Multiple sequence alignment - TraesCS5D01G427500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G427500 chr5D 100.000 2480 0 0 1 2480 485604582 485607061 0.000000e+00 4580.0
1 TraesCS5D01G427500 chr5D 91.667 1116 57 18 590 1687 485928239 485929336 0.000000e+00 1513.0
2 TraesCS5D01G427500 chr5D 94.244 747 30 5 1205 1949 485768806 485769541 0.000000e+00 1129.0
3 TraesCS5D01G427500 chr5D 87.516 761 68 19 625 1380 485768285 485769023 0.000000e+00 854.0
4 TraesCS5D01G427500 chr5D 90.725 593 41 6 1 591 485767470 485768050 0.000000e+00 778.0
5 TraesCS5D01G427500 chr5D 89.346 535 49 6 2 533 485919750 485920279 0.000000e+00 665.0
6 TraesCS5D01G427500 chr5D 98.198 333 6 0 2148 2480 24027930 24027598 1.280000e-162 582.0
7 TraesCS5D01G427500 chr5D 85.102 537 61 13 968 1486 486031086 486031621 4.700000e-147 531.0
8 TraesCS5D01G427500 chr5D 85.602 507 63 5 988 1486 486015768 486016272 7.860000e-145 523.0
9 TraesCS5D01G427500 chr5B 89.428 1731 121 28 1 1702 596981412 596983109 0.000000e+00 2126.0
10 TraesCS5D01G427500 chr5A 89.549 1684 104 30 17 1667 606699102 606700746 0.000000e+00 2069.0
11 TraesCS5D01G427500 chr5A 90.278 864 52 16 854 1702 606769039 606769885 0.000000e+00 1101.0
12 TraesCS5D01G427500 chr5A 87.563 796 53 18 33 807 606768274 606769044 0.000000e+00 880.0
13 TraesCS5D01G427500 chr5A 87.500 792 53 20 9 797 606560423 606561171 0.000000e+00 872.0
14 TraesCS5D01G427500 chr5A 88.414 561 44 12 1147 1702 606579143 606579687 0.000000e+00 656.0
15 TraesCS5D01G427500 chr5A 83.308 659 81 22 894 1532 606786779 606787428 4.600000e-162 580.0
16 TraesCS5D01G427500 chr5A 91.808 354 20 3 796 1140 606561409 606561762 3.710000e-133 484.0
17 TraesCS5D01G427500 chr7D 97.904 334 6 1 2148 2480 511068840 511069173 5.950000e-161 577.0
18 TraesCS5D01G427500 chr7D 97.297 333 8 1 2148 2480 557755586 557755917 4.630000e-157 564.0
19 TraesCS5D01G427500 chr7D 96.997 333 10 0 2148 2480 205949077 205948745 5.990000e-156 560.0
20 TraesCS5D01G427500 chr3D 97.898 333 7 0 2148 2480 599328637 599328305 5.950000e-161 577.0
21 TraesCS5D01G427500 chr6D 97.598 333 8 0 2148 2480 53763983 53763651 2.770000e-159 571.0
22 TraesCS5D01G427500 chr6D 97.289 332 9 0 2149 2480 14595180 14595511 4.630000e-157 564.0
23 TraesCS5D01G427500 chr2D 97.297 333 9 0 2148 2480 635868231 635867899 1.290000e-157 566.0
24 TraesCS5D01G427500 chrUn 97.015 335 9 1 2146 2480 31727820 31727487 1.670000e-156 562.0
25 TraesCS5D01G427500 chr7B 94.872 39 2 0 2005 2043 709816216 709816254 7.410000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G427500 chr5D 485604582 485607061 2479 False 4580.000000 4580 100.000000 1 2480 1 chr5D.!!$F1 2479
1 TraesCS5D01G427500 chr5D 485928239 485929336 1097 False 1513.000000 1513 91.667000 590 1687 1 chr5D.!!$F3 1097
2 TraesCS5D01G427500 chr5D 485767470 485769541 2071 False 920.333333 1129 90.828333 1 1949 3 chr5D.!!$F6 1948
3 TraesCS5D01G427500 chr5D 485919750 485920279 529 False 665.000000 665 89.346000 2 533 1 chr5D.!!$F2 531
4 TraesCS5D01G427500 chr5D 486031086 486031621 535 False 531.000000 531 85.102000 968 1486 1 chr5D.!!$F5 518
5 TraesCS5D01G427500 chr5D 486015768 486016272 504 False 523.000000 523 85.602000 988 1486 1 chr5D.!!$F4 498
6 TraesCS5D01G427500 chr5B 596981412 596983109 1697 False 2126.000000 2126 89.428000 1 1702 1 chr5B.!!$F1 1701
7 TraesCS5D01G427500 chr5A 606699102 606700746 1644 False 2069.000000 2069 89.549000 17 1667 1 chr5A.!!$F2 1650
8 TraesCS5D01G427500 chr5A 606768274 606769885 1611 False 990.500000 1101 88.920500 33 1702 2 chr5A.!!$F5 1669
9 TraesCS5D01G427500 chr5A 606560423 606561762 1339 False 678.000000 872 89.654000 9 1140 2 chr5A.!!$F4 1131
10 TraesCS5D01G427500 chr5A 606579143 606579687 544 False 656.000000 656 88.414000 1147 1702 1 chr5A.!!$F1 555
11 TraesCS5D01G427500 chr5A 606786779 606787428 649 False 580.000000 580 83.308000 894 1532 1 chr5A.!!$F3 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 439 0.036388 TCCAAGGCACCTGTCGATTC 60.036 55.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2129 2637 0.033504 AAGGGCGTAGTGTGACTGTG 59.966 55.0 0.0 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 91 0.597568 ACATCATGGCGGTGTGTTTG 59.402 50.000 0.00 0.00 0.00 2.93
129 131 3.435846 TGCCCAAGCATGTTTCTGA 57.564 47.368 0.00 0.00 46.52 3.27
139 141 1.475280 CATGTTTCTGACAGGGCCATG 59.525 52.381 17.55 17.55 42.62 3.66
153 155 1.134946 GGCCATGCACCAAATACTCAC 59.865 52.381 0.00 0.00 0.00 3.51
274 277 9.561069 AAGTTCACATTACAACTGACTTAAGAT 57.439 29.630 10.09 0.00 33.01 2.40
279 282 8.017373 CACATTACAACTGACTTAAGATGTTGG 58.983 37.037 26.46 18.05 41.32 3.77
305 308 7.056635 ACGGATGAACATGAAGGAATAAGAAT 58.943 34.615 0.00 0.00 0.00 2.40
356 361 4.184629 GTCATCTCTACATCAAAACGCCT 58.815 43.478 0.00 0.00 0.00 5.52
359 364 6.480320 GTCATCTCTACATCAAAACGCCTAAT 59.520 38.462 0.00 0.00 0.00 1.73
412 418 1.165270 AAAAGGCGCGTGCTAGAAAT 58.835 45.000 21.89 0.00 42.25 2.17
433 439 0.036388 TCCAAGGCACCTGTCGATTC 60.036 55.000 0.00 0.00 0.00 2.52
436 442 0.670546 AAGGCACCTGTCGATTCACG 60.671 55.000 0.00 0.00 44.09 4.35
453 459 4.481368 TCACGGAGCACCAAGTAATTAT 57.519 40.909 0.00 0.00 35.59 1.28
454 460 5.601583 TCACGGAGCACCAAGTAATTATA 57.398 39.130 0.00 0.00 35.59 0.98
455 461 6.169557 TCACGGAGCACCAAGTAATTATAT 57.830 37.500 0.00 0.00 35.59 0.86
541 550 9.468532 GGATTGACTATTCAAAATCAATTAGGC 57.531 33.333 0.00 0.00 45.01 3.93
544 553 8.579850 TGACTATTCAAAATCAATTAGGCTGT 57.420 30.769 0.00 0.00 0.00 4.40
545 554 8.461222 TGACTATTCAAAATCAATTAGGCTGTG 58.539 33.333 0.00 0.00 0.00 3.66
546 555 7.775120 ACTATTCAAAATCAATTAGGCTGTGG 58.225 34.615 0.00 0.00 0.00 4.17
547 556 4.454728 TCAAAATCAATTAGGCTGTGGC 57.545 40.909 0.00 0.00 37.82 5.01
548 557 3.831333 TCAAAATCAATTAGGCTGTGGCA 59.169 39.130 0.00 0.00 40.87 4.92
573 582 4.202567 TGTTGCCACTCCCTTTCTTATTCT 60.203 41.667 0.00 0.00 0.00 2.40
586 595 8.971073 CCCTTTCTTATTCTATTTCACATTGGT 58.029 33.333 0.00 0.00 0.00 3.67
759 986 3.063997 CCGCTACAACTAATTTCCTGCTG 59.936 47.826 0.00 0.00 0.00 4.41
765 992 4.702131 ACAACTAATTTCCTGCTGGATCAC 59.298 41.667 13.72 0.00 42.81 3.06
790 1017 8.131100 ACATAAACATTTTGTCACTTCTGACTG 58.869 33.333 2.72 0.00 46.31 3.51
876 1342 4.220602 GTCTGGCCAACAACCAATCTAATT 59.779 41.667 7.01 0.00 36.56 1.40
880 1350 4.953579 GGCCAACAACCAATCTAATTAGGA 59.046 41.667 12.54 0.35 0.00 2.94
881 1351 5.420739 GGCCAACAACCAATCTAATTAGGAA 59.579 40.000 12.54 0.00 0.00 3.36
885 1355 8.748412 CCAACAACCAATCTAATTAGGAAATCA 58.252 33.333 12.54 0.00 0.00 2.57
900 1376 5.874093 AGGAAATCAATCACCTGGCTATAG 58.126 41.667 0.00 0.00 0.00 1.31
1141 1624 2.935481 CTGTCCCTGGCCTCCCAA 60.935 66.667 3.32 0.00 41.58 4.12
1269 1770 4.738998 CCCATGCCCGCTGTTCCA 62.739 66.667 0.00 0.00 0.00 3.53
1302 1803 1.153086 GACGATGCCTCCAATGCCT 60.153 57.895 0.00 0.00 0.00 4.75
1323 1824 0.742505 CCATCGTCGTGCCTAAGGTA 59.257 55.000 0.00 0.00 0.00 3.08
1326 1827 0.168788 TCGTCGTGCCTAAGGTAACG 59.831 55.000 0.00 0.00 46.39 3.18
1335 1836 1.474498 CCTAAGGTAACGATGGCACCC 60.474 57.143 0.00 0.00 46.39 4.61
1552 2058 1.278985 CCAGTGGCTACATCACTTGGA 59.721 52.381 2.02 0.00 42.87 3.53
1553 2059 2.350522 CAGTGGCTACATCACTTGGAC 58.649 52.381 2.02 0.00 42.87 4.02
1554 2060 2.027745 CAGTGGCTACATCACTTGGACT 60.028 50.000 2.02 0.00 42.87 3.85
1555 2061 2.639839 AGTGGCTACATCACTTGGACTT 59.360 45.455 2.02 0.00 42.17 3.01
1556 2062 2.744202 GTGGCTACATCACTTGGACTTG 59.256 50.000 0.00 0.00 32.78 3.16
1557 2063 2.290260 TGGCTACATCACTTGGACTTGG 60.290 50.000 0.00 0.00 0.00 3.61
1562 2068 1.270550 CATCACTTGGACTTGGTTGCC 59.729 52.381 0.00 0.00 0.00 4.52
1583 2089 4.743955 GCCCATGTGAAGTAGGAGTATTCC 60.744 50.000 0.00 0.00 44.39 3.01
1687 2195 4.969816 AGCATATACGCGGCATTTTAATC 58.030 39.130 12.47 0.00 36.85 1.75
1692 2200 8.332464 GCATATACGCGGCATTTTAATCTATTA 58.668 33.333 12.47 0.00 0.00 0.98
1754 2262 1.810151 GTCCATGCGTTGGTACACAAT 59.190 47.619 5.49 0.00 46.52 2.71
1819 2327 3.207265 TGTTGCCTCAAGCTCTTGTAA 57.793 42.857 9.20 0.25 44.23 2.41
1902 2410 0.461961 ATGAGCGAACCCTGTCTAGC 59.538 55.000 0.00 0.00 0.00 3.42
1919 2427 5.877012 TGTCTAGCAGGAGAAGCAAAATTAG 59.123 40.000 0.00 0.00 0.00 1.73
1920 2428 5.877564 GTCTAGCAGGAGAAGCAAAATTAGT 59.122 40.000 0.00 0.00 0.00 2.24
1922 2430 3.760684 AGCAGGAGAAGCAAAATTAGTGG 59.239 43.478 0.00 0.00 0.00 4.00
1923 2431 3.758554 GCAGGAGAAGCAAAATTAGTGGA 59.241 43.478 0.00 0.00 0.00 4.02
1925 2433 4.397417 CAGGAGAAGCAAAATTAGTGGAGG 59.603 45.833 0.00 0.00 0.00 4.30
1926 2434 4.289672 AGGAGAAGCAAAATTAGTGGAGGA 59.710 41.667 0.00 0.00 0.00 3.71
1928 2436 4.593956 AGAAGCAAAATTAGTGGAGGAGG 58.406 43.478 0.00 0.00 0.00 4.30
1929 2437 4.289672 AGAAGCAAAATTAGTGGAGGAGGA 59.710 41.667 0.00 0.00 0.00 3.71
1949 2457 7.123547 AGGAGGAGACACAATAAAAACAAAACA 59.876 33.333 0.00 0.00 0.00 2.83
1950 2458 7.762159 GGAGGAGACACAATAAAAACAAAACAA 59.238 33.333 0.00 0.00 0.00 2.83
1951 2459 8.702163 AGGAGACACAATAAAAACAAAACAAG 57.298 30.769 0.00 0.00 0.00 3.16
1952 2460 8.311109 AGGAGACACAATAAAAACAAAACAAGT 58.689 29.630 0.00 0.00 0.00 3.16
1953 2461 8.379902 GGAGACACAATAAAAACAAAACAAGTG 58.620 33.333 0.00 0.00 0.00 3.16
1954 2462 7.738345 AGACACAATAAAAACAAAACAAGTGC 58.262 30.769 0.00 0.00 0.00 4.40
1955 2463 6.529696 ACACAATAAAAACAAAACAAGTGCG 58.470 32.000 0.00 0.00 0.00 5.34
1956 2464 6.146347 ACACAATAAAAACAAAACAAGTGCGT 59.854 30.769 0.00 0.00 0.00 5.24
1957 2465 6.461075 CACAATAAAAACAAAACAAGTGCGTG 59.539 34.615 0.00 0.00 0.00 5.34
1958 2466 3.447752 AAAAACAAAACAAGTGCGTGC 57.552 38.095 0.00 0.00 0.00 5.34
1959 2467 0.988439 AAACAAAACAAGTGCGTGCG 59.012 45.000 0.00 0.00 0.00 5.34
1960 2468 1.409982 AACAAAACAAGTGCGTGCGC 61.410 50.000 9.85 9.85 42.35 6.09
1961 2469 2.650602 AAAACAAGTGCGTGCGCG 60.651 55.556 16.86 16.86 45.51 6.86
1972 2480 4.312231 GTGCGCGCATGTGTGTGT 62.312 61.111 38.62 0.00 38.13 3.72
1973 2481 3.581156 TGCGCGCATGTGTGTGTT 61.581 55.556 33.09 0.00 38.13 3.32
1974 2482 3.092841 GCGCGCATGTGTGTGTTG 61.093 61.111 29.10 0.00 38.13 3.33
1975 2483 2.327592 CGCGCATGTGTGTGTTGT 59.672 55.556 8.75 0.00 38.13 3.32
1976 2484 1.567050 CGCGCATGTGTGTGTTGTA 59.433 52.632 8.75 0.00 38.13 2.41
1977 2485 0.165727 CGCGCATGTGTGTGTTGTAT 59.834 50.000 8.75 0.00 38.13 2.29
1978 2486 1.399599 CGCGCATGTGTGTGTTGTATT 60.400 47.619 8.75 0.00 38.13 1.89
1979 2487 2.241722 GCGCATGTGTGTGTTGTATTC 58.758 47.619 0.30 0.00 38.13 1.75
1980 2488 2.350293 GCGCATGTGTGTGTTGTATTCA 60.350 45.455 0.30 0.00 38.13 2.57
1981 2489 3.851471 GCGCATGTGTGTGTTGTATTCAA 60.851 43.478 0.30 0.00 38.13 2.69
1982 2490 4.286101 CGCATGTGTGTGTTGTATTCAAA 58.714 39.130 0.00 0.00 35.20 2.69
1983 2491 4.146271 CGCATGTGTGTGTTGTATTCAAAC 59.854 41.667 0.00 0.00 35.20 2.93
1984 2492 5.039984 GCATGTGTGTGTTGTATTCAAACA 58.960 37.500 0.00 0.00 35.20 2.83
1985 2493 5.173673 GCATGTGTGTGTTGTATTCAAACAG 59.826 40.000 0.00 0.00 35.20 3.16
1986 2494 5.242069 TGTGTGTGTTGTATTCAAACAGG 57.758 39.130 0.00 0.00 35.20 4.00
1987 2495 4.041723 GTGTGTGTTGTATTCAAACAGGC 58.958 43.478 0.00 0.00 35.20 4.85
1988 2496 3.951037 TGTGTGTTGTATTCAAACAGGCT 59.049 39.130 0.00 0.00 35.20 4.58
1989 2497 4.400884 TGTGTGTTGTATTCAAACAGGCTT 59.599 37.500 0.00 0.00 35.20 4.35
1990 2498 5.105554 TGTGTGTTGTATTCAAACAGGCTTT 60.106 36.000 0.00 0.00 35.20 3.51
1991 2499 5.458779 GTGTGTTGTATTCAAACAGGCTTTC 59.541 40.000 0.00 0.00 35.20 2.62
1992 2500 4.675114 GTGTTGTATTCAAACAGGCTTTCG 59.325 41.667 0.00 0.00 35.20 3.46
1993 2501 3.552604 TGTATTCAAACAGGCTTTCGC 57.447 42.857 0.00 0.00 0.00 4.70
1994 2502 5.372374 GTTGTATTCAAACAGGCTTTCGCC 61.372 45.833 0.00 0.00 44.96 5.54
2007 2515 4.428615 GCTTTCGCCCTGTTACATAAAA 57.571 40.909 0.00 0.00 0.00 1.52
2008 2516 4.993905 GCTTTCGCCCTGTTACATAAAAT 58.006 39.130 0.00 0.00 0.00 1.82
2009 2517 6.126568 GCTTTCGCCCTGTTACATAAAATA 57.873 37.500 0.00 0.00 0.00 1.40
2010 2518 5.969435 GCTTTCGCCCTGTTACATAAAATAC 59.031 40.000 0.00 0.00 0.00 1.89
2011 2519 6.403855 GCTTTCGCCCTGTTACATAAAATACA 60.404 38.462 0.00 0.00 0.00 2.29
2012 2520 6.425577 TTCGCCCTGTTACATAAAATACAC 57.574 37.500 0.00 0.00 0.00 2.90
2013 2521 4.567558 TCGCCCTGTTACATAAAATACACG 59.432 41.667 0.00 0.00 0.00 4.49
2014 2522 4.260456 CGCCCTGTTACATAAAATACACGG 60.260 45.833 0.00 0.00 0.00 4.94
2015 2523 4.496840 GCCCTGTTACATAAAATACACGGC 60.497 45.833 0.00 0.00 36.21 5.68
2016 2524 4.035909 CCCTGTTACATAAAATACACGGCC 59.964 45.833 0.00 0.00 0.00 6.13
2017 2525 4.260456 CCTGTTACATAAAATACACGGCCG 60.260 45.833 26.86 26.86 0.00 6.13
2018 2526 4.502016 TGTTACATAAAATACACGGCCGA 58.498 39.130 35.90 10.61 0.00 5.54
2019 2527 4.934001 TGTTACATAAAATACACGGCCGAA 59.066 37.500 35.90 17.45 0.00 4.30
2020 2528 5.163874 TGTTACATAAAATACACGGCCGAAC 60.164 40.000 35.90 20.38 0.00 3.95
2021 2529 3.336468 ACATAAAATACACGGCCGAACA 58.664 40.909 35.90 16.27 0.00 3.18
2022 2530 3.752222 ACATAAAATACACGGCCGAACAA 59.248 39.130 35.90 14.60 0.00 2.83
2023 2531 4.396790 ACATAAAATACACGGCCGAACAAT 59.603 37.500 35.90 16.34 0.00 2.71
2024 2532 5.585445 ACATAAAATACACGGCCGAACAATA 59.415 36.000 35.90 15.96 0.00 1.90
2025 2533 6.261381 ACATAAAATACACGGCCGAACAATAT 59.739 34.615 35.90 17.49 0.00 1.28
2026 2534 7.441760 ACATAAAATACACGGCCGAACAATATA 59.558 33.333 35.90 16.88 0.00 0.86
2027 2535 6.680874 AAAATACACGGCCGAACAATATAA 57.319 33.333 35.90 6.41 0.00 0.98
2028 2536 5.917541 AATACACGGCCGAACAATATAAG 57.082 39.130 35.90 9.91 0.00 1.73
2029 2537 3.530265 ACACGGCCGAACAATATAAGA 57.470 42.857 35.90 0.00 0.00 2.10
2030 2538 4.067972 ACACGGCCGAACAATATAAGAT 57.932 40.909 35.90 0.00 0.00 2.40
2031 2539 3.807622 ACACGGCCGAACAATATAAGATG 59.192 43.478 35.90 17.19 0.00 2.90
2032 2540 3.186409 CACGGCCGAACAATATAAGATGG 59.814 47.826 35.90 0.00 0.00 3.51
2033 2541 3.181458 ACGGCCGAACAATATAAGATGGT 60.181 43.478 35.90 0.00 0.00 3.55
2034 2542 3.186409 CGGCCGAACAATATAAGATGGTG 59.814 47.826 24.07 0.00 0.00 4.17
2035 2543 4.385825 GGCCGAACAATATAAGATGGTGA 58.614 43.478 0.00 0.00 0.00 4.02
2036 2544 4.452455 GGCCGAACAATATAAGATGGTGAG 59.548 45.833 0.00 0.00 0.00 3.51
2037 2545 5.297547 GCCGAACAATATAAGATGGTGAGA 58.702 41.667 0.00 0.00 0.00 3.27
2038 2546 5.934625 GCCGAACAATATAAGATGGTGAGAT 59.065 40.000 0.00 0.00 0.00 2.75
2039 2547 7.097192 GCCGAACAATATAAGATGGTGAGATA 58.903 38.462 0.00 0.00 0.00 1.98
2040 2548 7.602644 GCCGAACAATATAAGATGGTGAGATAA 59.397 37.037 0.00 0.00 0.00 1.75
2041 2549 8.926710 CCGAACAATATAAGATGGTGAGATAAC 58.073 37.037 0.00 0.00 0.00 1.89
2042 2550 8.926710 CGAACAATATAAGATGGTGAGATAACC 58.073 37.037 0.00 0.00 40.94 2.85
2043 2551 9.220767 GAACAATATAAGATGGTGAGATAACCC 57.779 37.037 0.00 0.00 39.70 4.11
2044 2552 8.275187 ACAATATAAGATGGTGAGATAACCCA 57.725 34.615 0.00 0.00 39.70 4.51
2045 2553 8.157476 ACAATATAAGATGGTGAGATAACCCAC 58.843 37.037 0.00 0.00 39.70 4.61
2046 2554 8.378565 CAATATAAGATGGTGAGATAACCCACT 58.621 37.037 0.00 0.00 39.70 4.00
2047 2555 4.762289 AAGATGGTGAGATAACCCACTC 57.238 45.455 0.00 0.00 39.70 3.51
2048 2556 3.724478 AGATGGTGAGATAACCCACTCA 58.276 45.455 0.00 0.00 39.70 3.41
2054 2562 3.674997 TGAGATAACCCACTCACAAAGC 58.325 45.455 0.00 0.00 38.08 3.51
2055 2563 3.327757 TGAGATAACCCACTCACAAAGCT 59.672 43.478 0.00 0.00 38.08 3.74
2056 2564 3.679389 AGATAACCCACTCACAAAGCTG 58.321 45.455 0.00 0.00 0.00 4.24
2057 2565 3.327757 AGATAACCCACTCACAAAGCTGA 59.672 43.478 0.00 0.00 0.00 4.26
2058 2566 2.664402 AACCCACTCACAAAGCTGAT 57.336 45.000 0.00 0.00 0.00 2.90
2059 2567 2.664402 ACCCACTCACAAAGCTGATT 57.336 45.000 0.00 0.00 0.00 2.57
2060 2568 2.949447 ACCCACTCACAAAGCTGATTT 58.051 42.857 0.00 0.00 0.00 2.17
2061 2569 2.887152 ACCCACTCACAAAGCTGATTTC 59.113 45.455 0.00 0.00 0.00 2.17
2062 2570 2.886523 CCCACTCACAAAGCTGATTTCA 59.113 45.455 0.00 0.00 0.00 2.69
2063 2571 3.057736 CCCACTCACAAAGCTGATTTCAG 60.058 47.826 3.13 3.13 46.40 3.02
2064 2572 3.817084 CCACTCACAAAGCTGATTTCAGA 59.183 43.478 11.70 0.00 46.59 3.27
2065 2573 4.276678 CCACTCACAAAGCTGATTTCAGAA 59.723 41.667 11.70 0.00 46.59 3.02
2066 2574 5.210715 CACTCACAAAGCTGATTTCAGAAC 58.789 41.667 11.70 0.00 46.59 3.01
2067 2575 4.883585 ACTCACAAAGCTGATTTCAGAACA 59.116 37.500 11.70 0.00 46.59 3.18
2068 2576 5.357878 ACTCACAAAGCTGATTTCAGAACAA 59.642 36.000 11.70 0.00 46.59 2.83
2069 2577 6.040166 ACTCACAAAGCTGATTTCAGAACAAT 59.960 34.615 11.70 0.00 46.59 2.71
2070 2578 6.441274 TCACAAAGCTGATTTCAGAACAATC 58.559 36.000 11.70 0.00 46.59 2.67
2071 2579 6.039605 TCACAAAGCTGATTTCAGAACAATCA 59.960 34.615 11.70 0.00 46.59 2.57
2077 2585 5.964958 TGATTTCAGAACAATCAGGGAAC 57.035 39.130 0.00 0.00 36.03 3.62
2078 2586 5.384336 TGATTTCAGAACAATCAGGGAACA 58.616 37.500 0.00 0.00 36.03 3.18
2079 2587 6.012113 TGATTTCAGAACAATCAGGGAACAT 58.988 36.000 0.00 0.00 36.03 2.71
2080 2588 7.174413 TGATTTCAGAACAATCAGGGAACATA 58.826 34.615 0.00 0.00 36.03 2.29
2081 2589 7.337689 TGATTTCAGAACAATCAGGGAACATAG 59.662 37.037 0.00 0.00 36.03 2.23
2082 2590 6.373005 TTCAGAACAATCAGGGAACATAGA 57.627 37.500 0.00 0.00 0.00 1.98
2083 2591 6.373005 TCAGAACAATCAGGGAACATAGAA 57.627 37.500 0.00 0.00 0.00 2.10
2084 2592 6.173339 TCAGAACAATCAGGGAACATAGAAC 58.827 40.000 0.00 0.00 0.00 3.01
2085 2593 5.939883 CAGAACAATCAGGGAACATAGAACA 59.060 40.000 0.00 0.00 0.00 3.18
2086 2594 5.940470 AGAACAATCAGGGAACATAGAACAC 59.060 40.000 0.00 0.00 0.00 3.32
2087 2595 5.241403 ACAATCAGGGAACATAGAACACA 57.759 39.130 0.00 0.00 0.00 3.72
2088 2596 5.630121 ACAATCAGGGAACATAGAACACAA 58.370 37.500 0.00 0.00 0.00 3.33
2089 2597 5.707298 ACAATCAGGGAACATAGAACACAAG 59.293 40.000 0.00 0.00 0.00 3.16
2090 2598 3.674997 TCAGGGAACATAGAACACAAGC 58.325 45.455 0.00 0.00 0.00 4.01
2091 2599 3.072330 TCAGGGAACATAGAACACAAGCA 59.928 43.478 0.00 0.00 0.00 3.91
2092 2600 3.820467 CAGGGAACATAGAACACAAGCAA 59.180 43.478 0.00 0.00 0.00 3.91
2093 2601 3.821033 AGGGAACATAGAACACAAGCAAC 59.179 43.478 0.00 0.00 0.00 4.17
2094 2602 3.821033 GGGAACATAGAACACAAGCAACT 59.179 43.478 0.00 0.00 0.00 3.16
2095 2603 5.001232 GGGAACATAGAACACAAGCAACTA 58.999 41.667 0.00 0.00 0.00 2.24
2096 2604 5.106673 GGGAACATAGAACACAAGCAACTAC 60.107 44.000 0.00 0.00 0.00 2.73
2097 2605 5.389516 GGAACATAGAACACAAGCAACTACG 60.390 44.000 0.00 0.00 0.00 3.51
2098 2606 3.432252 ACATAGAACACAAGCAACTACGC 59.568 43.478 0.00 0.00 0.00 4.42
2099 2607 1.948104 AGAACACAAGCAACTACGCA 58.052 45.000 0.00 0.00 0.00 5.24
2100 2608 2.285083 AGAACACAAGCAACTACGCAA 58.715 42.857 0.00 0.00 0.00 4.85
2101 2609 2.031683 AGAACACAAGCAACTACGCAAC 59.968 45.455 0.00 0.00 0.00 4.17
2102 2610 0.661020 ACACAAGCAACTACGCAACC 59.339 50.000 0.00 0.00 0.00 3.77
2103 2611 0.660488 CACAAGCAACTACGCAACCA 59.340 50.000 0.00 0.00 0.00 3.67
2104 2612 1.064803 CACAAGCAACTACGCAACCAA 59.935 47.619 0.00 0.00 0.00 3.67
2105 2613 1.746220 ACAAGCAACTACGCAACCAAA 59.254 42.857 0.00 0.00 0.00 3.28
2106 2614 2.164624 ACAAGCAACTACGCAACCAAAA 59.835 40.909 0.00 0.00 0.00 2.44
2107 2615 2.774439 AGCAACTACGCAACCAAAAG 57.226 45.000 0.00 0.00 0.00 2.27
2108 2616 2.294074 AGCAACTACGCAACCAAAAGA 58.706 42.857 0.00 0.00 0.00 2.52
2109 2617 2.884639 AGCAACTACGCAACCAAAAGAT 59.115 40.909 0.00 0.00 0.00 2.40
2110 2618 4.069304 AGCAACTACGCAACCAAAAGATA 58.931 39.130 0.00 0.00 0.00 1.98
2111 2619 4.517453 AGCAACTACGCAACCAAAAGATAA 59.483 37.500 0.00 0.00 0.00 1.75
2112 2620 4.615541 GCAACTACGCAACCAAAAGATAAC 59.384 41.667 0.00 0.00 0.00 1.89
2113 2621 5.753744 CAACTACGCAACCAAAAGATAACA 58.246 37.500 0.00 0.00 0.00 2.41
2114 2622 5.352643 ACTACGCAACCAAAAGATAACAC 57.647 39.130 0.00 0.00 0.00 3.32
2115 2623 4.817464 ACTACGCAACCAAAAGATAACACA 59.183 37.500 0.00 0.00 0.00 3.72
2116 2624 4.223320 ACGCAACCAAAAGATAACACAG 57.777 40.909 0.00 0.00 0.00 3.66
2117 2625 3.880490 ACGCAACCAAAAGATAACACAGA 59.120 39.130 0.00 0.00 0.00 3.41
2118 2626 4.336993 ACGCAACCAAAAGATAACACAGAA 59.663 37.500 0.00 0.00 0.00 3.02
2119 2627 5.163602 ACGCAACCAAAAGATAACACAGAAA 60.164 36.000 0.00 0.00 0.00 2.52
2120 2628 5.746245 CGCAACCAAAAGATAACACAGAAAA 59.254 36.000 0.00 0.00 0.00 2.29
2121 2629 6.291585 CGCAACCAAAAGATAACACAGAAAAC 60.292 38.462 0.00 0.00 0.00 2.43
2122 2630 6.019075 GCAACCAAAAGATAACACAGAAAACC 60.019 38.462 0.00 0.00 0.00 3.27
2123 2631 7.264947 CAACCAAAAGATAACACAGAAAACCT 58.735 34.615 0.00 0.00 0.00 3.50
2134 2642 2.654863 CAGAAAACCTGGGAACACAGT 58.345 47.619 0.00 0.00 39.23 3.55
2135 2643 2.618709 CAGAAAACCTGGGAACACAGTC 59.381 50.000 0.00 0.00 39.23 3.51
2136 2644 2.241176 AGAAAACCTGGGAACACAGTCA 59.759 45.455 0.00 0.00 36.75 3.41
2137 2645 2.052782 AAACCTGGGAACACAGTCAC 57.947 50.000 0.00 0.00 36.75 3.67
2138 2646 0.916086 AACCTGGGAACACAGTCACA 59.084 50.000 0.00 0.00 36.75 3.58
2139 2647 0.180406 ACCTGGGAACACAGTCACAC 59.820 55.000 0.00 0.00 36.75 3.82
2140 2648 0.469917 CCTGGGAACACAGTCACACT 59.530 55.000 3.38 0.00 36.75 3.55
2141 2649 1.691976 CCTGGGAACACAGTCACACTA 59.308 52.381 3.38 0.00 36.75 2.74
2142 2650 2.548067 CCTGGGAACACAGTCACACTAC 60.548 54.545 3.38 0.00 36.75 2.73
2143 2651 1.067974 TGGGAACACAGTCACACTACG 59.932 52.381 0.00 0.00 33.40 3.51
2144 2652 1.137513 GGAACACAGTCACACTACGC 58.862 55.000 0.00 0.00 0.00 4.42
2145 2653 1.137513 GAACACAGTCACACTACGCC 58.862 55.000 0.00 0.00 0.00 5.68
2146 2654 0.249741 AACACAGTCACACTACGCCC 60.250 55.000 0.00 0.00 0.00 6.13
2147 2655 1.113517 ACACAGTCACACTACGCCCT 61.114 55.000 0.00 0.00 0.00 5.19
2148 2656 0.033504 CACAGTCACACTACGCCCTT 59.966 55.000 0.00 0.00 0.00 3.95
2149 2657 0.756903 ACAGTCACACTACGCCCTTT 59.243 50.000 0.00 0.00 0.00 3.11
2150 2658 1.140252 ACAGTCACACTACGCCCTTTT 59.860 47.619 0.00 0.00 0.00 2.27
2151 2659 2.218603 CAGTCACACTACGCCCTTTTT 58.781 47.619 0.00 0.00 0.00 1.94
2172 2680 3.434940 TTTAGAAAAGGAGGCTGACCC 57.565 47.619 0.00 0.00 36.11 4.46
2173 2681 1.286248 TAGAAAAGGAGGCTGACCCC 58.714 55.000 0.00 0.00 36.11 4.95
2174 2682 1.000771 GAAAAGGAGGCTGACCCCC 60.001 63.158 0.00 0.00 36.11 5.40
2175 2683 2.821679 GAAAAGGAGGCTGACCCCCG 62.822 65.000 0.00 0.00 36.11 5.73
2188 2696 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
2189 2697 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
2190 2698 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
2193 2701 4.166888 GCCTCTGCATCTGGGCGA 62.167 66.667 0.00 0.00 37.47 5.54
2194 2702 2.827423 CCTCTGCATCTGGGCGAT 59.173 61.111 0.00 0.00 36.28 4.58
2201 2709 3.310727 CATCTGGGCGATGCATACA 57.689 52.632 0.00 0.00 42.75 2.29
2202 2710 1.154197 CATCTGGGCGATGCATACAG 58.846 55.000 0.00 6.51 42.75 2.74
2203 2711 0.604780 ATCTGGGCGATGCATACAGC 60.605 55.000 0.00 5.92 45.96 4.40
2207 2715 4.131376 GCGATGCATACAGCCACT 57.869 55.556 0.00 0.00 44.83 4.00
2208 2716 2.397751 GCGATGCATACAGCCACTT 58.602 52.632 0.00 0.00 44.83 3.16
2209 2717 0.734889 GCGATGCATACAGCCACTTT 59.265 50.000 0.00 0.00 44.83 2.66
2210 2718 1.939934 GCGATGCATACAGCCACTTTA 59.060 47.619 0.00 0.00 44.83 1.85
2211 2719 2.549754 GCGATGCATACAGCCACTTTAT 59.450 45.455 0.00 0.00 44.83 1.40
2212 2720 3.003689 GCGATGCATACAGCCACTTTATT 59.996 43.478 0.00 0.00 44.83 1.40
2213 2721 4.213270 GCGATGCATACAGCCACTTTATTA 59.787 41.667 0.00 0.00 44.83 0.98
2214 2722 5.277779 GCGATGCATACAGCCACTTTATTAA 60.278 40.000 0.00 0.00 44.83 1.40
2215 2723 6.568462 GCGATGCATACAGCCACTTTATTAAT 60.568 38.462 0.00 0.00 44.83 1.40
2216 2724 7.362662 CGATGCATACAGCCACTTTATTAATT 58.637 34.615 0.00 0.00 44.83 1.40
2217 2725 8.503196 CGATGCATACAGCCACTTTATTAATTA 58.497 33.333 0.00 0.00 44.83 1.40
2225 2733 9.461312 ACAGCCACTTTATTAATTATTCTCACA 57.539 29.630 0.00 0.00 0.00 3.58
2239 2747 9.574516 AATTATTCTCACAAGACCTTACAAAGT 57.425 29.630 0.00 0.00 0.00 2.66
2240 2748 8.603242 TTATTCTCACAAGACCTTACAAAGTC 57.397 34.615 0.00 0.00 0.00 3.01
2241 2749 5.607939 TCTCACAAGACCTTACAAAGTCA 57.392 39.130 0.00 0.00 0.00 3.41
2242 2750 6.174720 TCTCACAAGACCTTACAAAGTCAT 57.825 37.500 0.00 0.00 0.00 3.06
2243 2751 7.297936 TCTCACAAGACCTTACAAAGTCATA 57.702 36.000 0.00 0.00 0.00 2.15
2244 2752 7.152645 TCTCACAAGACCTTACAAAGTCATAC 58.847 38.462 0.00 0.00 0.00 2.39
2245 2753 6.822442 TCACAAGACCTTACAAAGTCATACA 58.178 36.000 0.00 0.00 0.00 2.29
2246 2754 7.276658 TCACAAGACCTTACAAAGTCATACAA 58.723 34.615 0.00 0.00 0.00 2.41
2247 2755 7.225931 TCACAAGACCTTACAAAGTCATACAAC 59.774 37.037 0.00 0.00 0.00 3.32
2248 2756 7.011950 CACAAGACCTTACAAAGTCATACAACA 59.988 37.037 0.00 0.00 0.00 3.33
2249 2757 7.226720 ACAAGACCTTACAAAGTCATACAACAG 59.773 37.037 0.00 0.00 0.00 3.16
2250 2758 6.827727 AGACCTTACAAAGTCATACAACAGT 58.172 36.000 0.00 0.00 0.00 3.55
2251 2759 7.959175 AGACCTTACAAAGTCATACAACAGTA 58.041 34.615 0.00 0.00 0.00 2.74
2252 2760 8.426489 AGACCTTACAAAGTCATACAACAGTAA 58.574 33.333 0.00 0.00 0.00 2.24
2253 2761 8.603242 ACCTTACAAAGTCATACAACAGTAAG 57.397 34.615 0.00 0.00 37.80 2.34
2254 2762 8.426489 ACCTTACAAAGTCATACAACAGTAAGA 58.574 33.333 0.00 0.00 39.45 2.10
2255 2763 8.709646 CCTTACAAAGTCATACAACAGTAAGAC 58.290 37.037 0.00 3.57 39.45 3.01
2256 2764 9.477484 CTTACAAAGTCATACAACAGTAAGACT 57.523 33.333 7.48 7.48 44.26 3.24
2259 2767 9.826574 ACAAAGTCATACAACAGTAAGACTAAA 57.173 29.630 12.21 0.00 42.62 1.85
2261 2769 8.535690 AAGTCATACAACAGTAAGACTAAAGC 57.464 34.615 12.21 0.00 42.62 3.51
2262 2770 7.097834 AGTCATACAACAGTAAGACTAAAGCC 58.902 38.462 10.67 0.00 42.02 4.35
2263 2771 6.034683 GTCATACAACAGTAAGACTAAAGCCG 59.965 42.308 4.35 0.00 34.99 5.52
2264 2772 3.064931 ACAACAGTAAGACTAAAGCCGC 58.935 45.455 0.00 0.00 0.00 6.53
2265 2773 2.381725 ACAGTAAGACTAAAGCCGCC 57.618 50.000 0.00 0.00 0.00 6.13
2266 2774 1.621814 ACAGTAAGACTAAAGCCGCCA 59.378 47.619 0.00 0.00 0.00 5.69
2267 2775 2.236395 ACAGTAAGACTAAAGCCGCCAT 59.764 45.455 0.00 0.00 0.00 4.40
2268 2776 2.866762 CAGTAAGACTAAAGCCGCCATC 59.133 50.000 0.00 0.00 0.00 3.51
2269 2777 2.766828 AGTAAGACTAAAGCCGCCATCT 59.233 45.455 0.00 0.00 0.00 2.90
2270 2778 3.958798 AGTAAGACTAAAGCCGCCATCTA 59.041 43.478 0.00 0.00 0.00 1.98
2271 2779 3.906720 AAGACTAAAGCCGCCATCTAA 57.093 42.857 0.00 0.00 0.00 2.10
2272 2780 3.460857 AGACTAAAGCCGCCATCTAAG 57.539 47.619 0.00 0.00 0.00 2.18
2273 2781 1.867865 GACTAAAGCCGCCATCTAAGC 59.132 52.381 0.00 0.00 0.00 3.09
2274 2782 1.209504 ACTAAAGCCGCCATCTAAGCA 59.790 47.619 0.00 0.00 0.00 3.91
2275 2783 2.288666 CTAAAGCCGCCATCTAAGCAA 58.711 47.619 0.00 0.00 0.00 3.91
2276 2784 0.811281 AAAGCCGCCATCTAAGCAAC 59.189 50.000 0.00 0.00 0.00 4.17
2277 2785 0.322456 AAGCCGCCATCTAAGCAACA 60.322 50.000 0.00 0.00 0.00 3.33
2278 2786 0.322456 AGCCGCCATCTAAGCAACAA 60.322 50.000 0.00 0.00 0.00 2.83
2279 2787 0.099436 GCCGCCATCTAAGCAACAAG 59.901 55.000 0.00 0.00 0.00 3.16
2280 2788 0.099436 CCGCCATCTAAGCAACAAGC 59.901 55.000 0.00 0.00 46.19 4.01
2297 2805 1.033574 AGCTGTCGCTACACCTATCC 58.966 55.000 0.00 0.00 46.79 2.59
2298 2806 0.744874 GCTGTCGCTACACCTATCCA 59.255 55.000 0.00 0.00 0.00 3.41
2299 2807 1.269309 GCTGTCGCTACACCTATCCAG 60.269 57.143 0.00 0.00 0.00 3.86
2300 2808 2.025155 CTGTCGCTACACCTATCCAGT 58.975 52.381 0.00 0.00 0.00 4.00
2301 2809 2.427453 CTGTCGCTACACCTATCCAGTT 59.573 50.000 0.00 0.00 0.00 3.16
2302 2810 2.165641 TGTCGCTACACCTATCCAGTTG 59.834 50.000 0.00 0.00 0.00 3.16
2303 2811 2.426024 GTCGCTACACCTATCCAGTTGA 59.574 50.000 0.00 0.00 0.00 3.18
2304 2812 3.068307 GTCGCTACACCTATCCAGTTGAT 59.932 47.826 0.00 0.00 37.49 2.57
2305 2813 3.068165 TCGCTACACCTATCCAGTTGATG 59.932 47.826 0.00 0.00 34.76 3.07
2306 2814 3.068165 CGCTACACCTATCCAGTTGATGA 59.932 47.826 0.00 0.00 34.76 2.92
2307 2815 4.441495 CGCTACACCTATCCAGTTGATGAA 60.441 45.833 0.00 0.00 34.76 2.57
2308 2816 5.053145 GCTACACCTATCCAGTTGATGAAG 58.947 45.833 0.00 0.00 34.76 3.02
2309 2817 4.494091 ACACCTATCCAGTTGATGAAGG 57.506 45.455 0.00 0.00 34.76 3.46
2310 2818 3.200825 ACACCTATCCAGTTGATGAAGGG 59.799 47.826 0.00 0.00 34.76 3.95
2311 2819 2.780010 ACCTATCCAGTTGATGAAGGGG 59.220 50.000 0.00 0.00 34.76 4.79
2312 2820 2.487986 CCTATCCAGTTGATGAAGGGGC 60.488 54.545 0.00 0.00 34.76 5.80
2313 2821 0.107017 ATCCAGTTGATGAAGGGGCG 60.107 55.000 0.00 0.00 30.54 6.13
2314 2822 2.409870 CCAGTTGATGAAGGGGCGC 61.410 63.158 0.00 0.00 0.00 6.53
2315 2823 1.675310 CAGTTGATGAAGGGGCGCA 60.675 57.895 10.83 0.00 0.00 6.09
2316 2824 1.377725 AGTTGATGAAGGGGCGCAG 60.378 57.895 10.83 0.00 0.00 5.18
2317 2825 1.377202 GTTGATGAAGGGGCGCAGA 60.377 57.895 10.83 0.00 0.00 4.26
2318 2826 0.749454 GTTGATGAAGGGGCGCAGAT 60.749 55.000 10.83 0.00 0.00 2.90
2319 2827 0.836606 TTGATGAAGGGGCGCAGATA 59.163 50.000 10.83 0.00 0.00 1.98
2320 2828 0.394192 TGATGAAGGGGCGCAGATAG 59.606 55.000 10.83 0.00 0.00 2.08
2321 2829 0.952984 GATGAAGGGGCGCAGATAGC 60.953 60.000 10.83 0.00 40.87 2.97
2329 2837 3.554342 CGCAGATAGCCTGGGCCT 61.554 66.667 4.53 0.00 46.58 5.19
2330 2838 2.210013 CGCAGATAGCCTGGGCCTA 61.210 63.158 4.53 0.00 46.58 3.93
2331 2839 1.758440 CGCAGATAGCCTGGGCCTAA 61.758 60.000 4.53 0.00 46.58 2.69
2332 2840 0.695347 GCAGATAGCCTGGGCCTAAT 59.305 55.000 4.53 0.00 43.13 1.73
2333 2841 1.909302 GCAGATAGCCTGGGCCTAATA 59.091 52.381 4.53 0.00 43.13 0.98
2334 2842 2.355209 GCAGATAGCCTGGGCCTAATAC 60.355 54.545 4.53 0.00 43.13 1.89
2335 2843 2.237392 CAGATAGCCTGGGCCTAATACC 59.763 54.545 4.53 0.00 43.17 2.73
2336 2844 2.158004 AGATAGCCTGGGCCTAATACCA 60.158 50.000 4.53 0.00 43.17 3.25
2337 2845 2.199927 TAGCCTGGGCCTAATACCAA 57.800 50.000 4.53 0.00 43.17 3.67
2338 2846 1.304891 AGCCTGGGCCTAATACCAAA 58.695 50.000 4.53 0.00 43.17 3.28
2339 2847 1.063942 AGCCTGGGCCTAATACCAAAC 60.064 52.381 4.53 0.00 43.17 2.93
2340 2848 1.341581 GCCTGGGCCTAATACCAAACA 60.342 52.381 4.53 0.00 36.09 2.83
2341 2849 2.654863 CCTGGGCCTAATACCAAACAG 58.345 52.381 4.53 0.00 36.09 3.16
2342 2850 2.241176 CCTGGGCCTAATACCAAACAGA 59.759 50.000 4.53 0.00 36.09 3.41
2343 2851 3.279434 CTGGGCCTAATACCAAACAGAC 58.721 50.000 4.53 0.00 36.09 3.51
2344 2852 2.645297 TGGGCCTAATACCAAACAGACA 59.355 45.455 4.53 0.00 32.89 3.41
2345 2853 3.268334 TGGGCCTAATACCAAACAGACAT 59.732 43.478 4.53 0.00 32.89 3.06
2346 2854 3.883489 GGGCCTAATACCAAACAGACATC 59.117 47.826 0.84 0.00 0.00 3.06
2347 2855 3.560068 GGCCTAATACCAAACAGACATCG 59.440 47.826 0.00 0.00 0.00 3.84
2348 2856 3.002348 GCCTAATACCAAACAGACATCGC 59.998 47.826 0.00 0.00 0.00 4.58
2349 2857 4.188462 CCTAATACCAAACAGACATCGCA 58.812 43.478 0.00 0.00 0.00 5.10
2350 2858 4.271049 CCTAATACCAAACAGACATCGCAG 59.729 45.833 0.00 0.00 0.00 5.18
2351 2859 1.438651 TACCAAACAGACATCGCAGC 58.561 50.000 0.00 0.00 0.00 5.25
2352 2860 1.237285 ACCAAACAGACATCGCAGCC 61.237 55.000 0.00 0.00 0.00 4.85
2353 2861 1.236616 CCAAACAGACATCGCAGCCA 61.237 55.000 0.00 0.00 0.00 4.75
2354 2862 0.592637 CAAACAGACATCGCAGCCAA 59.407 50.000 0.00 0.00 0.00 4.52
2355 2863 0.877071 AAACAGACATCGCAGCCAAG 59.123 50.000 0.00 0.00 0.00 3.61
2356 2864 1.580845 AACAGACATCGCAGCCAAGC 61.581 55.000 0.00 0.00 0.00 4.01
2357 2865 2.437359 AGACATCGCAGCCAAGCC 60.437 61.111 0.00 0.00 0.00 4.35
2358 2866 2.437359 GACATCGCAGCCAAGCCT 60.437 61.111 0.00 0.00 0.00 4.58
2359 2867 1.153369 GACATCGCAGCCAAGCCTA 60.153 57.895 0.00 0.00 0.00 3.93
2360 2868 0.744414 GACATCGCAGCCAAGCCTAA 60.744 55.000 0.00 0.00 0.00 2.69
2361 2869 1.026718 ACATCGCAGCCAAGCCTAAC 61.027 55.000 0.00 0.00 0.00 2.34
2362 2870 1.026182 CATCGCAGCCAAGCCTAACA 61.026 55.000 0.00 0.00 0.00 2.41
2363 2871 0.107017 ATCGCAGCCAAGCCTAACAT 60.107 50.000 0.00 0.00 0.00 2.71
2364 2872 0.744414 TCGCAGCCAAGCCTAACATC 60.744 55.000 0.00 0.00 0.00 3.06
2365 2873 0.745845 CGCAGCCAAGCCTAACATCT 60.746 55.000 0.00 0.00 0.00 2.90
2366 2874 1.473257 CGCAGCCAAGCCTAACATCTA 60.473 52.381 0.00 0.00 0.00 1.98
2367 2875 2.643551 GCAGCCAAGCCTAACATCTAA 58.356 47.619 0.00 0.00 0.00 2.10
2368 2876 2.615912 GCAGCCAAGCCTAACATCTAAG 59.384 50.000 0.00 0.00 0.00 2.18
2369 2877 3.682718 GCAGCCAAGCCTAACATCTAAGA 60.683 47.826 0.00 0.00 0.00 2.10
2370 2878 3.873952 CAGCCAAGCCTAACATCTAAGAC 59.126 47.826 0.00 0.00 0.00 3.01
2371 2879 3.118223 AGCCAAGCCTAACATCTAAGACC 60.118 47.826 0.00 0.00 0.00 3.85
2372 2880 3.118223 GCCAAGCCTAACATCTAAGACCT 60.118 47.826 0.00 0.00 0.00 3.85
2373 2881 4.101119 GCCAAGCCTAACATCTAAGACCTA 59.899 45.833 0.00 0.00 0.00 3.08
2374 2882 5.396436 GCCAAGCCTAACATCTAAGACCTAA 60.396 44.000 0.00 0.00 0.00 2.69
2375 2883 6.284459 CCAAGCCTAACATCTAAGACCTAAG 58.716 44.000 0.00 0.00 0.00 2.18
2376 2884 6.098409 CCAAGCCTAACATCTAAGACCTAAGA 59.902 42.308 0.00 0.00 0.00 2.10
2377 2885 6.718522 AGCCTAACATCTAAGACCTAAGAC 57.281 41.667 0.00 0.00 0.00 3.01
2378 2886 5.599242 AGCCTAACATCTAAGACCTAAGACC 59.401 44.000 0.00 0.00 0.00 3.85
2379 2887 5.221481 GCCTAACATCTAAGACCTAAGACCC 60.221 48.000 0.00 0.00 0.00 4.46
2380 2888 5.304871 CCTAACATCTAAGACCTAAGACCCC 59.695 48.000 0.00 0.00 0.00 4.95
2381 2889 4.348020 ACATCTAAGACCTAAGACCCCA 57.652 45.455 0.00 0.00 0.00 4.96
2382 2890 4.695606 ACATCTAAGACCTAAGACCCCAA 58.304 43.478 0.00 0.00 0.00 4.12
2383 2891 4.470304 ACATCTAAGACCTAAGACCCCAAC 59.530 45.833 0.00 0.00 0.00 3.77
2384 2892 3.447950 TCTAAGACCTAAGACCCCAACC 58.552 50.000 0.00 0.00 0.00 3.77
2385 2893 2.435203 AAGACCTAAGACCCCAACCT 57.565 50.000 0.00 0.00 0.00 3.50
2386 2894 3.572661 AAGACCTAAGACCCCAACCTA 57.427 47.619 0.00 0.00 0.00 3.08
2387 2895 3.117552 AGACCTAAGACCCCAACCTAG 57.882 52.381 0.00 0.00 0.00 3.02
2388 2896 1.485480 GACCTAAGACCCCAACCTAGC 59.515 57.143 0.00 0.00 0.00 3.42
2389 2897 0.837940 CCTAAGACCCCAACCTAGCC 59.162 60.000 0.00 0.00 0.00 3.93
2390 2898 1.580059 CTAAGACCCCAACCTAGCCA 58.420 55.000 0.00 0.00 0.00 4.75
2391 2899 1.209747 CTAAGACCCCAACCTAGCCAC 59.790 57.143 0.00 0.00 0.00 5.01
2392 2900 0.475828 AAGACCCCAACCTAGCCACT 60.476 55.000 0.00 0.00 0.00 4.00
2393 2901 0.475828 AGACCCCAACCTAGCCACTT 60.476 55.000 0.00 0.00 0.00 3.16
2394 2902 0.322546 GACCCCAACCTAGCCACTTG 60.323 60.000 0.00 0.00 0.00 3.16
2395 2903 1.678970 CCCCAACCTAGCCACTTGC 60.679 63.158 0.00 0.00 41.71 4.01
2396 2904 1.678970 CCCAACCTAGCCACTTGCC 60.679 63.158 0.00 0.00 42.71 4.52
2397 2905 2.040544 CCAACCTAGCCACTTGCCG 61.041 63.158 0.00 0.00 42.71 5.69
2398 2906 2.040544 CAACCTAGCCACTTGCCGG 61.041 63.158 0.00 0.00 42.71 6.13
2399 2907 3.268103 AACCTAGCCACTTGCCGGG 62.268 63.158 2.18 0.00 42.71 5.73
2400 2908 3.717294 CCTAGCCACTTGCCGGGT 61.717 66.667 2.18 0.00 42.71 5.28
2401 2909 2.125106 CTAGCCACTTGCCGGGTC 60.125 66.667 2.18 0.00 42.71 4.46
2402 2910 2.606519 TAGCCACTTGCCGGGTCT 60.607 61.111 2.18 0.00 42.71 3.85
2403 2911 2.859273 CTAGCCACTTGCCGGGTCTG 62.859 65.000 2.18 0.00 42.71 3.51
2405 2913 4.722700 CCACTTGCCGGGTCTGGG 62.723 72.222 2.18 0.00 0.00 4.45
2406 2914 4.722700 CACTTGCCGGGTCTGGGG 62.723 72.222 2.18 0.00 0.00 4.96
2414 2922 3.570212 GGGTCTGGGGCACACACT 61.570 66.667 0.00 0.00 0.00 3.55
2415 2923 2.281761 GGTCTGGGGCACACACTG 60.282 66.667 0.00 0.00 0.00 3.66
2416 2924 2.281761 GTCTGGGGCACACACTGG 60.282 66.667 0.00 0.00 0.00 4.00
2417 2925 2.772191 TCTGGGGCACACACTGGT 60.772 61.111 0.00 0.00 0.00 4.00
2418 2926 2.281761 CTGGGGCACACACTGGTC 60.282 66.667 0.00 0.00 0.00 4.02
2419 2927 3.850098 CTGGGGCACACACTGGTCC 62.850 68.421 0.00 0.00 0.00 4.46
2424 2932 4.602259 CACACACTGGTCCGGCGT 62.602 66.667 6.01 0.00 0.00 5.68
2425 2933 4.602259 ACACACTGGTCCGGCGTG 62.602 66.667 15.97 15.97 34.92 5.34
2430 2938 4.803426 CTGGTCCGGCGTGCTCTC 62.803 72.222 6.01 0.00 0.00 3.20
2432 2940 4.803426 GGTCCGGCGTGCTCTCAG 62.803 72.222 6.01 0.00 0.00 3.35
2433 2941 3.749064 GTCCGGCGTGCTCTCAGA 61.749 66.667 6.01 0.00 0.00 3.27
2434 2942 3.443925 TCCGGCGTGCTCTCAGAG 61.444 66.667 6.01 0.00 0.00 3.35
2435 2943 4.504916 CCGGCGTGCTCTCAGAGG 62.505 72.222 6.01 0.00 0.00 3.69
2437 2945 4.828925 GGCGTGCTCTCAGAGGCC 62.829 72.222 3.18 4.12 0.00 5.19
2440 2948 4.828925 GTGCTCTCAGAGGCCGCC 62.829 72.222 3.18 0.00 0.00 6.13
2457 2965 4.781959 CGCCGCCAACTGCCATTG 62.782 66.667 0.00 0.00 36.24 2.82
2459 2967 3.376078 CCGCCAACTGCCATTGCT 61.376 61.111 0.00 0.00 38.71 3.91
2460 2968 2.180017 CGCCAACTGCCATTGCTC 59.820 61.111 0.00 0.00 38.71 4.26
2461 2969 2.575461 GCCAACTGCCATTGCTCC 59.425 61.111 0.00 0.00 38.71 4.70
2462 2970 2.277591 GCCAACTGCCATTGCTCCA 61.278 57.895 0.00 0.00 38.71 3.86
2463 2971 1.610554 GCCAACTGCCATTGCTCCAT 61.611 55.000 0.00 0.00 38.71 3.41
2464 2972 0.458669 CCAACTGCCATTGCTCCATC 59.541 55.000 0.00 0.00 38.71 3.51
2465 2973 1.471119 CAACTGCCATTGCTCCATCT 58.529 50.000 0.00 0.00 38.71 2.90
2466 2974 1.822990 CAACTGCCATTGCTCCATCTT 59.177 47.619 0.00 0.00 38.71 2.40
2467 2975 1.760192 ACTGCCATTGCTCCATCTTC 58.240 50.000 0.00 0.00 38.71 2.87
2468 2976 1.005097 ACTGCCATTGCTCCATCTTCA 59.995 47.619 0.00 0.00 38.71 3.02
2469 2977 1.676529 CTGCCATTGCTCCATCTTCAG 59.323 52.381 0.00 0.00 38.71 3.02
2470 2978 1.282738 TGCCATTGCTCCATCTTCAGA 59.717 47.619 0.00 0.00 38.71 3.27
2471 2979 2.291089 TGCCATTGCTCCATCTTCAGAA 60.291 45.455 0.00 0.00 38.71 3.02
2472 2980 2.098770 GCCATTGCTCCATCTTCAGAAC 59.901 50.000 0.00 0.00 33.53 3.01
2473 2981 3.618351 CCATTGCTCCATCTTCAGAACT 58.382 45.455 0.00 0.00 0.00 3.01
2474 2982 4.774124 CCATTGCTCCATCTTCAGAACTA 58.226 43.478 0.00 0.00 0.00 2.24
2475 2983 5.374921 CCATTGCTCCATCTTCAGAACTAT 58.625 41.667 0.00 0.00 0.00 2.12
2476 2984 6.528321 CCATTGCTCCATCTTCAGAACTATA 58.472 40.000 0.00 0.00 0.00 1.31
2477 2985 6.426328 CCATTGCTCCATCTTCAGAACTATAC 59.574 42.308 0.00 0.00 0.00 1.47
2478 2986 6.798427 TTGCTCCATCTTCAGAACTATACT 57.202 37.500 0.00 0.00 0.00 2.12
2479 2987 6.154203 TGCTCCATCTTCAGAACTATACTG 57.846 41.667 0.00 0.00 36.80 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 91 2.124529 GGCTAGGCAGGCAAGGAC 60.125 66.667 12.16 0.00 46.44 3.85
129 131 0.040942 TATTTGGTGCATGGCCCTGT 59.959 50.000 9.95 0.00 0.00 4.00
139 141 3.836949 CCAACATGTGAGTATTTGGTGC 58.163 45.455 0.00 0.00 33.39 5.01
153 155 1.624813 AGGAAATTGGTGGCCAACATG 59.375 47.619 27.47 0.00 46.95 3.21
274 277 2.849294 TCATGTTCATCCGTCCAACA 57.151 45.000 0.00 0.00 34.61 3.33
279 282 6.049149 TCTTATTCCTTCATGTTCATCCGTC 58.951 40.000 0.00 0.00 0.00 4.79
356 361 6.040209 TGTGTAGTCTTTTAGGCCGAATTA 57.960 37.500 0.00 0.00 0.00 1.40
359 364 4.339872 TTGTGTAGTCTTTTAGGCCGAA 57.660 40.909 0.00 0.00 0.00 4.30
412 418 1.496060 ATCGACAGGTGCCTTGGATA 58.504 50.000 0.00 0.00 0.00 2.59
433 439 6.861065 AATATAATTACTTGGTGCTCCGTG 57.139 37.500 0.00 0.00 36.30 4.94
436 442 8.280497 CGTGTTAATATAATTACTTGGTGCTCC 58.720 37.037 0.00 0.00 0.00 4.70
453 459 6.751514 ATTTCAGTGGCATTCGTGTTAATA 57.248 33.333 0.00 0.00 0.00 0.98
454 460 5.643379 ATTTCAGTGGCATTCGTGTTAAT 57.357 34.783 0.00 0.00 0.00 1.40
455 461 5.446143 AATTTCAGTGGCATTCGTGTTAA 57.554 34.783 0.00 0.00 0.00 2.01
759 986 8.299570 AGAAGTGACAAAATGTTTATGTGATCC 58.700 33.333 0.00 0.00 0.00 3.36
790 1017 5.261744 TTGGTAACCAGAACGTGTTACGTC 61.262 45.833 16.06 7.72 44.54 4.34
876 1342 5.912149 ATAGCCAGGTGATTGATTTCCTA 57.088 39.130 0.00 0.00 0.00 2.94
900 1376 2.124695 GGGTCGATGCCTGGAACC 60.125 66.667 0.00 0.00 31.90 3.62
1140 1623 1.673009 CGGCATGGTTGGTACGGTT 60.673 57.895 0.00 0.00 0.00 4.44
1141 1624 2.046700 CGGCATGGTTGGTACGGT 60.047 61.111 0.00 0.00 0.00 4.83
1269 1770 4.681978 GTCACCTTCGGCACCGCT 62.682 66.667 3.66 0.00 39.59 5.52
1557 2063 2.290323 ACTCCTACTTCACATGGGCAAC 60.290 50.000 0.00 0.00 0.00 4.17
1598 2104 8.362639 ACAACTGAGAATTGAAATGTAAAGCAT 58.637 29.630 0.00 0.00 40.03 3.79
1599 2105 7.715657 ACAACTGAGAATTGAAATGTAAAGCA 58.284 30.769 0.00 0.00 0.00 3.91
1723 2231 5.196341 CAACGCATGGACCTCTTATACTA 57.804 43.478 0.00 0.00 0.00 1.82
1840 2348 2.065993 ACTGTAGTACGCTTGCACAG 57.934 50.000 8.00 8.00 41.83 3.66
1902 2410 4.397417 CCTCCACTAATTTTGCTTCTCCTG 59.603 45.833 0.00 0.00 0.00 3.86
1919 2427 4.553330 TTTATTGTGTCTCCTCCTCCAC 57.447 45.455 0.00 0.00 0.00 4.02
1920 2428 5.163141 TGTTTTTATTGTGTCTCCTCCTCCA 60.163 40.000 0.00 0.00 0.00 3.86
1922 2430 6.877611 TTGTTTTTATTGTGTCTCCTCCTC 57.122 37.500 0.00 0.00 0.00 3.71
1923 2431 7.123547 TGTTTTGTTTTTATTGTGTCTCCTCCT 59.876 33.333 0.00 0.00 0.00 3.69
1925 2433 8.696410 TTGTTTTGTTTTTATTGTGTCTCCTC 57.304 30.769 0.00 0.00 0.00 3.71
1926 2434 8.311109 ACTTGTTTTGTTTTTATTGTGTCTCCT 58.689 29.630 0.00 0.00 0.00 3.69
1928 2436 7.897800 GCACTTGTTTTGTTTTTATTGTGTCTC 59.102 33.333 0.00 0.00 0.00 3.36
1929 2437 7.411372 CGCACTTGTTTTGTTTTTATTGTGTCT 60.411 33.333 0.00 0.00 0.00 3.41
1955 2463 3.805385 AACACACACATGCGCGCAC 62.805 57.895 39.05 6.30 0.00 5.34
1956 2464 3.581156 AACACACACATGCGCGCA 61.581 55.556 38.27 38.27 0.00 6.09
1957 2465 2.436997 TACAACACACACATGCGCGC 62.437 55.000 27.26 27.26 0.00 6.86
1958 2466 0.165727 ATACAACACACACATGCGCG 59.834 50.000 0.00 0.00 0.00 6.86
1959 2467 2.241722 GAATACAACACACACATGCGC 58.758 47.619 0.00 0.00 0.00 6.09
1960 2468 3.534524 TGAATACAACACACACATGCG 57.465 42.857 0.00 0.00 0.00 4.73
1961 2469 5.039984 TGTTTGAATACAACACACACATGC 58.960 37.500 0.00 0.00 35.63 4.06
1962 2470 5.686841 CCTGTTTGAATACAACACACACATG 59.313 40.000 0.00 0.00 35.63 3.21
1963 2471 5.735922 GCCTGTTTGAATACAACACACACAT 60.736 40.000 0.00 0.00 35.63 3.21
1964 2472 4.439426 GCCTGTTTGAATACAACACACACA 60.439 41.667 0.00 0.00 35.63 3.72
1965 2473 4.041723 GCCTGTTTGAATACAACACACAC 58.958 43.478 0.00 0.00 35.63 3.82
1966 2474 3.951037 AGCCTGTTTGAATACAACACACA 59.049 39.130 0.00 0.00 35.63 3.72
1967 2475 4.568152 AGCCTGTTTGAATACAACACAC 57.432 40.909 0.00 0.00 35.63 3.82
1968 2476 5.587289 GAAAGCCTGTTTGAATACAACACA 58.413 37.500 0.00 0.00 35.63 3.72
1969 2477 4.675114 CGAAAGCCTGTTTGAATACAACAC 59.325 41.667 0.00 0.00 35.63 3.32
1970 2478 4.854399 CGAAAGCCTGTTTGAATACAACA 58.146 39.130 0.00 0.00 35.63 3.33
1987 2495 6.964934 GTGTATTTTATGTAACAGGGCGAAAG 59.035 38.462 0.00 0.00 0.00 2.62
1988 2496 6.402334 CGTGTATTTTATGTAACAGGGCGAAA 60.402 38.462 0.00 0.00 0.00 3.46
1989 2497 5.063691 CGTGTATTTTATGTAACAGGGCGAA 59.936 40.000 0.00 0.00 0.00 4.70
1990 2498 4.567558 CGTGTATTTTATGTAACAGGGCGA 59.432 41.667 0.00 0.00 0.00 5.54
1991 2499 4.260456 CCGTGTATTTTATGTAACAGGGCG 60.260 45.833 0.00 0.00 39.97 6.13
1992 2500 5.164606 CCGTGTATTTTATGTAACAGGGC 57.835 43.478 0.00 0.00 39.97 5.19
1993 2501 4.035909 GGCCGTGTATTTTATGTAACAGGG 59.964 45.833 8.31 8.31 45.93 4.45
1994 2502 4.260456 CGGCCGTGTATTTTATGTAACAGG 60.260 45.833 19.50 0.00 0.00 4.00
1995 2503 4.567558 TCGGCCGTGTATTTTATGTAACAG 59.432 41.667 27.15 0.00 0.00 3.16
1996 2504 4.502016 TCGGCCGTGTATTTTATGTAACA 58.498 39.130 27.15 0.00 0.00 2.41
1997 2505 5.163874 TGTTCGGCCGTGTATTTTATGTAAC 60.164 40.000 27.15 16.93 0.00 2.50
1998 2506 4.934001 TGTTCGGCCGTGTATTTTATGTAA 59.066 37.500 27.15 3.71 0.00 2.41
1999 2507 4.502016 TGTTCGGCCGTGTATTTTATGTA 58.498 39.130 27.15 0.00 0.00 2.29
2000 2508 3.336468 TGTTCGGCCGTGTATTTTATGT 58.664 40.909 27.15 0.00 0.00 2.29
2001 2509 4.343811 TTGTTCGGCCGTGTATTTTATG 57.656 40.909 27.15 0.00 0.00 1.90
2002 2510 6.870971 ATATTGTTCGGCCGTGTATTTTAT 57.129 33.333 27.15 11.74 0.00 1.40
2003 2511 7.710044 TCTTATATTGTTCGGCCGTGTATTTTA 59.290 33.333 27.15 9.94 0.00 1.52
2004 2512 6.539464 TCTTATATTGTTCGGCCGTGTATTTT 59.461 34.615 27.15 9.42 0.00 1.82
2005 2513 6.050432 TCTTATATTGTTCGGCCGTGTATTT 58.950 36.000 27.15 11.77 0.00 1.40
2006 2514 5.603596 TCTTATATTGTTCGGCCGTGTATT 58.396 37.500 27.15 11.29 0.00 1.89
2007 2515 5.204409 TCTTATATTGTTCGGCCGTGTAT 57.796 39.130 27.15 17.72 0.00 2.29
2008 2516 4.652421 TCTTATATTGTTCGGCCGTGTA 57.348 40.909 27.15 9.57 0.00 2.90
2009 2517 3.530265 TCTTATATTGTTCGGCCGTGT 57.470 42.857 27.15 6.07 0.00 4.49
2010 2518 3.186409 CCATCTTATATTGTTCGGCCGTG 59.814 47.826 27.15 10.88 0.00 4.94
2011 2519 3.181458 ACCATCTTATATTGTTCGGCCGT 60.181 43.478 27.15 7.91 0.00 5.68
2012 2520 3.186409 CACCATCTTATATTGTTCGGCCG 59.814 47.826 22.12 22.12 0.00 6.13
2013 2521 4.385825 TCACCATCTTATATTGTTCGGCC 58.614 43.478 0.00 0.00 0.00 6.13
2014 2522 5.297547 TCTCACCATCTTATATTGTTCGGC 58.702 41.667 0.00 0.00 0.00 5.54
2015 2523 8.926710 GTTATCTCACCATCTTATATTGTTCGG 58.073 37.037 0.00 0.00 0.00 4.30
2016 2524 8.926710 GGTTATCTCACCATCTTATATTGTTCG 58.073 37.037 0.00 0.00 36.73 3.95
2017 2525 9.220767 GGGTTATCTCACCATCTTATATTGTTC 57.779 37.037 0.00 0.00 38.79 3.18
2018 2526 8.723365 TGGGTTATCTCACCATCTTATATTGTT 58.277 33.333 0.00 0.00 38.79 2.83
2019 2527 8.157476 GTGGGTTATCTCACCATCTTATATTGT 58.843 37.037 0.00 0.00 38.79 2.71
2020 2528 8.378565 AGTGGGTTATCTCACCATCTTATATTG 58.621 37.037 0.00 0.00 38.79 1.90
2021 2529 8.511748 AGTGGGTTATCTCACCATCTTATATT 57.488 34.615 0.00 0.00 38.79 1.28
2022 2530 7.734865 TGAGTGGGTTATCTCACCATCTTATAT 59.265 37.037 0.00 0.00 38.79 0.86
2023 2531 7.073208 TGAGTGGGTTATCTCACCATCTTATA 58.927 38.462 0.00 0.00 38.79 0.98
2024 2532 5.905331 TGAGTGGGTTATCTCACCATCTTAT 59.095 40.000 0.00 0.00 38.79 1.73
2025 2533 5.277250 TGAGTGGGTTATCTCACCATCTTA 58.723 41.667 0.00 0.00 38.79 2.10
2026 2534 4.104086 TGAGTGGGTTATCTCACCATCTT 58.896 43.478 0.00 0.00 38.79 2.40
2027 2535 3.724478 TGAGTGGGTTATCTCACCATCT 58.276 45.455 0.00 0.00 38.79 2.90
2033 2541 3.327757 AGCTTTGTGAGTGGGTTATCTCA 59.672 43.478 0.00 0.00 38.20 3.27
2034 2542 3.686726 CAGCTTTGTGAGTGGGTTATCTC 59.313 47.826 0.00 0.00 0.00 2.75
2035 2543 3.327757 TCAGCTTTGTGAGTGGGTTATCT 59.672 43.478 0.00 0.00 0.00 1.98
2036 2544 3.674997 TCAGCTTTGTGAGTGGGTTATC 58.325 45.455 0.00 0.00 0.00 1.75
2037 2545 3.788227 TCAGCTTTGTGAGTGGGTTAT 57.212 42.857 0.00 0.00 0.00 1.89
2038 2546 3.788227 ATCAGCTTTGTGAGTGGGTTA 57.212 42.857 0.00 0.00 0.00 2.85
2039 2547 2.664402 ATCAGCTTTGTGAGTGGGTT 57.336 45.000 0.00 0.00 0.00 4.11
2040 2548 2.664402 AATCAGCTTTGTGAGTGGGT 57.336 45.000 0.00 0.00 0.00 4.51
2041 2549 2.886523 TGAAATCAGCTTTGTGAGTGGG 59.113 45.455 0.00 0.00 0.00 4.61
2042 2550 3.817084 TCTGAAATCAGCTTTGTGAGTGG 59.183 43.478 5.53 0.00 43.46 4.00
2043 2551 5.210715 GTTCTGAAATCAGCTTTGTGAGTG 58.789 41.667 5.53 0.00 43.46 3.51
2044 2552 4.883585 TGTTCTGAAATCAGCTTTGTGAGT 59.116 37.500 5.53 0.00 43.46 3.41
2045 2553 5.428496 TGTTCTGAAATCAGCTTTGTGAG 57.572 39.130 5.53 0.00 43.46 3.51
2046 2554 5.833406 TTGTTCTGAAATCAGCTTTGTGA 57.167 34.783 5.53 0.00 43.46 3.58
2047 2555 6.210796 TGATTGTTCTGAAATCAGCTTTGTG 58.789 36.000 5.53 0.00 43.46 3.33
2048 2556 6.395426 TGATTGTTCTGAAATCAGCTTTGT 57.605 33.333 5.53 0.00 43.46 2.83
2055 2563 5.384336 TGTTCCCTGATTGTTCTGAAATCA 58.616 37.500 5.05 5.05 40.77 2.57
2056 2564 5.964958 TGTTCCCTGATTGTTCTGAAATC 57.035 39.130 0.00 0.00 35.10 2.17
2057 2565 7.405292 TCTATGTTCCCTGATTGTTCTGAAAT 58.595 34.615 0.00 0.00 0.00 2.17
2058 2566 6.778821 TCTATGTTCCCTGATTGTTCTGAAA 58.221 36.000 0.00 0.00 0.00 2.69
2059 2567 6.373005 TCTATGTTCCCTGATTGTTCTGAA 57.627 37.500 0.00 0.00 0.00 3.02
2060 2568 6.173339 GTTCTATGTTCCCTGATTGTTCTGA 58.827 40.000 0.00 0.00 0.00 3.27
2061 2569 5.939883 TGTTCTATGTTCCCTGATTGTTCTG 59.060 40.000 0.00 0.00 0.00 3.02
2062 2570 5.940470 GTGTTCTATGTTCCCTGATTGTTCT 59.060 40.000 0.00 0.00 0.00 3.01
2063 2571 5.705441 TGTGTTCTATGTTCCCTGATTGTTC 59.295 40.000 0.00 0.00 0.00 3.18
2064 2572 5.630121 TGTGTTCTATGTTCCCTGATTGTT 58.370 37.500 0.00 0.00 0.00 2.83
2065 2573 5.241403 TGTGTTCTATGTTCCCTGATTGT 57.759 39.130 0.00 0.00 0.00 2.71
2066 2574 5.392380 GCTTGTGTTCTATGTTCCCTGATTG 60.392 44.000 0.00 0.00 0.00 2.67
2067 2575 4.702131 GCTTGTGTTCTATGTTCCCTGATT 59.298 41.667 0.00 0.00 0.00 2.57
2068 2576 4.263462 TGCTTGTGTTCTATGTTCCCTGAT 60.263 41.667 0.00 0.00 0.00 2.90
2069 2577 3.072330 TGCTTGTGTTCTATGTTCCCTGA 59.928 43.478 0.00 0.00 0.00 3.86
2070 2578 3.411446 TGCTTGTGTTCTATGTTCCCTG 58.589 45.455 0.00 0.00 0.00 4.45
2071 2579 3.788227 TGCTTGTGTTCTATGTTCCCT 57.212 42.857 0.00 0.00 0.00 4.20
2072 2580 3.821033 AGTTGCTTGTGTTCTATGTTCCC 59.179 43.478 0.00 0.00 0.00 3.97
2073 2581 5.389516 CGTAGTTGCTTGTGTTCTATGTTCC 60.390 44.000 0.00 0.00 0.00 3.62
2074 2582 5.609088 CGTAGTTGCTTGTGTTCTATGTTC 58.391 41.667 0.00 0.00 0.00 3.18
2075 2583 4.084013 GCGTAGTTGCTTGTGTTCTATGTT 60.084 41.667 0.00 0.00 0.00 2.71
2076 2584 3.432252 GCGTAGTTGCTTGTGTTCTATGT 59.568 43.478 0.00 0.00 0.00 2.29
2077 2585 3.431912 TGCGTAGTTGCTTGTGTTCTATG 59.568 43.478 0.00 0.00 35.36 2.23
2078 2586 3.659786 TGCGTAGTTGCTTGTGTTCTAT 58.340 40.909 0.00 0.00 35.36 1.98
2079 2587 3.100658 TGCGTAGTTGCTTGTGTTCTA 57.899 42.857 0.00 0.00 35.36 2.10
2080 2588 1.948104 TGCGTAGTTGCTTGTGTTCT 58.052 45.000 0.00 0.00 35.36 3.01
2081 2589 2.372350 GTTGCGTAGTTGCTTGTGTTC 58.628 47.619 0.00 0.00 35.36 3.18
2082 2590 1.064952 GGTTGCGTAGTTGCTTGTGTT 59.935 47.619 0.00 0.00 35.36 3.32
2083 2591 0.661020 GGTTGCGTAGTTGCTTGTGT 59.339 50.000 0.00 0.00 35.36 3.72
2084 2592 0.660488 TGGTTGCGTAGTTGCTTGTG 59.340 50.000 0.00 0.00 35.36 3.33
2085 2593 1.384525 TTGGTTGCGTAGTTGCTTGT 58.615 45.000 0.00 0.00 35.36 3.16
2086 2594 2.483583 TTTGGTTGCGTAGTTGCTTG 57.516 45.000 0.00 0.00 35.36 4.01
2087 2595 2.685897 TCTTTTGGTTGCGTAGTTGCTT 59.314 40.909 0.00 0.00 35.36 3.91
2088 2596 2.294074 TCTTTTGGTTGCGTAGTTGCT 58.706 42.857 0.00 0.00 35.36 3.91
2089 2597 2.766970 TCTTTTGGTTGCGTAGTTGC 57.233 45.000 0.00 0.00 0.00 4.17
2090 2598 5.623673 GTGTTATCTTTTGGTTGCGTAGTTG 59.376 40.000 0.00 0.00 0.00 3.16
2091 2599 5.297278 TGTGTTATCTTTTGGTTGCGTAGTT 59.703 36.000 0.00 0.00 0.00 2.24
2092 2600 4.817464 TGTGTTATCTTTTGGTTGCGTAGT 59.183 37.500 0.00 0.00 0.00 2.73
2093 2601 5.178623 TCTGTGTTATCTTTTGGTTGCGTAG 59.821 40.000 0.00 0.00 0.00 3.51
2094 2602 5.057819 TCTGTGTTATCTTTTGGTTGCGTA 58.942 37.500 0.00 0.00 0.00 4.42
2095 2603 3.880490 TCTGTGTTATCTTTTGGTTGCGT 59.120 39.130 0.00 0.00 0.00 5.24
2096 2604 4.481930 TCTGTGTTATCTTTTGGTTGCG 57.518 40.909 0.00 0.00 0.00 4.85
2097 2605 6.019075 GGTTTTCTGTGTTATCTTTTGGTTGC 60.019 38.462 0.00 0.00 0.00 4.17
2098 2606 7.222611 CAGGTTTTCTGTGTTATCTTTTGGTTG 59.777 37.037 0.00 0.00 38.64 3.77
2099 2607 7.264947 CAGGTTTTCTGTGTTATCTTTTGGTT 58.735 34.615 0.00 0.00 38.64 3.67
2100 2608 6.183360 CCAGGTTTTCTGTGTTATCTTTTGGT 60.183 38.462 0.00 0.00 41.83 3.67
2101 2609 6.215845 CCAGGTTTTCTGTGTTATCTTTTGG 58.784 40.000 0.00 0.00 41.83 3.28
2102 2610 6.040391 TCCCAGGTTTTCTGTGTTATCTTTTG 59.960 38.462 0.00 0.00 41.83 2.44
2103 2611 6.133356 TCCCAGGTTTTCTGTGTTATCTTTT 58.867 36.000 0.00 0.00 41.83 2.27
2104 2612 5.701224 TCCCAGGTTTTCTGTGTTATCTTT 58.299 37.500 0.00 0.00 41.83 2.52
2105 2613 5.319043 TCCCAGGTTTTCTGTGTTATCTT 57.681 39.130 0.00 0.00 41.83 2.40
2106 2614 4.993705 TCCCAGGTTTTCTGTGTTATCT 57.006 40.909 0.00 0.00 41.83 1.98
2107 2615 4.825085 TGTTCCCAGGTTTTCTGTGTTATC 59.175 41.667 0.00 0.00 41.83 1.75
2108 2616 4.583073 GTGTTCCCAGGTTTTCTGTGTTAT 59.417 41.667 0.00 0.00 41.83 1.89
2109 2617 3.949113 GTGTTCCCAGGTTTTCTGTGTTA 59.051 43.478 0.00 0.00 41.83 2.41
2110 2618 2.758423 GTGTTCCCAGGTTTTCTGTGTT 59.242 45.455 0.00 0.00 41.83 3.32
2111 2619 2.291282 TGTGTTCCCAGGTTTTCTGTGT 60.291 45.455 0.00 0.00 41.83 3.72
2112 2620 2.358898 CTGTGTTCCCAGGTTTTCTGTG 59.641 50.000 0.00 0.00 41.83 3.66
2113 2621 2.025321 ACTGTGTTCCCAGGTTTTCTGT 60.025 45.455 0.00 0.00 41.83 3.41
2114 2622 2.618709 GACTGTGTTCCCAGGTTTTCTG 59.381 50.000 0.00 0.00 43.00 3.02
2115 2623 2.241176 TGACTGTGTTCCCAGGTTTTCT 59.759 45.455 0.00 0.00 36.75 2.52
2116 2624 2.357952 GTGACTGTGTTCCCAGGTTTTC 59.642 50.000 0.00 0.00 36.75 2.29
2117 2625 2.291282 TGTGACTGTGTTCCCAGGTTTT 60.291 45.455 0.00 0.00 36.75 2.43
2118 2626 1.283613 TGTGACTGTGTTCCCAGGTTT 59.716 47.619 0.00 0.00 36.75 3.27
2119 2627 0.916086 TGTGACTGTGTTCCCAGGTT 59.084 50.000 0.00 0.00 36.75 3.50
2120 2628 0.180406 GTGTGACTGTGTTCCCAGGT 59.820 55.000 0.00 0.00 36.75 4.00
2121 2629 0.469917 AGTGTGACTGTGTTCCCAGG 59.530 55.000 0.00 0.00 36.75 4.45
2122 2630 2.755650 GTAGTGTGACTGTGTTCCCAG 58.244 52.381 0.00 0.00 38.45 4.45
2123 2631 1.067974 CGTAGTGTGACTGTGTTCCCA 59.932 52.381 0.00 0.00 0.00 4.37
2124 2632 1.779569 CGTAGTGTGACTGTGTTCCC 58.220 55.000 0.00 0.00 0.00 3.97
2125 2633 1.137513 GCGTAGTGTGACTGTGTTCC 58.862 55.000 0.00 0.00 0.00 3.62
2126 2634 1.137513 GGCGTAGTGTGACTGTGTTC 58.862 55.000 0.00 0.00 0.00 3.18
2127 2635 0.249741 GGGCGTAGTGTGACTGTGTT 60.250 55.000 0.00 0.00 0.00 3.32
2128 2636 1.113517 AGGGCGTAGTGTGACTGTGT 61.114 55.000 0.00 0.00 0.00 3.72
2129 2637 0.033504 AAGGGCGTAGTGTGACTGTG 59.966 55.000 0.00 0.00 0.00 3.66
2130 2638 0.756903 AAAGGGCGTAGTGTGACTGT 59.243 50.000 0.00 0.00 0.00 3.55
2131 2639 1.878953 AAAAGGGCGTAGTGTGACTG 58.121 50.000 0.00 0.00 0.00 3.51
2132 2640 2.632987 AAAAAGGGCGTAGTGTGACT 57.367 45.000 0.00 0.00 0.00 3.41
2150 2658 4.149598 GGGTCAGCCTCCTTTTCTAAAAA 58.850 43.478 0.00 0.00 34.45 1.94
2151 2659 3.499745 GGGGTCAGCCTCCTTTTCTAAAA 60.500 47.826 0.00 0.00 34.45 1.52
2152 2660 2.041216 GGGGTCAGCCTCCTTTTCTAAA 59.959 50.000 0.00 0.00 34.45 1.85
2153 2661 1.633945 GGGGTCAGCCTCCTTTTCTAA 59.366 52.381 0.00 0.00 34.45 2.10
2154 2662 1.286248 GGGGTCAGCCTCCTTTTCTA 58.714 55.000 0.00 0.00 34.45 2.10
2155 2663 2.079326 GGGGTCAGCCTCCTTTTCT 58.921 57.895 0.00 0.00 34.45 2.52
2156 2664 4.745116 GGGGTCAGCCTCCTTTTC 57.255 61.111 0.00 0.00 34.45 2.29
2171 2679 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
2172 2680 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
2173 2681 4.559063 CCCAGATGCAGAGGCCGG 62.559 72.222 0.00 0.00 40.13 6.13
2176 2684 3.472943 ATCGCCCAGATGCAGAGGC 62.473 63.158 8.59 8.59 42.18 4.70
2177 2685 2.827423 ATCGCCCAGATGCAGAGG 59.173 61.111 0.00 0.00 38.36 3.69
2184 2692 0.604780 GCTGTATGCATCGCCCAGAT 60.605 55.000 0.19 0.00 42.31 2.90
2185 2693 1.227645 GCTGTATGCATCGCCCAGA 60.228 57.895 0.19 0.00 42.31 3.86
2186 2694 2.256591 GGCTGTATGCATCGCCCAG 61.257 63.158 18.78 14.25 45.15 4.45
2187 2695 2.203195 GGCTGTATGCATCGCCCA 60.203 61.111 18.78 5.90 45.15 5.36
2188 2696 2.203195 TGGCTGTATGCATCGCCC 60.203 61.111 23.73 13.05 45.15 6.13
2189 2697 1.097547 AAGTGGCTGTATGCATCGCC 61.098 55.000 21.34 21.34 45.15 5.54
2190 2698 0.734889 AAAGTGGCTGTATGCATCGC 59.265 50.000 0.19 4.61 45.15 4.58
2191 2699 4.818534 AATAAAGTGGCTGTATGCATCG 57.181 40.909 0.19 0.00 45.15 3.84
2199 2707 9.461312 TGTGAGAATAATTAATAAAGTGGCTGT 57.539 29.630 0.00 0.00 0.00 4.40
2213 2721 9.574516 ACTTTGTAAGGTCTTGTGAGAATAATT 57.425 29.630 0.00 0.00 32.66 1.40
2214 2722 9.220767 GACTTTGTAAGGTCTTGTGAGAATAAT 57.779 33.333 0.23 0.00 32.66 1.28
2215 2723 8.208224 TGACTTTGTAAGGTCTTGTGAGAATAA 58.792 33.333 8.11 0.00 32.66 1.40
2216 2724 7.732025 TGACTTTGTAAGGTCTTGTGAGAATA 58.268 34.615 8.11 0.00 32.66 1.75
2217 2725 6.591935 TGACTTTGTAAGGTCTTGTGAGAAT 58.408 36.000 8.11 0.00 32.66 2.40
2218 2726 5.984725 TGACTTTGTAAGGTCTTGTGAGAA 58.015 37.500 8.11 0.00 32.66 2.87
2219 2727 5.607939 TGACTTTGTAAGGTCTTGTGAGA 57.392 39.130 8.11 0.00 34.01 3.27
2220 2728 6.929049 TGTATGACTTTGTAAGGTCTTGTGAG 59.071 38.462 8.11 0.00 34.01 3.51
2221 2729 6.822442 TGTATGACTTTGTAAGGTCTTGTGA 58.178 36.000 8.11 0.00 34.01 3.58
2222 2730 7.011950 TGTTGTATGACTTTGTAAGGTCTTGTG 59.988 37.037 8.11 0.00 34.01 3.33
2223 2731 7.051623 TGTTGTATGACTTTGTAAGGTCTTGT 58.948 34.615 8.11 0.00 34.01 3.16
2224 2732 7.226720 ACTGTTGTATGACTTTGTAAGGTCTTG 59.773 37.037 8.11 0.00 34.01 3.02
2225 2733 7.280356 ACTGTTGTATGACTTTGTAAGGTCTT 58.720 34.615 8.11 4.91 34.01 3.01
2226 2734 6.827727 ACTGTTGTATGACTTTGTAAGGTCT 58.172 36.000 8.11 0.00 34.01 3.85
2227 2735 8.597662 TTACTGTTGTATGACTTTGTAAGGTC 57.402 34.615 0.44 0.44 0.00 3.85
2228 2736 8.426489 TCTTACTGTTGTATGACTTTGTAAGGT 58.574 33.333 0.00 0.00 37.36 3.50
2229 2737 8.709646 GTCTTACTGTTGTATGACTTTGTAAGG 58.290 37.037 0.00 0.00 44.06 2.69
2238 2746 6.034683 CGGCTTTAGTCTTACTGTTGTATGAC 59.965 42.308 11.70 11.70 45.97 3.06
2239 2747 6.097356 CGGCTTTAGTCTTACTGTTGTATGA 58.903 40.000 0.00 0.00 32.61 2.15
2240 2748 5.220416 GCGGCTTTAGTCTTACTGTTGTATG 60.220 44.000 0.00 0.00 0.00 2.39
2241 2749 4.868734 GCGGCTTTAGTCTTACTGTTGTAT 59.131 41.667 0.00 0.00 0.00 2.29
2242 2750 4.240096 GCGGCTTTAGTCTTACTGTTGTA 58.760 43.478 0.00 0.00 0.00 2.41
2243 2751 3.064931 GCGGCTTTAGTCTTACTGTTGT 58.935 45.455 0.00 0.00 0.00 3.32
2244 2752 2.415512 GGCGGCTTTAGTCTTACTGTTG 59.584 50.000 0.00 0.00 0.00 3.33
2245 2753 2.038033 TGGCGGCTTTAGTCTTACTGTT 59.962 45.455 11.43 0.00 0.00 3.16
2246 2754 1.621814 TGGCGGCTTTAGTCTTACTGT 59.378 47.619 11.43 0.00 0.00 3.55
2247 2755 2.380084 TGGCGGCTTTAGTCTTACTG 57.620 50.000 11.43 0.00 0.00 2.74
2248 2756 2.766828 AGATGGCGGCTTTAGTCTTACT 59.233 45.455 11.43 0.00 0.00 2.24
2249 2757 3.180891 AGATGGCGGCTTTAGTCTTAC 57.819 47.619 11.43 0.00 0.00 2.34
2250 2758 4.739735 GCTTAGATGGCGGCTTTAGTCTTA 60.740 45.833 11.43 0.00 0.00 2.10
2251 2759 3.798202 CTTAGATGGCGGCTTTAGTCTT 58.202 45.455 11.43 0.00 0.00 3.01
2252 2760 2.483889 GCTTAGATGGCGGCTTTAGTCT 60.484 50.000 11.43 8.37 0.00 3.24
2253 2761 1.867865 GCTTAGATGGCGGCTTTAGTC 59.132 52.381 11.43 0.78 0.00 2.59
2254 2762 1.209504 TGCTTAGATGGCGGCTTTAGT 59.790 47.619 11.43 0.00 0.00 2.24
2255 2763 1.953559 TGCTTAGATGGCGGCTTTAG 58.046 50.000 11.43 4.57 0.00 1.85
2256 2764 2.014128 GTTGCTTAGATGGCGGCTTTA 58.986 47.619 11.43 0.00 0.00 1.85
2257 2765 0.811281 GTTGCTTAGATGGCGGCTTT 59.189 50.000 11.43 0.00 0.00 3.51
2258 2766 0.322456 TGTTGCTTAGATGGCGGCTT 60.322 50.000 11.43 3.03 0.00 4.35
2259 2767 0.322456 TTGTTGCTTAGATGGCGGCT 60.322 50.000 11.43 0.00 0.00 5.52
2260 2768 0.099436 CTTGTTGCTTAGATGGCGGC 59.901 55.000 0.00 0.00 0.00 6.53
2261 2769 0.099436 GCTTGTTGCTTAGATGGCGG 59.901 55.000 0.00 0.00 38.95 6.13
2262 2770 3.611433 GCTTGTTGCTTAGATGGCG 57.389 52.632 0.00 0.00 38.95 5.69
2280 2788 2.025155 ACTGGATAGGTGTAGCGACAG 58.975 52.381 0.00 0.00 35.82 3.51
2281 2789 2.139323 ACTGGATAGGTGTAGCGACA 57.861 50.000 0.00 0.00 0.00 4.35
2282 2790 2.426024 TCAACTGGATAGGTGTAGCGAC 59.574 50.000 0.00 0.00 42.42 5.19
2283 2791 2.730382 TCAACTGGATAGGTGTAGCGA 58.270 47.619 0.00 0.00 42.42 4.93
2284 2792 3.068165 TCATCAACTGGATAGGTGTAGCG 59.932 47.826 0.00 0.00 42.42 4.26
2285 2793 4.672587 TCATCAACTGGATAGGTGTAGC 57.327 45.455 0.00 0.00 42.42 3.58
2286 2794 5.453903 CCCTTCATCAACTGGATAGGTGTAG 60.454 48.000 0.00 0.00 42.42 2.74
2287 2795 4.408921 CCCTTCATCAACTGGATAGGTGTA 59.591 45.833 0.00 0.00 42.42 2.90
2288 2796 3.200825 CCCTTCATCAACTGGATAGGTGT 59.799 47.826 0.00 0.00 42.42 4.16
2289 2797 3.434167 CCCCTTCATCAACTGGATAGGTG 60.434 52.174 0.00 0.00 43.21 4.00
2290 2798 2.780010 CCCCTTCATCAACTGGATAGGT 59.220 50.000 0.00 0.00 32.05 3.08
2291 2799 2.487986 GCCCCTTCATCAACTGGATAGG 60.488 54.545 0.00 0.00 33.95 2.57
2292 2800 2.808202 CGCCCCTTCATCAACTGGATAG 60.808 54.545 0.00 0.00 33.95 2.08
2293 2801 1.140852 CGCCCCTTCATCAACTGGATA 59.859 52.381 0.00 0.00 33.95 2.59
2294 2802 0.107017 CGCCCCTTCATCAACTGGAT 60.107 55.000 0.00 0.00 36.39 3.41
2295 2803 1.299648 CGCCCCTTCATCAACTGGA 59.700 57.895 0.00 0.00 0.00 3.86
2296 2804 2.409870 GCGCCCCTTCATCAACTGG 61.410 63.158 0.00 0.00 0.00 4.00
2297 2805 1.651240 CTGCGCCCCTTCATCAACTG 61.651 60.000 4.18 0.00 0.00 3.16
2298 2806 1.377725 CTGCGCCCCTTCATCAACT 60.378 57.895 4.18 0.00 0.00 3.16
2299 2807 0.749454 ATCTGCGCCCCTTCATCAAC 60.749 55.000 4.18 0.00 0.00 3.18
2300 2808 0.836606 TATCTGCGCCCCTTCATCAA 59.163 50.000 4.18 0.00 0.00 2.57
2301 2809 0.394192 CTATCTGCGCCCCTTCATCA 59.606 55.000 4.18 0.00 0.00 3.07
2302 2810 0.952984 GCTATCTGCGCCCCTTCATC 60.953 60.000 4.18 0.00 0.00 2.92
2303 2811 1.072159 GCTATCTGCGCCCCTTCAT 59.928 57.895 4.18 0.00 0.00 2.57
2304 2812 2.505982 GCTATCTGCGCCCCTTCA 59.494 61.111 4.18 0.00 0.00 3.02
2305 2813 2.281139 GGCTATCTGCGCCCCTTC 60.281 66.667 4.18 0.00 44.05 3.46
2312 2820 1.758440 TTAGGCCCAGGCTATCTGCG 61.758 60.000 8.89 0.00 40.30 5.18
2313 2821 0.695347 ATTAGGCCCAGGCTATCTGC 59.305 55.000 8.89 0.00 40.30 4.26
2314 2822 2.237392 GGTATTAGGCCCAGGCTATCTG 59.763 54.545 8.89 0.00 40.30 2.90
2315 2823 2.158004 TGGTATTAGGCCCAGGCTATCT 60.158 50.000 8.89 0.00 40.30 1.98
2316 2824 2.266279 TGGTATTAGGCCCAGGCTATC 58.734 52.381 8.89 0.00 40.30 2.08
2317 2825 2.433444 TGGTATTAGGCCCAGGCTAT 57.567 50.000 8.89 0.32 40.30 2.97
2318 2826 2.173996 GTTTGGTATTAGGCCCAGGCTA 59.826 50.000 8.89 0.00 39.70 3.93
2319 2827 1.063942 GTTTGGTATTAGGCCCAGGCT 60.064 52.381 8.89 0.35 42.39 4.58
2320 2828 1.341581 TGTTTGGTATTAGGCCCAGGC 60.342 52.381 0.00 0.00 41.06 4.85
2321 2829 2.241176 TCTGTTTGGTATTAGGCCCAGG 59.759 50.000 0.00 0.00 31.04 4.45
2322 2830 3.279434 GTCTGTTTGGTATTAGGCCCAG 58.721 50.000 0.00 0.00 31.04 4.45
2323 2831 2.645297 TGTCTGTTTGGTATTAGGCCCA 59.355 45.455 0.00 0.00 0.00 5.36
2324 2832 3.359695 TGTCTGTTTGGTATTAGGCCC 57.640 47.619 0.00 0.00 0.00 5.80
2325 2833 3.560068 CGATGTCTGTTTGGTATTAGGCC 59.440 47.826 0.00 0.00 0.00 5.19
2326 2834 3.002348 GCGATGTCTGTTTGGTATTAGGC 59.998 47.826 0.00 0.00 0.00 3.93
2327 2835 4.188462 TGCGATGTCTGTTTGGTATTAGG 58.812 43.478 0.00 0.00 0.00 2.69
2328 2836 4.260375 GCTGCGATGTCTGTTTGGTATTAG 60.260 45.833 0.00 0.00 0.00 1.73
2329 2837 3.621268 GCTGCGATGTCTGTTTGGTATTA 59.379 43.478 0.00 0.00 0.00 0.98
2330 2838 2.420022 GCTGCGATGTCTGTTTGGTATT 59.580 45.455 0.00 0.00 0.00 1.89
2331 2839 2.009774 GCTGCGATGTCTGTTTGGTAT 58.990 47.619 0.00 0.00 0.00 2.73
2332 2840 1.438651 GCTGCGATGTCTGTTTGGTA 58.561 50.000 0.00 0.00 0.00 3.25
2333 2841 1.237285 GGCTGCGATGTCTGTTTGGT 61.237 55.000 0.00 0.00 0.00 3.67
2334 2842 1.236616 TGGCTGCGATGTCTGTTTGG 61.237 55.000 0.00 0.00 0.00 3.28
2335 2843 0.592637 TTGGCTGCGATGTCTGTTTG 59.407 50.000 0.00 0.00 0.00 2.93
2336 2844 0.877071 CTTGGCTGCGATGTCTGTTT 59.123 50.000 0.00 0.00 0.00 2.83
2337 2845 1.580845 GCTTGGCTGCGATGTCTGTT 61.581 55.000 0.00 0.00 0.00 3.16
2338 2846 2.037136 GCTTGGCTGCGATGTCTGT 61.037 57.895 0.00 0.00 0.00 3.41
2339 2847 2.758089 GGCTTGGCTGCGATGTCTG 61.758 63.158 0.00 0.00 0.00 3.51
2340 2848 1.617018 TAGGCTTGGCTGCGATGTCT 61.617 55.000 9.40 9.40 0.00 3.41
2341 2849 0.744414 TTAGGCTTGGCTGCGATGTC 60.744 55.000 6.97 0.00 0.00 3.06
2342 2850 1.026718 GTTAGGCTTGGCTGCGATGT 61.027 55.000 6.97 0.00 0.00 3.06
2343 2851 1.026182 TGTTAGGCTTGGCTGCGATG 61.026 55.000 6.97 0.00 0.00 3.84
2344 2852 0.107017 ATGTTAGGCTTGGCTGCGAT 60.107 50.000 6.97 0.00 0.00 4.58
2345 2853 0.744414 GATGTTAGGCTTGGCTGCGA 60.744 55.000 6.97 0.00 0.00 5.10
2346 2854 0.745845 AGATGTTAGGCTTGGCTGCG 60.746 55.000 6.97 0.00 0.00 5.18
2347 2855 2.332063 TAGATGTTAGGCTTGGCTGC 57.668 50.000 6.97 0.00 0.00 5.25
2348 2856 3.873952 GTCTTAGATGTTAGGCTTGGCTG 59.126 47.826 6.97 0.00 0.00 4.85
2349 2857 3.118223 GGTCTTAGATGTTAGGCTTGGCT 60.118 47.826 0.00 1.64 0.00 4.75
2350 2858 3.118223 AGGTCTTAGATGTTAGGCTTGGC 60.118 47.826 0.00 0.00 0.00 4.52
2351 2859 4.762289 AGGTCTTAGATGTTAGGCTTGG 57.238 45.455 0.00 0.00 0.00 3.61
2352 2860 6.981559 GTCTTAGGTCTTAGATGTTAGGCTTG 59.018 42.308 0.00 0.00 0.00 4.01
2353 2861 6.098552 GGTCTTAGGTCTTAGATGTTAGGCTT 59.901 42.308 0.00 0.00 0.00 4.35
2354 2862 5.599242 GGTCTTAGGTCTTAGATGTTAGGCT 59.401 44.000 0.00 0.00 0.00 4.58
2355 2863 5.221481 GGGTCTTAGGTCTTAGATGTTAGGC 60.221 48.000 0.00 0.00 0.00 3.93
2356 2864 5.304871 GGGGTCTTAGGTCTTAGATGTTAGG 59.695 48.000 0.00 0.00 0.00 2.69
2357 2865 5.897824 TGGGGTCTTAGGTCTTAGATGTTAG 59.102 44.000 0.00 0.00 0.00 2.34
2358 2866 5.845734 TGGGGTCTTAGGTCTTAGATGTTA 58.154 41.667 0.00 0.00 0.00 2.41
2359 2867 4.695606 TGGGGTCTTAGGTCTTAGATGTT 58.304 43.478 0.00 0.00 0.00 2.71
2360 2868 4.348020 TGGGGTCTTAGGTCTTAGATGT 57.652 45.455 0.00 0.00 0.00 3.06
2361 2869 4.141688 GGTTGGGGTCTTAGGTCTTAGATG 60.142 50.000 0.00 0.00 0.00 2.90
2362 2870 4.038633 GGTTGGGGTCTTAGGTCTTAGAT 58.961 47.826 0.00 0.00 0.00 1.98
2363 2871 3.078612 AGGTTGGGGTCTTAGGTCTTAGA 59.921 47.826 0.00 0.00 0.00 2.10
2364 2872 3.451890 AGGTTGGGGTCTTAGGTCTTAG 58.548 50.000 0.00 0.00 0.00 2.18
2365 2873 3.572661 AGGTTGGGGTCTTAGGTCTTA 57.427 47.619 0.00 0.00 0.00 2.10
2366 2874 2.435203 AGGTTGGGGTCTTAGGTCTT 57.565 50.000 0.00 0.00 0.00 3.01
2367 2875 2.893153 GCTAGGTTGGGGTCTTAGGTCT 60.893 54.545 0.00 0.00 0.00 3.85
2368 2876 1.485480 GCTAGGTTGGGGTCTTAGGTC 59.515 57.143 0.00 0.00 0.00 3.85
2369 2877 1.581223 GCTAGGTTGGGGTCTTAGGT 58.419 55.000 0.00 0.00 0.00 3.08
2370 2878 0.837940 GGCTAGGTTGGGGTCTTAGG 59.162 60.000 0.00 0.00 0.00 2.69
2371 2879 1.209747 GTGGCTAGGTTGGGGTCTTAG 59.790 57.143 0.00 0.00 0.00 2.18
2372 2880 1.203389 AGTGGCTAGGTTGGGGTCTTA 60.203 52.381 0.00 0.00 0.00 2.10
2373 2881 0.475828 AGTGGCTAGGTTGGGGTCTT 60.476 55.000 0.00 0.00 0.00 3.01
2374 2882 0.475828 AAGTGGCTAGGTTGGGGTCT 60.476 55.000 0.00 0.00 0.00 3.85
2375 2883 0.322546 CAAGTGGCTAGGTTGGGGTC 60.323 60.000 0.00 0.00 0.00 4.46
2376 2884 1.767692 CAAGTGGCTAGGTTGGGGT 59.232 57.895 0.00 0.00 0.00 4.95
2377 2885 1.678970 GCAAGTGGCTAGGTTGGGG 60.679 63.158 0.00 0.00 40.25 4.96
2378 2886 1.678970 GGCAAGTGGCTAGGTTGGG 60.679 63.158 0.00 0.00 44.01 4.12
2379 2887 2.040544 CGGCAAGTGGCTAGGTTGG 61.041 63.158 3.18 0.00 44.01 3.77
2380 2888 2.040544 CCGGCAAGTGGCTAGGTTG 61.041 63.158 3.18 0.00 44.01 3.77
2381 2889 2.351276 CCGGCAAGTGGCTAGGTT 59.649 61.111 3.18 0.00 44.01 3.50
2382 2890 3.717294 CCCGGCAAGTGGCTAGGT 61.717 66.667 0.00 0.00 44.01 3.08
2383 2891 3.682292 GACCCGGCAAGTGGCTAGG 62.682 68.421 0.00 6.31 44.01 3.02
2384 2892 2.125106 GACCCGGCAAGTGGCTAG 60.125 66.667 0.00 0.00 44.01 3.42
2385 2893 2.606519 AGACCCGGCAAGTGGCTA 60.607 61.111 0.00 0.00 44.01 3.93
2386 2894 4.335647 CAGACCCGGCAAGTGGCT 62.336 66.667 0.00 0.00 44.01 4.75
2388 2896 4.722700 CCCAGACCCGGCAAGTGG 62.723 72.222 0.00 0.00 0.00 4.00
2389 2897 4.722700 CCCCAGACCCGGCAAGTG 62.723 72.222 0.00 0.00 0.00 3.16
2397 2905 3.570212 AGTGTGTGCCCCAGACCC 61.570 66.667 0.00 0.00 38.07 4.46
2398 2906 2.281761 CAGTGTGTGCCCCAGACC 60.282 66.667 0.00 0.00 38.07 3.85
2399 2907 2.281761 CCAGTGTGTGCCCCAGAC 60.282 66.667 0.00 0.00 37.60 3.51
2400 2908 2.772191 ACCAGTGTGTGCCCCAGA 60.772 61.111 0.00 0.00 0.00 3.86
2401 2909 2.281761 GACCAGTGTGTGCCCCAG 60.282 66.667 0.00 0.00 0.00 4.45
2402 2910 3.884774 GGACCAGTGTGTGCCCCA 61.885 66.667 0.00 0.00 0.00 4.96
2407 2915 4.602259 ACGCCGGACCAGTGTGTG 62.602 66.667 5.05 0.00 0.00 3.82
2408 2916 4.602259 CACGCCGGACCAGTGTGT 62.602 66.667 5.05 0.13 40.14 3.72
2413 2921 4.803426 GAGAGCACGCCGGACCAG 62.803 72.222 5.05 0.00 0.00 4.00
2415 2923 4.803426 CTGAGAGCACGCCGGACC 62.803 72.222 5.05 0.00 0.00 4.46
2416 2924 3.691744 CTCTGAGAGCACGCCGGAC 62.692 68.421 5.05 0.00 0.00 4.79
2417 2925 3.443925 CTCTGAGAGCACGCCGGA 61.444 66.667 5.05 0.00 0.00 5.14
2418 2926 4.504916 CCTCTGAGAGCACGCCGG 62.505 72.222 6.17 0.00 0.00 6.13
2420 2928 4.828925 GGCCTCTGAGAGCACGCC 62.829 72.222 11.55 11.55 30.17 5.68
2423 2931 4.828925 GGCGGCCTCTGAGAGCAC 62.829 72.222 12.87 0.00 0.00 4.40
2440 2948 4.781959 CAATGGCAGTTGGCGGCG 62.782 66.667 0.51 0.51 46.16 6.46
2442 2950 3.346631 GAGCAATGGCAGTTGGCGG 62.347 63.158 0.00 0.00 46.16 6.13
2443 2951 2.180017 GAGCAATGGCAGTTGGCG 59.820 61.111 0.00 0.00 46.16 5.69
2444 2952 1.610554 ATGGAGCAATGGCAGTTGGC 61.611 55.000 0.00 0.00 44.61 4.52
2445 2953 0.458669 GATGGAGCAATGGCAGTTGG 59.541 55.000 0.00 0.00 44.61 3.77
2446 2954 1.471119 AGATGGAGCAATGGCAGTTG 58.529 50.000 0.00 0.00 44.61 3.16
2447 2955 2.097825 GAAGATGGAGCAATGGCAGTT 58.902 47.619 0.00 0.00 44.61 3.16
2448 2956 1.005097 TGAAGATGGAGCAATGGCAGT 59.995 47.619 0.00 0.00 44.61 4.40
2449 2957 1.676529 CTGAAGATGGAGCAATGGCAG 59.323 52.381 0.00 0.00 44.61 4.85
2450 2958 1.282738 TCTGAAGATGGAGCAATGGCA 59.717 47.619 0.00 0.00 44.61 4.92
2451 2959 2.048444 TCTGAAGATGGAGCAATGGC 57.952 50.000 0.00 0.00 41.61 4.40
2452 2960 3.618351 AGTTCTGAAGATGGAGCAATGG 58.382 45.455 0.00 0.00 0.00 3.16
2453 2961 7.171167 CAGTATAGTTCTGAAGATGGAGCAATG 59.829 40.741 0.00 0.00 35.20 2.82
2454 2962 7.215789 CAGTATAGTTCTGAAGATGGAGCAAT 58.784 38.462 0.00 0.00 35.20 3.56
2455 2963 6.577103 CAGTATAGTTCTGAAGATGGAGCAA 58.423 40.000 0.00 0.00 35.20 3.91
2456 2964 6.154203 CAGTATAGTTCTGAAGATGGAGCA 57.846 41.667 0.00 0.00 35.20 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.