Multiple sequence alignment - TraesCS5D01G427900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G427900 chr5D 100.000 3353 0 0 1 3353 486011967 486008615 0.000000e+00 6192.0
1 TraesCS5D01G427900 chr5D 88.602 1509 94 19 1513 2967 426479876 426481360 0.000000e+00 1762.0
2 TraesCS5D01G427900 chr5D 93.289 298 19 1 1 297 23170511 23170808 3.970000e-119 438.0
3 TraesCS5D01G427900 chr5D 93.289 298 17 3 3 297 482319369 482319072 1.430000e-118 436.0
4 TraesCS5D01G427900 chr5D 93.846 260 11 3 3095 3353 430989208 430988953 1.460000e-103 387.0
5 TraesCS5D01G427900 chr7A 94.184 1685 82 5 1680 3353 546537501 546539180 0.000000e+00 2555.0
6 TraesCS5D01G427900 chr7A 94.322 1092 58 2 1680 2767 126758818 126759909 0.000000e+00 1670.0
7 TraesCS5D01G427900 chr7A 90.465 839 63 12 602 1425 126757607 126758443 0.000000e+00 1090.0
8 TraesCS5D01G427900 chr7A 92.513 561 23 8 2806 3353 126759907 126760461 0.000000e+00 785.0
9 TraesCS5D01G427900 chr7A 94.479 163 9 0 1345 1507 126758608 126758770 5.550000e-63 252.0
10 TraesCS5D01G427900 chr7A 93.125 160 11 0 1345 1504 546537291 546537450 5.590000e-58 235.0
11 TraesCS5D01G427900 chr2D 93.099 1623 72 17 1000 2602 125177805 125179407 0.000000e+00 2340.0
12 TraesCS5D01G427900 chr2D 91.794 1438 57 16 1610 3009 625377106 625375692 0.000000e+00 1945.0
13 TraesCS5D01G427900 chr2D 90.580 828 40 20 602 1424 625378060 625377266 0.000000e+00 1062.0
14 TraesCS5D01G427900 chr2D 94.631 298 15 1 1 297 169594705 169595002 8.480000e-126 460.0
15 TraesCS5D01G427900 chr2D 95.031 161 8 0 1347 1507 625377264 625377104 1.540000e-63 254.0
16 TraesCS5D01G427900 chr2D 92.157 51 2 1 2997 3045 625375751 625375701 1.670000e-08 71.3
17 TraesCS5D01G427900 chr1D 91.747 1454 61 21 1610 3009 56887366 56888814 0.000000e+00 1965.0
18 TraesCS5D01G427900 chr1D 90.725 841 54 9 603 1425 56886372 56887206 0.000000e+00 1099.0
19 TraesCS5D01G427900 chr1D 96.284 296 11 0 2 297 31666273 31665978 1.400000e-133 486.0
20 TraesCS5D01G427900 chr1D 95.000 260 8 4 3095 3353 56888806 56889061 1.450000e-108 403.0
21 TraesCS5D01G427900 chr1D 94.231 260 10 3 3095 3353 460799293 460799548 3.140000e-105 392.0
22 TraesCS5D01G427900 chr1D 91.589 214 13 5 2799 3009 460799090 460799301 1.180000e-74 291.0
23 TraesCS5D01G427900 chr1D 93.902 164 9 1 1345 1507 56887205 56887368 2.580000e-61 246.0
24 TraesCS5D01G427900 chr3D 89.429 1523 72 31 1513 2961 600643091 600644598 0.000000e+00 1838.0
25 TraesCS5D01G427900 chr3D 90.473 1354 87 16 1513 2834 545926855 545928198 0.000000e+00 1748.0
26 TraesCS5D01G427900 chr3D 94.139 819 42 6 602 1416 600641947 600642763 0.000000e+00 1242.0
27 TraesCS5D01G427900 chr3D 92.905 296 20 1 1 295 549766020 549765725 2.390000e-116 429.0
28 TraesCS5D01G427900 chr3B 90.916 1376 62 20 1610 2967 615635983 615637313 0.000000e+00 1790.0
29 TraesCS5D01G427900 chr3B 88.627 932 72 21 602 1507 615635062 615635985 0.000000e+00 1103.0
30 TraesCS5D01G427900 chrUn 91.046 1329 62 11 1617 2945 26235391 26234120 0.000000e+00 1742.0
31 TraesCS5D01G427900 chrUn 93.372 513 19 6 2846 3353 30902779 30903281 0.000000e+00 745.0
32 TraesCS5D01G427900 chrUn 94.444 162 9 0 1345 1506 30901498 30901659 2.000000e-62 250.0
33 TraesCS5D01G427900 chr6A 95.640 1078 46 1 1613 2690 36382066 36380990 0.000000e+00 1729.0
34 TraesCS5D01G427900 chr6A 91.103 843 55 14 602 1436 36383051 36382221 0.000000e+00 1123.0
35 TraesCS5D01G427900 chr6A 87.908 306 24 10 2714 3009 36380909 36380607 6.890000e-92 348.0
36 TraesCS5D01G427900 chr6A 96.296 162 6 0 1345 1506 36382229 36382068 1.980000e-67 267.0
37 TraesCS5D01G427900 chr6A 95.000 40 2 0 3006 3045 36380655 36380616 2.790000e-06 63.9
38 TraesCS5D01G427900 chr5A 95.190 1081 49 1 1610 2690 214948471 214947394 0.000000e+00 1705.0
39 TraesCS5D01G427900 chr5A 94.042 1091 59 3 1683 2767 426559957 426558867 0.000000e+00 1650.0
40 TraesCS5D01G427900 chr5A 91.687 830 57 8 602 1425 214949453 214948630 0.000000e+00 1140.0
41 TraesCS5D01G427900 chr5A 91.979 561 20 11 2806 3353 426558869 426558321 0.000000e+00 763.0
42 TraesCS5D01G427900 chr5A 91.205 307 16 4 302 601 606776321 606776019 1.120000e-109 407.0
43 TraesCS5D01G427900 chr5A 87.662 308 23 13 2714 3009 214947318 214947014 8.910000e-91 344.0
44 TraesCS5D01G427900 chr5A 95.706 163 7 0 1345 1507 214948631 214948469 2.570000e-66 263.0
45 TraesCS5D01G427900 chr5A 94.444 162 9 0 1346 1507 426560169 426560008 2.000000e-62 250.0
46 TraesCS5D01G427900 chr5A 92.157 51 2 1 2997 3045 214947073 214947023 1.670000e-08 71.3
47 TraesCS5D01G427900 chr7D 90.369 1329 71 21 1617 2945 550879268 550880539 0.000000e+00 1692.0
48 TraesCS5D01G427900 chr7D 94.314 299 15 2 1 297 35488161 35488459 1.100000e-124 457.0
49 TraesCS5D01G427900 chr7D 93.289 298 19 1 1 297 580653865 580654162 3.970000e-119 438.0
50 TraesCS5D01G427900 chr2B 89.903 1337 78 20 1610 2946 36421219 36419940 0.000000e+00 1668.0
51 TraesCS5D01G427900 chr6B 91.718 1135 78 10 1717 2842 515041679 515040552 0.000000e+00 1561.0
52 TraesCS5D01G427900 chr6B 89.316 833 74 11 600 1420 558628367 558629196 0.000000e+00 1031.0
53 TraesCS5D01G427900 chr6B 88.794 821 78 10 609 1416 515042920 515042101 0.000000e+00 994.0
54 TraesCS5D01G427900 chr1A 93.177 513 20 6 2846 3353 556695878 556696380 0.000000e+00 739.0
55 TraesCS5D01G427900 chr1A 94.444 162 9 0 1345 1506 556694559 556694720 2.000000e-62 250.0
56 TraesCS5D01G427900 chr6D 93.243 296 18 2 1 294 428196316 428196021 5.140000e-118 435.0
57 TraesCS5D01G427900 chr4D 92.617 298 18 3 1 297 143564124 143563830 3.090000e-115 425.0
58 TraesCS5D01G427900 chr4D 93.462 260 12 3 3095 3353 374043395 374043650 6.790000e-102 381.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G427900 chr5D 486008615 486011967 3352 True 6192.000000 6192 100.000000 1 3353 1 chr5D.!!$R3 3352
1 TraesCS5D01G427900 chr5D 426479876 426481360 1484 False 1762.000000 1762 88.602000 1513 2967 1 chr5D.!!$F2 1454
2 TraesCS5D01G427900 chr7A 546537291 546539180 1889 False 1395.000000 2555 93.654500 1345 3353 2 chr7A.!!$F2 2008
3 TraesCS5D01G427900 chr7A 126757607 126760461 2854 False 949.250000 1670 92.944750 602 3353 4 chr7A.!!$F1 2751
4 TraesCS5D01G427900 chr2D 125177805 125179407 1602 False 2340.000000 2340 93.099000 1000 2602 1 chr2D.!!$F1 1602
5 TraesCS5D01G427900 chr2D 625375692 625378060 2368 True 833.075000 1945 92.390500 602 3045 4 chr2D.!!$R1 2443
6 TraesCS5D01G427900 chr1D 56886372 56889061 2689 False 928.250000 1965 92.843500 603 3353 4 chr1D.!!$F1 2750
7 TraesCS5D01G427900 chr3D 545926855 545928198 1343 False 1748.000000 1748 90.473000 1513 2834 1 chr3D.!!$F1 1321
8 TraesCS5D01G427900 chr3D 600641947 600644598 2651 False 1540.000000 1838 91.784000 602 2961 2 chr3D.!!$F2 2359
9 TraesCS5D01G427900 chr3B 615635062 615637313 2251 False 1446.500000 1790 89.771500 602 2967 2 chr3B.!!$F1 2365
10 TraesCS5D01G427900 chrUn 26234120 26235391 1271 True 1742.000000 1742 91.046000 1617 2945 1 chrUn.!!$R1 1328
11 TraesCS5D01G427900 chrUn 30901498 30903281 1783 False 497.500000 745 93.908000 1345 3353 2 chrUn.!!$F1 2008
12 TraesCS5D01G427900 chr6A 36380607 36383051 2444 True 706.180000 1729 93.189400 602 3045 5 chr6A.!!$R1 2443
13 TraesCS5D01G427900 chr5A 426558321 426560169 1848 True 887.666667 1650 93.488333 1346 3353 3 chr5A.!!$R3 2007
14 TraesCS5D01G427900 chr5A 214947014 214949453 2439 True 704.660000 1705 92.480400 602 3045 5 chr5A.!!$R2 2443
15 TraesCS5D01G427900 chr7D 550879268 550880539 1271 False 1692.000000 1692 90.369000 1617 2945 1 chr7D.!!$F2 1328
16 TraesCS5D01G427900 chr2B 36419940 36421219 1279 True 1668.000000 1668 89.903000 1610 2946 1 chr2B.!!$R1 1336
17 TraesCS5D01G427900 chr6B 515040552 515042920 2368 True 1277.500000 1561 90.256000 609 2842 2 chr6B.!!$R1 2233
18 TraesCS5D01G427900 chr6B 558628367 558629196 829 False 1031.000000 1031 89.316000 600 1420 1 chr6B.!!$F1 820
19 TraesCS5D01G427900 chr1A 556694559 556696380 1821 False 494.500000 739 93.810500 1345 3353 2 chr1A.!!$F1 2008

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
352 353 0.034186 TCATCAGCGCAAGGGGAAAT 60.034 50.0 11.47 0.0 38.28 2.17 F
353 354 0.101759 CATCAGCGCAAGGGGAAATG 59.898 55.0 11.47 0.0 38.28 2.32 F
356 357 0.109132 CAGCGCAAGGGGAAATGTTC 60.109 55.0 11.47 0.0 38.28 3.18 F
358 359 0.109132 GCGCAAGGGGAAATGTTCAG 60.109 55.0 0.30 0.0 38.28 3.02 F
524 525 0.112995 AAGCAGAAACATGAGGGGCA 59.887 50.0 0.00 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1508 2265 0.036875 AACTGGTACTCCAAGCAGGC 59.963 55.000 7.83 0.00 46.77 4.85 R
1511 2268 0.472044 TGCAACTGGTACTCCAAGCA 59.528 50.000 0.00 0.00 43.81 3.91 R
2120 3036 3.244249 CCGAGAAAGTTTCTGGGTCTCTT 60.244 47.826 29.14 3.62 46.81 2.85 R
2141 3057 3.334583 TGACCAGCAGTTCATACTTCC 57.665 47.619 0.00 0.00 30.26 3.46 R
2406 3326 4.082125 TCTCCTTCAGCTTTTCATTTCCC 58.918 43.478 0.00 0.00 0.00 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 9.825109 TGTCGGACATAAATATACAAAATGAGA 57.175 29.630 6.76 0.00 0.00 3.27
161 162 8.974060 TTCTAGTTAGAATGTTTTGTTGTCCT 57.026 30.769 0.00 0.00 37.40 3.85
163 164 9.485206 TCTAGTTAGAATGTTTTGTTGTCCTAC 57.515 33.333 0.00 0.00 0.00 3.18
164 165 9.268268 CTAGTTAGAATGTTTTGTTGTCCTACA 57.732 33.333 0.00 0.00 0.00 2.74
165 166 8.514330 AGTTAGAATGTTTTGTTGTCCTACAA 57.486 30.769 0.00 0.00 35.42 2.41
166 167 8.962679 AGTTAGAATGTTTTGTTGTCCTACAAA 58.037 29.630 3.48 3.48 44.01 2.83
167 168 9.233232 GTTAGAATGTTTTGTTGTCCTACAAAG 57.767 33.333 7.02 0.00 45.63 2.77
168 169 7.404671 AGAATGTTTTGTTGTCCTACAAAGT 57.595 32.000 7.02 0.00 45.63 2.66
169 170 7.836842 AGAATGTTTTGTTGTCCTACAAAGTT 58.163 30.769 7.02 5.02 45.63 2.66
170 171 8.311109 AGAATGTTTTGTTGTCCTACAAAGTTT 58.689 29.630 7.02 3.91 45.63 2.66
171 172 8.474006 AATGTTTTGTTGTCCTACAAAGTTTC 57.526 30.769 7.02 2.60 45.63 2.78
172 173 6.982852 TGTTTTGTTGTCCTACAAAGTTTCA 58.017 32.000 7.02 4.45 45.63 2.69
173 174 7.434492 TGTTTTGTTGTCCTACAAAGTTTCAA 58.566 30.769 7.02 0.00 45.63 2.69
174 175 7.596995 TGTTTTGTTGTCCTACAAAGTTTCAAG 59.403 33.333 7.02 0.00 45.63 3.02
175 176 6.827586 TTGTTGTCCTACAAAGTTTCAAGT 57.172 33.333 0.00 0.00 40.15 3.16
176 177 6.827586 TGTTGTCCTACAAAGTTTCAAGTT 57.172 33.333 0.00 0.00 40.15 2.66
177 178 6.848451 TGTTGTCCTACAAAGTTTCAAGTTC 58.152 36.000 0.00 0.00 40.15 3.01
178 179 6.431543 TGTTGTCCTACAAAGTTTCAAGTTCA 59.568 34.615 0.00 0.00 40.15 3.18
179 180 7.122055 TGTTGTCCTACAAAGTTTCAAGTTCAT 59.878 33.333 0.00 0.00 40.15 2.57
180 181 8.617809 GTTGTCCTACAAAGTTTCAAGTTCATA 58.382 33.333 0.00 0.00 40.15 2.15
181 182 8.918202 TGTCCTACAAAGTTTCAAGTTCATAT 57.082 30.769 0.00 0.00 0.00 1.78
182 183 8.783093 TGTCCTACAAAGTTTCAAGTTCATATG 58.217 33.333 0.00 0.00 0.00 1.78
183 184 8.784043 GTCCTACAAAGTTTCAAGTTCATATGT 58.216 33.333 1.90 0.00 0.00 2.29
184 185 9.349713 TCCTACAAAGTTTCAAGTTCATATGTT 57.650 29.630 1.90 0.00 0.00 2.71
185 186 9.398170 CCTACAAAGTTTCAAGTTCATATGTTG 57.602 33.333 1.90 0.45 0.00 3.33
186 187 9.950680 CTACAAAGTTTCAAGTTCATATGTTGT 57.049 29.630 1.90 4.20 0.00 3.32
188 189 9.301153 ACAAAGTTTCAAGTTCATATGTTGTTC 57.699 29.630 1.90 0.00 0.00 3.18
189 190 9.520204 CAAAGTTTCAAGTTCATATGTTGTTCT 57.480 29.630 1.90 0.00 0.00 3.01
230 231 9.940166 AAAAAGACAAAAATTACTCGTACGAAT 57.060 25.926 20.00 12.51 0.00 3.34
231 232 9.590088 AAAAGACAAAAATTACTCGTACGAATC 57.410 29.630 20.00 4.47 0.00 2.52
232 233 6.975126 AGACAAAAATTACTCGTACGAATCG 58.025 36.000 20.00 10.38 0.00 3.34
233 234 5.544621 ACAAAAATTACTCGTACGAATCGC 58.455 37.500 20.00 0.00 0.00 4.58
235 236 3.323729 AATTACTCGTACGAATCGCGA 57.676 42.857 20.00 13.09 44.57 5.87
236 237 3.532892 ATTACTCGTACGAATCGCGAT 57.467 42.857 17.62 17.62 44.57 4.58
237 238 2.289890 TACTCGTACGAATCGCGATG 57.710 50.000 24.47 13.82 44.57 3.84
238 239 0.376152 ACTCGTACGAATCGCGATGT 59.624 50.000 24.47 19.17 44.57 3.06
239 240 1.594397 ACTCGTACGAATCGCGATGTA 59.406 47.619 24.47 18.07 44.57 2.29
240 241 2.030823 ACTCGTACGAATCGCGATGTAA 59.969 45.455 24.47 5.97 44.57 2.41
241 242 3.031126 CTCGTACGAATCGCGATGTAAA 58.969 45.455 24.47 11.51 44.57 2.01
242 243 3.424487 TCGTACGAATCGCGATGTAAAA 58.576 40.909 24.47 9.72 44.57 1.52
243 244 3.850837 TCGTACGAATCGCGATGTAAAAA 59.149 39.130 24.47 7.41 44.57 1.94
244 245 4.500117 TCGTACGAATCGCGATGTAAAAAT 59.500 37.500 24.47 4.32 44.57 1.82
245 246 4.597492 CGTACGAATCGCGATGTAAAAATG 59.403 41.667 24.47 8.15 44.57 2.32
246 247 4.850859 ACGAATCGCGATGTAAAAATGA 57.149 36.364 24.47 0.00 44.57 2.57
247 248 5.211266 ACGAATCGCGATGTAAAAATGAA 57.789 34.783 24.47 0.00 44.57 2.57
248 249 5.806286 ACGAATCGCGATGTAAAAATGAAT 58.194 33.333 24.47 1.07 44.57 2.57
249 250 5.676744 ACGAATCGCGATGTAAAAATGAATG 59.323 36.000 24.47 2.99 44.57 2.67
250 251 5.113975 CGAATCGCGATGTAAAAATGAATGG 59.886 40.000 24.47 0.00 44.57 3.16
251 252 3.690422 TCGCGATGTAAAAATGAATGGC 58.310 40.909 3.71 0.00 0.00 4.40
252 253 3.127721 TCGCGATGTAAAAATGAATGGCA 59.872 39.130 3.71 0.00 0.00 4.92
253 254 3.856521 CGCGATGTAAAAATGAATGGCAA 59.143 39.130 0.00 0.00 0.00 4.52
254 255 4.027458 CGCGATGTAAAAATGAATGGCAAG 60.027 41.667 0.00 0.00 0.00 4.01
255 256 5.101628 GCGATGTAAAAATGAATGGCAAGA 58.898 37.500 0.00 0.00 0.00 3.02
256 257 5.750067 GCGATGTAAAAATGAATGGCAAGAT 59.250 36.000 0.00 0.00 0.00 2.40
257 258 6.917477 GCGATGTAAAAATGAATGGCAAGATA 59.083 34.615 0.00 0.00 0.00 1.98
258 259 7.434897 GCGATGTAAAAATGAATGGCAAGATAA 59.565 33.333 0.00 0.00 0.00 1.75
259 260 8.961092 CGATGTAAAAATGAATGGCAAGATAAG 58.039 33.333 0.00 0.00 0.00 1.73
260 261 9.252962 GATGTAAAAATGAATGGCAAGATAAGG 57.747 33.333 0.00 0.00 0.00 2.69
261 262 7.555087 TGTAAAAATGAATGGCAAGATAAGGG 58.445 34.615 0.00 0.00 0.00 3.95
262 263 5.619132 AAAATGAATGGCAAGATAAGGGG 57.381 39.130 0.00 0.00 0.00 4.79
263 264 2.754012 TGAATGGCAAGATAAGGGGG 57.246 50.000 0.00 0.00 0.00 5.40
264 265 1.929494 TGAATGGCAAGATAAGGGGGT 59.071 47.619 0.00 0.00 0.00 4.95
265 266 2.310538 GAATGGCAAGATAAGGGGGTG 58.689 52.381 0.00 0.00 0.00 4.61
266 267 1.308877 ATGGCAAGATAAGGGGGTGT 58.691 50.000 0.00 0.00 0.00 4.16
267 268 1.974028 TGGCAAGATAAGGGGGTGTA 58.026 50.000 0.00 0.00 0.00 2.90
268 269 1.843851 TGGCAAGATAAGGGGGTGTAG 59.156 52.381 0.00 0.00 0.00 2.74
269 270 1.143073 GGCAAGATAAGGGGGTGTAGG 59.857 57.143 0.00 0.00 0.00 3.18
270 271 2.124411 GCAAGATAAGGGGGTGTAGGA 58.876 52.381 0.00 0.00 0.00 2.94
271 272 2.508300 GCAAGATAAGGGGGTGTAGGAA 59.492 50.000 0.00 0.00 0.00 3.36
272 273 3.053917 GCAAGATAAGGGGGTGTAGGAAA 60.054 47.826 0.00 0.00 0.00 3.13
273 274 4.781934 CAAGATAAGGGGGTGTAGGAAAG 58.218 47.826 0.00 0.00 0.00 2.62
274 275 2.778270 AGATAAGGGGGTGTAGGAAAGC 59.222 50.000 0.00 0.00 0.00 3.51
275 276 1.292085 TAAGGGGGTGTAGGAAAGCC 58.708 55.000 0.00 0.00 34.32 4.35
277 278 0.420272 AGGGGGTGTAGGAAAGCCTA 59.580 55.000 0.00 0.00 44.74 3.93
297 298 6.856895 GCCTATGCTTTCTCAAATGTTAACT 58.143 36.000 7.22 0.00 33.53 2.24
298 299 6.749118 GCCTATGCTTTCTCAAATGTTAACTG 59.251 38.462 7.22 0.00 33.53 3.16
299 300 7.362056 GCCTATGCTTTCTCAAATGTTAACTGA 60.362 37.037 7.22 1.61 33.53 3.41
300 301 8.180267 CCTATGCTTTCTCAAATGTTAACTGAG 58.820 37.037 14.26 14.26 38.34 3.35
301 302 6.317789 TGCTTTCTCAAATGTTAACTGAGG 57.682 37.500 18.23 7.98 37.71 3.86
302 303 5.157067 GCTTTCTCAAATGTTAACTGAGGC 58.843 41.667 18.23 12.43 37.71 4.70
303 304 5.356882 TTTCTCAAATGTTAACTGAGGCG 57.643 39.130 18.23 0.98 37.71 5.52
304 305 2.742053 TCTCAAATGTTAACTGAGGCGC 59.258 45.455 18.23 0.00 37.71 6.53
305 306 1.810151 TCAAATGTTAACTGAGGCGCC 59.190 47.619 21.89 21.89 0.00 6.53
306 307 1.812571 CAAATGTTAACTGAGGCGCCT 59.187 47.619 33.48 33.48 0.00 5.52
307 308 1.739067 AATGTTAACTGAGGCGCCTC 58.261 50.000 43.07 43.07 43.01 4.70
308 309 0.107654 ATGTTAACTGAGGCGCCTCC 60.108 55.000 44.85 31.23 42.09 4.30
309 310 1.810030 GTTAACTGAGGCGCCTCCG 60.810 63.158 44.85 40.92 42.09 4.63
338 339 3.776849 CTGCGCGCACGTTCATCA 61.777 61.111 33.09 5.60 42.83 3.07
339 340 3.691154 CTGCGCGCACGTTCATCAG 62.691 63.158 33.09 13.74 42.83 2.90
343 344 3.776849 CGCACGTTCATCAGCGCA 61.777 61.111 11.47 0.00 43.80 6.09
344 345 2.555782 GCACGTTCATCAGCGCAA 59.444 55.556 11.47 0.00 0.00 4.85
345 346 1.510623 GCACGTTCATCAGCGCAAG 60.511 57.895 11.47 0.72 43.44 4.01
346 347 1.133253 CACGTTCATCAGCGCAAGG 59.867 57.895 11.47 2.53 38.28 3.61
347 348 2.034879 ACGTTCATCAGCGCAAGGG 61.035 57.895 11.47 0.00 38.28 3.95
348 349 2.753966 CGTTCATCAGCGCAAGGGG 61.754 63.158 11.47 0.00 38.28 4.79
349 350 1.377202 GTTCATCAGCGCAAGGGGA 60.377 57.895 11.47 0.00 38.28 4.81
350 351 0.960364 GTTCATCAGCGCAAGGGGAA 60.960 55.000 11.47 3.64 38.28 3.97
351 352 0.251121 TTCATCAGCGCAAGGGGAAA 60.251 50.000 11.47 0.00 38.28 3.13
352 353 0.034186 TCATCAGCGCAAGGGGAAAT 60.034 50.000 11.47 0.00 38.28 2.17
353 354 0.101759 CATCAGCGCAAGGGGAAATG 59.898 55.000 11.47 0.00 38.28 2.32
354 355 0.323725 ATCAGCGCAAGGGGAAATGT 60.324 50.000 11.47 0.00 38.28 2.71
355 356 0.539438 TCAGCGCAAGGGGAAATGTT 60.539 50.000 11.47 0.00 38.28 2.71
356 357 0.109132 CAGCGCAAGGGGAAATGTTC 60.109 55.000 11.47 0.00 38.28 3.18
357 358 0.539438 AGCGCAAGGGGAAATGTTCA 60.539 50.000 11.47 0.00 38.28 3.18
358 359 0.109132 GCGCAAGGGGAAATGTTCAG 60.109 55.000 0.30 0.00 38.28 3.02
359 360 1.533625 CGCAAGGGGAAATGTTCAGA 58.466 50.000 0.00 0.00 0.00 3.27
360 361 1.200020 CGCAAGGGGAAATGTTCAGAC 59.800 52.381 0.00 0.00 0.00 3.51
361 362 2.519013 GCAAGGGGAAATGTTCAGACT 58.481 47.619 0.00 0.00 0.00 3.24
362 363 2.893489 GCAAGGGGAAATGTTCAGACTT 59.107 45.455 0.00 0.00 0.00 3.01
363 364 3.057245 GCAAGGGGAAATGTTCAGACTTC 60.057 47.826 0.00 0.00 0.00 3.01
364 365 3.059352 AGGGGAAATGTTCAGACTTCG 57.941 47.619 0.00 0.00 0.00 3.79
365 366 2.084546 GGGGAAATGTTCAGACTTCGG 58.915 52.381 0.00 0.00 0.00 4.30
366 367 2.290071 GGGGAAATGTTCAGACTTCGGA 60.290 50.000 0.00 0.00 0.00 4.55
367 368 3.003480 GGGAAATGTTCAGACTTCGGAG 58.997 50.000 0.00 0.00 0.00 4.63
368 369 3.306780 GGGAAATGTTCAGACTTCGGAGA 60.307 47.826 0.00 0.00 0.00 3.71
369 370 4.508662 GGAAATGTTCAGACTTCGGAGAT 58.491 43.478 0.00 0.00 35.04 2.75
370 371 4.568760 GGAAATGTTCAGACTTCGGAGATC 59.431 45.833 0.00 0.00 35.04 2.75
371 372 3.810310 ATGTTCAGACTTCGGAGATCC 57.190 47.619 0.00 0.00 35.04 3.36
385 386 3.665190 GGAGATCCGAACAAGAAACAGT 58.335 45.455 0.00 0.00 0.00 3.55
386 387 4.817517 GGAGATCCGAACAAGAAACAGTA 58.182 43.478 0.00 0.00 0.00 2.74
387 388 4.865365 GGAGATCCGAACAAGAAACAGTAG 59.135 45.833 0.00 0.00 0.00 2.57
388 389 4.822026 AGATCCGAACAAGAAACAGTAGG 58.178 43.478 0.00 0.00 0.00 3.18
389 390 3.396260 TCCGAACAAGAAACAGTAGGG 57.604 47.619 0.00 0.00 0.00 3.53
390 391 2.038033 TCCGAACAAGAAACAGTAGGGG 59.962 50.000 0.00 0.00 0.00 4.79
391 392 1.804748 CGAACAAGAAACAGTAGGGGC 59.195 52.381 0.00 0.00 0.00 5.80
392 393 2.808933 CGAACAAGAAACAGTAGGGGCA 60.809 50.000 0.00 0.00 0.00 5.36
393 394 3.219281 GAACAAGAAACAGTAGGGGCAA 58.781 45.455 0.00 0.00 0.00 4.52
394 395 2.863809 ACAAGAAACAGTAGGGGCAAG 58.136 47.619 0.00 0.00 0.00 4.01
395 396 2.441750 ACAAGAAACAGTAGGGGCAAGA 59.558 45.455 0.00 0.00 0.00 3.02
396 397 3.077359 CAAGAAACAGTAGGGGCAAGAG 58.923 50.000 0.00 0.00 0.00 2.85
397 398 2.621070 AGAAACAGTAGGGGCAAGAGA 58.379 47.619 0.00 0.00 0.00 3.10
398 399 3.185455 AGAAACAGTAGGGGCAAGAGAT 58.815 45.455 0.00 0.00 0.00 2.75
399 400 3.198853 AGAAACAGTAGGGGCAAGAGATC 59.801 47.826 0.00 0.00 0.00 2.75
400 401 2.559381 ACAGTAGGGGCAAGAGATCT 57.441 50.000 0.00 0.00 0.00 2.75
401 402 3.689872 ACAGTAGGGGCAAGAGATCTA 57.310 47.619 0.00 0.00 0.00 1.98
402 403 4.206244 ACAGTAGGGGCAAGAGATCTAT 57.794 45.455 0.00 0.00 0.00 1.98
403 404 4.156477 ACAGTAGGGGCAAGAGATCTATC 58.844 47.826 0.00 0.00 0.00 2.08
404 405 3.192422 CAGTAGGGGCAAGAGATCTATCG 59.808 52.174 0.00 0.00 0.00 2.92
405 406 2.685106 AGGGGCAAGAGATCTATCGA 57.315 50.000 0.00 0.00 0.00 3.59
406 407 2.964209 AGGGGCAAGAGATCTATCGAA 58.036 47.619 0.00 0.00 0.00 3.71
407 408 3.309296 AGGGGCAAGAGATCTATCGAAA 58.691 45.455 0.00 0.00 0.00 3.46
408 409 3.906846 AGGGGCAAGAGATCTATCGAAAT 59.093 43.478 0.00 0.00 0.00 2.17
409 410 3.999663 GGGGCAAGAGATCTATCGAAATG 59.000 47.826 0.00 0.00 0.00 2.32
410 411 4.262635 GGGGCAAGAGATCTATCGAAATGA 60.263 45.833 0.00 0.00 0.00 2.57
411 412 5.300752 GGGCAAGAGATCTATCGAAATGAA 58.699 41.667 0.00 0.00 0.00 2.57
412 413 5.760253 GGGCAAGAGATCTATCGAAATGAAA 59.240 40.000 0.00 0.00 0.00 2.69
413 414 6.260936 GGGCAAGAGATCTATCGAAATGAAAA 59.739 38.462 0.00 0.00 0.00 2.29
414 415 7.201732 GGGCAAGAGATCTATCGAAATGAAAAA 60.202 37.037 0.00 0.00 0.00 1.94
415 416 8.348507 GGCAAGAGATCTATCGAAATGAAAAAT 58.651 33.333 0.00 0.00 0.00 1.82
416 417 9.727627 GCAAGAGATCTATCGAAATGAAAAATT 57.272 29.630 0.00 0.00 0.00 1.82
422 423 9.387123 GATCTATCGAAATGAAAAATTACCAGC 57.613 33.333 0.00 0.00 0.00 4.85
423 424 8.275015 TCTATCGAAATGAAAAATTACCAGCA 57.725 30.769 0.00 0.00 0.00 4.41
424 425 8.735315 TCTATCGAAATGAAAAATTACCAGCAA 58.265 29.630 0.00 0.00 0.00 3.91
425 426 7.816945 ATCGAAATGAAAAATTACCAGCAAG 57.183 32.000 0.00 0.00 0.00 4.01
426 427 6.744112 TCGAAATGAAAAATTACCAGCAAGT 58.256 32.000 0.00 0.00 0.00 3.16
427 428 7.206687 TCGAAATGAAAAATTACCAGCAAGTT 58.793 30.769 0.00 0.00 0.00 2.66
428 429 7.168972 TCGAAATGAAAAATTACCAGCAAGTTG 59.831 33.333 0.00 0.00 0.00 3.16
429 430 7.042791 CGAAATGAAAAATTACCAGCAAGTTGT 60.043 33.333 4.48 0.00 0.00 3.32
430 431 7.481275 AATGAAAAATTACCAGCAAGTTGTG 57.519 32.000 4.48 1.94 0.00 3.33
443 444 3.825308 CAAGTTGTGCATGTGTATGACC 58.175 45.455 0.00 0.00 36.36 4.02
444 445 2.436417 AGTTGTGCATGTGTATGACCC 58.564 47.619 0.00 0.00 36.36 4.46
445 446 1.130373 GTTGTGCATGTGTATGACCCG 59.870 52.381 0.00 0.00 36.36 5.28
446 447 0.610687 TGTGCATGTGTATGACCCGA 59.389 50.000 0.00 0.00 36.36 5.14
447 448 1.290203 GTGCATGTGTATGACCCGAG 58.710 55.000 0.00 0.00 36.36 4.63
448 449 0.461870 TGCATGTGTATGACCCGAGC 60.462 55.000 0.00 0.00 36.36 5.03
449 450 1.160329 GCATGTGTATGACCCGAGCC 61.160 60.000 0.00 0.00 36.36 4.70
450 451 0.465705 CATGTGTATGACCCGAGCCT 59.534 55.000 0.00 0.00 36.36 4.58
451 452 0.465705 ATGTGTATGACCCGAGCCTG 59.534 55.000 0.00 0.00 0.00 4.85
452 453 1.144057 GTGTATGACCCGAGCCTGG 59.856 63.158 0.00 0.00 0.00 4.45
453 454 2.109181 GTATGACCCGAGCCTGGC 59.891 66.667 11.65 11.65 0.00 4.85
454 455 3.161450 TATGACCCGAGCCTGGCC 61.161 66.667 16.57 6.06 0.00 5.36
461 462 4.473520 CGAGCCTGGCCGTTGGAT 62.474 66.667 16.57 6.57 0.00 3.41
462 463 2.825836 GAGCCTGGCCGTTGGATG 60.826 66.667 16.57 0.00 0.00 3.51
463 464 3.329542 GAGCCTGGCCGTTGGATGA 62.330 63.158 16.57 0.00 0.00 2.92
464 465 3.134127 GCCTGGCCGTTGGATGAC 61.134 66.667 7.66 0.00 0.00 3.06
465 466 2.350895 CCTGGCCGTTGGATGACA 59.649 61.111 0.00 0.00 0.00 3.58
466 467 2.040544 CCTGGCCGTTGGATGACAC 61.041 63.158 0.00 0.00 0.00 3.67
467 468 2.033448 TGGCCGTTGGATGACACC 59.967 61.111 0.00 0.00 0.00 4.16
468 469 3.124921 GGCCGTTGGATGACACCG 61.125 66.667 0.00 0.00 34.45 4.94
469 470 3.799755 GCCGTTGGATGACACCGC 61.800 66.667 0.00 0.00 33.19 5.68
470 471 2.358125 CCGTTGGATGACACCGCA 60.358 61.111 0.00 0.00 33.19 5.69
471 472 1.745115 CCGTTGGATGACACCGCAT 60.745 57.895 0.00 0.00 33.19 4.73
472 473 1.705337 CCGTTGGATGACACCGCATC 61.705 60.000 0.00 0.00 43.04 3.91
473 474 0.740868 CGTTGGATGACACCGCATCT 60.741 55.000 0.00 0.00 43.25 2.90
474 475 0.729116 GTTGGATGACACCGCATCTG 59.271 55.000 0.00 0.00 43.25 2.90
475 476 1.026182 TTGGATGACACCGCATCTGC 61.026 55.000 0.00 0.00 43.25 4.26
476 477 2.182842 GGATGACACCGCATCTGCC 61.183 63.158 0.00 0.00 43.25 4.85
477 478 1.153289 GATGACACCGCATCTGCCT 60.153 57.895 0.00 0.00 41.09 4.75
478 479 1.434622 GATGACACCGCATCTGCCTG 61.435 60.000 0.00 0.00 41.09 4.85
479 480 2.046892 GACACCGCATCTGCCTGT 60.047 61.111 0.00 0.00 37.91 4.00
480 481 2.359107 ACACCGCATCTGCCTGTG 60.359 61.111 14.46 14.46 42.48 3.66
481 482 3.807538 CACCGCATCTGCCTGTGC 61.808 66.667 6.57 0.00 34.87 4.57
483 484 4.790962 CCGCATCTGCCTGTGCCT 62.791 66.667 0.00 0.00 38.08 4.75
484 485 3.506096 CGCATCTGCCTGTGCCTG 61.506 66.667 0.00 0.00 38.08 4.85
485 486 2.045634 GCATCTGCCTGTGCCTGA 60.046 61.111 0.00 0.00 35.35 3.86
486 487 2.113433 GCATCTGCCTGTGCCTGAG 61.113 63.158 0.00 0.00 35.35 3.35
487 488 2.113433 CATCTGCCTGTGCCTGAGC 61.113 63.158 0.00 0.00 40.48 4.26
488 489 3.677284 ATCTGCCTGTGCCTGAGCG 62.677 63.158 0.00 0.00 44.31 5.03
508 509 1.576421 CGCAGGTGGAAGAACAAGC 59.424 57.895 0.00 0.00 0.00 4.01
509 510 1.165907 CGCAGGTGGAAGAACAAGCA 61.166 55.000 0.00 0.00 0.00 3.91
510 511 0.595095 GCAGGTGGAAGAACAAGCAG 59.405 55.000 0.00 0.00 0.00 4.24
511 512 1.815408 GCAGGTGGAAGAACAAGCAGA 60.815 52.381 0.00 0.00 0.00 4.26
512 513 2.575532 CAGGTGGAAGAACAAGCAGAA 58.424 47.619 0.00 0.00 0.00 3.02
513 514 2.951642 CAGGTGGAAGAACAAGCAGAAA 59.048 45.455 0.00 0.00 0.00 2.52
514 515 2.952310 AGGTGGAAGAACAAGCAGAAAC 59.048 45.455 0.00 0.00 0.00 2.78
515 516 2.687935 GGTGGAAGAACAAGCAGAAACA 59.312 45.455 0.00 0.00 0.00 2.83
516 517 3.319122 GGTGGAAGAACAAGCAGAAACAT 59.681 43.478 0.00 0.00 0.00 2.71
517 518 4.293415 GTGGAAGAACAAGCAGAAACATG 58.707 43.478 0.00 0.00 0.00 3.21
518 519 4.036734 GTGGAAGAACAAGCAGAAACATGA 59.963 41.667 0.00 0.00 0.00 3.07
519 520 4.276678 TGGAAGAACAAGCAGAAACATGAG 59.723 41.667 0.00 0.00 0.00 2.90
520 521 4.320788 GGAAGAACAAGCAGAAACATGAGG 60.321 45.833 0.00 0.00 0.00 3.86
521 522 3.152341 AGAACAAGCAGAAACATGAGGG 58.848 45.455 0.00 0.00 0.00 4.30
522 523 1.915141 ACAAGCAGAAACATGAGGGG 58.085 50.000 0.00 0.00 0.00 4.79
523 524 0.529378 CAAGCAGAAACATGAGGGGC 59.471 55.000 0.00 0.00 0.00 5.80
524 525 0.112995 AAGCAGAAACATGAGGGGCA 59.887 50.000 0.00 0.00 0.00 5.36
525 526 0.112995 AGCAGAAACATGAGGGGCAA 59.887 50.000 0.00 0.00 0.00 4.52
526 527 0.529378 GCAGAAACATGAGGGGCAAG 59.471 55.000 0.00 0.00 0.00 4.01
527 528 1.887956 GCAGAAACATGAGGGGCAAGA 60.888 52.381 0.00 0.00 0.00 3.02
528 529 2.089980 CAGAAACATGAGGGGCAAGAG 58.910 52.381 0.00 0.00 0.00 2.85
529 530 1.988107 AGAAACATGAGGGGCAAGAGA 59.012 47.619 0.00 0.00 0.00 3.10
530 531 2.579860 AGAAACATGAGGGGCAAGAGAT 59.420 45.455 0.00 0.00 0.00 2.75
531 532 3.011032 AGAAACATGAGGGGCAAGAGATT 59.989 43.478 0.00 0.00 0.00 2.40
532 533 2.431954 ACATGAGGGGCAAGAGATTG 57.568 50.000 0.00 0.00 0.00 2.67
533 534 1.637553 ACATGAGGGGCAAGAGATTGT 59.362 47.619 0.00 0.00 0.00 2.71
534 535 2.042162 ACATGAGGGGCAAGAGATTGTT 59.958 45.455 0.00 0.00 0.00 2.83
535 536 2.205022 TGAGGGGCAAGAGATTGTTG 57.795 50.000 0.00 0.00 0.00 3.33
536 537 1.704628 TGAGGGGCAAGAGATTGTTGA 59.295 47.619 0.00 0.00 0.00 3.18
537 538 2.309755 TGAGGGGCAAGAGATTGTTGAT 59.690 45.455 0.00 0.00 0.00 2.57
538 539 2.686915 GAGGGGCAAGAGATTGTTGATG 59.313 50.000 0.00 0.00 0.00 3.07
539 540 1.135721 GGGGCAAGAGATTGTTGATGC 59.864 52.381 0.00 0.00 0.00 3.91
540 541 2.097825 GGGCAAGAGATTGTTGATGCT 58.902 47.619 0.00 0.00 34.37 3.79
541 542 3.282021 GGGCAAGAGATTGTTGATGCTA 58.718 45.455 0.00 0.00 34.37 3.49
542 543 3.887716 GGGCAAGAGATTGTTGATGCTAT 59.112 43.478 0.00 0.00 34.37 2.97
543 544 4.261489 GGGCAAGAGATTGTTGATGCTATG 60.261 45.833 0.00 0.00 34.37 2.23
544 545 4.337555 GGCAAGAGATTGTTGATGCTATGT 59.662 41.667 0.00 0.00 34.37 2.29
545 546 5.528690 GGCAAGAGATTGTTGATGCTATGTA 59.471 40.000 0.00 0.00 34.37 2.29
546 547 6.206243 GGCAAGAGATTGTTGATGCTATGTAT 59.794 38.462 0.00 0.00 34.37 2.29
547 548 7.076362 GCAAGAGATTGTTGATGCTATGTATG 58.924 38.462 0.00 0.00 0.00 2.39
548 549 7.255035 GCAAGAGATTGTTGATGCTATGTATGT 60.255 37.037 0.00 0.00 0.00 2.29
549 550 9.264719 CAAGAGATTGTTGATGCTATGTATGTA 57.735 33.333 0.00 0.00 0.00 2.29
550 551 8.824159 AGAGATTGTTGATGCTATGTATGTAC 57.176 34.615 0.00 0.00 0.00 2.90
551 552 8.424133 AGAGATTGTTGATGCTATGTATGTACA 58.576 33.333 0.00 0.00 40.98 2.90
556 557 9.435688 TTGTTGATGCTATGTATGTACATATCC 57.564 33.333 18.27 7.59 45.19 2.59
557 558 8.040727 TGTTGATGCTATGTATGTACATATCCC 58.959 37.037 18.27 6.90 45.19 3.85
558 559 7.978099 TGATGCTATGTATGTACATATCCCT 57.022 36.000 18.27 6.74 45.19 4.20
559 560 8.011844 TGATGCTATGTATGTACATATCCCTC 57.988 38.462 18.27 6.21 45.19 4.30
560 561 7.619302 TGATGCTATGTATGTACATATCCCTCA 59.381 37.037 18.27 11.44 45.19 3.86
561 562 7.170393 TGCTATGTATGTACATATCCCTCAC 57.830 40.000 18.27 7.23 45.19 3.51
562 563 6.723977 TGCTATGTATGTACATATCCCTCACA 59.276 38.462 18.27 12.51 45.19 3.58
563 564 7.234577 TGCTATGTATGTACATATCCCTCACAA 59.765 37.037 18.27 3.77 45.19 3.33
564 565 7.761704 GCTATGTATGTACATATCCCTCACAAG 59.238 40.741 18.27 12.28 45.19 3.16
565 566 7.855784 ATGTATGTACATATCCCTCACAAGA 57.144 36.000 18.27 0.00 44.54 3.02
566 567 7.669089 TGTATGTACATATCCCTCACAAGAA 57.331 36.000 18.27 0.00 0.00 2.52
567 568 8.084985 TGTATGTACATATCCCTCACAAGAAA 57.915 34.615 18.27 0.00 0.00 2.52
568 569 8.204160 TGTATGTACATATCCCTCACAAGAAAG 58.796 37.037 18.27 0.00 0.00 2.62
569 570 5.989477 TGTACATATCCCTCACAAGAAAGG 58.011 41.667 0.00 0.00 0.00 3.11
570 571 5.724370 TGTACATATCCCTCACAAGAAAGGA 59.276 40.000 0.00 0.00 34.35 3.36
571 572 5.365021 ACATATCCCTCACAAGAAAGGAG 57.635 43.478 0.00 0.00 34.35 3.69
572 573 5.032846 ACATATCCCTCACAAGAAAGGAGA 58.967 41.667 0.00 0.00 34.35 3.71
573 574 5.130145 ACATATCCCTCACAAGAAAGGAGAG 59.870 44.000 0.00 0.00 34.35 3.20
574 575 3.260269 TCCCTCACAAGAAAGGAGAGA 57.740 47.619 0.00 0.00 34.35 3.10
575 576 3.587498 TCCCTCACAAGAAAGGAGAGAA 58.413 45.455 0.00 0.00 34.35 2.87
576 577 3.973973 TCCCTCACAAGAAAGGAGAGAAA 59.026 43.478 0.00 0.00 34.35 2.52
577 578 4.599241 TCCCTCACAAGAAAGGAGAGAAAT 59.401 41.667 0.00 0.00 34.35 2.17
578 579 5.785423 TCCCTCACAAGAAAGGAGAGAAATA 59.215 40.000 0.00 0.00 34.35 1.40
579 580 6.272324 TCCCTCACAAGAAAGGAGAGAAATAA 59.728 38.462 0.00 0.00 34.35 1.40
580 581 6.942576 CCCTCACAAGAAAGGAGAGAAATAAA 59.057 38.462 0.00 0.00 34.35 1.40
581 582 7.613411 CCCTCACAAGAAAGGAGAGAAATAAAT 59.387 37.037 0.00 0.00 34.35 1.40
582 583 9.018582 CCTCACAAGAAAGGAGAGAAATAAATT 57.981 33.333 0.00 0.00 34.35 1.82
583 584 9.837525 CTCACAAGAAAGGAGAGAAATAAATTG 57.162 33.333 0.00 0.00 0.00 2.32
584 585 8.796475 TCACAAGAAAGGAGAGAAATAAATTGG 58.204 33.333 0.00 0.00 0.00 3.16
585 586 7.543520 CACAAGAAAGGAGAGAAATAAATTGGC 59.456 37.037 0.00 0.00 0.00 4.52
586 587 7.233348 ACAAGAAAGGAGAGAAATAAATTGGCA 59.767 33.333 0.00 0.00 0.00 4.92
587 588 7.401955 AGAAAGGAGAGAAATAAATTGGCAG 57.598 36.000 0.00 0.00 0.00 4.85
588 589 7.177878 AGAAAGGAGAGAAATAAATTGGCAGA 58.822 34.615 0.00 0.00 0.00 4.26
589 590 7.338957 AGAAAGGAGAGAAATAAATTGGCAGAG 59.661 37.037 0.00 0.00 0.00 3.35
590 591 5.444176 AGGAGAGAAATAAATTGGCAGAGG 58.556 41.667 0.00 0.00 0.00 3.69
591 592 5.044550 AGGAGAGAAATAAATTGGCAGAGGT 60.045 40.000 0.00 0.00 0.00 3.85
592 593 5.654209 GGAGAGAAATAAATTGGCAGAGGTT 59.346 40.000 0.00 0.00 0.00 3.50
593 594 6.828785 GGAGAGAAATAAATTGGCAGAGGTTA 59.171 38.462 0.00 0.00 0.00 2.85
594 595 7.503902 GGAGAGAAATAAATTGGCAGAGGTTAT 59.496 37.037 0.00 0.00 0.00 1.89
595 596 9.561069 GAGAGAAATAAATTGGCAGAGGTTATA 57.439 33.333 0.00 0.00 0.00 0.98
898 906 0.966370 CCTCCTCGACTCGTTCCCTT 60.966 60.000 0.00 0.00 0.00 3.95
899 907 0.889306 CTCCTCGACTCGTTCCCTTT 59.111 55.000 0.00 0.00 0.00 3.11
904 912 0.318445 CGACTCGTTCCCTTTGTCGT 60.318 55.000 0.00 0.00 43.43 4.34
1077 1098 3.096852 GTTAGGGTTTCAGATTTGGGGG 58.903 50.000 0.00 0.00 0.00 5.40
1118 1139 3.582164 AGGTAGGTTTTGATTTGGCCAA 58.418 40.909 16.05 16.05 0.00 4.52
1126 1147 5.512232 GGTTTTGATTTGGCCAATGTCCTTA 60.512 40.000 21.26 1.89 0.00 2.69
1129 1150 4.352009 TGATTTGGCCAATGTCCTTATGT 58.648 39.130 21.26 0.00 0.00 2.29
1289 1310 0.605050 TTTAGCATGTGCACAGCCGA 60.605 50.000 25.84 15.33 45.16 5.54
1312 1334 7.987458 CCGATATGGATTGTAGGCATAGTTATT 59.013 37.037 0.00 0.00 42.00 1.40
1461 1947 5.117584 TGCTTGCTGTGAACATTTTTGAAT 58.882 33.333 0.00 0.00 0.00 2.57
1507 2264 5.245531 TGAACACTCCTTGATATGAACACC 58.754 41.667 0.00 0.00 0.00 4.16
1508 2265 3.861840 ACACTCCTTGATATGAACACCG 58.138 45.455 0.00 0.00 0.00 4.94
1509 2266 2.609459 CACTCCTTGATATGAACACCGC 59.391 50.000 0.00 0.00 0.00 5.68
1510 2267 2.213499 CTCCTTGATATGAACACCGCC 58.787 52.381 0.00 0.00 0.00 6.13
1511 2268 1.837439 TCCTTGATATGAACACCGCCT 59.163 47.619 0.00 0.00 0.00 5.52
1542 2299 4.623932 ACCAGTTGCAGAGTTCAGATTA 57.376 40.909 0.00 0.00 0.00 1.75
1548 2305 7.185453 CAGTTGCAGAGTTCAGATTAATTAGC 58.815 38.462 0.00 0.00 0.00 3.09
1591 2348 9.897744 TGCTGAAAATACTGAAATTTTAGTCAG 57.102 29.630 17.95 17.67 45.59 3.51
1605 2362 9.646427 AAATTTTAGTCAGTCAGCTAGAGTAAG 57.354 33.333 0.00 0.00 31.15 2.34
2057 2972 4.013267 ACATTACATATCAGCAGGAGGC 57.987 45.455 0.00 0.00 45.30 4.70
2141 3057 3.669251 AGAGACCCAGAAACTTTCTCG 57.331 47.619 0.67 0.00 38.11 4.04
2330 3250 3.567478 AGAGTTGAAGCTTCAGGTTGT 57.433 42.857 27.02 13.52 38.61 3.32
2346 3266 4.154918 CAGGTTGTTGATCTGCTTAAGGAC 59.845 45.833 4.29 0.00 0.00 3.85
2350 3270 4.973168 TGTTGATCTGCTTAAGGACAAGT 58.027 39.130 4.29 0.00 0.00 3.16
2406 3326 4.632538 TCAAAATGCTGAGCTCATGATG 57.367 40.909 18.63 6.60 0.00 3.07
2530 3474 5.097742 TGATGGTTGTGTAATGACCTAGG 57.902 43.478 7.41 7.41 34.52 3.02
2541 3502 6.550108 GTGTAATGACCTAGGATCTAGGAACA 59.450 42.308 23.31 20.58 38.09 3.18
2607 3590 8.358148 GGCTGTGTATGTATGTAGTAGTTATGT 58.642 37.037 0.00 0.00 0.00 2.29
2775 3818 3.855689 ATTTTGTAGTGCCATGTCTGC 57.144 42.857 0.00 0.00 0.00 4.26
2975 4131 4.601019 CAAGAGCAACTAAACCAACAGTG 58.399 43.478 0.00 0.00 0.00 3.66
3036 4192 4.515567 ACAACTTGGCTTAAACTAGAGCAC 59.484 41.667 0.00 0.00 40.63 4.40
3056 4212 4.500205 GCACCTAAACCAACTAAACCAACC 60.500 45.833 0.00 0.00 0.00 3.77
3111 4281 5.048504 ACTTGAGGACAGTACATTGCATTTG 60.049 40.000 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.825109 TCTCATTTTGTATATTTATGTCCGACA 57.175 29.630 3.10 3.10 0.00 4.35
136 137 8.974060 AGGACAACAAAACATTCTAACTAGAA 57.026 30.769 0.00 1.77 45.43 2.10
137 138 9.485206 GTAGGACAACAAAACATTCTAACTAGA 57.515 33.333 0.00 0.00 0.00 2.43
138 139 9.268268 TGTAGGACAACAAAACATTCTAACTAG 57.732 33.333 0.00 0.00 0.00 2.57
139 140 9.616156 TTGTAGGACAACAAAACATTCTAACTA 57.384 29.630 0.00 0.00 36.45 2.24
140 141 8.514330 TTGTAGGACAACAAAACATTCTAACT 57.486 30.769 0.00 0.00 36.45 2.24
141 142 9.233232 CTTTGTAGGACAACAAAACATTCTAAC 57.767 33.333 4.00 0.00 45.88 2.34
142 143 8.962679 ACTTTGTAGGACAACAAAACATTCTAA 58.037 29.630 4.00 0.00 45.88 2.10
143 144 8.514330 ACTTTGTAGGACAACAAAACATTCTA 57.486 30.769 4.00 0.00 45.88 2.10
144 145 7.404671 ACTTTGTAGGACAACAAAACATTCT 57.595 32.000 4.00 0.00 45.88 2.40
145 146 8.474006 AAACTTTGTAGGACAACAAAACATTC 57.526 30.769 4.00 0.00 45.88 2.67
146 147 8.091449 TGAAACTTTGTAGGACAACAAAACATT 58.909 29.630 4.00 0.52 45.88 2.71
147 148 7.607250 TGAAACTTTGTAGGACAACAAAACAT 58.393 30.769 4.00 0.00 45.88 2.71
148 149 6.982852 TGAAACTTTGTAGGACAACAAAACA 58.017 32.000 4.00 0.98 45.88 2.83
149 150 7.597369 ACTTGAAACTTTGTAGGACAACAAAAC 59.403 33.333 4.00 0.00 45.88 2.43
150 151 7.662897 ACTTGAAACTTTGTAGGACAACAAAA 58.337 30.769 4.00 0.00 45.88 2.44
151 152 7.222000 ACTTGAAACTTTGTAGGACAACAAA 57.778 32.000 2.54 2.54 44.81 2.83
152 153 6.827586 ACTTGAAACTTTGTAGGACAACAA 57.172 33.333 0.00 0.00 37.90 2.83
153 154 6.431543 TGAACTTGAAACTTTGTAGGACAACA 59.568 34.615 0.00 0.00 37.90 3.33
154 155 6.848451 TGAACTTGAAACTTTGTAGGACAAC 58.152 36.000 0.00 0.00 37.90 3.32
155 156 7.639113 ATGAACTTGAAACTTTGTAGGACAA 57.361 32.000 0.00 0.00 36.11 3.18
156 157 8.783093 CATATGAACTTGAAACTTTGTAGGACA 58.217 33.333 0.00 0.00 0.00 4.02
157 158 8.784043 ACATATGAACTTGAAACTTTGTAGGAC 58.216 33.333 10.38 0.00 0.00 3.85
158 159 8.918202 ACATATGAACTTGAAACTTTGTAGGA 57.082 30.769 10.38 0.00 0.00 2.94
159 160 9.398170 CAACATATGAACTTGAAACTTTGTAGG 57.602 33.333 10.38 0.00 0.00 3.18
160 161 9.950680 ACAACATATGAACTTGAAACTTTGTAG 57.049 29.630 10.38 0.00 0.00 2.74
162 163 9.301153 GAACAACATATGAACTTGAAACTTTGT 57.699 29.630 10.38 2.06 0.00 2.83
163 164 9.520204 AGAACAACATATGAACTTGAAACTTTG 57.480 29.630 10.38 1.42 0.00 2.77
204 205 9.940166 ATTCGTACGAGTAATTTTTGTCTTTTT 57.060 25.926 18.64 0.00 0.00 1.94
205 206 9.590088 GATTCGTACGAGTAATTTTTGTCTTTT 57.410 29.630 18.64 0.00 0.00 2.27
206 207 7.948363 CGATTCGTACGAGTAATTTTTGTCTTT 59.052 33.333 18.64 0.00 0.00 2.52
207 208 7.442657 CGATTCGTACGAGTAATTTTTGTCTT 58.557 34.615 18.64 0.00 0.00 3.01
208 209 6.453396 GCGATTCGTACGAGTAATTTTTGTCT 60.453 38.462 18.64 0.00 0.00 3.41
209 210 5.665608 GCGATTCGTACGAGTAATTTTTGTC 59.334 40.000 18.64 0.00 0.00 3.18
210 211 5.544621 GCGATTCGTACGAGTAATTTTTGT 58.455 37.500 18.64 0.00 0.00 2.83
211 212 4.654400 CGCGATTCGTACGAGTAATTTTTG 59.346 41.667 18.64 3.72 0.00 2.44
212 213 4.558470 TCGCGATTCGTACGAGTAATTTTT 59.442 37.500 18.64 0.00 39.67 1.94
213 214 4.097714 TCGCGATTCGTACGAGTAATTTT 58.902 39.130 18.64 0.00 39.67 1.82
214 215 3.683989 TCGCGATTCGTACGAGTAATTT 58.316 40.909 18.64 0.65 39.67 1.82
215 216 3.323729 TCGCGATTCGTACGAGTAATT 57.676 42.857 18.64 2.45 39.67 1.40
216 217 3.223953 CATCGCGATTCGTACGAGTAAT 58.776 45.455 21.14 9.42 39.48 1.89
217 218 2.030823 ACATCGCGATTCGTACGAGTAA 59.969 45.455 21.14 4.12 39.48 2.24
218 219 1.594397 ACATCGCGATTCGTACGAGTA 59.406 47.619 21.14 4.94 39.48 2.59
219 220 0.376152 ACATCGCGATTCGTACGAGT 59.624 50.000 21.14 16.14 39.48 4.18
220 221 2.289890 TACATCGCGATTCGTACGAG 57.710 50.000 21.14 8.11 39.48 4.18
221 222 2.735643 TTACATCGCGATTCGTACGA 57.264 45.000 21.14 15.28 40.53 3.43
222 223 3.804262 TTTTACATCGCGATTCGTACG 57.196 42.857 21.14 9.53 39.67 3.67
223 224 5.720239 TCATTTTTACATCGCGATTCGTAC 58.280 37.500 21.14 0.00 39.67 3.67
224 225 5.952698 TCATTTTTACATCGCGATTCGTA 57.047 34.783 21.14 16.61 39.67 3.43
225 226 4.850859 TCATTTTTACATCGCGATTCGT 57.149 36.364 21.14 17.71 39.67 3.85
226 227 5.113975 CCATTCATTTTTACATCGCGATTCG 59.886 40.000 21.14 12.14 40.15 3.34
227 228 5.108254 GCCATTCATTTTTACATCGCGATTC 60.108 40.000 21.14 0.00 0.00 2.52
228 229 4.739716 GCCATTCATTTTTACATCGCGATT 59.260 37.500 21.14 13.43 0.00 3.34
229 230 4.202000 TGCCATTCATTTTTACATCGCGAT 60.202 37.500 17.62 17.62 0.00 4.58
230 231 3.127721 TGCCATTCATTTTTACATCGCGA 59.872 39.130 13.09 13.09 0.00 5.87
231 232 3.433709 TGCCATTCATTTTTACATCGCG 58.566 40.909 0.00 0.00 0.00 5.87
232 233 5.101628 TCTTGCCATTCATTTTTACATCGC 58.898 37.500 0.00 0.00 0.00 4.58
233 234 8.854979 TTATCTTGCCATTCATTTTTACATCG 57.145 30.769 0.00 0.00 0.00 3.84
234 235 9.252962 CCTTATCTTGCCATTCATTTTTACATC 57.747 33.333 0.00 0.00 0.00 3.06
235 236 8.206189 CCCTTATCTTGCCATTCATTTTTACAT 58.794 33.333 0.00 0.00 0.00 2.29
236 237 7.364585 CCCCTTATCTTGCCATTCATTTTTACA 60.365 37.037 0.00 0.00 0.00 2.41
237 238 6.986231 CCCCTTATCTTGCCATTCATTTTTAC 59.014 38.462 0.00 0.00 0.00 2.01
238 239 6.099557 CCCCCTTATCTTGCCATTCATTTTTA 59.900 38.462 0.00 0.00 0.00 1.52
239 240 5.104402 CCCCCTTATCTTGCCATTCATTTTT 60.104 40.000 0.00 0.00 0.00 1.94
240 241 4.409901 CCCCCTTATCTTGCCATTCATTTT 59.590 41.667 0.00 0.00 0.00 1.82
241 242 3.969312 CCCCCTTATCTTGCCATTCATTT 59.031 43.478 0.00 0.00 0.00 2.32
242 243 3.051880 ACCCCCTTATCTTGCCATTCATT 60.052 43.478 0.00 0.00 0.00 2.57
243 244 2.519691 ACCCCCTTATCTTGCCATTCAT 59.480 45.455 0.00 0.00 0.00 2.57
244 245 1.929494 ACCCCCTTATCTTGCCATTCA 59.071 47.619 0.00 0.00 0.00 2.57
245 246 2.310538 CACCCCCTTATCTTGCCATTC 58.689 52.381 0.00 0.00 0.00 2.67
246 247 1.645919 ACACCCCCTTATCTTGCCATT 59.354 47.619 0.00 0.00 0.00 3.16
247 248 1.308877 ACACCCCCTTATCTTGCCAT 58.691 50.000 0.00 0.00 0.00 4.40
248 249 1.843851 CTACACCCCCTTATCTTGCCA 59.156 52.381 0.00 0.00 0.00 4.92
249 250 1.143073 CCTACACCCCCTTATCTTGCC 59.857 57.143 0.00 0.00 0.00 4.52
250 251 2.124411 TCCTACACCCCCTTATCTTGC 58.876 52.381 0.00 0.00 0.00 4.01
251 252 4.781934 CTTTCCTACACCCCCTTATCTTG 58.218 47.826 0.00 0.00 0.00 3.02
252 253 3.202373 GCTTTCCTACACCCCCTTATCTT 59.798 47.826 0.00 0.00 0.00 2.40
253 254 2.778270 GCTTTCCTACACCCCCTTATCT 59.222 50.000 0.00 0.00 0.00 1.98
254 255 2.158652 GGCTTTCCTACACCCCCTTATC 60.159 54.545 0.00 0.00 0.00 1.75
255 256 1.850998 GGCTTTCCTACACCCCCTTAT 59.149 52.381 0.00 0.00 0.00 1.73
256 257 1.203518 AGGCTTTCCTACACCCCCTTA 60.204 52.381 0.00 0.00 42.06 2.69
257 258 0.477795 AGGCTTTCCTACACCCCCTT 60.478 55.000 0.00 0.00 42.06 3.95
258 259 0.420272 TAGGCTTTCCTACACCCCCT 59.580 55.000 0.00 0.00 43.91 4.79
259 260 3.016745 TAGGCTTTCCTACACCCCC 57.983 57.895 0.00 0.00 43.91 5.40
273 274 6.749118 CAGTTAACATTTGAGAAAGCATAGGC 59.251 38.462 8.61 0.00 41.61 3.93
274 275 8.044060 TCAGTTAACATTTGAGAAAGCATAGG 57.956 34.615 8.61 0.00 0.00 2.57
275 276 8.180267 CCTCAGTTAACATTTGAGAAAGCATAG 58.820 37.037 19.62 2.76 40.54 2.23
276 277 7.362056 GCCTCAGTTAACATTTGAGAAAGCATA 60.362 37.037 19.62 0.00 40.54 3.14
277 278 6.571150 GCCTCAGTTAACATTTGAGAAAGCAT 60.571 38.462 19.62 0.00 40.54 3.79
278 279 5.278463 GCCTCAGTTAACATTTGAGAAAGCA 60.278 40.000 19.62 0.00 40.54 3.91
279 280 5.157067 GCCTCAGTTAACATTTGAGAAAGC 58.843 41.667 19.62 13.00 40.54 3.51
280 281 5.385617 CGCCTCAGTTAACATTTGAGAAAG 58.614 41.667 19.62 8.49 40.54 2.62
281 282 4.320202 GCGCCTCAGTTAACATTTGAGAAA 60.320 41.667 19.62 0.00 40.54 2.52
282 283 3.188460 GCGCCTCAGTTAACATTTGAGAA 59.812 43.478 19.62 0.00 40.54 2.87
283 284 2.742053 GCGCCTCAGTTAACATTTGAGA 59.258 45.455 19.62 3.76 40.54 3.27
284 285 2.159517 GGCGCCTCAGTTAACATTTGAG 60.160 50.000 22.15 13.71 38.41 3.02
285 286 1.810151 GGCGCCTCAGTTAACATTTGA 59.190 47.619 22.15 2.16 0.00 2.69
286 287 1.812571 AGGCGCCTCAGTTAACATTTG 59.187 47.619 27.08 0.00 0.00 2.32
287 288 2.084546 GAGGCGCCTCAGTTAACATTT 58.915 47.619 44.10 13.98 42.31 2.32
288 289 1.739067 GAGGCGCCTCAGTTAACATT 58.261 50.000 44.10 14.21 42.31 2.71
289 290 3.460648 GAGGCGCCTCAGTTAACAT 57.539 52.632 44.10 14.80 42.31 2.71
321 322 3.691154 CTGATGAACGTGCGCGCAG 62.691 63.158 37.44 28.68 42.83 5.18
322 323 3.776849 CTGATGAACGTGCGCGCA 61.777 61.111 33.09 33.09 42.83 6.09
324 325 4.833561 CGCTGATGAACGTGCGCG 62.834 66.667 19.78 19.78 41.85 6.86
327 328 1.510623 CTTGCGCTGATGAACGTGC 60.511 57.895 9.73 0.00 37.18 5.34
328 329 1.133253 CCTTGCGCTGATGAACGTG 59.867 57.895 9.73 0.00 0.00 4.49
329 330 2.034879 CCCTTGCGCTGATGAACGT 61.035 57.895 9.73 0.00 0.00 3.99
330 331 2.753966 CCCCTTGCGCTGATGAACG 61.754 63.158 9.73 0.00 0.00 3.95
331 332 0.960364 TTCCCCTTGCGCTGATGAAC 60.960 55.000 9.73 0.00 0.00 3.18
332 333 0.251121 TTTCCCCTTGCGCTGATGAA 60.251 50.000 9.73 2.29 0.00 2.57
333 334 0.034186 ATTTCCCCTTGCGCTGATGA 60.034 50.000 9.73 0.00 0.00 2.92
334 335 0.101759 CATTTCCCCTTGCGCTGATG 59.898 55.000 9.73 0.00 0.00 3.07
335 336 0.323725 ACATTTCCCCTTGCGCTGAT 60.324 50.000 9.73 0.00 0.00 2.90
336 337 0.539438 AACATTTCCCCTTGCGCTGA 60.539 50.000 9.73 0.00 0.00 4.26
337 338 0.109132 GAACATTTCCCCTTGCGCTG 60.109 55.000 9.73 0.76 0.00 5.18
338 339 0.539438 TGAACATTTCCCCTTGCGCT 60.539 50.000 9.73 0.00 0.00 5.92
339 340 0.109132 CTGAACATTTCCCCTTGCGC 60.109 55.000 0.00 0.00 0.00 6.09
340 341 1.200020 GTCTGAACATTTCCCCTTGCG 59.800 52.381 0.00 0.00 0.00 4.85
341 342 2.519013 AGTCTGAACATTTCCCCTTGC 58.481 47.619 0.00 0.00 0.00 4.01
342 343 3.189287 CGAAGTCTGAACATTTCCCCTTG 59.811 47.826 0.00 0.00 0.00 3.61
343 344 3.412386 CGAAGTCTGAACATTTCCCCTT 58.588 45.455 0.00 0.00 0.00 3.95
344 345 2.290323 CCGAAGTCTGAACATTTCCCCT 60.290 50.000 0.00 0.00 0.00 4.79
345 346 2.084546 CCGAAGTCTGAACATTTCCCC 58.915 52.381 0.00 0.00 0.00 4.81
346 347 3.003480 CTCCGAAGTCTGAACATTTCCC 58.997 50.000 0.00 0.00 0.00 3.97
347 348 3.926616 TCTCCGAAGTCTGAACATTTCC 58.073 45.455 0.00 0.00 0.00 3.13
348 349 4.568760 GGATCTCCGAAGTCTGAACATTTC 59.431 45.833 0.00 0.00 0.00 2.17
349 350 4.508662 GGATCTCCGAAGTCTGAACATTT 58.491 43.478 0.00 0.00 0.00 2.32
350 351 4.130286 GGATCTCCGAAGTCTGAACATT 57.870 45.455 0.00 0.00 0.00 2.71
351 352 3.810310 GGATCTCCGAAGTCTGAACAT 57.190 47.619 0.00 0.00 0.00 2.71
364 365 3.665190 ACTGTTTCTTGTTCGGATCTCC 58.335 45.455 0.00 0.00 0.00 3.71
365 366 4.865365 CCTACTGTTTCTTGTTCGGATCTC 59.135 45.833 0.00 0.00 0.00 2.75
366 367 4.322801 CCCTACTGTTTCTTGTTCGGATCT 60.323 45.833 0.00 0.00 0.00 2.75
367 368 3.933332 CCCTACTGTTTCTTGTTCGGATC 59.067 47.826 0.00 0.00 0.00 3.36
368 369 3.307480 CCCCTACTGTTTCTTGTTCGGAT 60.307 47.826 0.00 0.00 0.00 4.18
369 370 2.038033 CCCCTACTGTTTCTTGTTCGGA 59.962 50.000 0.00 0.00 0.00 4.55
370 371 2.423577 CCCCTACTGTTTCTTGTTCGG 58.576 52.381 0.00 0.00 0.00 4.30
371 372 1.804748 GCCCCTACTGTTTCTTGTTCG 59.195 52.381 0.00 0.00 0.00 3.95
372 373 2.858745 TGCCCCTACTGTTTCTTGTTC 58.141 47.619 0.00 0.00 0.00 3.18
373 374 3.117663 TCTTGCCCCTACTGTTTCTTGTT 60.118 43.478 0.00 0.00 0.00 2.83
374 375 2.441750 TCTTGCCCCTACTGTTTCTTGT 59.558 45.455 0.00 0.00 0.00 3.16
375 376 3.077359 CTCTTGCCCCTACTGTTTCTTG 58.923 50.000 0.00 0.00 0.00 3.02
376 377 2.979678 TCTCTTGCCCCTACTGTTTCTT 59.020 45.455 0.00 0.00 0.00 2.52
377 378 2.621070 TCTCTTGCCCCTACTGTTTCT 58.379 47.619 0.00 0.00 0.00 2.52
378 379 3.198853 AGATCTCTTGCCCCTACTGTTTC 59.801 47.826 0.00 0.00 0.00 2.78
379 380 3.185455 AGATCTCTTGCCCCTACTGTTT 58.815 45.455 0.00 0.00 0.00 2.83
380 381 2.839228 AGATCTCTTGCCCCTACTGTT 58.161 47.619 0.00 0.00 0.00 3.16
381 382 2.559381 AGATCTCTTGCCCCTACTGT 57.441 50.000 0.00 0.00 0.00 3.55
382 383 3.192422 CGATAGATCTCTTGCCCCTACTG 59.808 52.174 0.00 0.00 39.76 2.74
383 384 3.074687 TCGATAGATCTCTTGCCCCTACT 59.925 47.826 0.00 0.00 42.67 2.57
384 385 3.422796 TCGATAGATCTCTTGCCCCTAC 58.577 50.000 0.00 0.00 42.67 3.18
385 386 3.808834 TCGATAGATCTCTTGCCCCTA 57.191 47.619 0.00 0.00 42.67 3.53
386 387 2.685106 TCGATAGATCTCTTGCCCCT 57.315 50.000 0.00 0.00 42.67 4.79
399 400 8.909708 TTGCTGGTAATTTTTCATTTCGATAG 57.090 30.769 0.00 0.00 0.00 2.08
400 401 8.519526 ACTTGCTGGTAATTTTTCATTTCGATA 58.480 29.630 0.00 0.00 0.00 2.92
401 402 7.378181 ACTTGCTGGTAATTTTTCATTTCGAT 58.622 30.769 0.00 0.00 0.00 3.59
402 403 6.744112 ACTTGCTGGTAATTTTTCATTTCGA 58.256 32.000 0.00 0.00 0.00 3.71
403 404 7.042791 ACAACTTGCTGGTAATTTTTCATTTCG 60.043 33.333 0.00 0.00 0.00 3.46
404 405 8.063630 CACAACTTGCTGGTAATTTTTCATTTC 58.936 33.333 0.00 0.00 0.00 2.17
405 406 7.918643 CACAACTTGCTGGTAATTTTTCATTT 58.081 30.769 0.00 0.00 0.00 2.32
406 407 7.481275 CACAACTTGCTGGTAATTTTTCATT 57.519 32.000 0.00 0.00 0.00 2.57
422 423 3.366273 GGGTCATACACATGCACAACTTG 60.366 47.826 0.00 0.00 31.73 3.16
423 424 2.819608 GGGTCATACACATGCACAACTT 59.180 45.455 0.00 0.00 31.73 2.66
424 425 2.436417 GGGTCATACACATGCACAACT 58.564 47.619 0.00 0.00 31.73 3.16
425 426 1.130373 CGGGTCATACACATGCACAAC 59.870 52.381 0.00 0.00 31.73 3.32
426 427 1.002544 TCGGGTCATACACATGCACAA 59.997 47.619 0.00 0.00 31.73 3.33
427 428 0.610687 TCGGGTCATACACATGCACA 59.389 50.000 0.00 0.00 31.73 4.57
428 429 1.290203 CTCGGGTCATACACATGCAC 58.710 55.000 0.00 0.00 31.73 4.57
429 430 0.461870 GCTCGGGTCATACACATGCA 60.462 55.000 0.00 0.00 31.73 3.96
430 431 1.160329 GGCTCGGGTCATACACATGC 61.160 60.000 0.00 0.00 31.73 4.06
431 432 0.465705 AGGCTCGGGTCATACACATG 59.534 55.000 0.00 0.00 0.00 3.21
432 433 0.465705 CAGGCTCGGGTCATACACAT 59.534 55.000 0.00 0.00 0.00 3.21
433 434 1.613317 CCAGGCTCGGGTCATACACA 61.613 60.000 0.00 0.00 0.00 3.72
434 435 1.144057 CCAGGCTCGGGTCATACAC 59.856 63.158 0.00 0.00 0.00 2.90
435 436 2.731571 GCCAGGCTCGGGTCATACA 61.732 63.158 3.29 0.00 0.00 2.29
436 437 2.109181 GCCAGGCTCGGGTCATAC 59.891 66.667 3.29 0.00 0.00 2.39
437 438 3.161450 GGCCAGGCTCGGGTCATA 61.161 66.667 12.43 0.00 0.00 2.15
444 445 4.473520 ATCCAACGGCCAGGCTCG 62.474 66.667 12.43 15.68 0.00 5.03
445 446 2.825836 CATCCAACGGCCAGGCTC 60.826 66.667 12.43 0.00 0.00 4.70
446 447 3.329889 TCATCCAACGGCCAGGCT 61.330 61.111 12.43 0.00 0.00 4.58
447 448 3.134127 GTCATCCAACGGCCAGGC 61.134 66.667 1.26 1.26 0.00 4.85
448 449 2.040544 GTGTCATCCAACGGCCAGG 61.041 63.158 2.24 0.60 0.00 4.45
449 450 2.040544 GGTGTCATCCAACGGCCAG 61.041 63.158 2.24 0.00 0.00 4.85
450 451 2.033448 GGTGTCATCCAACGGCCA 59.967 61.111 2.24 0.00 0.00 5.36
455 456 0.729116 CAGATGCGGTGTCATCCAAC 59.271 55.000 0.63 0.00 42.84 3.77
456 457 1.026182 GCAGATGCGGTGTCATCCAA 61.026 55.000 0.63 0.00 42.84 3.53
457 458 1.450134 GCAGATGCGGTGTCATCCA 60.450 57.895 0.63 0.00 42.84 3.41
458 459 2.182842 GGCAGATGCGGTGTCATCC 61.183 63.158 0.00 0.00 42.84 3.51
459 460 1.153289 AGGCAGATGCGGTGTCATC 60.153 57.895 0.00 0.00 43.26 2.92
460 461 1.450848 CAGGCAGATGCGGTGTCAT 60.451 57.895 0.00 0.00 43.26 3.06
461 462 2.046988 CAGGCAGATGCGGTGTCA 60.047 61.111 0.00 0.00 43.26 3.58
462 463 2.046892 ACAGGCAGATGCGGTGTC 60.047 61.111 5.80 0.00 43.26 3.67
463 464 2.359107 CACAGGCAGATGCGGTGT 60.359 61.111 15.85 11.27 43.26 4.16
464 465 3.807538 GCACAGGCAGATGCGGTG 61.808 66.667 18.40 18.40 44.47 4.94
466 467 4.790962 AGGCACAGGCAGATGCGG 62.791 66.667 0.00 0.00 43.02 5.69
467 468 3.506096 CAGGCACAGGCAGATGCG 61.506 66.667 0.00 0.00 43.02 4.73
468 469 2.045634 TCAGGCACAGGCAGATGC 60.046 61.111 0.00 0.00 43.71 3.91
469 470 2.113433 GCTCAGGCACAGGCAGATG 61.113 63.158 0.00 0.00 43.71 2.90
470 471 2.271497 GCTCAGGCACAGGCAGAT 59.729 61.111 0.00 0.00 43.71 2.90
471 472 4.383861 CGCTCAGGCACAGGCAGA 62.384 66.667 0.00 0.00 43.71 4.26
487 488 3.423154 GTTCTTCCACCTGCGGCG 61.423 66.667 0.51 0.51 0.00 6.46
488 489 1.856265 CTTGTTCTTCCACCTGCGGC 61.856 60.000 0.00 0.00 0.00 6.53
489 490 1.856265 GCTTGTTCTTCCACCTGCGG 61.856 60.000 0.00 0.00 0.00 5.69
490 491 1.165907 TGCTTGTTCTTCCACCTGCG 61.166 55.000 0.00 0.00 0.00 5.18
491 492 0.595095 CTGCTTGTTCTTCCACCTGC 59.405 55.000 0.00 0.00 0.00 4.85
492 493 2.260844 TCTGCTTGTTCTTCCACCTG 57.739 50.000 0.00 0.00 0.00 4.00
493 494 2.952310 GTTTCTGCTTGTTCTTCCACCT 59.048 45.455 0.00 0.00 0.00 4.00
494 495 2.687935 TGTTTCTGCTTGTTCTTCCACC 59.312 45.455 0.00 0.00 0.00 4.61
495 496 4.036734 TCATGTTTCTGCTTGTTCTTCCAC 59.963 41.667 0.00 0.00 0.00 4.02
496 497 4.206375 TCATGTTTCTGCTTGTTCTTCCA 58.794 39.130 0.00 0.00 0.00 3.53
497 498 4.320788 CCTCATGTTTCTGCTTGTTCTTCC 60.321 45.833 0.00 0.00 0.00 3.46
498 499 4.320788 CCCTCATGTTTCTGCTTGTTCTTC 60.321 45.833 0.00 0.00 0.00 2.87
499 500 3.571401 CCCTCATGTTTCTGCTTGTTCTT 59.429 43.478 0.00 0.00 0.00 2.52
500 501 3.152341 CCCTCATGTTTCTGCTTGTTCT 58.848 45.455 0.00 0.00 0.00 3.01
501 502 2.229784 CCCCTCATGTTTCTGCTTGTTC 59.770 50.000 0.00 0.00 0.00 3.18
502 503 2.242043 CCCCTCATGTTTCTGCTTGTT 58.758 47.619 0.00 0.00 0.00 2.83
503 504 1.915141 CCCCTCATGTTTCTGCTTGT 58.085 50.000 0.00 0.00 0.00 3.16
504 505 0.529378 GCCCCTCATGTTTCTGCTTG 59.471 55.000 0.00 0.00 0.00 4.01
505 506 0.112995 TGCCCCTCATGTTTCTGCTT 59.887 50.000 0.00 0.00 0.00 3.91
506 507 0.112995 TTGCCCCTCATGTTTCTGCT 59.887 50.000 0.00 0.00 0.00 4.24
507 508 0.529378 CTTGCCCCTCATGTTTCTGC 59.471 55.000 0.00 0.00 0.00 4.26
508 509 2.089980 CTCTTGCCCCTCATGTTTCTG 58.910 52.381 0.00 0.00 0.00 3.02
509 510 1.988107 TCTCTTGCCCCTCATGTTTCT 59.012 47.619 0.00 0.00 0.00 2.52
510 511 2.496899 TCTCTTGCCCCTCATGTTTC 57.503 50.000 0.00 0.00 0.00 2.78
511 512 3.094572 CAATCTCTTGCCCCTCATGTTT 58.905 45.455 0.00 0.00 0.00 2.83
512 513 2.042162 ACAATCTCTTGCCCCTCATGTT 59.958 45.455 0.00 0.00 35.69 2.71
513 514 1.637553 ACAATCTCTTGCCCCTCATGT 59.362 47.619 0.00 0.00 35.69 3.21
514 515 2.426024 CAACAATCTCTTGCCCCTCATG 59.574 50.000 0.00 0.00 35.69 3.07
515 516 2.309755 TCAACAATCTCTTGCCCCTCAT 59.690 45.455 0.00 0.00 35.69 2.90
516 517 1.704628 TCAACAATCTCTTGCCCCTCA 59.295 47.619 0.00 0.00 35.69 3.86
517 518 2.496899 TCAACAATCTCTTGCCCCTC 57.503 50.000 0.00 0.00 35.69 4.30
518 519 2.731572 CATCAACAATCTCTTGCCCCT 58.268 47.619 0.00 0.00 35.69 4.79
519 520 1.135721 GCATCAACAATCTCTTGCCCC 59.864 52.381 0.00 0.00 35.69 5.80
520 521 2.097825 AGCATCAACAATCTCTTGCCC 58.902 47.619 0.00 0.00 35.69 5.36
521 522 4.337555 ACATAGCATCAACAATCTCTTGCC 59.662 41.667 0.00 0.00 35.69 4.52
522 523 5.496133 ACATAGCATCAACAATCTCTTGC 57.504 39.130 0.00 0.00 35.69 4.01
523 524 8.151141 ACATACATAGCATCAACAATCTCTTG 57.849 34.615 0.00 0.00 38.39 3.02
524 525 9.265901 GTACATACATAGCATCAACAATCTCTT 57.734 33.333 0.00 0.00 0.00 2.85
525 526 8.424133 TGTACATACATAGCATCAACAATCTCT 58.576 33.333 0.00 0.00 0.00 3.10
526 527 8.593492 TGTACATACATAGCATCAACAATCTC 57.407 34.615 0.00 0.00 0.00 2.75
542 543 7.669089 TTCTTGTGAGGGATATGTACATACA 57.331 36.000 17.69 9.27 40.98 2.29
543 544 7.657761 CCTTTCTTGTGAGGGATATGTACATAC 59.342 40.741 17.69 11.31 0.00 2.39
544 545 7.567250 TCCTTTCTTGTGAGGGATATGTACATA 59.433 37.037 17.65 17.65 33.73 2.29
545 546 6.386927 TCCTTTCTTGTGAGGGATATGTACAT 59.613 38.462 13.93 13.93 33.73 2.29
546 547 5.724370 TCCTTTCTTGTGAGGGATATGTACA 59.276 40.000 0.00 0.00 33.73 2.90
547 548 6.098409 TCTCCTTTCTTGTGAGGGATATGTAC 59.902 42.308 0.00 0.00 33.73 2.90
548 549 6.202331 TCTCCTTTCTTGTGAGGGATATGTA 58.798 40.000 0.00 0.00 33.73 2.29
549 550 5.032846 TCTCCTTTCTTGTGAGGGATATGT 58.967 41.667 0.00 0.00 33.73 2.29
550 551 5.365025 TCTCTCCTTTCTTGTGAGGGATATG 59.635 44.000 0.00 0.00 30.80 1.78
551 552 5.533112 TCTCTCCTTTCTTGTGAGGGATAT 58.467 41.667 0.00 0.00 30.80 1.63
552 553 4.947883 TCTCTCCTTTCTTGTGAGGGATA 58.052 43.478 0.00 0.00 30.80 2.59
553 554 3.796111 TCTCTCCTTTCTTGTGAGGGAT 58.204 45.455 0.00 0.00 30.80 3.85
554 555 3.260269 TCTCTCCTTTCTTGTGAGGGA 57.740 47.619 0.00 0.00 33.31 4.20
555 556 4.357918 TTTCTCTCCTTTCTTGTGAGGG 57.642 45.455 0.00 0.00 33.73 4.30
556 557 7.986085 TTTATTTCTCTCCTTTCTTGTGAGG 57.014 36.000 0.00 0.00 0.00 3.86
557 558 9.837525 CAATTTATTTCTCTCCTTTCTTGTGAG 57.162 33.333 0.00 0.00 0.00 3.51
558 559 8.796475 CCAATTTATTTCTCTCCTTTCTTGTGA 58.204 33.333 0.00 0.00 0.00 3.58
559 560 7.543520 GCCAATTTATTTCTCTCCTTTCTTGTG 59.456 37.037 0.00 0.00 0.00 3.33
560 561 7.233348 TGCCAATTTATTTCTCTCCTTTCTTGT 59.767 33.333 0.00 0.00 0.00 3.16
561 562 7.605449 TGCCAATTTATTTCTCTCCTTTCTTG 58.395 34.615 0.00 0.00 0.00 3.02
562 563 7.671398 TCTGCCAATTTATTTCTCTCCTTTCTT 59.329 33.333 0.00 0.00 0.00 2.52
563 564 7.177878 TCTGCCAATTTATTTCTCTCCTTTCT 58.822 34.615 0.00 0.00 0.00 2.52
564 565 7.396540 TCTGCCAATTTATTTCTCTCCTTTC 57.603 36.000 0.00 0.00 0.00 2.62
565 566 6.379417 CCTCTGCCAATTTATTTCTCTCCTTT 59.621 38.462 0.00 0.00 0.00 3.11
566 567 5.890419 CCTCTGCCAATTTATTTCTCTCCTT 59.110 40.000 0.00 0.00 0.00 3.36
567 568 5.044550 ACCTCTGCCAATTTATTTCTCTCCT 60.045 40.000 0.00 0.00 0.00 3.69
568 569 5.196695 ACCTCTGCCAATTTATTTCTCTCC 58.803 41.667 0.00 0.00 0.00 3.71
569 570 6.765915 AACCTCTGCCAATTTATTTCTCTC 57.234 37.500 0.00 0.00 0.00 3.20
578 579 8.594550 ACTCGTATATATAACCTCTGCCAATTT 58.405 33.333 0.00 0.00 0.00 1.82
579 580 8.135382 ACTCGTATATATAACCTCTGCCAATT 57.865 34.615 0.00 0.00 0.00 2.32
580 581 7.719871 ACTCGTATATATAACCTCTGCCAAT 57.280 36.000 0.00 0.00 0.00 3.16
581 582 7.534723 AACTCGTATATATAACCTCTGCCAA 57.465 36.000 0.00 0.00 0.00 4.52
582 583 8.640063 TTAACTCGTATATATAACCTCTGCCA 57.360 34.615 0.00 0.00 0.00 4.92
593 594 9.982651 ACTTCTGTGCAATTAACTCGTATATAT 57.017 29.630 0.00 0.00 0.00 0.86
595 596 9.245962 GTACTTCTGTGCAATTAACTCGTATAT 57.754 33.333 0.00 0.00 0.00 0.86
596 597 7.703621 GGTACTTCTGTGCAATTAACTCGTATA 59.296 37.037 0.00 0.00 0.00 1.47
597 598 6.534079 GGTACTTCTGTGCAATTAACTCGTAT 59.466 38.462 0.00 0.00 0.00 3.06
598 599 5.865552 GGTACTTCTGTGCAATTAACTCGTA 59.134 40.000 0.00 0.00 0.00 3.43
648 649 5.965334 CGCAAAAATTAGCAATCGTGATACT 59.035 36.000 0.00 0.00 0.00 2.12
652 653 3.911365 CACGCAAAAATTAGCAATCGTGA 59.089 39.130 5.64 0.00 45.89 4.35
799 802 2.745100 TCGTCCTAGTCAGCGCGT 60.745 61.111 8.43 0.00 0.00 6.01
1077 1098 8.244113 CCTACCTAAATCAACCAAATCAAGAAC 58.756 37.037 0.00 0.00 0.00 3.01
1118 1139 4.081406 TGCAAAAGCTCACATAAGGACAT 58.919 39.130 0.00 0.00 0.00 3.06
1126 1147 1.251251 GGACCTGCAAAAGCTCACAT 58.749 50.000 0.00 0.00 0.00 3.21
1129 1150 0.185901 AAGGGACCTGCAAAAGCTCA 59.814 50.000 0.00 0.00 0.00 4.26
1400 1694 5.887598 AGCAAAATATACTCATGCTTGACCA 59.112 36.000 0.00 0.00 44.43 4.02
1507 2264 1.448540 CTGGTACTCCAAGCAGGCG 60.449 63.158 0.00 0.00 43.81 5.52
1508 2265 0.036875 AACTGGTACTCCAAGCAGGC 59.963 55.000 7.83 0.00 46.77 4.85
1509 2266 1.813513 CAACTGGTACTCCAAGCAGG 58.186 55.000 7.83 0.00 46.77 4.85
1510 2267 3.446472 CTGCAACTGGTACTCCAAGCAG 61.446 54.545 15.78 15.78 46.75 4.24
1511 2268 0.472044 TGCAACTGGTACTCCAAGCA 59.528 50.000 0.00 0.00 43.81 3.91
1542 2299 8.097662 AGCAACTAGTACTCTGAAAAGCTAATT 58.902 33.333 0.00 0.00 0.00 1.40
1548 2305 7.715265 TTTCAGCAACTAGTACTCTGAAAAG 57.285 36.000 27.13 9.55 45.26 2.27
1583 2340 7.336427 GGTACTTACTCTAGCTGACTGACTAAA 59.664 40.741 0.00 0.00 0.00 1.85
1584 2341 6.822676 GGTACTTACTCTAGCTGACTGACTAA 59.177 42.308 0.00 0.00 0.00 2.24
1585 2342 6.070366 TGGTACTTACTCTAGCTGACTGACTA 60.070 42.308 0.00 0.00 0.00 2.59
1587 2344 4.942483 TGGTACTTACTCTAGCTGACTGAC 59.058 45.833 0.00 0.00 0.00 3.51
1588 2345 4.942483 GTGGTACTTACTCTAGCTGACTGA 59.058 45.833 0.00 0.00 0.00 3.41
1589 2346 4.944930 AGTGGTACTTACTCTAGCTGACTG 59.055 45.833 0.00 0.00 0.00 3.51
1590 2347 5.182169 AGTGGTACTTACTCTAGCTGACT 57.818 43.478 0.00 0.00 0.00 3.41
1591 2348 6.347696 TCTAGTGGTACTTACTCTAGCTGAC 58.652 44.000 0.00 0.00 34.35 3.51
1592 2349 6.156602 ACTCTAGTGGTACTTACTCTAGCTGA 59.843 42.308 0.00 0.00 34.35 4.26
1593 2350 6.350906 ACTCTAGTGGTACTTACTCTAGCTG 58.649 44.000 0.00 0.00 34.35 4.24
1594 2351 6.564557 ACTCTAGTGGTACTTACTCTAGCT 57.435 41.667 6.60 0.00 34.35 3.32
1595 2352 7.986889 AGTTACTCTAGTGGTACTTACTCTAGC 59.013 40.741 6.60 0.00 34.35 3.42
1605 2362 8.043710 TGACTAGGTTAGTTACTCTAGTGGTAC 58.956 40.741 14.35 4.13 39.19 3.34
1767 2678 4.650972 ACCACAATTGCTACCTTCCTAA 57.349 40.909 5.05 0.00 0.00 2.69
1768 2679 4.650972 AACCACAATTGCTACCTTCCTA 57.349 40.909 5.05 0.00 0.00 2.94
2112 3028 5.946486 AGTTTCTGGGTCTCTTCATCTTTT 58.054 37.500 0.00 0.00 0.00 2.27
2120 3036 3.244249 CCGAGAAAGTTTCTGGGTCTCTT 60.244 47.826 29.14 3.62 46.81 2.85
2141 3057 3.334583 TGACCAGCAGTTCATACTTCC 57.665 47.619 0.00 0.00 30.26 3.46
2330 3250 7.308589 GCTTTTACTTGTCCTTAAGCAGATCAA 60.309 37.037 0.00 0.00 38.23 2.57
2346 3266 9.552114 CACTTCTCTTGAATATGCTTTTACTTG 57.448 33.333 0.00 0.00 0.00 3.16
2350 3270 6.658816 TGCCACTTCTCTTGAATATGCTTTTA 59.341 34.615 0.00 0.00 0.00 1.52
2406 3326 4.082125 TCTCCTTCAGCTTTTCATTTCCC 58.918 43.478 0.00 0.00 0.00 3.97
2530 3474 6.369065 CAGTACACAACCTTTGTTCCTAGATC 59.631 42.308 0.00 0.00 43.23 2.75
2541 3502 5.130350 ACAAGCATACAGTACACAACCTTT 58.870 37.500 0.00 0.00 0.00 3.11
2935 4091 8.696043 TGCTCTTGCTTAATATGTAATGGATT 57.304 30.769 0.00 0.00 40.48 3.01
3036 4192 5.361571 AGTTGGTTGGTTTAGTTGGTTTAGG 59.638 40.000 0.00 0.00 0.00 2.69
3056 4212 7.898725 CAAGTTGCTCTTGTTTAGTTAGTTG 57.101 36.000 11.95 0.00 45.89 3.16
3196 4372 2.705127 AGGGCCAAATTTCACAATGTGT 59.295 40.909 13.55 0.00 34.79 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.