Multiple sequence alignment - TraesCS5D01G427600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G427600 chr5D 100.000 5255 0 0 1 5255 485765116 485770370 0.000000e+00 9705.0
1 TraesCS5D01G427600 chr5D 85.214 1569 149 53 403 1930 485917569 485919095 0.000000e+00 1535.0
2 TraesCS5D01G427600 chr5D 88.226 1206 87 24 1756 2935 485603996 485605172 0.000000e+00 1389.0
3 TraesCS5D01G427600 chr5D 90.062 966 82 8 1931 2885 485919317 485920279 0.000000e+00 1240.0
4 TraesCS5D01G427600 chr5D 94.244 747 30 5 3691 4426 485605786 485606530 0.000000e+00 1129.0
5 TraesCS5D01G427600 chr5D 93.583 748 30 5 778 1510 485602386 485603130 0.000000e+00 1099.0
6 TraesCS5D01G427600 chr5D 94.118 578 25 6 175 752 485601307 485601875 0.000000e+00 870.0
7 TraesCS5D01G427600 chr5D 87.516 761 68 19 3170 3908 485605206 485605961 0.000000e+00 854.0
8 TraesCS5D01G427600 chr5D 87.929 729 70 9 766 1482 485737965 485738687 0.000000e+00 843.0
9 TraesCS5D01G427600 chr5D 87.206 766 66 18 3170 3908 485928279 485929039 0.000000e+00 843.0
10 TraesCS5D01G427600 chr5D 81.256 1051 107 50 692 1682 485354255 485355275 0.000000e+00 767.0
11 TraesCS5D01G427600 chr5D 81.737 898 94 34 765 1629 485350504 485351364 0.000000e+00 686.0
12 TraesCS5D01G427600 chr5D 83.533 753 75 22 967 1685 485274666 485275403 0.000000e+00 658.0
13 TraesCS5D01G427600 chr5D 81.132 901 92 42 765 1628 485375139 485375998 0.000000e+00 651.0
14 TraesCS5D01G427600 chr5D 90.103 485 32 9 3691 4168 485928864 485929339 2.690000e-172 616.0
15 TraesCS5D01G427600 chr5D 82.843 408 48 14 1281 1677 485611046 485611442 3.900000e-91 346.0
16 TraesCS5D01G427600 chr5D 79.425 452 65 20 3691 4124 486031328 486031769 1.430000e-75 294.0
17 TraesCS5D01G427600 chr5D 95.055 182 8 1 1 181 485396780 485396961 8.610000e-73 285.0
18 TraesCS5D01G427600 chr5D 92.553 188 7 4 1558 1739 485603128 485603314 4.040000e-66 263.0
19 TraesCS5D01G427600 chr5D 86.000 200 27 1 175 374 505350751 505350949 4.120000e-51 213.0
20 TraesCS5D01G427600 chr5D 75.877 456 82 18 3518 3953 486092497 486092944 1.920000e-49 207.0
21 TraesCS5D01G427600 chr5D 83.772 228 24 3 2941 3158 430975215 430975439 2.480000e-48 204.0
22 TraesCS5D01G427600 chr5D 86.207 174 20 4 2986 3158 329771241 329771071 8.990000e-43 185.0
23 TraesCS5D01G427600 chr5D 76.800 375 56 22 3543 3909 486015777 486016128 1.160000e-41 182.0
24 TraesCS5D01G427600 chr5D 85.629 167 18 5 1 162 223234908 223235073 2.520000e-38 171.0
25 TraesCS5D01G427600 chr5D 83.908 174 22 5 1 169 449637472 449637644 1.510000e-35 161.0
26 TraesCS5D01G427600 chr5D 100.000 39 0 0 4631 4669 485608238 485608276 7.300000e-09 73.1
27 TraesCS5D01G427600 chr5A 88.270 1185 76 28 379 1530 606557781 606558935 0.000000e+00 1360.0
28 TraesCS5D01G427600 chr5A 87.630 962 88 18 1986 2938 606560056 606560995 0.000000e+00 1088.0
29 TraesCS5D01G427600 chr5A 87.416 747 52 19 986 1694 606696043 606696785 0.000000e+00 821.0
30 TraesCS5D01G427600 chr5A 86.494 770 69 21 3170 3908 606699706 606700471 0.000000e+00 813.0
31 TraesCS5D01G427600 chr5A 90.865 613 36 11 386 994 606683861 606684457 0.000000e+00 804.0
32 TraesCS5D01G427600 chr5A 82.471 947 98 29 723 1619 606541821 606542749 0.000000e+00 767.0
33 TraesCS5D01G427600 chr5A 89.825 570 50 3 2371 2939 606699102 606699664 0.000000e+00 725.0
34 TraesCS5D01G427600 chr5A 88.309 556 48 7 2387 2939 606768273 606768814 0.000000e+00 651.0
35 TraesCS5D01G427600 chr5A 90.543 497 34 6 3689 4180 606769397 606769885 0.000000e+00 645.0
36 TraesCS5D01G427600 chr5A 82.210 742 86 23 905 1629 606627158 606627870 9.740000e-167 597.0
37 TraesCS5D01G427600 chr5A 89.241 474 34 10 3691 4156 606700296 606700760 1.270000e-160 577.0
38 TraesCS5D01G427600 chr5A 87.755 490 46 9 3697 4180 606579206 606579687 1.280000e-155 560.0
39 TraesCS5D01G427600 chr5A 92.562 363 19 2 3341 3695 606561409 606561771 1.010000e-141 514.0
40 TraesCS5D01G427600 chr5A 84.155 568 50 17 1835 2376 606767601 606768154 1.010000e-141 514.0
41 TraesCS5D01G427600 chr5A 83.519 540 55 20 3399 3908 606769039 606769574 1.710000e-129 473.0
42 TraesCS5D01G427600 chr5A 85.970 335 33 6 1987 2311 606698768 606699098 3.900000e-91 346.0
43 TraesCS5D01G427600 chr5A 88.538 253 29 0 3715 3967 606783654 606783906 1.840000e-79 307.0
44 TraesCS5D01G427600 chr5A 92.553 188 9 3 3161 3347 606768857 606769040 1.120000e-66 265.0
45 TraesCS5D01G427600 chr5A 86.385 213 26 3 1791 2003 606697930 606698139 4.090000e-56 230.0
46 TraesCS5D01G427600 chr5A 80.357 280 39 15 3440 3707 606786779 606787054 1.150000e-46 198.0
47 TraesCS5D01G427600 chr5A 92.424 132 10 0 3211 3342 606561040 606561171 6.950000e-44 189.0
48 TraesCS5D01G427600 chr5A 81.659 229 26 8 2941 3158 624677622 624677399 5.410000e-40 176.0
49 TraesCS5D01G427600 chr5A 84.483 174 19 7 1 169 476722573 476722743 1.170000e-36 165.0
50 TraesCS5D01G427600 chr5A 77.273 220 34 14 2950 3163 652115495 652115704 1.200000e-21 115.0
51 TraesCS5D01G427600 chr5A 84.821 112 9 6 759 869 606531324 606531428 7.200000e-19 106.0
52 TraesCS5D01G427600 chr5B 91.073 941 58 7 771 1685 596972257 596973197 0.000000e+00 1249.0
53 TraesCS5D01G427600 chr5B 91.040 625 54 2 2315 2939 596981373 596981995 0.000000e+00 843.0
54 TraesCS5D01G427600 chr5B 86.483 762 73 23 3170 3908 596982045 596982799 0.000000e+00 809.0
55 TraesCS5D01G427600 chr5B 81.937 919 104 28 759 1629 596908579 596909483 0.000000e+00 721.0
56 TraesCS5D01G427600 chr5B 89.899 495 36 9 3691 4180 596982624 596983109 4.470000e-175 625.0
57 TraesCS5D01G427600 chr5B 88.642 405 36 5 1926 2320 596979811 596980215 7.910000e-133 484.0
58 TraesCS5D01G427600 chr5B 86.957 207 20 5 168 374 635355668 635355867 5.300000e-55 226.0
59 TraesCS5D01G427600 chr5B 84.466 206 31 1 168 373 423925015 423925219 8.920000e-48 202.0
60 TraesCS5D01G427600 chr5B 85.475 179 21 4 3543 3718 597080211 597080387 1.160000e-41 182.0
61 TraesCS5D01G427600 chr5B 77.477 222 29 13 2941 3158 626422354 626422150 4.300000e-21 113.0
62 TraesCS5D01G427600 chr5B 81.081 111 19 2 3844 3953 597102595 597102704 2.610000e-13 87.9
63 TraesCS5D01G427600 chr5B 83.099 71 9 2 3838 3908 597091494 597091561 1.580000e-05 62.1
64 TraesCS5D01G427600 chr5B 97.059 34 1 0 3390 3423 597091063 597091096 2.040000e-04 58.4
65 TraesCS5D01G427600 chr7D 98.596 570 8 0 4686 5255 613376558 613377127 0.000000e+00 1009.0
66 TraesCS5D01G427600 chr7D 98.421 570 9 0 4686 5255 7723858 7724427 0.000000e+00 1003.0
67 TraesCS5D01G427600 chr7D 97.274 587 14 2 4670 5255 314643423 314644008 0.000000e+00 994.0
68 TraesCS5D01G427600 chr7D 84.906 212 24 7 168 374 295423080 295422872 1.920000e-49 207.0
69 TraesCS5D01G427600 chr7D 84.483 174 21 5 1 169 106375673 106375501 3.260000e-37 167.0
70 TraesCS5D01G427600 chr6D 98.596 570 8 0 4686 5255 291373910 291374479 0.000000e+00 1009.0
71 TraesCS5D01G427600 chr6D 98.594 569 8 0 4687 5255 11163420 11162852 0.000000e+00 1007.0
72 TraesCS5D01G427600 chr6D 84.000 175 20 8 1 169 13180477 13180649 1.510000e-35 161.0
73 TraesCS5D01G427600 chr6D 89.041 73 6 2 4588 4659 457478041 457477970 7.250000e-14 89.8
74 TraesCS5D01G427600 chr6D 97.872 47 0 1 2941 2987 406166715 406166760 4.360000e-11 80.5
75 TraesCS5D01G427600 chr2D 98.427 572 9 0 4684 5255 487266466 487267037 0.000000e+00 1007.0
76 TraesCS5D01G427600 chr3D 98.594 569 7 1 4687 5255 459098651 459099218 0.000000e+00 1005.0
77 TraesCS5D01G427600 chr4D 98.421 570 9 0 4686 5255 223441699 223442268 0.000000e+00 1003.0
78 TraesCS5D01G427600 chr4D 85.088 228 19 7 2941 3157 82144918 82144695 8.860000e-53 219.0
79 TraesCS5D01G427600 chr4D 88.415 164 15 3 2999 3161 9254269 9254109 1.490000e-45 195.0
80 TraesCS5D01G427600 chr1D 98.421 570 9 0 4686 5255 9661452 9660883 0.000000e+00 1003.0
81 TraesCS5D01G427600 chr1D 84.434 212 20 4 2957 3158 398474027 398474235 4.150000e-46 196.0
82 TraesCS5D01G427600 chr4A 87.065 201 24 2 175 374 484371394 484371593 5.300000e-55 226.0
83 TraesCS5D01G427600 chr3A 85.153 229 20 4 2941 3158 530441834 530441609 6.850000e-54 222.0
84 TraesCS5D01G427600 chr3A 82.819 227 26 3 2942 3158 51010259 51010482 1.930000e-44 191.0
85 TraesCS5D01G427600 chr3A 86.391 169 20 2 3 169 432865997 432865830 1.160000e-41 182.0
86 TraesCS5D01G427600 chr3A 83.140 172 17 3 2941 3103 608684315 608684483 4.240000e-31 147.0
87 TraesCS5D01G427600 chr2A 84.681 235 23 7 2941 3165 764857793 764858024 6.850000e-54 222.0
88 TraesCS5D01G427600 chr2A 84.889 225 23 4 2942 3158 638786176 638786397 3.190000e-52 217.0
89 TraesCS5D01G427600 chr2A 82.819 227 25 4 2941 3156 691758473 691758250 1.930000e-44 191.0
90 TraesCS5D01G427600 chr6A 84.541 207 31 1 168 374 327429090 327429295 2.480000e-48 204.0
91 TraesCS5D01G427600 chr1B 84.541 207 31 1 168 374 684811973 684812178 2.480000e-48 204.0
92 TraesCS5D01G427600 chr1B 86.466 133 9 3 2941 3064 44235138 44235270 2.550000e-28 137.0
93 TraesCS5D01G427600 chr6B 84.541 207 29 3 169 374 469851654 469851450 8.920000e-48 202.0
94 TraesCS5D01G427600 chr1A 84.884 172 23 2 1 169 372523214 372523043 2.520000e-38 171.0
95 TraesCS5D01G427600 chr2B 84.706 170 21 4 3 169 91601323 91601156 1.170000e-36 165.0
96 TraesCS5D01G427600 chr4B 78.161 174 23 3 2941 3102 191237111 191236941 4.330000e-16 97.1
97 TraesCS5D01G427600 chr4B 80.833 120 14 4 2941 3051 142517606 142517487 9.380000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G427600 chr5D 485765116 485770370 5254 False 9705.000000 9705 100.000000 1 5255 1 chr5D.!!$F8 5254
1 TraesCS5D01G427600 chr5D 485917569 485920279 2710 False 1387.500000 1535 87.638000 403 2885 2 chr5D.!!$F15 2482
2 TraesCS5D01G427600 chr5D 485737965 485738687 722 False 843.000000 843 87.929000 766 1482 1 chr5D.!!$F7 716
3 TraesCS5D01G427600 chr5D 485601307 485611442 10135 False 752.887500 1389 91.635375 175 4669 8 chr5D.!!$F14 4494
4 TraesCS5D01G427600 chr5D 485928279 485929339 1060 False 729.500000 843 88.654500 3170 4168 2 chr5D.!!$F16 998
5 TraesCS5D01G427600 chr5D 485350504 485355275 4771 False 726.500000 767 81.496500 692 1682 2 chr5D.!!$F13 990
6 TraesCS5D01G427600 chr5D 485274666 485275403 737 False 658.000000 658 83.533000 967 1685 1 chr5D.!!$F4 718
7 TraesCS5D01G427600 chr5D 485375139 485375998 859 False 651.000000 651 81.132000 765 1628 1 chr5D.!!$F5 863
8 TraesCS5D01G427600 chr5A 606683861 606684457 596 False 804.000000 804 90.865000 386 994 1 chr5A.!!$F6 608
9 TraesCS5D01G427600 chr5A 606557781 606561771 3990 False 787.750000 1360 90.221500 379 3695 4 chr5A.!!$F8 3316
10 TraesCS5D01G427600 chr5A 606541821 606542749 928 False 767.000000 767 82.471000 723 1619 1 chr5A.!!$F3 896
11 TraesCS5D01G427600 chr5A 606627158 606627870 712 False 597.000000 597 82.210000 905 1629 1 chr5A.!!$F5 724
12 TraesCS5D01G427600 chr5A 606696043 606700760 4717 False 585.333333 821 87.555167 986 4156 6 chr5A.!!$F9 3170
13 TraesCS5D01G427600 chr5A 606767601 606769885 2284 False 509.600000 651 87.815800 1835 4180 5 chr5A.!!$F10 2345
14 TraesCS5D01G427600 chr5A 606783654 606787054 3400 False 252.500000 307 84.447500 3440 3967 2 chr5A.!!$F11 527
15 TraesCS5D01G427600 chr5B 596972257 596973197 940 False 1249.000000 1249 91.073000 771 1685 1 chr5B.!!$F3 914
16 TraesCS5D01G427600 chr5B 596908579 596909483 904 False 721.000000 721 81.937000 759 1629 1 chr5B.!!$F2 870
17 TraesCS5D01G427600 chr5B 596979811 596983109 3298 False 690.250000 843 89.016000 1926 4180 4 chr5B.!!$F7 2254
18 TraesCS5D01G427600 chr7D 613376558 613377127 569 False 1009.000000 1009 98.596000 4686 5255 1 chr7D.!!$F3 569
19 TraesCS5D01G427600 chr7D 7723858 7724427 569 False 1003.000000 1003 98.421000 4686 5255 1 chr7D.!!$F1 569
20 TraesCS5D01G427600 chr7D 314643423 314644008 585 False 994.000000 994 97.274000 4670 5255 1 chr7D.!!$F2 585
21 TraesCS5D01G427600 chr6D 291373910 291374479 569 False 1009.000000 1009 98.596000 4686 5255 1 chr6D.!!$F2 569
22 TraesCS5D01G427600 chr6D 11162852 11163420 568 True 1007.000000 1007 98.594000 4687 5255 1 chr6D.!!$R1 568
23 TraesCS5D01G427600 chr2D 487266466 487267037 571 False 1007.000000 1007 98.427000 4684 5255 1 chr2D.!!$F1 571
24 TraesCS5D01G427600 chr3D 459098651 459099218 567 False 1005.000000 1005 98.594000 4687 5255 1 chr3D.!!$F1 568
25 TraesCS5D01G427600 chr4D 223441699 223442268 569 False 1003.000000 1003 98.421000 4686 5255 1 chr4D.!!$F1 569
26 TraesCS5D01G427600 chr1D 9660883 9661452 569 True 1003.000000 1003 98.421000 4686 5255 1 chr1D.!!$R1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 0.106708 GATCGTGGCCCAGCTATCAA 59.893 55.0 0.00 0.00 0.00 2.57 F
561 566 0.106918 TGCCTCACGTTTTGGGAAGT 60.107 50.0 0.00 0.00 0.00 3.01 F
1019 4618 0.668706 TCGCAGCAGAGCAGAAGAAC 60.669 55.0 0.00 0.00 0.00 3.01 F
2939 11348 0.399091 TTCACATTGGGGTGGGCAAA 60.399 50.0 0.00 0.00 39.27 3.68 F
2974 11383 0.030638 GCATCTCCGAGAGACTGAGC 59.969 60.0 4.07 5.25 41.76 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2012 9076 0.588252 CTTTACGCTTGTGCTGTGCT 59.412 50.0 0.00 0.00 36.97 4.40 R
2149 9230 0.318107 GTTCGGACCGTCAAGTTCGA 60.318 55.0 14.79 0.00 45.87 3.71 R
2955 11364 0.030638 GCTCAGTCTCTCGGAGATGC 59.969 60.0 8.39 4.64 40.98 3.91 R
3796 12523 0.036388 CATGGTCACCTTAGGCACGT 60.036 55.0 0.00 0.00 0.00 4.49 R
4502 13261 1.372501 AAGTGGGCTACCTCACCATT 58.627 50.0 0.00 0.00 36.54 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.047655 TTCGTGGCGGCTAGGTTG 60.048 61.111 11.43 0.00 0.00 3.77
18 19 3.599285 TTCGTGGCGGCTAGGTTGG 62.599 63.158 11.43 0.00 0.00 3.77
39 40 4.864916 GCCAACGCCTCACATATATATG 57.135 45.455 19.21 19.21 39.55 1.78
51 52 4.820897 ACATATATATGTGCGTCCAGGTG 58.179 43.478 24.39 0.00 44.66 4.00
52 53 2.839486 ATATATGTGCGTCCAGGTGG 57.161 50.000 0.00 0.00 0.00 4.61
53 54 1.783071 TATATGTGCGTCCAGGTGGA 58.217 50.000 0.00 0.00 43.08 4.02
54 55 0.465705 ATATGTGCGTCCAGGTGGAG 59.534 55.000 0.00 0.00 46.49 3.86
56 57 1.892819 ATGTGCGTCCAGGTGGAGAG 61.893 60.000 0.00 0.00 46.49 3.20
58 59 2.276116 TGCGTCCAGGTGGAGAGAC 61.276 63.158 0.00 0.00 46.49 3.36
59 60 2.878429 CGTCCAGGTGGAGAGACG 59.122 66.667 0.00 0.00 46.49 4.18
60 61 1.972223 CGTCCAGGTGGAGAGACGT 60.972 63.158 0.00 0.00 46.49 4.34
62 63 0.894184 GTCCAGGTGGAGAGACGTGA 60.894 60.000 0.00 0.00 46.49 4.35
63 64 0.609406 TCCAGGTGGAGAGACGTGAG 60.609 60.000 0.00 0.00 39.78 3.51
65 66 1.075836 AGGTGGAGAGACGTGAGCT 59.924 57.895 0.00 0.00 0.00 4.09
66 67 0.540830 AGGTGGAGAGACGTGAGCTT 60.541 55.000 0.00 0.00 0.00 3.74
67 68 0.389166 GGTGGAGAGACGTGAGCTTG 60.389 60.000 0.00 0.00 0.00 4.01
68 69 0.598562 GTGGAGAGACGTGAGCTTGA 59.401 55.000 0.00 0.00 0.00 3.02
70 71 0.109039 GGAGAGACGTGAGCTTGACC 60.109 60.000 0.00 0.00 0.00 4.02
71 72 0.109039 GAGAGACGTGAGCTTGACCC 60.109 60.000 0.00 0.00 0.00 4.46
72 73 0.827925 AGAGACGTGAGCTTGACCCA 60.828 55.000 0.00 0.00 0.00 4.51
73 74 0.667792 GAGACGTGAGCTTGACCCAC 60.668 60.000 0.00 0.00 0.00 4.61
75 76 2.029073 CGTGAGCTTGACCCACGT 59.971 61.111 14.74 0.00 45.79 4.49
76 77 2.022129 CGTGAGCTTGACCCACGTC 61.022 63.158 14.74 0.00 45.79 4.34
77 78 1.668151 GTGAGCTTGACCCACGTCC 60.668 63.158 0.00 0.00 38.32 4.79
78 79 2.432628 GAGCTTGACCCACGTCCG 60.433 66.667 0.00 0.00 38.32 4.79
80 81 2.432628 GCTTGACCCACGTCCGAG 60.433 66.667 0.00 0.00 38.32 4.63
81 82 3.048602 CTTGACCCACGTCCGAGT 58.951 61.111 0.00 0.00 38.32 4.18
83 84 2.488087 CTTGACCCACGTCCGAGTCC 62.488 65.000 0.00 0.00 38.32 3.85
85 86 4.962836 ACCCACGTCCGAGTCCGT 62.963 66.667 0.00 0.00 37.90 4.69
89 90 2.592574 ACGTCCGAGTCCGTGACA 60.593 61.111 6.78 0.00 36.47 3.58
90 91 2.188829 ACGTCCGAGTCCGTGACAA 61.189 57.895 6.78 0.00 36.47 3.18
91 92 1.728426 CGTCCGAGTCCGTGACAAC 60.728 63.158 6.78 0.85 36.47 3.32
92 93 1.372623 GTCCGAGTCCGTGACAACC 60.373 63.158 6.78 0.00 36.59 3.77
93 94 2.048503 CCGAGTCCGTGACAACCC 60.049 66.667 6.78 0.00 34.60 4.11
94 95 2.732016 CGAGTCCGTGACAACCCA 59.268 61.111 6.78 0.00 34.60 4.51
95 96 1.663702 CGAGTCCGTGACAACCCAC 60.664 63.158 6.78 0.00 34.60 4.61
102 103 3.204505 GTGACAACCCACGATTCGA 57.795 52.632 13.95 0.00 0.00 3.71
103 104 0.788391 GTGACAACCCACGATTCGAC 59.212 55.000 13.95 0.00 0.00 4.20
104 105 0.665068 TGACAACCCACGATTCGACG 60.665 55.000 13.95 3.22 39.31 5.12
106 107 0.665369 ACAACCCACGATTCGACGTC 60.665 55.000 13.95 5.18 44.76 4.34
107 108 0.388134 CAACCCACGATTCGACGTCT 60.388 55.000 13.95 0.00 44.76 4.18
108 109 0.109412 AACCCACGATTCGACGTCTC 60.109 55.000 13.95 3.49 44.76 3.36
109 110 1.239296 ACCCACGATTCGACGTCTCA 61.239 55.000 13.95 0.00 44.76 3.27
110 111 0.523546 CCCACGATTCGACGTCTCAG 60.524 60.000 13.95 0.00 44.76 3.35
111 112 0.446616 CCACGATTCGACGTCTCAGA 59.553 55.000 13.95 0.20 44.76 3.27
112 113 1.064208 CCACGATTCGACGTCTCAGAT 59.936 52.381 13.95 1.87 44.76 2.90
113 114 2.367772 CACGATTCGACGTCTCAGATC 58.632 52.381 13.95 9.97 44.76 2.75
114 115 1.004821 ACGATTCGACGTCTCAGATCG 60.005 52.381 24.62 24.62 43.02 3.69
115 116 1.004821 CGATTCGACGTCTCAGATCGT 60.005 52.381 21.12 2.46 43.00 3.73
116 117 2.367772 GATTCGACGTCTCAGATCGTG 58.632 52.381 14.70 0.00 40.39 4.35
117 118 0.446616 TTCGACGTCTCAGATCGTGG 59.553 55.000 14.70 6.32 40.39 4.94
118 119 1.583967 CGACGTCTCAGATCGTGGC 60.584 63.158 14.70 0.00 40.39 5.01
119 120 1.226717 GACGTCTCAGATCGTGGCC 60.227 63.158 8.70 0.00 40.39 5.36
122 123 1.142748 GTCTCAGATCGTGGCCCAG 59.857 63.158 0.00 0.00 0.00 4.45
123 124 2.202987 CTCAGATCGTGGCCCAGC 60.203 66.667 0.00 0.00 0.00 4.85
124 125 2.685017 TCAGATCGTGGCCCAGCT 60.685 61.111 0.00 0.00 0.00 4.24
125 126 1.381191 TCAGATCGTGGCCCAGCTA 60.381 57.895 0.00 0.00 0.00 3.32
126 127 0.760567 TCAGATCGTGGCCCAGCTAT 60.761 55.000 0.00 0.00 0.00 2.97
128 129 0.760567 AGATCGTGGCCCAGCTATCA 60.761 55.000 0.00 0.00 0.00 2.15
129 130 0.106708 GATCGTGGCCCAGCTATCAA 59.893 55.000 0.00 0.00 0.00 2.57
130 131 0.546122 ATCGTGGCCCAGCTATCAAA 59.454 50.000 0.00 0.00 0.00 2.69
131 132 0.107703 TCGTGGCCCAGCTATCAAAG 60.108 55.000 0.00 0.00 0.00 2.77
132 133 0.107703 CGTGGCCCAGCTATCAAAGA 60.108 55.000 0.00 0.00 0.00 2.52
133 134 1.383523 GTGGCCCAGCTATCAAAGAC 58.616 55.000 0.00 0.00 0.00 3.01
134 135 0.255890 TGGCCCAGCTATCAAAGACC 59.744 55.000 0.00 0.00 0.00 3.85
135 136 0.466372 GGCCCAGCTATCAAAGACCC 60.466 60.000 0.00 0.00 0.00 4.46
137 138 1.475930 GCCCAGCTATCAAAGACCCTC 60.476 57.143 0.00 0.00 0.00 4.30
138 139 1.141858 CCCAGCTATCAAAGACCCTCC 59.858 57.143 0.00 0.00 0.00 4.30
139 140 1.839994 CCAGCTATCAAAGACCCTCCA 59.160 52.381 0.00 0.00 0.00 3.86
140 141 2.441001 CCAGCTATCAAAGACCCTCCAT 59.559 50.000 0.00 0.00 0.00 3.41
143 144 4.578105 CAGCTATCAAAGACCCTCCATTTC 59.422 45.833 0.00 0.00 0.00 2.17
144 145 4.476479 AGCTATCAAAGACCCTCCATTTCT 59.524 41.667 0.00 0.00 0.00 2.52
145 146 4.578105 GCTATCAAAGACCCTCCATTTCTG 59.422 45.833 0.00 0.00 0.00 3.02
146 147 4.934797 ATCAAAGACCCTCCATTTCTGA 57.065 40.909 0.00 0.00 0.00 3.27
147 148 4.021102 TCAAAGACCCTCCATTTCTGAC 57.979 45.455 0.00 0.00 0.00 3.51
150 151 0.107654 GACCCTCCATTTCTGACCGG 60.108 60.000 0.00 0.00 0.00 5.28
151 152 1.452108 CCCTCCATTTCTGACCGGC 60.452 63.158 0.00 0.00 0.00 6.13
152 153 1.299648 CCTCCATTTCTGACCGGCA 59.700 57.895 0.00 0.00 0.00 5.69
153 154 0.322456 CCTCCATTTCTGACCGGCAA 60.322 55.000 0.00 0.00 0.00 4.52
154 155 1.533625 CTCCATTTCTGACCGGCAAA 58.466 50.000 0.00 0.00 0.00 3.68
156 157 2.295909 CTCCATTTCTGACCGGCAAAAA 59.704 45.455 0.00 0.00 0.00 1.94
157 158 2.896685 TCCATTTCTGACCGGCAAAAAT 59.103 40.909 0.00 2.67 0.00 1.82
158 159 4.082845 TCCATTTCTGACCGGCAAAAATA 58.917 39.130 0.00 0.00 0.00 1.40
159 160 4.524714 TCCATTTCTGACCGGCAAAAATAA 59.475 37.500 0.00 0.00 0.00 1.40
160 161 4.864247 CCATTTCTGACCGGCAAAAATAAG 59.136 41.667 0.00 0.00 0.00 1.73
161 162 3.569250 TTCTGACCGGCAAAAATAAGC 57.431 42.857 0.00 0.00 0.00 3.09
162 163 1.466950 TCTGACCGGCAAAAATAAGCG 59.533 47.619 0.00 0.00 0.00 4.68
164 165 0.109504 GACCGGCAAAAATAAGCGCA 60.110 50.000 11.47 0.00 0.00 6.09
166 167 1.746220 ACCGGCAAAAATAAGCGCATA 59.254 42.857 11.47 0.97 0.00 3.14
167 168 2.223479 ACCGGCAAAAATAAGCGCATAG 60.223 45.455 11.47 0.00 0.00 2.23
168 169 2.384382 CGGCAAAAATAAGCGCATAGG 58.616 47.619 11.47 0.00 0.00 2.57
169 170 2.127251 GGCAAAAATAAGCGCATAGGC 58.873 47.619 11.47 0.00 0.00 3.93
216 217 9.206870 CCTATTCTCTTCTCAATCTTCAATAGC 57.793 37.037 0.00 0.00 0.00 2.97
235 236 1.066152 GCATGCGGAAGAAAATCCCTC 59.934 52.381 0.00 0.00 36.00 4.30
258 259 3.388345 AACGAGGTCCAACTTCTTCTC 57.612 47.619 0.00 0.00 0.00 2.87
266 267 2.231478 TCCAACTTCTTCTCCACTAGCG 59.769 50.000 0.00 0.00 0.00 4.26
287 288 3.307480 CGGGTTGAGACTAAACTTCCCAT 60.307 47.826 2.62 0.00 33.92 4.00
293 294 5.032846 TGAGACTAAACTTCCCATCATCCT 58.967 41.667 0.00 0.00 0.00 3.24
303 304 6.895782 ACTTCCCATCATCCTTTATTACGAA 58.104 36.000 0.00 0.00 0.00 3.85
305 306 7.282450 ACTTCCCATCATCCTTTATTACGAAAC 59.718 37.037 0.00 0.00 0.00 2.78
318 319 5.541953 ATTACGAAACCCTACATAGACCC 57.458 43.478 0.00 0.00 0.00 4.46
561 566 0.106918 TGCCTCACGTTTTGGGAAGT 60.107 50.000 0.00 0.00 0.00 3.01
571 579 7.965045 TCACGTTTTGGGAAGTTAAAATTTTG 58.035 30.769 13.76 0.00 0.00 2.44
637 645 1.268386 GCAGCAGCTACGTACGATACA 60.268 52.381 24.41 2.89 37.91 2.29
638 646 2.373269 CAGCAGCTACGTACGATACAC 58.627 52.381 24.41 6.56 0.00 2.90
640 648 1.004610 GCAGCTACGTACGATACACGA 60.005 52.381 24.41 0.00 45.77 4.35
641 649 2.349249 GCAGCTACGTACGATACACGAT 60.349 50.000 24.41 0.00 45.77 3.73
642 650 3.120889 GCAGCTACGTACGATACACGATA 60.121 47.826 24.41 0.00 45.77 2.92
643 651 4.381136 CAGCTACGTACGATACACGATAC 58.619 47.826 24.41 0.00 45.77 2.24
690 698 1.500474 TGCTCCCCTACCATGAAGAG 58.500 55.000 0.00 0.00 0.00 2.85
861 4417 7.878127 TCTTCTCACCTAAATACAGAAACTTGG 59.122 37.037 0.00 0.00 0.00 3.61
921 4518 3.064271 ACAACGCACGTACAAACATTCTT 59.936 39.130 0.00 0.00 0.00 2.52
1019 4618 0.668706 TCGCAGCAGAGCAGAAGAAC 60.669 55.000 0.00 0.00 0.00 3.01
1272 4959 2.606587 GGTCACCCTGATGCCACCT 61.607 63.158 0.00 0.00 0.00 4.00
1610 5329 4.264614 GGTCACGACACATATGTTCTTACG 59.735 45.833 5.37 9.88 39.95 3.18
1750 5476 8.820933 CAGTGTCTATATGTAATTGTTCACCAG 58.179 37.037 0.00 0.00 0.00 4.00
1803 7264 7.725251 TGATTTTTGTCAGCCTTTTCACTTAT 58.275 30.769 0.00 0.00 0.00 1.73
1804 7265 8.855110 TGATTTTTGTCAGCCTTTTCACTTATA 58.145 29.630 0.00 0.00 0.00 0.98
1869 7330 4.067972 TGAGTAACCAAAGCTTCGTCTT 57.932 40.909 0.00 0.00 0.00 3.01
1880 7341 1.970447 CTTCGTCTTGTCTCCTCACG 58.030 55.000 0.00 0.00 0.00 4.35
1893 7354 3.068590 TCTCCTCACGTAAACTTCCGTTT 59.931 43.478 0.00 0.00 44.95 3.60
1998 9062 6.399639 TGTTAGTGTCACTGACTGATGTTA 57.600 37.500 23.75 4.11 35.92 2.41
2010 9074 7.763071 CACTGACTGATGTTAAGATCTTGATGA 59.237 37.037 18.47 1.53 0.00 2.92
2012 9076 9.159364 CTGACTGATGTTAAGATCTTGATGAAA 57.841 33.333 18.47 0.66 0.00 2.69
2149 9230 4.030216 CCCCTAATTTGCCCTTACATGTT 58.970 43.478 2.30 0.00 0.00 2.71
2196 9285 6.600882 TTATACCTCCAACGATATCCCTTC 57.399 41.667 0.00 0.00 0.00 3.46
2201 9290 4.384208 CCTCCAACGATATCCCTTCTTTGT 60.384 45.833 0.00 0.00 0.00 2.83
2208 9297 1.064825 ATCCCTTCTTTGTCCGTGGT 58.935 50.000 0.00 0.00 0.00 4.16
2215 9304 3.116079 TCTTTGTCCGTGGTCTTAACC 57.884 47.619 0.00 0.00 46.66 2.85
2242 9331 7.621683 GGATGTCTGAAATCCCCTAGTATATCT 59.378 40.741 14.94 0.00 38.13 1.98
2250 9339 7.425224 AATCCCCTAGTATATCTCCAAATCG 57.575 40.000 0.00 0.00 0.00 3.34
2257 9348 5.408824 AGTATATCTCCAAATCGGGGGTTA 58.591 41.667 0.00 0.00 35.01 2.85
2311 9406 6.818644 CACCGCCAACTTAGCATATATAAGAT 59.181 38.462 11.83 0.69 34.86 2.40
2341 10600 6.222389 CAAGGCCATCACAAACTCATTTTTA 58.778 36.000 5.01 0.00 0.00 1.52
2342 10601 6.610075 AGGCCATCACAAACTCATTTTTAT 57.390 33.333 5.01 0.00 0.00 1.40
2343 10602 7.008021 AGGCCATCACAAACTCATTTTTATT 57.992 32.000 5.01 0.00 0.00 1.40
2409 10799 7.012421 GTGAATAATTGAGGGATAGTGTTGGAC 59.988 40.741 0.00 0.00 0.00 4.02
2445 10837 0.880441 CATCATGGCGGTGTGTTTCA 59.120 50.000 0.00 0.00 0.00 2.69
2457 10849 1.076412 TGTTTCACCTTGCCTGCCA 60.076 52.632 0.00 0.00 0.00 4.92
2649 11043 4.929808 AGTAGTTGAACGGATGAACATGAC 59.070 41.667 0.00 0.00 0.00 3.06
2653 11047 1.927174 GAACGGATGAACATGACGGAG 59.073 52.381 0.00 0.00 0.00 4.63
2701 11095 6.036470 TGTCATGAAATCGTCATCTCTACAC 58.964 40.000 0.00 0.00 44.01 2.90
2743 11137 5.826208 CCTAAAAGACTACACAAACAACCCT 59.174 40.000 0.00 0.00 0.00 4.34
2745 11139 4.497291 AAGACTACACAAACAACCCTCA 57.503 40.909 0.00 0.00 0.00 3.86
2771 11166 1.282157 AGGGGCGTGCTAGAAAAATCT 59.718 47.619 0.00 0.00 0.00 2.40
2776 11171 3.003480 GCGTGCTAGAAAAATCTGAGGT 58.997 45.455 0.00 0.00 0.00 3.85
2798 11193 2.094182 ACATGTCGATTTACCGAGCACT 60.094 45.455 0.00 0.00 39.43 4.40
2816 11217 7.113124 CCGAGCACTAAGTAATTATAACACGAG 59.887 40.741 0.00 0.00 0.00 4.18
2821 11222 5.961395 AAGTAATTATAACACGAGTGCCG 57.039 39.130 2.76 0.00 45.44 5.69
2905 11314 7.539034 AAATAAATTAGGTTGTTGCCACTCT 57.461 32.000 0.00 0.00 0.00 3.24
2919 11328 4.495422 TGCCACTCTCTTTCTTATTCGAC 58.505 43.478 0.00 0.00 0.00 4.20
2939 11348 0.399091 TTCACATTGGGGTGGGCAAA 60.399 50.000 0.00 0.00 39.27 3.68
2940 11349 0.399091 TCACATTGGGGTGGGCAAAA 60.399 50.000 0.00 0.00 39.27 2.44
2942 11351 1.374568 CATTGGGGTGGGCAAAACC 59.625 57.895 0.00 0.00 36.94 3.27
2954 11363 3.876309 GGCAAAACCCTATCCCTATGA 57.124 47.619 0.00 0.00 0.00 2.15
2955 11364 3.756117 GGCAAAACCCTATCCCTATGAG 58.244 50.000 0.00 0.00 0.00 2.90
2956 11365 3.149981 GCAAAACCCTATCCCTATGAGC 58.850 50.000 0.00 0.00 0.00 4.26
2957 11366 3.435026 GCAAAACCCTATCCCTATGAGCA 60.435 47.826 0.00 0.00 0.00 4.26
2960 11369 3.862600 ACCCTATCCCTATGAGCATCT 57.137 47.619 0.00 0.00 34.92 2.90
2961 11370 3.718723 ACCCTATCCCTATGAGCATCTC 58.281 50.000 0.00 0.00 34.92 2.75
2963 11372 2.692557 CCTATCCCTATGAGCATCTCCG 59.307 54.545 0.00 0.00 34.92 4.63
2964 11373 2.612285 ATCCCTATGAGCATCTCCGA 57.388 50.000 0.00 0.00 34.92 4.55
2965 11374 1.916506 TCCCTATGAGCATCTCCGAG 58.083 55.000 0.00 0.00 34.92 4.63
2966 11375 1.425448 TCCCTATGAGCATCTCCGAGA 59.575 52.381 0.00 0.00 34.92 4.04
2967 11376 1.818060 CCCTATGAGCATCTCCGAGAG 59.182 57.143 4.07 0.00 34.92 3.20
2968 11377 2.554124 CCCTATGAGCATCTCCGAGAGA 60.554 54.545 4.07 6.14 43.20 3.10
2971 11380 1.387539 TGAGCATCTCCGAGAGACTG 58.612 55.000 4.07 0.00 41.76 3.51
2972 11381 1.065126 TGAGCATCTCCGAGAGACTGA 60.065 52.381 4.07 0.00 41.76 3.41
2974 11383 0.030638 GCATCTCCGAGAGACTGAGC 59.969 60.000 4.07 5.25 41.76 4.26
2975 11384 0.667993 CATCTCCGAGAGACTGAGCC 59.332 60.000 4.07 0.00 41.76 4.70
2976 11385 0.817634 ATCTCCGAGAGACTGAGCCG 60.818 60.000 4.07 0.00 41.76 5.52
2977 11386 2.438614 TCCGAGAGACTGAGCCGG 60.439 66.667 0.00 0.00 41.36 6.13
2978 11387 4.200283 CCGAGAGACTGAGCCGGC 62.200 72.222 21.89 21.89 33.47 6.13
2979 11388 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
2980 11389 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
2981 11390 1.448119 CGAGAGACTGAGCCGGCATA 61.448 60.000 31.54 16.21 0.00 3.14
2983 11392 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
2984 11393 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
2985 11394 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
2986 11395 1.696336 AGACTGAGCCGGCATATCATT 59.304 47.619 31.54 17.84 0.00 2.57
2988 11397 2.996621 GACTGAGCCGGCATATCATTAC 59.003 50.000 31.54 13.17 0.00 1.89
2989 11398 1.995484 CTGAGCCGGCATATCATTACG 59.005 52.381 31.54 7.95 0.00 3.18
2990 11399 1.616374 TGAGCCGGCATATCATTACGA 59.384 47.619 31.54 0.00 0.00 3.43
2991 11400 2.036604 TGAGCCGGCATATCATTACGAA 59.963 45.455 31.54 0.00 0.00 3.85
2992 11401 2.668457 GAGCCGGCATATCATTACGAAG 59.332 50.000 31.54 0.00 0.00 3.79
2994 11403 2.412089 GCCGGCATATCATTACGAAGTC 59.588 50.000 24.80 0.00 43.93 3.01
2995 11404 3.649073 CCGGCATATCATTACGAAGTCA 58.351 45.455 0.00 0.00 43.93 3.41
2996 11405 4.245660 CCGGCATATCATTACGAAGTCAT 58.754 43.478 0.00 0.00 43.93 3.06
2997 11406 5.407502 CCGGCATATCATTACGAAGTCATA 58.592 41.667 0.00 0.00 43.93 2.15
2998 11407 5.516696 CCGGCATATCATTACGAAGTCATAG 59.483 44.000 0.00 0.00 43.93 2.23
2999 11408 6.093404 CGGCATATCATTACGAAGTCATAGT 58.907 40.000 0.00 0.00 43.93 2.12
3000 11409 7.248437 CGGCATATCATTACGAAGTCATAGTA 58.752 38.462 0.00 0.00 43.93 1.82
3001 11410 7.915923 CGGCATATCATTACGAAGTCATAGTAT 59.084 37.037 0.00 0.00 43.93 2.12
3002 11411 9.025020 GGCATATCATTACGAAGTCATAGTATG 57.975 37.037 3.55 3.55 43.93 2.39
3003 11412 8.535592 GCATATCATTACGAAGTCATAGTATGC 58.464 37.037 5.18 1.31 43.93 3.14
3004 11413 8.737648 CATATCATTACGAAGTCATAGTATGCG 58.262 37.037 5.18 5.89 43.93 4.73
3005 11414 4.915667 TCATTACGAAGTCATAGTATGCGC 59.084 41.667 0.00 0.00 43.93 6.09
3006 11415 2.135664 ACGAAGTCATAGTATGCGCC 57.864 50.000 4.18 0.00 29.74 6.53
3007 11416 1.681793 ACGAAGTCATAGTATGCGCCT 59.318 47.619 4.18 0.00 29.74 5.52
3008 11417 2.100916 ACGAAGTCATAGTATGCGCCTT 59.899 45.455 4.18 7.15 29.74 4.35
3009 11418 2.472861 CGAAGTCATAGTATGCGCCTTG 59.527 50.000 4.18 0.00 0.00 3.61
3010 11419 3.458189 GAAGTCATAGTATGCGCCTTGT 58.542 45.455 4.18 0.00 0.00 3.16
3011 11420 3.099267 AGTCATAGTATGCGCCTTGTC 57.901 47.619 4.18 0.00 0.00 3.18
3012 11421 1.787155 GTCATAGTATGCGCCTTGTCG 59.213 52.381 4.18 0.00 0.00 4.35
3013 11422 1.407618 TCATAGTATGCGCCTTGTCGT 59.592 47.619 4.18 0.00 0.00 4.34
3014 11423 1.787155 CATAGTATGCGCCTTGTCGTC 59.213 52.381 4.18 0.00 0.00 4.20
3015 11424 0.248336 TAGTATGCGCCTTGTCGTCG 60.248 55.000 4.18 0.00 0.00 5.12
3016 11425 1.515519 GTATGCGCCTTGTCGTCGA 60.516 57.895 4.18 0.00 0.00 4.20
3017 11426 1.515519 TATGCGCCTTGTCGTCGAC 60.516 57.895 18.51 18.51 0.00 4.20
3021 11430 4.047059 GCCTTGTCGTCGACGGGA 62.047 66.667 35.05 20.33 40.29 5.14
3022 11431 2.646719 CCTTGTCGTCGACGGGAA 59.353 61.111 35.05 25.26 40.29 3.97
3023 11432 1.731969 CCTTGTCGTCGACGGGAAC 60.732 63.158 35.05 26.09 40.29 3.62
3036 11445 2.973148 GGGAACGTCTCCTACCACT 58.027 57.895 13.94 0.00 44.68 4.00
3037 11446 0.531200 GGGAACGTCTCCTACCACTG 59.469 60.000 13.94 0.00 44.68 3.66
3038 11447 1.542492 GGAACGTCTCCTACCACTGA 58.458 55.000 8.87 0.00 41.61 3.41
3039 11448 1.891150 GGAACGTCTCCTACCACTGAA 59.109 52.381 8.87 0.00 41.61 3.02
3040 11449 2.298163 GGAACGTCTCCTACCACTGAAA 59.702 50.000 8.87 0.00 41.61 2.69
3041 11450 3.576648 GAACGTCTCCTACCACTGAAAG 58.423 50.000 0.00 0.00 42.29 2.62
3042 11451 1.272769 ACGTCTCCTACCACTGAAAGC 59.727 52.381 0.00 0.00 37.60 3.51
3043 11452 1.732732 CGTCTCCTACCACTGAAAGCG 60.733 57.143 0.00 0.00 37.60 4.68
3044 11453 1.272769 GTCTCCTACCACTGAAAGCGT 59.727 52.381 0.00 0.00 37.60 5.07
3045 11454 2.490903 GTCTCCTACCACTGAAAGCGTA 59.509 50.000 0.00 0.00 37.60 4.42
3046 11455 3.130693 GTCTCCTACCACTGAAAGCGTAT 59.869 47.826 0.00 0.00 37.60 3.06
3047 11456 3.380637 TCTCCTACCACTGAAAGCGTATC 59.619 47.826 0.00 0.00 37.60 2.24
3048 11457 2.098607 TCCTACCACTGAAAGCGTATCG 59.901 50.000 0.00 0.00 37.60 2.92
3060 11469 2.517598 CGTATCGCCGGAAATCCTG 58.482 57.895 5.05 0.00 0.00 3.86
3061 11470 0.031585 CGTATCGCCGGAAATCCTGA 59.968 55.000 5.05 0.00 0.00 3.86
3062 11471 1.537348 CGTATCGCCGGAAATCCTGAA 60.537 52.381 5.05 0.00 0.00 3.02
3063 11472 2.557317 GTATCGCCGGAAATCCTGAAA 58.443 47.619 5.05 0.00 0.00 2.69
3064 11473 2.348411 ATCGCCGGAAATCCTGAAAT 57.652 45.000 5.05 0.00 0.00 2.17
3065 11474 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
3066 11475 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
3067 11476 3.815809 TCGCCGGAAATCCTGAAATAAT 58.184 40.909 5.05 0.00 0.00 1.28
3068 11477 4.963373 TCGCCGGAAATCCTGAAATAATA 58.037 39.130 5.05 0.00 0.00 0.98
3069 11478 5.369833 TCGCCGGAAATCCTGAAATAATAA 58.630 37.500 5.05 0.00 0.00 1.40
3070 11479 5.823570 TCGCCGGAAATCCTGAAATAATAAA 59.176 36.000 5.05 0.00 0.00 1.40
3071 11480 6.488683 TCGCCGGAAATCCTGAAATAATAAAT 59.511 34.615 5.05 0.00 0.00 1.40
3072 11481 7.662258 TCGCCGGAAATCCTGAAATAATAAATA 59.338 33.333 5.05 0.00 0.00 1.40
3073 11482 7.749126 CGCCGGAAATCCTGAAATAATAAATAC 59.251 37.037 5.05 0.00 0.00 1.89
3074 11483 8.573035 GCCGGAAATCCTGAAATAATAAATACA 58.427 33.333 5.05 0.00 0.00 2.29
3094 11503 5.649782 ACAAAAATAATGAGAGCACCAGG 57.350 39.130 0.00 0.00 0.00 4.45
3095 11504 5.324409 ACAAAAATAATGAGAGCACCAGGA 58.676 37.500 0.00 0.00 0.00 3.86
3096 11505 5.183904 ACAAAAATAATGAGAGCACCAGGAC 59.816 40.000 0.00 0.00 0.00 3.85
3097 11506 4.851639 AAATAATGAGAGCACCAGGACT 57.148 40.909 0.00 0.00 0.00 3.85
3098 11507 4.851639 AATAATGAGAGCACCAGGACTT 57.148 40.909 0.00 0.00 0.00 3.01
3099 11508 2.486472 AATGAGAGCACCAGGACTTG 57.514 50.000 0.00 0.00 0.00 3.16
3100 11509 1.649321 ATGAGAGCACCAGGACTTGA 58.351 50.000 0.00 0.00 0.00 3.02
3101 11510 1.423584 TGAGAGCACCAGGACTTGAA 58.576 50.000 0.00 0.00 0.00 2.69
3102 11511 1.070758 TGAGAGCACCAGGACTTGAAC 59.929 52.381 0.00 0.00 0.00 3.18
3103 11512 0.398318 AGAGCACCAGGACTTGAACC 59.602 55.000 0.00 0.00 0.00 3.62
3104 11513 0.606673 GAGCACCAGGACTTGAACCC 60.607 60.000 0.00 0.00 0.00 4.11
3105 11514 1.062488 AGCACCAGGACTTGAACCCT 61.062 55.000 0.00 0.00 0.00 4.34
3111 11520 2.044793 AGGACTTGAACCCTGATGGA 57.955 50.000 0.00 0.00 38.00 3.41
3112 11521 1.630878 AGGACTTGAACCCTGATGGAC 59.369 52.381 0.00 0.00 38.00 4.02
3113 11522 1.630878 GGACTTGAACCCTGATGGACT 59.369 52.381 0.00 0.00 38.00 3.85
3114 11523 2.616510 GGACTTGAACCCTGATGGACTG 60.617 54.545 0.00 0.00 38.00 3.51
3115 11524 1.352352 ACTTGAACCCTGATGGACTGG 59.648 52.381 0.00 0.00 38.00 4.00
3116 11525 1.630369 CTTGAACCCTGATGGACTGGA 59.370 52.381 0.00 0.00 39.52 3.86
3117 11526 1.741028 TGAACCCTGATGGACTGGAA 58.259 50.000 0.00 0.00 39.52 3.53
3118 11527 2.278245 TGAACCCTGATGGACTGGAAT 58.722 47.619 0.00 0.00 39.52 3.01
3119 11528 3.459828 TGAACCCTGATGGACTGGAATA 58.540 45.455 0.00 0.00 39.52 1.75
3120 11529 3.199946 TGAACCCTGATGGACTGGAATAC 59.800 47.826 0.00 0.00 39.52 1.89
3121 11530 2.127708 ACCCTGATGGACTGGAATACC 58.872 52.381 0.00 0.00 39.52 2.73
3122 11531 2.126882 CCCTGATGGACTGGAATACCA 58.873 52.381 0.00 0.00 39.36 3.25
3123 11532 2.158755 CCCTGATGGACTGGAATACCAC 60.159 54.545 0.00 0.00 37.54 4.16
3124 11533 2.774234 CCTGATGGACTGGAATACCACT 59.226 50.000 0.00 0.00 39.52 4.00
3125 11534 3.967326 CCTGATGGACTGGAATACCACTA 59.033 47.826 0.00 0.00 39.52 2.74
3126 11535 4.594920 CCTGATGGACTGGAATACCACTAT 59.405 45.833 0.00 0.00 39.52 2.12
3127 11536 5.279708 CCTGATGGACTGGAATACCACTATC 60.280 48.000 0.00 0.00 39.52 2.08
3128 11537 5.467738 TGATGGACTGGAATACCACTATCT 58.532 41.667 0.00 0.00 41.77 1.98
3129 11538 5.540337 TGATGGACTGGAATACCACTATCTC 59.460 44.000 0.00 0.00 41.77 2.75
3130 11539 5.144159 TGGACTGGAATACCACTATCTCT 57.856 43.478 0.00 0.00 41.77 3.10
3131 11540 5.141182 TGGACTGGAATACCACTATCTCTC 58.859 45.833 0.00 0.00 41.77 3.20
3132 11541 5.103473 TGGACTGGAATACCACTATCTCTCT 60.103 44.000 0.00 0.00 41.77 3.10
3133 11542 6.102762 TGGACTGGAATACCACTATCTCTCTA 59.897 42.308 0.00 0.00 41.77 2.43
3134 11543 7.005296 GGACTGGAATACCACTATCTCTCTAA 58.995 42.308 0.00 0.00 41.77 2.10
3135 11544 7.040271 GGACTGGAATACCACTATCTCTCTAAC 60.040 44.444 0.00 0.00 41.77 2.34
3136 11545 6.778559 ACTGGAATACCACTATCTCTCTAACC 59.221 42.308 0.00 0.00 41.77 2.85
3137 11546 6.679542 TGGAATACCACTATCTCTCTAACCA 58.320 40.000 0.00 0.00 41.77 3.67
3138 11547 7.306013 TGGAATACCACTATCTCTCTAACCAT 58.694 38.462 0.00 0.00 41.77 3.55
3139 11548 7.451877 TGGAATACCACTATCTCTCTAACCATC 59.548 40.741 0.00 0.00 41.77 3.51
3140 11549 7.093684 GGAATACCACTATCTCTCTAACCATCC 60.094 44.444 0.00 0.00 35.97 3.51
3141 11550 5.144159 ACCACTATCTCTCTAACCATCCA 57.856 43.478 0.00 0.00 0.00 3.41
3142 11551 5.529289 ACCACTATCTCTCTAACCATCCAA 58.471 41.667 0.00 0.00 0.00 3.53
3143 11552 5.600484 ACCACTATCTCTCTAACCATCCAAG 59.400 44.000 0.00 0.00 0.00 3.61
3144 11553 5.510520 CCACTATCTCTCTAACCATCCAAGC 60.511 48.000 0.00 0.00 0.00 4.01
3145 11554 5.069648 CACTATCTCTCTAACCATCCAAGCA 59.930 44.000 0.00 0.00 0.00 3.91
3146 11555 3.895232 TCTCTCTAACCATCCAAGCAC 57.105 47.619 0.00 0.00 0.00 4.40
3147 11556 3.173151 TCTCTCTAACCATCCAAGCACA 58.827 45.455 0.00 0.00 0.00 4.57
3148 11557 3.776969 TCTCTCTAACCATCCAAGCACAT 59.223 43.478 0.00 0.00 0.00 3.21
3149 11558 3.875727 CTCTCTAACCATCCAAGCACATG 59.124 47.826 0.00 0.00 0.00 3.21
3150 11559 3.264193 TCTCTAACCATCCAAGCACATGT 59.736 43.478 0.00 0.00 0.00 3.21
3151 11560 4.012374 CTCTAACCATCCAAGCACATGTT 58.988 43.478 0.00 0.00 0.00 2.71
3152 11561 3.758023 TCTAACCATCCAAGCACATGTTG 59.242 43.478 0.00 0.00 0.00 3.33
3153 11562 1.259609 ACCATCCAAGCACATGTTGG 58.740 50.000 8.52 8.52 45.18 3.77
3154 11563 1.259609 CCATCCAAGCACATGTTGGT 58.740 50.000 13.50 4.85 44.30 3.67
3156 11565 2.353011 CCATCCAAGCACATGTTGGTTC 60.353 50.000 13.50 0.00 44.32 3.62
3157 11566 0.950836 TCCAAGCACATGTTGGTTCG 59.049 50.000 13.50 6.69 44.32 3.95
3158 11567 0.667993 CCAAGCACATGTTGGTTCGT 59.332 50.000 6.86 0.00 44.32 3.85
3159 11568 1.876799 CCAAGCACATGTTGGTTCGTA 59.123 47.619 6.86 0.00 44.32 3.43
3160 11569 2.292016 CCAAGCACATGTTGGTTCGTAA 59.708 45.455 6.86 0.00 44.32 3.18
3161 11570 3.243234 CCAAGCACATGTTGGTTCGTAAA 60.243 43.478 6.86 0.00 44.32 2.01
3162 11571 4.355437 CAAGCACATGTTGGTTCGTAAAA 58.645 39.130 0.00 0.00 44.32 1.52
3163 11572 4.846779 AGCACATGTTGGTTCGTAAAAT 57.153 36.364 0.00 0.00 28.85 1.82
3164 11573 5.950758 AGCACATGTTGGTTCGTAAAATA 57.049 34.783 0.00 0.00 28.85 1.40
3165 11574 5.938322 AGCACATGTTGGTTCGTAAAATAG 58.062 37.500 0.00 0.00 28.85 1.73
3166 11575 5.472137 AGCACATGTTGGTTCGTAAAATAGT 59.528 36.000 0.00 0.00 28.85 2.12
3167 11576 6.651643 AGCACATGTTGGTTCGTAAAATAGTA 59.348 34.615 0.00 0.00 28.85 1.82
3168 11577 6.739550 GCACATGTTGGTTCGTAAAATAGTAC 59.260 38.462 0.00 0.00 0.00 2.73
3171 11580 9.880157 ACATGTTGGTTCGTAAAATAGTACTAT 57.120 29.630 9.71 9.71 0.00 2.12
3208 11617 3.655615 AAGAGTGACGAGGAGAGGTAT 57.344 47.619 0.00 0.00 0.00 2.73
3283 11698 0.594796 CGCATCCACATCGATCGACA 60.595 55.000 22.06 0.00 0.00 4.35
3285 11700 1.536922 GCATCCACATCGATCGACAGT 60.537 52.381 22.06 18.88 0.00 3.55
3364 12018 4.632688 ACACGTTATGGTTACCAACTATGC 59.367 41.667 8.63 0.00 36.95 3.14
3506 12169 1.587613 GAGACATCTCGCAGTCGCC 60.588 63.158 0.00 0.00 39.67 5.54
3541 12208 5.511202 CCATCTCAGAGAAAATCTAGGAGCC 60.511 48.000 3.63 0.00 36.10 4.70
3719 12446 3.687102 CCGACTGTGCCCACCGTA 61.687 66.667 0.00 0.00 0.00 4.02
3796 12523 4.873810 CCCAATGCCCGCCATCGA 62.874 66.667 0.00 0.00 38.10 3.59
3884 12611 2.837883 CGCCATTCCTTCCATGCCG 61.838 63.158 0.00 0.00 0.00 5.69
3935 12662 1.016627 CGACCGTCAACGTCCCTATA 58.983 55.000 1.48 0.00 37.74 1.31
3968 12695 1.209504 CCGCCTCCATCAACTTAGGAA 59.790 52.381 0.00 0.00 0.00 3.36
4296 13052 8.798859 AATATTGTTGACTCAAGCTCTTGTAT 57.201 30.769 9.20 0.00 41.16 2.29
4379 13135 1.115467 ATGAGCGAACCCTGTCTAGG 58.885 55.000 0.00 0.00 44.18 3.02
4396 13152 7.200434 TGTCTAGGAGGAGAAGCAAAATTAT 57.800 36.000 0.00 0.00 0.00 1.28
4397 13153 8.319057 TGTCTAGGAGGAGAAGCAAAATTATA 57.681 34.615 0.00 0.00 0.00 0.98
4399 13155 8.425703 GTCTAGGAGGAGAAGCAAAATTATAGT 58.574 37.037 0.00 0.00 0.00 2.12
4400 13156 8.424918 TCTAGGAGGAGAAGCAAAATTATAGTG 58.575 37.037 0.00 0.00 0.00 2.74
4402 13158 6.158695 AGGAGGAGAAGCAAAATTATAGTGGA 59.841 38.462 0.00 0.00 0.00 4.02
4403 13159 6.484977 GGAGGAGAAGCAAAATTATAGTGGAG 59.515 42.308 0.00 0.00 0.00 3.86
4405 13161 6.158695 AGGAGAAGCAAAATTATAGTGGAGGA 59.841 38.462 0.00 0.00 0.00 3.71
4406 13162 6.484977 GGAGAAGCAAAATTATAGTGGAGGAG 59.515 42.308 0.00 0.00 0.00 3.69
4426 13182 6.578944 AGGAGGACACAATAAAAACAAAACC 58.421 36.000 0.00 0.00 0.00 3.27
4428 13184 6.256975 GGAGGACACAATAAAAACAAAACCAC 59.743 38.462 0.00 0.00 0.00 4.16
4429 13185 5.808030 AGGACACAATAAAAACAAAACCACG 59.192 36.000 0.00 0.00 0.00 4.94
4430 13186 5.805994 GGACACAATAAAAACAAAACCACGA 59.194 36.000 0.00 0.00 0.00 4.35
4432 13188 6.157211 ACACAATAAAAACAAAACCACGACA 58.843 32.000 0.00 0.00 0.00 4.35
4434 13190 7.009723 ACACAATAAAAACAAAACCACGACATC 59.990 33.333 0.00 0.00 0.00 3.06
4435 13191 7.221838 CACAATAAAAACAAAACCACGACATCT 59.778 33.333 0.00 0.00 0.00 2.90
4437 13193 4.974368 AAAACAAAACCACGACATCTGA 57.026 36.364 0.00 0.00 0.00 3.27
4438 13194 4.974368 AAACAAAACCACGACATCTGAA 57.026 36.364 0.00 0.00 0.00 3.02
4439 13195 5.514274 AAACAAAACCACGACATCTGAAT 57.486 34.783 0.00 0.00 0.00 2.57
4441 13197 6.627395 AACAAAACCACGACATCTGAATAA 57.373 33.333 0.00 0.00 0.00 1.40
4442 13198 6.627395 ACAAAACCACGACATCTGAATAAA 57.373 33.333 0.00 0.00 0.00 1.40
4443 13199 7.033530 ACAAAACCACGACATCTGAATAAAA 57.966 32.000 0.00 0.00 0.00 1.52
4444 13200 7.657336 ACAAAACCACGACATCTGAATAAAAT 58.343 30.769 0.00 0.00 0.00 1.82
4445 13201 8.788806 ACAAAACCACGACATCTGAATAAAATA 58.211 29.630 0.00 0.00 0.00 1.40
4446 13202 9.619316 CAAAACCACGACATCTGAATAAAATAA 57.381 29.630 0.00 0.00 0.00 1.40
4447 13203 9.620660 AAAACCACGACATCTGAATAAAATAAC 57.379 29.630 0.00 0.00 0.00 1.89
4448 13204 7.915293 ACCACGACATCTGAATAAAATAACA 57.085 32.000 0.00 0.00 0.00 2.41
4449 13205 8.330466 ACCACGACATCTGAATAAAATAACAA 57.670 30.769 0.00 0.00 0.00 2.83
4450 13206 8.234546 ACCACGACATCTGAATAAAATAACAAC 58.765 33.333 0.00 0.00 0.00 3.32
4451 13207 8.233868 CCACGACATCTGAATAAAATAACAACA 58.766 33.333 0.00 0.00 0.00 3.33
4452 13208 9.605955 CACGACATCTGAATAAAATAACAACAA 57.394 29.630 0.00 0.00 0.00 2.83
4453 13209 9.607285 ACGACATCTGAATAAAATAACAACAAC 57.393 29.630 0.00 0.00 0.00 3.32
4454 13210 9.061610 CGACATCTGAATAAAATAACAACAACC 57.938 33.333 0.00 0.00 0.00 3.77
4455 13211 9.906660 GACATCTGAATAAAATAACAACAACCA 57.093 29.630 0.00 0.00 0.00 3.67
4473 13229 9.134734 CAACAACCACATATATAAACAACAACC 57.865 33.333 0.00 0.00 0.00 3.77
4474 13230 7.832769 ACAACCACATATATAAACAACAACCC 58.167 34.615 0.00 0.00 0.00 4.11
4491 13250 1.324383 CCCCATAAAATACACGGCCC 58.676 55.000 0.00 0.00 0.00 5.80
4502 13261 6.777213 AAATACACGGCCCAACAATATAAA 57.223 33.333 0.00 0.00 0.00 1.40
4511 13270 5.453198 GGCCCAACAATATAAAATGGTGAGG 60.453 44.000 0.00 4.78 36.33 3.86
4514 13273 7.470009 GCCCAACAATATAAAATGGTGAGGTAG 60.470 40.741 3.82 0.00 36.33 3.18
4521 13280 1.372501 AATGGTGAGGTAGCCCACTT 58.627 50.000 6.53 0.00 33.99 3.16
4530 13289 3.178865 AGGTAGCCCACTTACAAAGCTA 58.821 45.455 0.00 0.00 35.03 3.32
4537 13296 5.538433 AGCCCACTTACAAAGCTAATTTCAA 59.462 36.000 0.00 0.00 30.46 2.69
4538 13297 5.863935 GCCCACTTACAAAGCTAATTTCAAG 59.136 40.000 0.00 0.00 0.00 3.02
4552 13311 5.376854 AATTTCAAGACAATCAGGGAACG 57.623 39.130 0.00 0.00 0.00 3.95
4565 13324 0.788391 GGGAACGTAGAACACAAGCG 59.212 55.000 0.00 0.00 0.00 4.68
4600 13359 6.333416 CGAAAGATATCACAGAAAGACCTGA 58.667 40.000 5.32 0.00 37.59 3.86
4604 13363 7.487822 AGATATCACAGAAAGACCTGAGAAA 57.512 36.000 5.32 0.00 37.33 2.52
4623 13382 1.624336 AACAGTCACACTACGCCCTA 58.376 50.000 0.00 0.00 0.00 3.53
4624 13383 1.174783 ACAGTCACACTACGCCCTAG 58.825 55.000 0.00 0.00 0.00 3.02
4626 13385 2.290514 ACAGTCACACTACGCCCTAGTA 60.291 50.000 0.00 0.00 33.53 1.82
4627 13386 2.097142 CAGTCACACTACGCCCTAGTAC 59.903 54.545 0.00 0.00 33.53 2.73
4628 13387 2.086869 GTCACACTACGCCCTAGTACA 58.913 52.381 0.00 0.00 33.53 2.90
4680 14950 4.280494 ACGGCGTCGCTGTCAAGT 62.280 61.111 25.69 2.81 45.94 3.16
4681 14951 3.470567 CGGCGTCGCTGTCAAGTC 61.471 66.667 18.08 0.00 0.00 3.01
4762 15142 0.399075 CCCCAAGTCGGTTTGTACCT 59.601 55.000 0.00 0.00 42.66 3.08
4937 19302 2.043652 ATCGCCAAGGCTGCCAAT 60.044 55.556 22.65 6.29 39.32 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.077184 CCAACCTAGCCGCCACGA 62.077 66.667 0.00 0.00 0.00 4.35
18 19 4.253685 ACATATATATGTGAGGCGTTGGC 58.746 43.478 24.39 0.00 44.66 4.52
30 31 4.081697 TCCACCTGGACGCACATATATATG 60.082 45.833 19.21 19.21 39.78 1.78
31 32 4.093743 TCCACCTGGACGCACATATATAT 58.906 43.478 0.00 0.00 39.78 0.86
32 33 3.502356 TCCACCTGGACGCACATATATA 58.498 45.455 0.00 0.00 39.78 0.86
33 34 2.300152 CTCCACCTGGACGCACATATAT 59.700 50.000 0.00 0.00 39.78 0.86
34 35 1.686587 CTCCACCTGGACGCACATATA 59.313 52.381 0.00 0.00 39.78 0.86
35 36 0.465705 CTCCACCTGGACGCACATAT 59.534 55.000 0.00 0.00 39.78 1.78
37 38 1.892819 CTCTCCACCTGGACGCACAT 61.893 60.000 0.00 0.00 39.78 3.21
38 39 2.523168 TCTCCACCTGGACGCACA 60.523 61.111 0.00 0.00 39.78 4.57
39 40 2.262915 CTCTCCACCTGGACGCAC 59.737 66.667 0.00 0.00 39.78 5.34
40 41 2.117423 TCTCTCCACCTGGACGCA 59.883 61.111 0.00 0.00 39.78 5.24
41 42 2.574399 GTCTCTCCACCTGGACGC 59.426 66.667 0.00 0.00 39.78 5.19
42 43 2.878429 CGTCTCTCCACCTGGACG 59.122 66.667 0.00 0.00 43.74 4.79
43 44 0.894184 TCACGTCTCTCCACCTGGAC 60.894 60.000 0.00 0.00 39.78 4.02
44 45 0.609406 CTCACGTCTCTCCACCTGGA 60.609 60.000 0.00 0.00 43.08 3.86
45 46 1.886585 CTCACGTCTCTCCACCTGG 59.113 63.158 0.00 0.00 0.00 4.45
47 48 0.540830 AAGCTCACGTCTCTCCACCT 60.541 55.000 0.00 0.00 0.00 4.00
48 49 0.389166 CAAGCTCACGTCTCTCCACC 60.389 60.000 0.00 0.00 0.00 4.61
49 50 0.598562 TCAAGCTCACGTCTCTCCAC 59.401 55.000 0.00 0.00 0.00 4.02
50 51 0.598562 GTCAAGCTCACGTCTCTCCA 59.401 55.000 0.00 0.00 0.00 3.86
51 52 0.109039 GGTCAAGCTCACGTCTCTCC 60.109 60.000 0.00 0.00 0.00 3.71
52 53 0.109039 GGGTCAAGCTCACGTCTCTC 60.109 60.000 0.00 0.00 0.00 3.20
53 54 0.827925 TGGGTCAAGCTCACGTCTCT 60.828 55.000 0.00 0.00 0.00 3.10
54 55 0.667792 GTGGGTCAAGCTCACGTCTC 60.668 60.000 0.00 0.00 39.01 3.36
56 57 3.952811 GTGGGTCAAGCTCACGTC 58.047 61.111 0.00 0.00 39.01 4.34
59 60 1.668151 GGACGTGGGTCAAGCTCAC 60.668 63.158 0.00 0.00 45.28 3.51
60 61 2.741092 GGACGTGGGTCAAGCTCA 59.259 61.111 0.00 0.00 45.28 4.26
62 63 2.915659 TCGGACGTGGGTCAAGCT 60.916 61.111 0.00 0.00 45.28 3.74
63 64 2.432628 CTCGGACGTGGGTCAAGC 60.433 66.667 0.00 0.00 45.28 4.01
65 66 2.567497 GGACTCGGACGTGGGTCAA 61.567 63.158 8.06 0.00 45.28 3.18
66 67 2.987547 GGACTCGGACGTGGGTCA 60.988 66.667 8.06 0.00 45.28 4.02
67 68 4.112341 CGGACTCGGACGTGGGTC 62.112 72.222 0.00 0.00 42.66 4.46
68 69 4.962836 ACGGACTCGGACGTGGGT 62.963 66.667 0.00 0.00 42.39 4.51
72 73 2.188829 TTGTCACGGACTCGGACGT 61.189 57.895 0.00 0.00 45.25 4.34
73 74 1.728426 GTTGTCACGGACTCGGACG 60.728 63.158 5.77 0.00 41.39 4.79
74 75 1.372623 GGTTGTCACGGACTCGGAC 60.373 63.158 5.77 0.00 41.39 4.79
75 76 2.567497 GGGTTGTCACGGACTCGGA 61.567 63.158 5.77 0.00 41.39 4.55
76 77 2.048503 GGGTTGTCACGGACTCGG 60.049 66.667 5.77 0.00 41.39 4.63
77 78 1.663702 GTGGGTTGTCACGGACTCG 60.664 63.158 5.77 0.00 43.02 4.18
78 79 4.355925 GTGGGTTGTCACGGACTC 57.644 61.111 5.77 0.54 33.15 3.36
85 86 0.665068 CGTCGAATCGTGGGTTGTCA 60.665 55.000 1.52 0.00 0.00 3.58
86 87 0.665369 ACGTCGAATCGTGGGTTGTC 60.665 55.000 1.52 0.00 42.56 3.18
88 89 0.388134 AGACGTCGAATCGTGGGTTG 60.388 55.000 10.46 0.00 44.21 3.77
89 90 0.109412 GAGACGTCGAATCGTGGGTT 60.109 55.000 10.46 0.00 44.21 4.11
90 91 1.239296 TGAGACGTCGAATCGTGGGT 61.239 55.000 10.46 0.00 44.21 4.51
91 92 0.523546 CTGAGACGTCGAATCGTGGG 60.524 60.000 10.46 0.00 44.21 4.61
92 93 0.446616 TCTGAGACGTCGAATCGTGG 59.553 55.000 10.46 0.00 44.21 4.94
93 94 2.367772 GATCTGAGACGTCGAATCGTG 58.632 52.381 10.46 0.00 44.21 4.35
94 95 1.004821 CGATCTGAGACGTCGAATCGT 60.005 52.381 23.96 0.15 46.88 3.73
95 96 1.004821 ACGATCTGAGACGTCGAATCG 60.005 52.381 27.37 27.37 38.34 3.34
96 97 2.367772 CACGATCTGAGACGTCGAATC 58.632 52.381 11.92 10.50 40.76 2.52
98 99 0.446616 CCACGATCTGAGACGTCGAA 59.553 55.000 11.92 1.15 40.76 3.71
99 100 1.978712 GCCACGATCTGAGACGTCGA 61.979 60.000 11.92 1.58 40.76 4.20
100 101 1.583967 GCCACGATCTGAGACGTCG 60.584 63.158 10.46 4.09 40.76 5.12
101 102 1.226717 GGCCACGATCTGAGACGTC 60.227 63.158 7.70 7.70 40.76 4.34
102 103 2.711922 GGGCCACGATCTGAGACGT 61.712 63.158 4.39 6.81 43.50 4.34
103 104 2.105128 GGGCCACGATCTGAGACG 59.895 66.667 4.39 5.70 0.00 4.18
104 105 1.142748 CTGGGCCACGATCTGAGAC 59.857 63.158 0.00 0.00 0.00 3.36
105 106 2.725312 GCTGGGCCACGATCTGAGA 61.725 63.158 0.00 0.00 0.00 3.27
106 107 1.395045 TAGCTGGGCCACGATCTGAG 61.395 60.000 0.00 0.00 0.00 3.35
107 108 0.760567 ATAGCTGGGCCACGATCTGA 60.761 55.000 0.00 0.00 0.00 3.27
108 109 0.320247 GATAGCTGGGCCACGATCTG 60.320 60.000 0.00 0.00 0.00 2.90
109 110 0.760567 TGATAGCTGGGCCACGATCT 60.761 55.000 20.67 11.90 0.00 2.75
110 111 0.106708 TTGATAGCTGGGCCACGATC 59.893 55.000 0.00 11.64 0.00 3.69
111 112 0.546122 TTTGATAGCTGGGCCACGAT 59.454 50.000 0.00 1.42 0.00 3.73
112 113 0.107703 CTTTGATAGCTGGGCCACGA 60.108 55.000 0.00 0.00 0.00 4.35
113 114 0.107703 TCTTTGATAGCTGGGCCACG 60.108 55.000 0.00 0.00 0.00 4.94
114 115 1.383523 GTCTTTGATAGCTGGGCCAC 58.616 55.000 0.00 0.00 0.00 5.01
115 116 0.255890 GGTCTTTGATAGCTGGGCCA 59.744 55.000 5.85 5.85 0.00 5.36
116 117 0.466372 GGGTCTTTGATAGCTGGGCC 60.466 60.000 0.00 0.00 0.00 5.80
117 118 0.548510 AGGGTCTTTGATAGCTGGGC 59.451 55.000 0.00 0.00 0.00 5.36
118 119 1.141858 GGAGGGTCTTTGATAGCTGGG 59.858 57.143 0.00 0.00 0.00 4.45
119 120 1.839994 TGGAGGGTCTTTGATAGCTGG 59.160 52.381 0.00 0.00 0.00 4.85
122 123 4.578105 CAGAAATGGAGGGTCTTTGATAGC 59.422 45.833 0.00 0.00 0.00 2.97
123 124 5.819901 GTCAGAAATGGAGGGTCTTTGATAG 59.180 44.000 0.00 0.00 0.00 2.08
124 125 5.339200 GGTCAGAAATGGAGGGTCTTTGATA 60.339 44.000 0.00 0.00 0.00 2.15
125 126 4.568592 GGTCAGAAATGGAGGGTCTTTGAT 60.569 45.833 0.00 0.00 0.00 2.57
126 127 3.244911 GGTCAGAAATGGAGGGTCTTTGA 60.245 47.826 0.00 0.00 0.00 2.69
128 129 2.290323 CGGTCAGAAATGGAGGGTCTTT 60.290 50.000 0.00 0.00 0.00 2.52
129 130 1.279271 CGGTCAGAAATGGAGGGTCTT 59.721 52.381 0.00 0.00 0.00 3.01
130 131 0.905357 CGGTCAGAAATGGAGGGTCT 59.095 55.000 0.00 0.00 0.00 3.85
131 132 0.107654 CCGGTCAGAAATGGAGGGTC 60.108 60.000 0.00 0.00 0.00 4.46
132 133 1.991230 CCGGTCAGAAATGGAGGGT 59.009 57.895 0.00 0.00 0.00 4.34
133 134 1.452108 GCCGGTCAGAAATGGAGGG 60.452 63.158 1.90 0.00 0.00 4.30
134 135 0.322456 TTGCCGGTCAGAAATGGAGG 60.322 55.000 1.90 0.00 0.00 4.30
135 136 1.533625 TTTGCCGGTCAGAAATGGAG 58.466 50.000 1.90 0.00 0.00 3.86
137 138 2.810439 TTTTTGCCGGTCAGAAATGG 57.190 45.000 1.90 0.00 0.00 3.16
138 139 4.327087 GCTTATTTTTGCCGGTCAGAAATG 59.673 41.667 24.44 15.87 39.13 2.32
139 140 4.494484 GCTTATTTTTGCCGGTCAGAAAT 58.506 39.130 21.82 21.82 40.96 2.17
140 141 3.610585 CGCTTATTTTTGCCGGTCAGAAA 60.611 43.478 13.93 13.93 33.96 2.52
143 144 1.895051 CGCTTATTTTTGCCGGTCAG 58.105 50.000 1.90 0.00 0.00 3.51
144 145 0.109504 GCGCTTATTTTTGCCGGTCA 60.110 50.000 1.90 0.00 0.00 4.02
145 146 0.109504 TGCGCTTATTTTTGCCGGTC 60.110 50.000 9.73 0.00 0.00 4.79
146 147 0.530288 ATGCGCTTATTTTTGCCGGT 59.470 45.000 9.73 0.00 0.00 5.28
147 148 2.384382 CTATGCGCTTATTTTTGCCGG 58.616 47.619 9.73 0.00 0.00 6.13
162 163 1.506493 CACTCTTCATCCGCCTATGC 58.494 55.000 0.00 0.00 0.00 3.14
164 165 0.032678 CGCACTCTTCATCCGCCTAT 59.967 55.000 0.00 0.00 0.00 2.57
166 167 2.185350 CGCACTCTTCATCCGCCT 59.815 61.111 0.00 0.00 0.00 5.52
167 168 3.567797 GCGCACTCTTCATCCGCC 61.568 66.667 0.30 0.00 38.84 6.13
168 169 3.918220 CGCGCACTCTTCATCCGC 61.918 66.667 8.75 0.00 41.10 5.54
169 170 2.202610 TCGCGCACTCTTCATCCG 60.203 61.111 8.75 0.00 0.00 4.18
170 171 1.880340 CCTCGCGCACTCTTCATCC 60.880 63.158 8.75 0.00 0.00 3.51
171 172 1.880340 CCCTCGCGCACTCTTCATC 60.880 63.158 8.75 0.00 0.00 2.92
172 173 2.185350 CCCTCGCGCACTCTTCAT 59.815 61.111 8.75 0.00 0.00 2.57
173 174 4.742201 GCCCTCGCGCACTCTTCA 62.742 66.667 8.75 0.00 0.00 3.02
193 194 9.058174 CATGCTATTGAAGATTGAGAAGAGAAT 57.942 33.333 0.00 0.00 0.00 2.40
216 217 2.368439 TGAGGGATTTTCTTCCGCATG 58.632 47.619 0.00 0.00 36.58 4.06
235 236 4.822026 AGAAGAAGTTGGACCTCGTTATG 58.178 43.478 0.00 0.00 0.00 1.90
258 259 1.471119 TAGTCTCAACCCGCTAGTGG 58.529 55.000 15.87 15.87 0.00 4.00
266 267 3.782656 TGGGAAGTTTAGTCTCAACCC 57.217 47.619 0.00 0.00 36.92 4.11
287 288 7.185318 TGTAGGGTTTCGTAATAAAGGATGA 57.815 36.000 0.00 0.00 0.00 2.92
293 294 7.345392 AGGGTCTATGTAGGGTTTCGTAATAAA 59.655 37.037 0.00 0.00 0.00 1.40
303 304 7.766736 AATCTTTAAGGGTCTATGTAGGGTT 57.233 36.000 0.00 0.00 0.00 4.11
305 306 9.121658 GAAAAATCTTTAAGGGTCTATGTAGGG 57.878 37.037 0.00 0.00 0.00 3.53
416 417 1.130054 ACAGGGCCACACTCACTCAT 61.130 55.000 6.18 0.00 0.00 2.90
417 418 1.344953 AACAGGGCCACACTCACTCA 61.345 55.000 6.18 0.00 0.00 3.41
578 586 2.400399 CTCGCCGTTTTGACTCTGTTA 58.600 47.619 0.00 0.00 0.00 2.41
639 647 5.745514 TGCAAGTAACTAGTCGATCGTATC 58.254 41.667 15.94 7.25 0.00 2.24
640 648 5.746307 TGCAAGTAACTAGTCGATCGTAT 57.254 39.130 15.94 7.52 0.00 3.06
641 649 5.327091 GTTGCAAGTAACTAGTCGATCGTA 58.673 41.667 15.94 0.00 0.00 3.43
642 650 4.164294 GTTGCAAGTAACTAGTCGATCGT 58.836 43.478 15.94 0.00 0.00 3.73
643 651 3.546670 GGTTGCAAGTAACTAGTCGATCG 59.453 47.826 9.36 9.36 0.00 3.69
690 698 3.795623 ATCTTCAAATGCAGTGCCATC 57.204 42.857 13.72 0.00 0.00 3.51
831 4387 4.962995 TCTGTATTTAGGTGAGAAGAGGGG 59.037 45.833 0.00 0.00 0.00 4.79
921 4518 2.576191 AGGCTGGTTGTTGGCTAGATTA 59.424 45.455 0.00 0.00 37.32 1.75
1019 4618 1.341285 TGGGAGGTGATTGCAAGATGG 60.341 52.381 4.94 0.00 0.00 3.51
1193 4836 2.662596 CAGGGACGGCACTAGCAA 59.337 61.111 0.00 0.00 44.61 3.91
1774 6165 6.364435 GTGAAAAGGCTGACAAAAATCATCTC 59.636 38.462 0.00 0.00 0.00 2.75
1775 6166 6.041296 AGTGAAAAGGCTGACAAAAATCATCT 59.959 34.615 0.00 0.00 0.00 2.90
1776 6167 6.218746 AGTGAAAAGGCTGACAAAAATCATC 58.781 36.000 0.00 0.00 0.00 2.92
1778 6169 5.596836 AGTGAAAAGGCTGACAAAAATCA 57.403 34.783 0.00 0.00 0.00 2.57
1779 6170 9.691362 TTATAAGTGAAAAGGCTGACAAAAATC 57.309 29.630 0.00 0.00 0.00 2.17
1780 6171 9.476202 GTTATAAGTGAAAAGGCTGACAAAAAT 57.524 29.630 0.00 0.00 0.00 1.82
1781 6172 8.691797 AGTTATAAGTGAAAAGGCTGACAAAAA 58.308 29.630 0.00 0.00 0.00 1.94
1803 7264 8.565896 AGACTGCATGTTCAATTAATCAGTTA 57.434 30.769 0.00 0.00 34.17 2.24
1804 7265 7.362401 GGAGACTGCATGTTCAATTAATCAGTT 60.362 37.037 0.00 0.00 34.17 3.16
1825 7286 3.926616 TCCGAATCTGTCAAAAGGAGAC 58.073 45.455 0.00 0.00 36.55 3.36
1826 7287 4.617253 TTCCGAATCTGTCAAAAGGAGA 57.383 40.909 0.00 0.00 0.00 3.71
1869 7330 2.030540 CGGAAGTTTACGTGAGGAGACA 60.031 50.000 0.00 0.00 0.00 3.41
1893 7354 0.958382 GGCGACATTAAGTGGTGCCA 60.958 55.000 12.98 0.00 45.95 4.92
1958 7652 1.873698 ACAACAGTACAAACGGCGAT 58.126 45.000 16.62 0.00 0.00 4.58
1998 9062 4.077108 TGCTGTGCTTTCATCAAGATCTT 58.923 39.130 0.88 0.88 33.80 2.40
2010 9074 1.021202 TTACGCTTGTGCTGTGCTTT 58.979 45.000 0.00 0.00 36.97 3.51
2012 9076 0.588252 CTTTACGCTTGTGCTGTGCT 59.412 50.000 0.00 0.00 36.97 4.40
2149 9230 0.318107 GTTCGGACCGTCAAGTTCGA 60.318 55.000 14.79 0.00 45.87 3.71
2196 9285 1.796459 CGGTTAAGACCACGGACAAAG 59.204 52.381 0.00 0.00 46.91 2.77
2208 9297 4.383770 GGGATTTCAGACATCCGGTTAAGA 60.384 45.833 9.17 0.00 41.26 2.10
2215 9304 2.700897 ACTAGGGGATTTCAGACATCCG 59.299 50.000 9.17 0.00 41.26 4.18
2219 9308 6.954684 GGAGATATACTAGGGGATTTCAGACA 59.045 42.308 0.00 0.00 0.00 3.41
2242 9331 3.264964 GCCTATATAACCCCCGATTTGGA 59.735 47.826 0.00 0.00 42.00 3.53
2250 9339 1.277273 GGACACGCCTATATAACCCCC 59.723 57.143 0.00 0.00 0.00 5.40
2257 9348 1.272490 CACATCCGGACACGCCTATAT 59.728 52.381 6.12 0.00 39.22 0.86
2311 9406 0.770499 TTGTGATGGCCTTGGAGTCA 59.230 50.000 3.32 0.00 0.00 3.41
2320 10579 7.099120 AGAATAAAAATGAGTTTGTGATGGCC 58.901 34.615 0.00 0.00 0.00 5.36
2341 10600 5.194537 AGAGGAGAGAGAAGGAGAAGAGAAT 59.805 44.000 0.00 0.00 0.00 2.40
2342 10601 4.540099 AGAGGAGAGAGAAGGAGAAGAGAA 59.460 45.833 0.00 0.00 0.00 2.87
2343 10602 4.111577 AGAGGAGAGAGAAGGAGAAGAGA 58.888 47.826 0.00 0.00 0.00 3.10
2350 10611 2.567862 TGGAGAGAGGAGAGAGAAGGA 58.432 52.381 0.00 0.00 0.00 3.36
2409 10799 3.423154 GTCCTTTGTGCTCGGCCG 61.423 66.667 22.12 22.12 0.00 6.13
2457 10849 2.919328 GCTTGGGCAGTTGGGCTT 60.919 61.111 0.00 0.00 42.84 4.35
2649 11043 4.782252 TGTTGTTTTCGTTCTTACTCCG 57.218 40.909 0.00 0.00 0.00 4.63
2653 11047 8.803799 ACATTTCAATGTTGTTTTCGTTCTTAC 58.196 29.630 0.00 0.00 46.95 2.34
2701 11095 2.642700 CCGACTTGGGCGTTTTGG 59.357 61.111 0.00 0.00 0.00 3.28
2743 11137 0.978151 TAGCACGCCCCTTTTAGTGA 59.022 50.000 0.00 0.00 36.79 3.41
2745 11139 1.272807 TCTAGCACGCCCCTTTTAGT 58.727 50.000 0.00 0.00 0.00 2.24
2754 11148 2.352960 CCTCAGATTTTTCTAGCACGCC 59.647 50.000 0.00 0.00 0.00 5.68
2771 11166 3.695556 TCGGTAAATCGACATGTACCTCA 59.304 43.478 10.67 0.00 39.92 3.86
2776 11171 3.129813 AGTGCTCGGTAAATCGACATGTA 59.870 43.478 0.00 0.00 35.18 2.29
2798 11193 5.459762 GCGGCACTCGTGTTATAATTACTTA 59.540 40.000 0.00 0.00 41.72 2.24
2816 11217 3.376540 TGTTAACAAATTTCAGCGGCAC 58.623 40.909 5.64 0.00 0.00 5.01
2821 11222 7.010923 TGGTGAACATTGTTAACAAATTTCAGC 59.989 33.333 36.23 36.23 46.14 4.26
2905 11314 6.371548 CCCAATGTGAAGTCGAATAAGAAAGA 59.628 38.462 0.00 0.00 0.00 2.52
2919 11328 0.831288 TTGCCCACCCCAATGTGAAG 60.831 55.000 0.00 0.00 38.55 3.02
2939 11348 4.100373 GAGATGCTCATAGGGATAGGGTT 58.900 47.826 0.00 0.00 0.00 4.11
2940 11349 3.567663 GGAGATGCTCATAGGGATAGGGT 60.568 52.174 0.00 0.00 31.08 4.34
2942 11351 2.692557 CGGAGATGCTCATAGGGATAGG 59.307 54.545 0.00 0.00 31.08 2.57
2944 11353 3.267031 TCTCGGAGATGCTCATAGGGATA 59.733 47.826 2.97 0.00 33.89 2.59
2946 11355 1.425448 TCTCGGAGATGCTCATAGGGA 59.575 52.381 2.97 0.00 33.89 4.20
2947 11356 1.818060 CTCTCGGAGATGCTCATAGGG 59.182 57.143 8.39 0.00 33.89 3.53
2948 11357 2.487762 GTCTCTCGGAGATGCTCATAGG 59.512 54.545 8.39 0.00 40.98 2.57
2949 11358 3.189080 CAGTCTCTCGGAGATGCTCATAG 59.811 52.174 8.39 0.00 40.98 2.23
2950 11359 3.145286 CAGTCTCTCGGAGATGCTCATA 58.855 50.000 8.39 0.00 40.98 2.15
2951 11360 1.955778 CAGTCTCTCGGAGATGCTCAT 59.044 52.381 8.39 0.00 40.98 2.90
2952 11361 1.065126 TCAGTCTCTCGGAGATGCTCA 60.065 52.381 8.39 0.00 40.98 4.26
2954 11363 1.679139 CTCAGTCTCTCGGAGATGCT 58.321 55.000 8.39 6.89 40.98 3.79
2955 11364 0.030638 GCTCAGTCTCTCGGAGATGC 59.969 60.000 8.39 4.64 40.98 3.91
2956 11365 0.667993 GGCTCAGTCTCTCGGAGATG 59.332 60.000 8.39 4.48 40.98 2.90
2957 11366 0.817634 CGGCTCAGTCTCTCGGAGAT 60.818 60.000 8.39 0.00 40.98 2.75
2960 11369 2.438614 CCGGCTCAGTCTCTCGGA 60.439 66.667 0.00 0.00 42.94 4.55
2961 11370 4.200283 GCCGGCTCAGTCTCTCGG 62.200 72.222 22.15 0.00 43.13 4.63
2963 11372 0.965439 ATATGCCGGCTCAGTCTCTC 59.035 55.000 29.70 0.00 0.00 3.20
2964 11373 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
2965 11374 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
2966 11375 1.346062 ATGATATGCCGGCTCAGTCT 58.654 50.000 29.70 5.43 0.00 3.24
2967 11376 2.175878 AATGATATGCCGGCTCAGTC 57.824 50.000 29.70 19.55 0.00 3.51
2968 11377 2.610479 CGTAATGATATGCCGGCTCAGT 60.610 50.000 29.70 23.58 0.00 3.41
2971 11380 2.363788 TCGTAATGATATGCCGGCTC 57.636 50.000 29.70 17.89 0.00 4.70
2972 11381 2.037251 ACTTCGTAATGATATGCCGGCT 59.963 45.455 29.70 15.76 0.00 5.52
2974 11383 3.649073 TGACTTCGTAATGATATGCCGG 58.351 45.455 0.00 0.00 0.00 6.13
2975 11384 6.093404 ACTATGACTTCGTAATGATATGCCG 58.907 40.000 0.00 0.00 0.00 5.69
2976 11385 9.025020 CATACTATGACTTCGTAATGATATGCC 57.975 37.037 0.00 0.00 0.00 4.40
2977 11386 8.535592 GCATACTATGACTTCGTAATGATATGC 58.464 37.037 0.00 0.00 34.95 3.14
2978 11387 8.737648 CGCATACTATGACTTCGTAATGATATG 58.262 37.037 0.00 0.00 0.00 1.78
2979 11388 7.432545 GCGCATACTATGACTTCGTAATGATAT 59.567 37.037 0.30 0.00 0.00 1.63
2980 11389 6.745907 GCGCATACTATGACTTCGTAATGATA 59.254 38.462 0.30 0.00 0.00 2.15
2981 11390 5.573282 GCGCATACTATGACTTCGTAATGAT 59.427 40.000 0.30 0.00 0.00 2.45
2983 11392 4.090066 GGCGCATACTATGACTTCGTAATG 59.910 45.833 10.83 0.00 0.00 1.90
2984 11393 4.022242 AGGCGCATACTATGACTTCGTAAT 60.022 41.667 10.83 0.00 0.00 1.89
2985 11394 3.317149 AGGCGCATACTATGACTTCGTAA 59.683 43.478 10.83 0.00 0.00 3.18
2986 11395 2.882761 AGGCGCATACTATGACTTCGTA 59.117 45.455 10.83 0.00 0.00 3.43
2988 11397 2.423926 AGGCGCATACTATGACTTCG 57.576 50.000 10.83 0.00 0.00 3.79
2989 11398 3.458189 ACAAGGCGCATACTATGACTTC 58.542 45.455 10.83 0.00 0.00 3.01
2990 11399 3.458189 GACAAGGCGCATACTATGACTT 58.542 45.455 10.83 0.00 0.00 3.01
2991 11400 2.543861 CGACAAGGCGCATACTATGACT 60.544 50.000 10.83 0.00 0.00 3.41
2992 11401 1.787155 CGACAAGGCGCATACTATGAC 59.213 52.381 10.83 0.00 0.00 3.06
2993 11402 1.407618 ACGACAAGGCGCATACTATGA 59.592 47.619 10.83 0.00 33.86 2.15
2994 11403 1.787155 GACGACAAGGCGCATACTATG 59.213 52.381 10.83 0.00 33.86 2.23
2995 11404 2.135664 GACGACAAGGCGCATACTAT 57.864 50.000 10.83 0.00 33.86 2.12
2996 11405 3.635433 GACGACAAGGCGCATACTA 57.365 52.632 10.83 0.00 33.86 1.82
2997 11406 4.496670 GACGACAAGGCGCATACT 57.503 55.556 10.83 0.00 33.86 2.12
3004 11413 3.562779 TTCCCGTCGACGACAAGGC 62.563 63.158 37.65 0.45 43.02 4.35
3005 11414 1.731969 GTTCCCGTCGACGACAAGG 60.732 63.158 37.65 28.37 43.02 3.61
3006 11415 2.078914 CGTTCCCGTCGACGACAAG 61.079 63.158 37.65 20.95 41.53 3.16
3007 11416 2.051076 CGTTCCCGTCGACGACAA 60.051 61.111 37.65 25.24 41.53 3.18
3008 11417 3.279116 ACGTTCCCGTCGACGACA 61.279 61.111 37.65 21.01 46.28 4.35
3020 11429 3.576648 CTTTCAGTGGTAGGAGACGTTC 58.423 50.000 0.00 0.00 0.00 3.95
3021 11430 2.288886 GCTTTCAGTGGTAGGAGACGTT 60.289 50.000 0.00 0.00 0.00 3.99
3022 11431 1.272769 GCTTTCAGTGGTAGGAGACGT 59.727 52.381 0.00 0.00 0.00 4.34
3023 11432 1.732732 CGCTTTCAGTGGTAGGAGACG 60.733 57.143 0.00 0.00 0.00 4.18
3024 11433 1.272769 ACGCTTTCAGTGGTAGGAGAC 59.727 52.381 0.00 0.00 0.00 3.36
3025 11434 1.629043 ACGCTTTCAGTGGTAGGAGA 58.371 50.000 0.00 0.00 0.00 3.71
3026 11435 3.707793 GATACGCTTTCAGTGGTAGGAG 58.292 50.000 0.00 0.00 0.00 3.69
3027 11436 2.098607 CGATACGCTTTCAGTGGTAGGA 59.901 50.000 0.00 0.00 0.00 2.94
3028 11437 2.460918 CGATACGCTTTCAGTGGTAGG 58.539 52.381 0.00 0.00 0.00 3.18
3042 11451 0.031585 TCAGGATTTCCGGCGATACG 59.968 55.000 9.30 0.00 42.08 3.06
3043 11452 2.234300 TTCAGGATTTCCGGCGATAC 57.766 50.000 9.30 0.00 42.08 2.24
3044 11453 2.992124 TTTCAGGATTTCCGGCGATA 57.008 45.000 9.30 0.00 42.08 2.92
3045 11454 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
3046 11455 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
3047 11456 5.682943 TTATTATTTCAGGATTTCCGGCG 57.317 39.130 0.00 0.00 42.08 6.46
3048 11457 8.573035 TGTATTTATTATTTCAGGATTTCCGGC 58.427 33.333 0.00 0.00 42.08 6.13
3068 11477 8.253113 CCTGGTGCTCTCATTATTTTTGTATTT 58.747 33.333 0.00 0.00 0.00 1.40
3069 11478 7.615365 TCCTGGTGCTCTCATTATTTTTGTATT 59.385 33.333 0.00 0.00 0.00 1.89
3070 11479 7.067494 GTCCTGGTGCTCTCATTATTTTTGTAT 59.933 37.037 0.00 0.00 0.00 2.29
3071 11480 6.374333 GTCCTGGTGCTCTCATTATTTTTGTA 59.626 38.462 0.00 0.00 0.00 2.41
3072 11481 5.183904 GTCCTGGTGCTCTCATTATTTTTGT 59.816 40.000 0.00 0.00 0.00 2.83
3073 11482 5.416952 AGTCCTGGTGCTCTCATTATTTTTG 59.583 40.000 0.00 0.00 0.00 2.44
3074 11483 5.574188 AGTCCTGGTGCTCTCATTATTTTT 58.426 37.500 0.00 0.00 0.00 1.94
3075 11484 5.184892 AGTCCTGGTGCTCTCATTATTTT 57.815 39.130 0.00 0.00 0.00 1.82
3076 11485 4.851639 AGTCCTGGTGCTCTCATTATTT 57.148 40.909 0.00 0.00 0.00 1.40
3077 11486 4.225942 TCAAGTCCTGGTGCTCTCATTATT 59.774 41.667 0.00 0.00 0.00 1.40
3078 11487 3.776969 TCAAGTCCTGGTGCTCTCATTAT 59.223 43.478 0.00 0.00 0.00 1.28
3079 11488 3.173151 TCAAGTCCTGGTGCTCTCATTA 58.827 45.455 0.00 0.00 0.00 1.90
3080 11489 1.980765 TCAAGTCCTGGTGCTCTCATT 59.019 47.619 0.00 0.00 0.00 2.57
3081 11490 1.649321 TCAAGTCCTGGTGCTCTCAT 58.351 50.000 0.00 0.00 0.00 2.90
3082 11491 1.070758 GTTCAAGTCCTGGTGCTCTCA 59.929 52.381 0.00 0.00 0.00 3.27
3083 11492 1.609320 GGTTCAAGTCCTGGTGCTCTC 60.609 57.143 0.00 0.00 0.00 3.20
3084 11493 0.398318 GGTTCAAGTCCTGGTGCTCT 59.602 55.000 0.00 0.00 0.00 4.09
3085 11494 0.606673 GGGTTCAAGTCCTGGTGCTC 60.607 60.000 0.00 0.00 0.00 4.26
3086 11495 1.062488 AGGGTTCAAGTCCTGGTGCT 61.062 55.000 0.00 0.00 31.11 4.40
3087 11496 0.890996 CAGGGTTCAAGTCCTGGTGC 60.891 60.000 0.00 0.00 44.99 5.01
3088 11497 3.329300 CAGGGTTCAAGTCCTGGTG 57.671 57.895 0.00 0.00 44.99 4.17
3092 11501 1.630878 GTCCATCAGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 38.11 3.85
3093 11502 1.630878 AGTCCATCAGGGTTCAAGTCC 59.369 52.381 0.00 0.00 38.11 3.85
3094 11503 2.616510 CCAGTCCATCAGGGTTCAAGTC 60.617 54.545 0.00 0.00 38.11 3.01
3095 11504 1.352352 CCAGTCCATCAGGGTTCAAGT 59.648 52.381 0.00 0.00 38.11 3.16
3096 11505 1.630369 TCCAGTCCATCAGGGTTCAAG 59.370 52.381 0.00 0.00 38.11 3.02
3097 11506 1.741028 TCCAGTCCATCAGGGTTCAA 58.259 50.000 0.00 0.00 38.11 2.69
3098 11507 1.741028 TTCCAGTCCATCAGGGTTCA 58.259 50.000 0.00 0.00 38.11 3.18
3099 11508 3.433740 GGTATTCCAGTCCATCAGGGTTC 60.434 52.174 0.00 0.00 38.11 3.62
3100 11509 2.509964 GGTATTCCAGTCCATCAGGGTT 59.490 50.000 0.00 0.00 38.11 4.11
3101 11510 2.127708 GGTATTCCAGTCCATCAGGGT 58.872 52.381 0.00 0.00 38.11 4.34
3102 11511 2.126882 TGGTATTCCAGTCCATCAGGG 58.873 52.381 0.00 0.00 39.03 4.45
3103 11512 2.774234 AGTGGTATTCCAGTCCATCAGG 59.226 50.000 0.00 0.00 43.23 3.86
3104 11513 5.541868 AGATAGTGGTATTCCAGTCCATCAG 59.458 44.000 1.35 0.00 45.25 2.90
3105 11514 5.467738 AGATAGTGGTATTCCAGTCCATCA 58.532 41.667 1.35 0.00 45.25 3.07
3106 11515 5.777732 AGAGATAGTGGTATTCCAGTCCATC 59.222 44.000 1.35 1.89 45.25 3.51
3107 11516 5.721225 AGAGATAGTGGTATTCCAGTCCAT 58.279 41.667 1.35 0.00 45.25 3.41
3108 11517 5.103473 AGAGAGATAGTGGTATTCCAGTCCA 60.103 44.000 1.35 0.00 45.25 4.02
3109 11518 5.390387 AGAGAGATAGTGGTATTCCAGTCC 58.610 45.833 1.35 0.00 45.25 3.85
3110 11519 7.040271 GGTTAGAGAGATAGTGGTATTCCAGTC 60.040 44.444 1.35 0.00 45.25 3.51
3112 11521 6.778069 TGGTTAGAGAGATAGTGGTATTCCAG 59.222 42.308 0.00 0.00 45.24 3.86
3113 11522 6.679542 TGGTTAGAGAGATAGTGGTATTCCA 58.320 40.000 0.00 0.00 42.05 3.53
3114 11523 7.093684 GGATGGTTAGAGAGATAGTGGTATTCC 60.094 44.444 0.00 0.00 0.00 3.01
3115 11524 7.451877 TGGATGGTTAGAGAGATAGTGGTATTC 59.548 40.741 0.00 0.00 0.00 1.75
3116 11525 7.306013 TGGATGGTTAGAGAGATAGTGGTATT 58.694 38.462 0.00 0.00 0.00 1.89
3117 11526 6.864421 TGGATGGTTAGAGAGATAGTGGTAT 58.136 40.000 0.00 0.00 0.00 2.73
3118 11527 6.275692 TGGATGGTTAGAGAGATAGTGGTA 57.724 41.667 0.00 0.00 0.00 3.25
3119 11528 5.144159 TGGATGGTTAGAGAGATAGTGGT 57.856 43.478 0.00 0.00 0.00 4.16
3120 11529 5.510520 GCTTGGATGGTTAGAGAGATAGTGG 60.511 48.000 0.00 0.00 0.00 4.00
3121 11530 5.069648 TGCTTGGATGGTTAGAGAGATAGTG 59.930 44.000 0.00 0.00 0.00 2.74
3122 11531 5.069781 GTGCTTGGATGGTTAGAGAGATAGT 59.930 44.000 0.00 0.00 0.00 2.12
3123 11532 5.069648 TGTGCTTGGATGGTTAGAGAGATAG 59.930 44.000 0.00 0.00 0.00 2.08
3124 11533 4.962362 TGTGCTTGGATGGTTAGAGAGATA 59.038 41.667 0.00 0.00 0.00 1.98
3125 11534 3.776969 TGTGCTTGGATGGTTAGAGAGAT 59.223 43.478 0.00 0.00 0.00 2.75
3126 11535 3.173151 TGTGCTTGGATGGTTAGAGAGA 58.827 45.455 0.00 0.00 0.00 3.10
3127 11536 3.616956 TGTGCTTGGATGGTTAGAGAG 57.383 47.619 0.00 0.00 0.00 3.20
3128 11537 3.264193 ACATGTGCTTGGATGGTTAGAGA 59.736 43.478 0.00 0.00 0.00 3.10
3129 11538 3.614092 ACATGTGCTTGGATGGTTAGAG 58.386 45.455 0.00 0.00 0.00 2.43
3130 11539 3.719268 ACATGTGCTTGGATGGTTAGA 57.281 42.857 0.00 0.00 0.00 2.10
3131 11540 3.119388 CCAACATGTGCTTGGATGGTTAG 60.119 47.826 9.11 0.00 40.76 2.34
3132 11541 2.824936 CCAACATGTGCTTGGATGGTTA 59.175 45.455 9.11 0.00 40.76 2.85
3133 11542 1.619827 CCAACATGTGCTTGGATGGTT 59.380 47.619 9.11 0.00 40.76 3.67
3134 11543 1.259609 CCAACATGTGCTTGGATGGT 58.740 50.000 9.11 0.00 40.76 3.55
3135 11544 1.259609 ACCAACATGTGCTTGGATGG 58.740 50.000 19.66 14.17 40.76 3.51
3136 11545 2.669113 CGAACCAACATGTGCTTGGATG 60.669 50.000 19.66 3.47 40.76 3.51
3137 11546 1.541147 CGAACCAACATGTGCTTGGAT 59.459 47.619 19.66 9.48 40.76 3.41
3138 11547 0.950836 CGAACCAACATGTGCTTGGA 59.049 50.000 19.66 0.00 40.76 3.53
3139 11548 0.667993 ACGAACCAACATGTGCTTGG 59.332 50.000 12.60 12.60 43.49 3.61
3140 11549 3.617540 TTACGAACCAACATGTGCTTG 57.382 42.857 0.00 0.00 0.00 4.01
3141 11550 4.640789 TTTTACGAACCAACATGTGCTT 57.359 36.364 0.00 0.00 0.00 3.91
3142 11551 4.846779 ATTTTACGAACCAACATGTGCT 57.153 36.364 0.00 0.00 0.00 4.40
3143 11552 5.695818 ACTATTTTACGAACCAACATGTGC 58.304 37.500 0.00 0.00 0.00 4.57
3144 11553 8.025243 AGTACTATTTTACGAACCAACATGTG 57.975 34.615 0.00 0.00 0.00 3.21
3145 11554 9.880157 ATAGTACTATTTTACGAACCAACATGT 57.120 29.630 9.71 0.00 0.00 3.21
3186 11595 2.599677 ACCTCTCCTCGTCACTCTTTT 58.400 47.619 0.00 0.00 0.00 2.27
3227 11638 4.237724 GCCTCAAATTTCTGTGTTTAGGC 58.762 43.478 0.00 0.00 40.11 3.93
3259 11674 0.952497 ATCGATGTGGATGCGATGCC 60.952 55.000 0.00 0.00 42.48 4.40
3283 11698 5.790593 TCGAGCAGGAAATTAGTTGTAACT 58.209 37.500 2.51 2.51 42.91 2.24
3285 11700 6.403049 TGATCGAGCAGGAAATTAGTTGTAA 58.597 36.000 0.00 0.00 0.00 2.41
3364 12018 2.287009 GCAACACAACTTTCTCCGGAAG 60.287 50.000 5.23 2.16 32.61 3.46
3506 12169 0.725686 CTGAGATGGTTTGCTGCGAG 59.274 55.000 0.00 0.00 0.00 5.03
3541 12208 4.051167 TGGTGGAGGCCATGGCTG 62.051 66.667 34.70 0.00 38.98 4.85
3696 12423 4.722700 GGGCACAGTCGGCATGGT 62.723 66.667 0.00 0.00 0.00 3.55
3698 12425 3.434319 GTGGGCACAGTCGGCATG 61.434 66.667 0.00 0.00 0.00 4.06
3796 12523 0.036388 CATGGTCACCTTAGGCACGT 60.036 55.000 0.00 0.00 0.00 4.49
3884 12611 3.567797 GGCGGCAGCGTCATCTTC 61.568 66.667 3.07 0.00 46.35 2.87
3968 12695 2.246841 CACACATCACCACGTGCAT 58.753 52.632 10.91 0.00 36.57 3.96
3993 12725 2.178521 GAGCGTGTGACCGTCGAT 59.821 61.111 0.00 0.00 0.00 3.59
4317 13073 2.743636 ACTGTAGTACGCTTGCACAT 57.256 45.000 0.00 0.00 0.00 3.21
4379 13135 6.484977 CCTCCACTATAATTTTGCTTCTCCTC 59.515 42.308 0.00 0.00 0.00 3.71
4396 13152 6.183361 TGTTTTTATTGTGTCCTCCTCCACTA 60.183 38.462 0.00 0.00 32.76 2.74
4397 13153 4.993705 TTTTATTGTGTCCTCCTCCACT 57.006 40.909 0.00 0.00 32.76 4.00
4399 13155 5.055265 TGTTTTTATTGTGTCCTCCTCCA 57.945 39.130 0.00 0.00 0.00 3.86
4400 13156 6.399639 TTTGTTTTTATTGTGTCCTCCTCC 57.600 37.500 0.00 0.00 0.00 4.30
4402 13158 6.155393 TGGTTTTGTTTTTATTGTGTCCTCCT 59.845 34.615 0.00 0.00 0.00 3.69
4403 13159 6.256975 GTGGTTTTGTTTTTATTGTGTCCTCC 59.743 38.462 0.00 0.00 0.00 4.30
4405 13161 5.808030 CGTGGTTTTGTTTTTATTGTGTCCT 59.192 36.000 0.00 0.00 0.00 3.85
4406 13162 5.805994 TCGTGGTTTTGTTTTTATTGTGTCC 59.194 36.000 0.00 0.00 0.00 4.02
4426 13182 9.605955 TTGTTGTTATTTTATTCAGATGTCGTG 57.394 29.630 0.00 0.00 0.00 4.35
4428 13184 9.061610 GGTTGTTGTTATTTTATTCAGATGTCG 57.938 33.333 0.00 0.00 0.00 4.35
4429 13185 9.906660 TGGTTGTTGTTATTTTATTCAGATGTC 57.093 29.630 0.00 0.00 0.00 3.06
4430 13186 9.691362 GTGGTTGTTGTTATTTTATTCAGATGT 57.309 29.630 0.00 0.00 0.00 3.06
4446 13202 9.685828 GTTGTTGTTTATATATGTGGTTGTTGT 57.314 29.630 0.00 0.00 0.00 3.32
4447 13203 9.134734 GGTTGTTGTTTATATATGTGGTTGTTG 57.865 33.333 0.00 0.00 0.00 3.33
4448 13204 8.308207 GGGTTGTTGTTTATATATGTGGTTGTT 58.692 33.333 0.00 0.00 0.00 2.83
4449 13205 7.093684 GGGGTTGTTGTTTATATATGTGGTTGT 60.094 37.037 0.00 0.00 0.00 3.32
4450 13206 7.093727 TGGGGTTGTTGTTTATATATGTGGTTG 60.094 37.037 0.00 0.00 0.00 3.77
4451 13207 6.954684 TGGGGTTGTTGTTTATATATGTGGTT 59.045 34.615 0.00 0.00 0.00 3.67
4452 13208 6.494952 TGGGGTTGTTGTTTATATATGTGGT 58.505 36.000 0.00 0.00 0.00 4.16
4453 13209 7.595819 ATGGGGTTGTTGTTTATATATGTGG 57.404 36.000 0.00 0.00 0.00 4.17
4462 13218 7.368833 CGTGTATTTTATGGGGTTGTTGTTTA 58.631 34.615 0.00 0.00 0.00 2.01
4463 13219 6.217294 CGTGTATTTTATGGGGTTGTTGTTT 58.783 36.000 0.00 0.00 0.00 2.83
4464 13220 5.279056 CCGTGTATTTTATGGGGTTGTTGTT 60.279 40.000 0.00 0.00 0.00 2.83
4465 13221 4.218852 CCGTGTATTTTATGGGGTTGTTGT 59.781 41.667 0.00 0.00 0.00 3.32
4466 13222 4.739195 CCGTGTATTTTATGGGGTTGTTG 58.261 43.478 0.00 0.00 0.00 3.33
4467 13223 3.193903 GCCGTGTATTTTATGGGGTTGTT 59.806 43.478 0.00 0.00 0.00 2.83
4468 13224 2.756207 GCCGTGTATTTTATGGGGTTGT 59.244 45.455 0.00 0.00 0.00 3.32
4469 13225 2.100087 GGCCGTGTATTTTATGGGGTTG 59.900 50.000 0.00 0.00 0.00 3.77
4470 13226 2.380941 GGCCGTGTATTTTATGGGGTT 58.619 47.619 0.00 0.00 0.00 4.11
4471 13227 1.410507 GGGCCGTGTATTTTATGGGGT 60.411 52.381 0.00 0.00 0.00 4.95
4473 13229 2.060050 TGGGCCGTGTATTTTATGGG 57.940 50.000 0.00 0.00 0.00 4.00
4474 13230 2.755655 TGTTGGGCCGTGTATTTTATGG 59.244 45.455 0.00 0.00 0.00 2.74
4491 13250 7.425606 GGCTACCTCACCATTTTATATTGTTG 58.574 38.462 0.00 0.00 0.00 3.33
4502 13261 1.372501 AAGTGGGCTACCTCACCATT 58.627 50.000 0.00 0.00 36.54 3.16
4511 13270 6.150474 TGAAATTAGCTTTGTAAGTGGGCTAC 59.850 38.462 0.00 0.00 35.61 3.58
4514 13273 5.385509 TGAAATTAGCTTTGTAAGTGGGC 57.614 39.130 0.00 0.00 0.00 5.36
4521 13280 8.514594 CCTGATTGTCTTGAAATTAGCTTTGTA 58.485 33.333 0.00 0.00 0.00 2.41
4530 13289 4.827284 ACGTTCCCTGATTGTCTTGAAATT 59.173 37.500 0.00 0.00 0.00 1.82
4537 13296 3.576982 TGTTCTACGTTCCCTGATTGTCT 59.423 43.478 0.00 0.00 0.00 3.41
4538 13297 3.678548 GTGTTCTACGTTCCCTGATTGTC 59.321 47.826 0.00 0.00 0.00 3.18
4565 13324 4.206609 GTGATATCTTTCGGTTGCGTAGTC 59.793 45.833 3.98 0.00 0.00 2.59
4577 13336 7.551585 TCTCAGGTCTTTCTGTGATATCTTTC 58.448 38.462 3.98 0.00 33.86 2.62
4600 13359 2.480845 GGCGTAGTGTGACTGTTTTCT 58.519 47.619 0.00 0.00 0.00 2.52
4604 13363 1.544691 CTAGGGCGTAGTGTGACTGTT 59.455 52.381 6.07 0.00 0.00 3.16
4623 13382 5.010314 TGTTGTCGTGGAGTTTAGATGTACT 59.990 40.000 0.00 0.00 0.00 2.73
4624 13383 5.118203 GTGTTGTCGTGGAGTTTAGATGTAC 59.882 44.000 0.00 0.00 0.00 2.90
4626 13385 4.056050 GTGTTGTCGTGGAGTTTAGATGT 58.944 43.478 0.00 0.00 0.00 3.06
4627 13386 3.432252 GGTGTTGTCGTGGAGTTTAGATG 59.568 47.826 0.00 0.00 0.00 2.90
4628 13387 3.556423 GGGTGTTGTCGTGGAGTTTAGAT 60.556 47.826 0.00 0.00 0.00 1.98
4680 14950 6.323996 CCATAATGACTACTCTAACAGGTGGA 59.676 42.308 0.00 0.00 0.00 4.02
4681 14951 6.098409 ACCATAATGACTACTCTAACAGGTGG 59.902 42.308 0.00 0.00 0.00 4.61
4762 15142 6.866770 GTGCGGCATACAAGAGTATATAAGAA 59.133 38.462 5.72 0.00 38.88 2.52
5177 19542 3.679980 CGAGATCGTCTTTCAACCATTGT 59.320 43.478 0.00 0.00 34.11 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.