGTCCATATCACGAC 60.289 54.545 12.58 0.00 0.00 4.34
160 161 1.970640 CCTCCATGGTCCATATCACGA 59.029 52.381 12.58 0.00 0.00 4.35
161 162 1.609061 GCCTCCATGGTCCATATCACG 60.609 57.143 12.58 0.00 38.35 4.35
162 163 1.609061 CGCCTCCATGGTCCATATCAC 60.609 57.143 12.58 0.00 38.35 3.06
163 164 0.686789 CGCCTCCATGGTCCATATCA 59.313 55.000 12.58 0.00 38.35 2.15
164 165 0.976641 TCGCCTCCATGGTCCATATC 59.023 55.000 12.58 0.00 38.35 1.63
165 166 0.979665 CTCGCCTCCATGGTCCATAT 59.020 55.000 12.58 0.00 38.35 1.78
168 169 3.083349 CCTCGCCTCCATGGTCCA 61.083 66.667 12.58 0.00 38.35 4.02
174 175 3.321648 TGTGCACCTCGCCTCCAT 61.322 61.111 15.69 0.00 41.33 3.41
181 182 1.284657 GATGAGATGTGTGCACCTCG 58.715 55.000 15.69 0.00 32.31 4.63
182 183 1.065926 TGGATGAGATGTGTGCACCTC 60.066 52.381 15.69 13.71 0.00 3.85
183 184 0.986527 TGGATGAGATGTGTGCACCT 59.013 50.000 15.69 3.33 0.00 4.00
185 186 3.534554 TGTATGGATGAGATGTGTGCAC 58.465 45.455 10.75 10.75 0.00 4.57
191 192 6.820656 GTCTTGAAGTTGTATGGATGAGATGT 59.179 38.462 0.00 0.00 0.00 3.06
193 194 7.192852 AGTCTTGAAGTTGTATGGATGAGAT 57.807 36.000 0.00 0.00 0.00 2.75
195 196 6.875726 TGAAGTCTTGAAGTTGTATGGATGAG 59.124 38.462 0.00 0.00 0.00 2.90
200 201 5.551233 TCCTGAAGTCTTGAAGTTGTATGG 58.449 41.667 0.00 0.00 0.00 2.74
201 202 6.459066 TCTCCTGAAGTCTTGAAGTTGTATG 58.541 40.000 0.00 0.00 0.00 2.39
202 203 6.672266 TCTCCTGAAGTCTTGAAGTTGTAT 57.328 37.500 0.00 0.00 0.00 2.29
203 204 5.509840 GCTCTCCTGAAGTCTTGAAGTTGTA 60.510 44.000 0.00 0.00 0.00 2.41
206 207 3.645687 AGCTCTCCTGAAGTCTTGAAGTT 59.354 43.478 0.00 0.00 0.00 2.66
207 208 3.238597 AGCTCTCCTGAAGTCTTGAAGT 58.761 45.455 0.00 0.00 0.00 3.01
208 209 3.959535 AGCTCTCCTGAAGTCTTGAAG 57.040 47.619 0.00 0.00 0.00 3.02
209 210 3.643320 TCAAGCTCTCCTGAAGTCTTGAA 59.357 43.478 0.00 0.00 39.88 2.69
210 211 3.006323 GTCAAGCTCTCCTGAAGTCTTGA 59.994 47.826 0.00 0.00 40.19 3.02
212 213 2.301583 GGTCAAGCTCTCCTGAAGTCTT 59.698 50.000 0.00 0.00 0.00 3.01
217 218 0.832135 ACCGGTCAAGCTCTCCTGAA 60.832 55.000 0.00 0.00 0.00 3.02
219 220 1.216710 GACCGGTCAAGCTCTCCTG 59.783 63.158 29.75 0.00 0.00 3.86
220 221 2.344203 CGACCGGTCAAGCTCTCCT 61.344 63.158 32.80 0.00 0.00 3.69
223 224 1.682684 ATCCGACCGGTCAAGCTCT 60.683 57.895 32.80 9.12 36.47 4.09
224 225 1.519455 CATCCGACCGGTCAAGCTC 60.519 63.158 32.80 7.04 36.47 4.09
225 226 2.283529 ACATCCGACCGGTCAAGCT 61.284 57.895 32.80 13.39 36.47 3.74
239 240 2.743183 CGATCTTCTCCCCAACCACATC 60.743 54.545 0.00 0.00 0.00 3.06
244 245 1.831736 TCTTCGATCTTCTCCCCAACC 59.168 52.381 0.00 0.00 0.00 3.77
274 275 1.388547 TGATTTCGGCCACTAATGCC 58.611 50.000 2.24 0.00 45.70 4.40
287 288 8.797266 ACCTCGTTTCTTGTTTTTATGATTTC 57.203 30.769 0.00 0.00 0.00 2.17
289 290 7.936584 TGACCTCGTTTCTTGTTTTTATGATT 58.063 30.769 0.00 0.00 0.00 2.57
296 297 5.158494 GTTGTTGACCTCGTTTCTTGTTTT 58.842 37.500 0.00 0.00 0.00 2.43
332 333 0.029567 CAGACTCCTACGATGGCGAC 59.970 60.000 0.00 0.00 41.64 5.19
338 339 2.695666 CAATCCCACAGACTCCTACGAT 59.304 50.000 0.00 0.00 0.00 3.73
341 342 1.134371 GCCAATCCCACAGACTCCTAC 60.134 57.143 0.00 0.00 0.00 3.18
346 347 1.067295 TCTTGCCAATCCCACAGACT 58.933 50.000 0.00 0.00 0.00 3.24
373 374 1.138069 TCGTTGAAGACCTTCTGTGCA 59.862 47.619 10.67 0.00 40.14 4.57
376 377 1.679680 TCGTCGTTGAAGACCTTCTGT 59.320 47.619 10.67 0.00 40.14 3.41
381 382 1.289380 GCCTCGTCGTTGAAGACCT 59.711 57.895 0.00 0.00 37.85 3.85
388 389 1.361668 CTTGGATGGCCTCGTCGTTG 61.362 60.000 3.32 0.00 34.31 4.10
389 390 1.079127 CTTGGATGGCCTCGTCGTT 60.079 57.895 3.32 0.00 34.31 3.85
409 410 3.487574 GCCATATCTTCTTGTCGAACTCG 59.512 47.826 0.00 0.00 41.45 4.18
415 416 2.799412 GCTCAGCCATATCTTCTTGTCG 59.201 50.000 0.00 0.00 0.00 4.35
420 421 4.141551 TGTTGATGCTCAGCCATATCTTCT 60.142 41.667 0.00 0.00 0.00 2.85
423 424 3.851458 TGTTGATGCTCAGCCATATCT 57.149 42.857 0.00 0.00 0.00 1.98
437 438 4.768968 AGCCTTATTGAAGTGCTTGTTGAT 59.231 37.500 0.00 0.00 36.42 2.57
456 457 2.170767 CTGTCCTCAGAAGGTCAGCCT 61.171 57.143 5.92 0.00 46.89 4.58
463 464 2.027377 AGTGATTGCTGTCCTCAGAAGG 60.027 50.000 0.00 0.00 43.76 3.46
466 467 2.250924 TGAGTGATTGCTGTCCTCAGA 58.749 47.619 0.00 0.00 43.76 3.27
469 470 1.736681 GCTTGAGTGATTGCTGTCCTC 59.263 52.381 0.00 0.00 0.00 3.71
473 474 0.957395 CCGGCTTGAGTGATTGCTGT 60.957 55.000 0.00 0.00 0.00 4.40
475 476 0.392193 CTCCGGCTTGAGTGATTGCT 60.392 55.000 0.00 0.00 0.00 3.91
483 484 1.216710 GAGTCACCTCCGGCTTGAG 59.783 63.158 0.00 0.00 0.00 3.02
486 487 1.194781 ACATGAGTCACCTCCGGCTT 61.195 55.000 0.00 0.00 36.86 4.35
487 488 1.608717 GACATGAGTCACCTCCGGCT 61.609 60.000 0.00 0.00 44.34 5.52
496 497 3.786368 TCATTTGTGGGACATGAGTCA 57.214 42.857 0.00 0.00 46.80 3.41
498 499 4.305539 TCATCATTTGTGGGACATGAGT 57.694 40.909 0.00 0.00 44.52 3.41
499 500 5.648178 TTTCATCATTTGTGGGACATGAG 57.352 39.130 0.00 0.00 44.52 2.90
500 501 5.105269 CCATTTCATCATTTGTGGGACATGA 60.105 40.000 0.00 0.00 44.52 3.07
501 502 5.105269 TCCATTTCATCATTTGTGGGACATG 60.105 40.000 0.00 0.00 44.52 3.21
502 503 5.024785 TCCATTTCATCATTTGTGGGACAT 58.975 37.500 0.00 0.00 44.52 3.06
503 504 4.220382 GTCCATTTCATCATTTGTGGGACA 59.780 41.667 0.00 0.00 41.39 4.02
504 505 4.220382 TGTCCATTTCATCATTTGTGGGAC 59.780 41.667 0.00 0.00 41.94 4.46
505 506 4.414677 TGTCCATTTCATCATTTGTGGGA 58.585 39.130 0.00 0.00 0.00 4.37
506 507 4.804868 TGTCCATTTCATCATTTGTGGG 57.195 40.909 0.00 0.00 0.00 4.61
507 508 4.569162 GCATGTCCATTTCATCATTTGTGG 59.431 41.667 0.00 0.00 0.00 4.17
508 509 5.416083 AGCATGTCCATTTCATCATTTGTG 58.584 37.500 0.00 0.00 0.00 3.33
509 510 5.657474 GAGCATGTCCATTTCATCATTTGT 58.343 37.500 0.00 0.00 0.00 2.83
510 511 4.738252 CGAGCATGTCCATTTCATCATTTG 59.262 41.667 0.00 0.00 0.00 2.32
511 512 4.400251 ACGAGCATGTCCATTTCATCATTT 59.600 37.500 0.00 0.00 0.00 2.32
512 513 3.949754 ACGAGCATGTCCATTTCATCATT 59.050 39.130 0.00 0.00 0.00 2.57
513 514 3.548770 ACGAGCATGTCCATTTCATCAT 58.451 40.909 0.00 0.00 0.00 2.45
514 515 2.989909 ACGAGCATGTCCATTTCATCA 58.010 42.857 0.00 0.00 0.00 3.07
515 516 3.374988 TCAACGAGCATGTCCATTTCATC 59.625 43.478 0.00 0.00 0.00 2.92
516 517 3.346315 TCAACGAGCATGTCCATTTCAT 58.654 40.909 0.00 0.00 0.00 2.57
517 518 2.777094 TCAACGAGCATGTCCATTTCA 58.223 42.857 0.00 0.00 0.00 2.69
520 521 4.067896 GGATATCAACGAGCATGTCCATT 58.932 43.478 4.83 0.00 32.03 3.16
524 525 3.059325 GCAAGGATATCAACGAGCATGTC 60.059 47.826 4.83 0.00 0.00 3.06
525 526 2.874701 GCAAGGATATCAACGAGCATGT 59.125 45.455 4.83 0.00 0.00 3.21
526 527 2.874086 TGCAAGGATATCAACGAGCATG 59.126 45.455 4.83 0.00 0.00 4.06
527 528 3.136763 CTGCAAGGATATCAACGAGCAT 58.863 45.455 4.83 0.00 0.00 3.79
533 534 3.484407 AGGCATCTGCAAGGATATCAAC 58.516 45.455 4.83 0.00 44.36 3.18
534 535 3.870538 AGGCATCTGCAAGGATATCAA 57.129 42.857 4.83 0.00 44.36 2.57
535 536 3.483421 CAAGGCATCTGCAAGGATATCA 58.517 45.455 4.83 0.00 44.36 2.15
536 537 2.818432 CCAAGGCATCTGCAAGGATATC 59.182 50.000 4.33 0.00 44.36 1.63
537 538 2.872732 CCAAGGCATCTGCAAGGATAT 58.127 47.619 4.33 0.00 44.36 1.63
538 539 1.751733 GCCAAGGCATCTGCAAGGATA 60.752 52.381 6.14 0.00 44.36 2.59
601 602 1.859427 GCACACACTCCCATGCTGTG 61.859 60.000 8.67 8.67 40.98 3.66
602 603 1.601759 GCACACACTCCCATGCTGT 60.602 57.895 0.00 0.00 35.16 4.40
627 628 2.415776 CGGCAGCATTGAAAAATGGTT 58.584 42.857 0.00 0.00 38.68 3.67
646 647 3.862402 ACTCGACTACCTCGCGCG 61.862 66.667 26.76 26.76 42.62 6.86
649 650 1.062845 GAGCACTCGACTACCTCGC 59.937 63.158 0.00 0.00 42.62 5.03
651 652 2.017782 TGATGAGCACTCGACTACCTC 58.982 52.381 0.00 0.00 0.00 3.85
670 671 4.256920 CAACATCTTCCCTTCTAGTGGTG 58.743 47.826 0.00 0.00 0.00 4.17
676 677 1.209504 CGGGCAACATCTTCCCTTCTA 59.790 52.381 0.00 0.00 37.89 2.10
681 682 2.106683 CGACGGGCAACATCTTCCC 61.107 63.158 0.00 0.00 39.74 3.97
682 683 0.108520 TACGACGGGCAACATCTTCC 60.109 55.000 0.00 0.00 39.74 3.46
686 687 1.641677 GCATACGACGGGCAACATC 59.358 57.895 0.00 0.00 39.74 3.06
687 688 2.171079 CGCATACGACGGGCAACAT 61.171 57.895 0.00 0.00 43.93 2.71
688 689 2.811747 CGCATACGACGGGCAACA 60.812 61.111 0.00 0.00 43.93 3.33
696 697 2.962253 GCTGGGCTCGCATACGAC 60.962 66.667 0.00 0.00 45.12 4.34
697 698 2.796193 ATGCTGGGCTCGCATACGA 61.796 57.895 13.13 0.00 45.57 3.43
698 699 2.280389 ATGCTGGGCTCGCATACG 60.280 61.111 13.13 0.00 45.57 3.06
720 721 2.542595 CCTAATTTATCGACACGGTGGC 59.457 50.000 13.48 8.79 0.00 5.01
721 722 3.788937 ACCTAATTTATCGACACGGTGG 58.211 45.455 13.48 0.00 0.00 4.61
731 732 4.389077 CGCATCTTCCGGACCTAATTTATC 59.611 45.833 1.83 0.00 0.00 1.75
745 746 0.037326 TCAGTGACCACGCATCTTCC 60.037 55.000 0.00 0.00 36.20 3.46
754 755 3.499918 CCTGTTTCTTCATCAGTGACCAC 59.500 47.826 0.00 0.00 33.11 4.16
761 762 5.119279 CGTTACAGACCTGTTTCTTCATCAG 59.881 44.000 8.06 0.00 41.83 2.90
763 764 4.389077 CCGTTACAGACCTGTTTCTTCATC 59.611 45.833 8.06 0.00 41.83 2.92
764 765 4.039973 TCCGTTACAGACCTGTTTCTTCAT 59.960 41.667 8.06 0.00 41.83 2.57
766 767 3.986277 TCCGTTACAGACCTGTTTCTTC 58.014 45.455 8.06 0.00 41.83 2.87
779 780 6.582677 AAATGACAATTTGGATCCGTTACA 57.417 33.333 7.39 6.57 34.63 2.41
807 808 6.382869 AGCAAGATGTATGAATTGGCTAAC 57.617 37.500 0.00 0.00 0.00 2.34
833 834 6.317642 CCGGTGATGAGTTAAACCATGAATTA 59.682 38.462 0.00 0.00 32.69 1.40
835 836 4.640201 CCGGTGATGAGTTAAACCATGAAT 59.360 41.667 0.00 0.00 32.69 2.57
836 837 4.006989 CCGGTGATGAGTTAAACCATGAA 58.993 43.478 0.00 0.00 32.69 2.57
837 838 3.008594 ACCGGTGATGAGTTAAACCATGA 59.991 43.478 6.12 0.00 32.69 3.07
845 846 4.676986 CGATTTCTCACCGGTGATGAGTTA 60.677 45.833 36.21 21.44 43.47 2.24
848 849 2.196749 CGATTTCTCACCGGTGATGAG 58.803 52.381 36.21 24.75 44.22 2.90
853 854 0.744414 ATGCCGATTTCTCACCGGTG 60.744 55.000 29.26 29.26 44.63 4.94
856 857 0.933097 CTGATGCCGATTTCTCACCG 59.067 55.000 0.00 0.00 0.00 4.94
857 858 0.659957 GCTGATGCCGATTTCTCACC 59.340 55.000 0.00 0.00 0.00 4.02
874 875 9.392259 GGTTGACTAAGTAATAATTAAGTGGCT 57.608 33.333 0.00 0.00 0.00 4.75
886 887 7.453752 TCAGGAGTTACTGGTTGACTAAGTAAT 59.546 37.037 0.00 4.25 38.34 1.89
887 888 6.779049 TCAGGAGTTACTGGTTGACTAAGTAA 59.221 38.462 0.00 0.00 38.98 2.24
888 889 6.309357 TCAGGAGTTACTGGTTGACTAAGTA 58.691 40.000 0.00 0.00 38.98 2.24
889 890 5.145564 TCAGGAGTTACTGGTTGACTAAGT 58.854 41.667 0.00 0.00 38.98 2.24
894 895 2.037251 TGCTCAGGAGTTACTGGTTGAC 59.963 50.000 0.00 0.00 38.98 3.18
907 908 8.408043 TTTCATTAGATTCTTTTTGCTCAGGA 57.592 30.769 0.00 0.00 0.00 3.86
908 909 9.480053 TTTTTCATTAGATTCTTTTTGCTCAGG 57.520 29.630 0.00 0.00 0.00 3.86
914 915 9.815936 GTGCCATTTTTCATTAGATTCTTTTTG 57.184 29.630 0.00 0.00 0.00 2.44
918 919 8.193438 GCTAGTGCCATTTTTCATTAGATTCTT 58.807 33.333 0.00 0.00 0.00 2.52
920 921 7.710896 AGCTAGTGCCATTTTTCATTAGATTC 58.289 34.615 0.00 0.00 40.80 2.52
929 930 3.488216 GCTGCTAGCTAGTGCCATTTTTC 60.488 47.826 21.62 2.01 38.45 2.29
930 931 2.424956 GCTGCTAGCTAGTGCCATTTTT 59.575 45.455 21.62 0.00 38.45 1.94
951 952 6.622549 AGAGTTAATAAGGAACACTCACGAG 58.377 40.000 0.00 0.00 37.02 4.18
954 955 9.099454 CCAATAGAGTTAATAAGGAACACTCAC 57.901 37.037 0.00 0.00 37.02 3.51
955 956 7.769044 GCCAATAGAGTTAATAAGGAACACTCA 59.231 37.037 0.00 0.00 37.02 3.41
971 972 5.945784 TGCAATCAGTTTAAGCCAATAGAGT 59.054 36.000 0.00 0.00 0.00 3.24
981 982 6.183360 TGCCCATTATCTGCAATCAGTTTAAG 60.183 38.462 0.00 0.00 41.10 1.85
997 998 6.039717 GTCTCATGTGTGTTATTGCCCATTAT 59.960 38.462 0.00 0.00 0.00 1.28
1000 1001 3.696051 GTCTCATGTGTGTTATTGCCCAT 59.304 43.478 0.00 0.00 0.00 4.00
1001 1002 3.081061 GTCTCATGTGTGTTATTGCCCA 58.919 45.455 0.00 0.00 0.00 5.36
1003 1004 4.002982 TCTGTCTCATGTGTGTTATTGCC 58.997 43.478 0.00 0.00 0.00 4.52
1004 1005 4.436584 GCTCTGTCTCATGTGTGTTATTGC 60.437 45.833 0.00 0.00 0.00 3.56
1007 1008 4.815533 AGCTCTGTCTCATGTGTGTTAT 57.184 40.909 0.00 0.00 0.00 1.89
1008 1009 4.039124 TCAAGCTCTGTCTCATGTGTGTTA 59.961 41.667 0.00 0.00 0.00 2.41
1009 1010 3.136763 CAAGCTCTGTCTCATGTGTGTT 58.863 45.455 0.00 0.00 0.00 3.32
1010 1011 2.366590 TCAAGCTCTGTCTCATGTGTGT 59.633 45.455 0.00 0.00 0.00 3.72
1011 1012 3.036075 TCAAGCTCTGTCTCATGTGTG 57.964 47.619 0.00 0.00 0.00 3.82
1012 1013 3.260128 TCATCAAGCTCTGTCTCATGTGT 59.740 43.478 0.00 0.00 0.00 3.72
1013 1014 3.858247 TCATCAAGCTCTGTCTCATGTG 58.142 45.455 0.00 0.00 0.00 3.21
1014 1015 4.126208 CTCATCAAGCTCTGTCTCATGT 57.874 45.455 0.00 0.00 0.00 3.21
1027 1028 8.512956 CAATCCAATATCCTTTAGCTCATCAAG 58.487 37.037 0.00 0.00 0.00 3.02
1033 1043 6.000219 TCTGCAATCCAATATCCTTTAGCTC 59.000 40.000 0.00 0.00 0.00 4.09
1090 1100 5.014123 TCAACACTCCTCCCATCACTTTAAT 59.986 40.000 0.00 0.00 0.00 1.40
1108 1118 2.032549 GCACATGTCTCACACTCAACAC 60.033 50.000 0.00 0.00 0.00 3.32
1114 1124 1.220529 CGTTGCACATGTCTCACACT 58.779 50.000 0.00 0.00 0.00 3.55
1117 1127 1.207593 GCCGTTGCACATGTCTCAC 59.792 57.895 0.00 0.00 37.47 3.51
1118 1128 1.965930 GGCCGTTGCACATGTCTCA 60.966 57.895 0.00 0.00 40.13 3.27
1121 1131 1.965930 TCAGGCCGTTGCACATGTC 60.966 57.895 0.00 0.00 40.13 3.06
1122 1132 2.112928 TCAGGCCGTTGCACATGT 59.887 55.556 0.00 0.00 40.13 3.21
1123 1133 1.968017 AGTCAGGCCGTTGCACATG 60.968 57.895 0.00 0.00 40.13 3.21
1125 1135 2.591429 CAGTCAGGCCGTTGCACA 60.591 61.111 0.00 0.00 40.13 4.57
1126 1136 3.357079 CCAGTCAGGCCGTTGCAC 61.357 66.667 0.00 0.00 40.13 4.57
1127 1137 2.894257 ATCCAGTCAGGCCGTTGCA 61.894 57.895 0.00 0.00 40.13 4.08
1128 1138 2.045926 ATCCAGTCAGGCCGTTGC 60.046 61.111 0.00 0.00 37.29 4.17
1129 1139 0.742281 CTCATCCAGTCAGGCCGTTG 60.742 60.000 0.00 0.00 37.29 4.10
1132 1142 2.503061 CCTCATCCAGTCAGGCCG 59.497 66.667 0.00 0.00 37.29 6.13
1136 1146 2.182827 TCAGAACCCTCATCCAGTCAG 58.817 52.381 0.00 0.00 0.00 3.51
1140 1150 3.920231 TCATTCAGAACCCTCATCCAG 57.080 47.619 0.00 0.00 0.00 3.86
1144 1154 7.840716 TGGAATAAAATCATTCAGAACCCTCAT 59.159 33.333 0.00 0.00 36.77 2.90
1145 1155 7.181361 TGGAATAAAATCATTCAGAACCCTCA 58.819 34.615 0.00 0.00 36.77 3.86
1148 1158 7.840931 ACTTGGAATAAAATCATTCAGAACCC 58.159 34.615 0.00 0.00 36.77 4.11
1156 1166 9.480053 CAGTTCACAACTTGGAATAAAATCATT 57.520 29.630 0.00 0.00 40.46 2.57
1161 1171 5.452636 GGGCAGTTCACAACTTGGAATAAAA 60.453 40.000 0.00 0.00 40.46 1.52
1163 1173 3.572255 GGGCAGTTCACAACTTGGAATAA 59.428 43.478 0.00 0.00 40.46 1.40
1166 1176 1.398692 GGGCAGTTCACAACTTGGAA 58.601 50.000 0.00 0.00 40.46 3.53
1173 1183 1.227823 CACCTCGGGCAGTTCACAA 60.228 57.895 0.00 0.00 0.00 3.33
1177 1187 2.007608 GTTTATCACCTCGGGCAGTTC 58.992 52.381 0.00 0.00 0.00 3.01
1180 1190 3.080647 GGTTTATCACCTCGGGCAG 57.919 57.895 0.00 0.00 43.29 4.85
1190 1200 6.872020 GCTTAAGTACACTGAGTGGTTTATCA 59.128 38.462 17.92 0.00 37.94 2.15
1192 1202 7.005709 AGCTTAAGTACACTGAGTGGTTTAT 57.994 36.000 17.92 0.00 37.94 1.40
1224 1234 3.071602 ACTGCTTCAAACAAGGAGCTAGA 59.928 43.478 0.00 0.00 39.01 2.43
1227 1237 1.952296 CACTGCTTCAAACAAGGAGCT 59.048 47.619 3.05 0.00 39.01 4.09
1228 1238 1.601412 GCACTGCTTCAAACAAGGAGC 60.601 52.381 3.05 0.00 39.01 4.70
1251 1261 1.205893 GGGAGAAGTGAGTAGTGCAGG 59.794 57.143 0.00 0.00 0.00 4.85
1255 1265 5.471257 GTTTGTAGGGAGAAGTGAGTAGTG 58.529 45.833 0.00 0.00 0.00 2.74
1256 1266 4.217983 CGTTTGTAGGGAGAAGTGAGTAGT 59.782 45.833 0.00 0.00 0.00 2.73
1264 1274 2.069273 CACTGCGTTTGTAGGGAGAAG 58.931 52.381 0.00 0.00 32.11 2.85
1271 1281 5.161358 TCTCATAGAACACTGCGTTTGTAG 58.839 41.667 0.00 0.00 38.19 2.74
1278 1288 4.176271 TGTCATTCTCATAGAACACTGCG 58.824 43.478 0.00 0.00 37.00 5.18
1279 1289 6.093219 ACAATGTCATTCTCATAGAACACTGC 59.907 38.462 0.00 0.00 37.00 4.40
1317 1327 4.963276 TCCATGAATAAAACCTTCGCTG 57.037 40.909 0.00 0.00 0.00 5.18
1320 1330 6.801862 GTGAGTTTCCATGAATAAAACCTTCG 59.198 38.462 0.00 0.00 34.23 3.79
1333 1343 7.283807 TCTCCAATAATCATGTGAGTTTCCATG 59.716 37.037 0.00 0.00 39.82 3.66
1335 1345 6.720309 TCTCCAATAATCATGTGAGTTTCCA 58.280 36.000 0.00 0.00 0.00 3.53
1345 1355 9.727859 ATCTTCTGAATCTCTCCAATAATCATG 57.272 33.333 0.00 0.00 0.00 3.07
1352 1362 8.329346 TCCTAAATCTTCTGAATCTCTCCAAT 57.671 34.615 0.00 0.00 0.00 3.16
1353 1363 7.739995 TCCTAAATCTTCTGAATCTCTCCAA 57.260 36.000 0.00 0.00 0.00 3.53
1354 1364 7.401493 ACTTCCTAAATCTTCTGAATCTCTCCA 59.599 37.037 0.00 0.00 0.00 3.86
1355 1365 7.710475 CACTTCCTAAATCTTCTGAATCTCTCC 59.290 40.741 0.00 0.00 0.00 3.71
1356 1366 8.474025 TCACTTCCTAAATCTTCTGAATCTCTC 58.526 37.037 0.00 0.00 0.00 3.20
1357 1367 8.372877 TCACTTCCTAAATCTTCTGAATCTCT 57.627 34.615 0.00 0.00 0.00 3.10
1358 1368 8.257306 ACTCACTTCCTAAATCTTCTGAATCTC 58.743 37.037 0.00 0.00 0.00 2.75
1359 1369 8.144862 ACTCACTTCCTAAATCTTCTGAATCT 57.855 34.615 0.00 0.00 0.00 2.40
1360 1370 9.308318 GTACTCACTTCCTAAATCTTCTGAATC 57.692 37.037 0.00 0.00 0.00 2.52
1361 1371 9.041354 AGTACTCACTTCCTAAATCTTCTGAAT 57.959 33.333 0.00 0.00 0.00 2.57
1362 1372 8.423906 AGTACTCACTTCCTAAATCTTCTGAA 57.576 34.615 0.00 0.00 0.00 3.02
1363 1373 8.958506 GTAGTACTCACTTCCTAAATCTTCTGA 58.041 37.037 0.00 0.00 36.14 3.27
1364 1374 8.740906 TGTAGTACTCACTTCCTAAATCTTCTG 58.259 37.037 0.00 0.00 36.14 3.02
1365 1375 8.880991 TGTAGTACTCACTTCCTAAATCTTCT 57.119 34.615 0.00 0.00 36.14 2.85
1381 1391 6.297582 TCAGTATAAGCTCCCTGTAGTACTC 58.702 44.000 0.00 0.00 0.00 2.59
1385 1395 4.168283 TCCTCAGTATAAGCTCCCTGTAGT 59.832 45.833 0.00 0.00 0.00 2.73
1389 1399 3.070302 GGTTCCTCAGTATAAGCTCCCTG 59.930 52.174 0.00 0.00 0.00 4.45
1392 1402 6.673839 ATAAGGTTCCTCAGTATAAGCTCC 57.326 41.667 0.00 0.00 31.02 4.70
1422 1432 3.887621 TGACTAGTGTACCTTGCATCC 57.112 47.619 0.00 0.00 0.00 3.51
1464 1474 1.069973 TGAGCAAATGAGCGAACAACG 60.070 47.619 0.00 0.00 45.66 4.10
1485 1495 2.785269 TGCCTCATCCCTACAAATGGAT 59.215 45.455 0.00 0.00 42.12 3.41
1487 1497 2.092212 AGTGCCTCATCCCTACAAATGG 60.092 50.000 0.00 0.00 0.00 3.16
1489 1499 4.040755 ACTAGTGCCTCATCCCTACAAAT 58.959 43.478 0.00 0.00 0.00 2.32
1497 1507 0.105778 GAGCCACTAGTGCCTCATCC 59.894 60.000 24.96 2.07 35.38 3.51
1498 1508 0.826715 TGAGCCACTAGTGCCTCATC 59.173 55.000 27.81 15.33 39.72 2.92
1503 1513 1.089920 CATTGTGAGCCACTAGTGCC 58.910 55.000 17.86 6.54 35.11 5.01
1512 1522 4.940046 CCATACATATCTCCATTGTGAGCC 59.060 45.833 0.00 0.00 32.22 4.70
1541 1551 9.832445 ACAACTGATAGAACTTTCTTGAACTAA 57.168 29.630 0.00 0.00 38.70 2.24
1542 1552 9.477484 GACAACTGATAGAACTTTCTTGAACTA 57.523 33.333 0.00 0.00 38.70 2.24
1543 1553 8.207545 AGACAACTGATAGAACTTTCTTGAACT 58.792 33.333 0.00 0.00 38.70 3.01
1544 1554 8.371770 AGACAACTGATAGAACTTTCTTGAAC 57.628 34.615 0.00 0.00 38.70 3.18
1546 1556 7.957002 AGAGACAACTGATAGAACTTTCTTGA 58.043 34.615 0.00 0.00 38.70 3.02
1547 1557 9.352784 CTAGAGACAACTGATAGAACTTTCTTG 57.647 37.037 0.00 0.00 38.70 3.02
1548 1558 9.303116 TCTAGAGACAACTGATAGAACTTTCTT 57.697 33.333 0.00 0.00 38.70 2.52
1550 1560 9.915629 TTTCTAGAGACAACTGATAGAACTTTC 57.084 33.333 0.00 0.00 34.06 2.62
1551 1561 9.921637 CTTTCTAGAGACAACTGATAGAACTTT 57.078 33.333 0.00 0.00 34.06 2.66
1552 1562 8.032451 GCTTTCTAGAGACAACTGATAGAACTT 58.968 37.037 0.00 0.00 34.06 2.66
1553 1563 7.177568 TGCTTTCTAGAGACAACTGATAGAACT 59.822 37.037 0.00 0.00 34.06 3.01
1554 1564 7.316640 TGCTTTCTAGAGACAACTGATAGAAC 58.683 38.462 0.00 0.00 34.06 3.01
1555 1565 7.468141 TGCTTTCTAGAGACAACTGATAGAA 57.532 36.000 0.00 0.00 33.26 2.10
1556 1566 7.468141 TTGCTTTCTAGAGACAACTGATAGA 57.532 36.000 0.00 0.00 0.00 1.98
1557 1567 8.031864 TCTTTGCTTTCTAGAGACAACTGATAG 58.968 37.037 0.00 0.00 0.00 2.08
1558 1568 7.896811 TCTTTGCTTTCTAGAGACAACTGATA 58.103 34.615 0.00 0.00 0.00 2.15
1561 1571 6.851222 TTCTTTGCTTTCTAGAGACAACTG 57.149 37.500 0.00 0.00 0.00 3.16
1562 1572 7.040823 CCAATTCTTTGCTTTCTAGAGACAACT 60.041 37.037 0.00 0.00 0.00 3.16
1563 1573 7.041098 TCCAATTCTTTGCTTTCTAGAGACAAC 60.041 37.037 0.00 0.00 0.00 3.32
1564 1574 6.998074 TCCAATTCTTTGCTTTCTAGAGACAA 59.002 34.615 0.00 0.00 0.00 3.18
1572 1588 5.380043 TCTGACTCCAATTCTTTGCTTTCT 58.620 37.500 0.00 0.00 0.00 2.52
1573 1589 5.695851 TCTGACTCCAATTCTTTGCTTTC 57.304 39.130 0.00 0.00 0.00 2.62
1579 1595 9.606631 GACTAACATATCTGACTCCAATTCTTT 57.393 33.333 0.00 0.00 0.00 2.52
1581 1597 8.420222 CAGACTAACATATCTGACTCCAATTCT 58.580 37.037 0.00 0.00 44.32 2.40
1583 1599 7.345653 TCCAGACTAACATATCTGACTCCAATT 59.654 37.037 2.83 0.00 44.32 2.32
1586 1602 5.766590 TCCAGACTAACATATCTGACTCCA 58.233 41.667 2.83 0.00 44.32 3.86
1587 1603 5.830991 ACTCCAGACTAACATATCTGACTCC 59.169 44.000 2.83 0.00 44.32 3.85
1590 1606 6.952773 AGACTCCAGACTAACATATCTGAC 57.047 41.667 2.83 0.00 44.32 3.51
1602 1618 4.649674 TGTTCTTGTACAAGACTCCAGACT 59.350 41.667 32.81 0.00 46.13 3.24
1605 1621 4.985409 GTCTGTTCTTGTACAAGACTCCAG 59.015 45.833 32.81 31.56 46.13 3.86
1615 1631 4.388773 TCGCAATGATGTCTGTTCTTGTAC 59.611 41.667 0.00 0.00 0.00 2.90
1622 1638 1.135972 GCGTTCGCAATGATGTCTGTT 60.136 47.619 12.33 0.00 0.00 3.16
1628 1644 3.735746 TGATACTAGCGTTCGCAATGATG 59.264 43.478 18.95 5.12 0.00 3.07
1636 1652 2.221055 GGCCAATTGATACTAGCGTTCG 59.779 50.000 7.12 0.00 0.00 3.95
1641 1657 6.348868 GCTTTATCTGGCCAATTGATACTAGC 60.349 42.308 19.93 19.93 0.00 3.42
1645 1661 6.396829 AAGCTTTATCTGGCCAATTGATAC 57.603 37.500 7.01 0.00 0.00 2.24
1667 1683 5.047377 GCCATCAAAGAATCACCAGGTTTAA 60.047 40.000 0.00 0.00 0.00 1.52
1669 1685 3.259123 GCCATCAAAGAATCACCAGGTTT 59.741 43.478 0.00 0.00 0.00 3.27
1673 1689 2.731572 AGGCCATCAAAGAATCACCAG 58.268 47.619 5.01 0.00 0.00 4.00
1703 1719 3.243771 GGATTCTATGTGTAGGGTCCGTG 60.244 52.174 0.00 0.00 0.00 4.94
1708 1724 5.772393 TTTGTGGATTCTATGTGTAGGGT 57.228 39.130 0.00 0.00 0.00 4.34
1716 1732 4.097437 ACAGCAGCATTTGTGGATTCTATG 59.903 41.667 0.00 0.00 0.00 2.23
1726 1742 3.573538 TCAACCAATACAGCAGCATTTGT 59.426 39.130 0.00 0.00 0.00 2.83
1739 1755 7.581213 AGTTGACACAAAGATTCAACCAATA 57.419 32.000 9.49 0.00 46.88 1.90
1741 1757 5.913137 AGTTGACACAAAGATTCAACCAA 57.087 34.783 9.49 0.00 46.88 3.67
1760 1776 5.631119 ACAAATACCTCAGGTGCTTAAGTT 58.369 37.500 6.61 0.00 36.19 2.66
1986 2002 5.987019 AGGCTGGAAACCCATATAGTTTA 57.013 39.130 3.66 0.00 37.55 2.01
1990 2006 4.974645 TGTAGGCTGGAAACCCATATAG 57.025 45.455 0.00 0.00 32.36 1.31
2008 2024 1.354031 ACACCAGTTGCCATCCATGTA 59.646 47.619 0.00 0.00 0.00 2.29
2010 2026 2.019249 CTACACCAGTTGCCATCCATG 58.981 52.381 0.00 0.00 0.00 3.66
2020 2036 3.577919 ACTCTTCCAGACTACACCAGTT 58.422 45.455 0.00 0.00 37.72 3.16
2044 2060 0.772384 TTTAACCGGGAAAGAGGCCA 59.228 50.000 6.32 0.00 0.00 5.36
2057 2073 8.902540 ACCCTTCAATTCAATTTCTTTTAACC 57.097 30.769 0.00 0.00 0.00 2.85
2063 2079 6.992123 GTCCAAACCCTTCAATTCAATTTCTT 59.008 34.615 0.00 0.00 0.00 2.52
2072 2088 5.279456 GCTACATTGTCCAAACCCTTCAATT 60.279 40.000 0.00 0.00 0.00 2.32
2088 2104 3.648339 AACAAACCAGCAGCTACATTG 57.352 42.857 0.00 3.13 0.00 2.82
2101 2117 0.576798 GCGCTTTCAGCAAACAAACC 59.423 50.000 0.00 0.00 42.58 3.27
2102 2118 0.576798 GGCGCTTTCAGCAAACAAAC 59.423 50.000 7.64 0.00 42.58 2.93
2103 2119 0.174389 TGGCGCTTTCAGCAAACAAA 59.826 45.000 7.64 0.00 42.58 2.83
2112 2128 1.094785 GATAAAGGCTGGCGCTTTCA 58.905 50.000 7.64 0.00 33.97 2.69
2114 2130 1.098050 CTGATAAAGGCTGGCGCTTT 58.902 50.000 7.64 1.50 36.99 3.51
2117 2133 0.590195 CATCTGATAAAGGCTGGCGC 59.410 55.000 0.00 0.00 0.00 6.53
2118 2134 0.590195 GCATCTGATAAAGGCTGGCG 59.410 55.000 0.00 0.00 0.00 5.69
2124 2140 4.626042 AGCTAAGACGCATCTGATAAAGG 58.374 43.478 0.00 0.00 34.48 3.11
2128 2144 5.531287 TCAAGTAGCTAAGACGCATCTGATA 59.469 40.000 0.00 0.00 34.48 2.15
2129 2145 4.339530 TCAAGTAGCTAAGACGCATCTGAT 59.660 41.667 0.00 0.00 34.48 2.90
2131 2147 4.033990 TCAAGTAGCTAAGACGCATCTG 57.966 45.455 0.00 0.00 34.48 2.90
2138 2157 6.528774 GCACTCTAACTTCAAGTAGCTAAGAC 59.471 42.308 0.00 0.00 0.00 3.01
2144 2163 3.369451 GCTGCACTCTAACTTCAAGTAGC 59.631 47.826 0.00 0.00 0.00 3.58
2161 2180 2.848679 TCCCACTCTGGTGCTGCA 60.849 61.111 0.00 0.00 41.75 4.41
2165 2184 2.348998 CACCTCCCACTCTGGTGC 59.651 66.667 0.00 0.00 43.61 5.01
2168 2187 2.596851 CCACCACCTCCCACTCTGG 61.597 68.421 0.00 0.00 37.25 3.86
2173 2192 2.115266 CAACCCACCACCTCCCAC 59.885 66.667 0.00 0.00 0.00 4.61
2174 2193 3.182263 CCAACCCACCACCTCCCA 61.182 66.667 0.00 0.00 0.00 4.37
2183 2202 5.431179 TCTTCCTTCTATAACCAACCCAC 57.569 43.478 0.00 0.00 0.00 4.61
2186 2205 6.473758 ACACTTCTTCCTTCTATAACCAACC 58.526 40.000 0.00 0.00 0.00 3.77
2195 2214 6.261435 TCCTGGAATACACTTCTTCCTTCTA 58.739 40.000 0.00 0.00 41.29 2.10
2196 2215 5.094387 TCCTGGAATACACTTCTTCCTTCT 58.906 41.667 0.00 0.00 41.29 2.85
2206 2225 5.946377 GGTTTTCTTCATCCTGGAATACACT 59.054 40.000 0.00 0.00 0.00 3.55
2210 2229 5.414454 CGTTGGTTTTCTTCATCCTGGAATA 59.586 40.000 0.00 0.00 0.00 1.75
2211 2230 4.218417 CGTTGGTTTTCTTCATCCTGGAAT 59.782 41.667 0.00 0.00 0.00 3.01
2214 2233 3.146066 TCGTTGGTTTTCTTCATCCTGG 58.854 45.455 0.00 0.00 0.00 4.45
2227 2246 1.740296 CCGCCTCGATTCGTTGGTT 60.740 57.895 17.15 0.00 0.00 3.67
2228 2247 2.125673 CCGCCTCGATTCGTTGGT 60.126 61.111 17.15 0.00 0.00 3.67
2229 2248 2.125673 ACCGCCTCGATTCGTTGG 60.126 61.111 5.89 10.59 0.00 3.77
2234 2253 1.062587 CATCAAACACCGCCTCGATTC 59.937 52.381 0.00 0.00 0.00 2.52
2238 2257 1.970917 GCTCATCAAACACCGCCTCG 61.971 60.000 0.00 0.00 0.00 4.63
2242 2261 0.955428 TGGAGCTCATCAAACACCGC 60.955 55.000 17.19 0.00 0.00 5.68
2243 2262 0.798776 GTGGAGCTCATCAAACACCG 59.201 55.000 17.19 0.00 0.00 4.94
2260 2279 3.545124 TTAGGCGCTGTGGTGGGTG 62.545 63.158 7.64 0.00 0.00 4.61
2270 2289 2.168496 TGACAAGAGTACTTAGGCGCT 58.832 47.619 7.64 0.00 34.70 5.92
2272 2291 3.130516 TGGATGACAAGAGTACTTAGGCG 59.869 47.826 0.00 0.00 34.70 5.52
2273 2292 4.737855 TGGATGACAAGAGTACTTAGGC 57.262 45.455 0.00 0.00 34.70 3.93
2288 2307 4.626287 GCAGACCAAAGTATCCTTGGATGA 60.626 45.833 12.08 0.00 0.00 2.92
2320 2339 3.339141 GGTCCTCTGTTCTCATCCAAAC 58.661 50.000 0.00 0.00 0.00 2.93
2347 2366 1.261619 CGTCAGAACAACCAAGCACTC 59.738 52.381 0.00 0.00 0.00 3.51
2350 2369 1.872952 CATCGTCAGAACAACCAAGCA 59.127 47.619 0.00 0.00 0.00 3.91
2351 2370 1.197721 CCATCGTCAGAACAACCAAGC 59.802 52.381 0.00 0.00 0.00 4.01
2353 2372 2.920724 TCCATCGTCAGAACAACCAA 57.079 45.000 0.00 0.00 0.00 3.67
2427 2446 4.434520 CTCGTTGAATCTTAAGGACCTCC 58.565 47.826 1.85 0.00 0.00 4.30
2428 2447 3.866327 GCTCGTTGAATCTTAAGGACCTC 59.134 47.826 1.85 0.00 0.00 3.85
2443 2462 2.825836 GATGGCTGGGGCTCGTTG 60.826 66.667 0.00 0.00 38.73 4.10
2464 2483 0.482446 AAGAATTCAGGCCCCACACA 59.518 50.000 8.44 0.00 0.00 3.72
2469 2488 1.847088 ACTCCTAAGAATTCAGGCCCC 59.153 52.381 8.44 0.00 0.00 5.80
2484 2503 2.428890 GTCATGATGTTCGGAGACTCCT 59.571 50.000 19.39 0.00 34.32 3.69
2490 2509 2.544685 GTCTGGTCATGATGTTCGGAG 58.455 52.381 0.00 0.00 0.00 4.63
2503 2522 1.935933 AACATAATCGCCGTCTGGTC 58.064 50.000 0.00 0.00 37.67 4.02
2513 2532 4.335082 TGCAAACGAGGAAACATAATCG 57.665 40.909 0.00 0.00 40.86 3.34
2516 2535 5.240623 AGTTCATGCAAACGAGGAAACATAA 59.759 36.000 0.00 0.00 34.27 1.90
2526 2545 2.254546 AGACCAGTTCATGCAAACGA 57.745 45.000 0.00 0.00 34.27 3.85
2583 2602 3.673902 GGGCATGGCATTTAACTGTTTT 58.326 40.909 22.06 0.00 0.00 2.43
2584 2603 2.353605 CGGGCATGGCATTTAACTGTTT 60.354 45.455 22.06 0.00 0.00 2.83
2630 2649 2.225467 GAAAGCTCCTCAGTTTGCAGT 58.775 47.619 0.00 0.00 0.00 4.40
2669 2688 0.884704 TCGTCTCAAAGCCCTTGCAC 60.885 55.000 0.00 0.00 41.13 4.57
2670 2689 0.036732 ATCGTCTCAAAGCCCTTGCA 59.963 50.000 0.00 0.00 41.13 4.08
2694 2713 0.110373 GGTTTTGAGCCGCAGTAACG 60.110 55.000 0.00 0.00 0.00 3.18
2695 2714 1.069227 CAGGTTTTGAGCCGCAGTAAC 60.069 52.381 0.00 0.00 0.00 2.50
2700 2719 0.465460 AGTTCAGGTTTTGAGCCGCA 60.465 50.000 0.00 0.00 37.72 5.69
2708 2727 8.624776 CAAAACTATCAAGAGAGTTCAGGTTTT 58.375 33.333 10.17 0.00 41.47 2.43
2715 2734 7.172361 ACAGAAGCAAAACTATCAAGAGAGTTC 59.828 37.037 10.17 0.00 41.47 3.01
2752 2771 2.159881 GCGTTGGACTGAAATACACGTC 60.160 50.000 0.00 0.00 0.00 4.34
2754 2773 2.066262 AGCGTTGGACTGAAATACACG 58.934 47.619 0.00 0.00 0.00 4.49
2771 2790 5.157781 GGAGATTAGCTATACTTGTCAGCG 58.842 45.833 0.00 0.00 40.29 5.18
2811 2830 3.128589 GCTTCGGGCAGAAAATGATTGTA 59.871 43.478 0.96 0.00 38.57 2.41
2829 2848 4.154918 ACACCAATCAATTTCTCGAGCTTC 59.845 41.667 7.81 0.00 0.00 3.86
2835 2854 4.726416 CAGGAACACCAATCAATTTCTCG 58.274 43.478 0.00 0.00 0.00 4.04
2840 2859 4.322953 GGATTGCAGGAACACCAATCAATT 60.323 41.667 12.79 0.00 44.26 2.32
2871 2890 3.181447 CCATGTCATAATCCTCCAGCACT 60.181 47.826 0.00 0.00 0.00 4.40
3031 3050 0.450583 CCATCATGCGCATATGCCTC 59.549 55.000 24.84 13.94 37.91 4.70
3108 3127 2.293399 GGAAGAGCGTTGGTTGATGTTT 59.707 45.455 0.00 0.00 0.00 2.83
3116 3135 1.308998 CAGTTTGGAAGAGCGTTGGT 58.691 50.000 0.00 0.00 0.00 3.67
3181 3200 9.995003 ATTAATTACAAGCAACATGGAAAGAAA 57.005 25.926 0.00 0.00 0.00 2.52
3246 3265 2.675348 GCTATTGCCAGAGTCAGTCAAC 59.325 50.000 0.00 0.00 0.00 3.18
3300 3319 3.217626 CCAAGAAGTTGTTCTGCCTCTT 58.782 45.455 0.00 0.00 42.59 2.85
3339 3358 9.392259 GGTAATTTAATAAACTACCTGCTGAGT 57.608 33.333 14.15 0.00 31.19 3.41
3362 3381 0.896923 ACGCCAAGAACGTATGGGTA 59.103 50.000 14.57 0.00 43.02 3.69
3376 3395 1.466950 GAAAATGGACAATCGACGCCA 59.533 47.619 0.00 0.00 34.45 5.69
3464 3483 0.389817 TTGCCGACTCACTGGATTCG 60.390 55.000 0.00 0.00 43.45 3.34
3467 3486 1.478510 CTACTTGCCGACTCACTGGAT 59.521 52.381 0.00 0.00 0.00 3.41
3637 3656 7.254852 ACTGAAATTTACGAAAACTTCAAGCA 58.745 30.769 0.00 0.00 30.62 3.91
3648 3667 4.758165 GGGAAGGTGACTGAAATTTACGAA 59.242 41.667 0.00 0.00 42.68 3.85
3711 3730 6.519721 GCAGACTATATGGGATGAGATGTGTT 60.520 42.308 0.00 0.00 0.00 3.32
3752 3771 9.262472 GTGCAATTTTACTAAGATGTAACTTCG 57.738 33.333 0.00 0.00 32.84 3.79
3790 3809 8.774890 TGCACAGCATTTACAATGAAATTATT 57.225 26.923 0.49 0.00 29.92 1.40
4019 4038 3.016474 GAGTTCGGCAGCTTCGTGC 62.016 63.158 6.18 0.00 43.19 5.34
4023 4042 1.230635 TGCTTGAGTTCGGCAGCTTC 61.231 55.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.