Multiple sequence alignment - TraesCS5D01G426600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G426600 chr5D 100.000 3072 0 0 1 3072 485059340 485056269 0.000000e+00 5674.0
1 TraesCS5D01G426600 chr5D 80.475 1178 191 26 62 1221 77017252 77016096 0.000000e+00 865.0
2 TraesCS5D01G426600 chr5D 95.349 86 4 0 1392 1477 526139261 526139176 1.490000e-28 137.0
3 TraesCS5D01G426600 chr5B 95.330 1392 56 6 1 1385 596224865 596226254 0.000000e+00 2202.0
4 TraesCS5D01G426600 chr5B 95.248 1389 57 5 1 1385 596394571 596395954 0.000000e+00 2191.0
5 TraesCS5D01G426600 chr5B 94.804 1405 52 7 1 1385 596823783 596822380 0.000000e+00 2170.0
6 TraesCS5D01G426600 chr5B 92.420 1438 79 13 1475 2902 596822381 596820964 0.000000e+00 2025.0
7 TraesCS5D01G426600 chr5B 91.766 1433 80 16 1475 2899 596226253 596227655 0.000000e+00 1958.0
8 TraesCS5D01G426600 chr5B 89.314 1516 124 19 1475 2980 596395953 596397440 0.000000e+00 1868.0
9 TraesCS5D01G426600 chr5B 81.619 1186 200 14 2 1175 280604849 280603670 0.000000e+00 966.0
10 TraesCS5D01G426600 chr5B 83.167 600 93 5 590 1184 85946172 85945576 2.690000e-150 542.0
11 TraesCS5D01G426600 chr5B 79.376 417 69 7 1681 2093 280603530 280603127 8.390000e-71 278.0
12 TraesCS5D01G426600 chr5B 97.895 95 2 0 2977 3071 596812607 596812513 6.810000e-37 165.0
13 TraesCS5D01G426600 chr5B 95.652 46 2 0 2977 3022 596228599 596228644 1.180000e-09 75.0
14 TraesCS5D01G426600 chr5B 92.308 52 4 0 2977 3028 596820023 596819972 1.180000e-09 75.0
15 TraesCS5D01G426600 chr5B 97.143 35 1 0 2945 2979 596227847 596227881 3.310000e-05 60.2
16 TraesCS5D01G426600 chr5B 97.143 35 1 0 2945 2979 596820775 596820741 3.310000e-05 60.2
17 TraesCS5D01G426600 chr5A 95.231 1384 58 5 1 1376 606352163 606350780 0.000000e+00 2183.0
18 TraesCS5D01G426600 chr5A 91.123 721 56 4 1483 2199 606350658 606349942 0.000000e+00 970.0
19 TraesCS5D01G426600 chr5A 86.044 781 72 21 2198 2953 606349838 606349070 0.000000e+00 804.0
20 TraesCS5D01G426600 chr5A 78.293 1230 232 26 11 1221 329994094 329992881 0.000000e+00 760.0
21 TraesCS5D01G426600 chr7A 80.820 1220 215 12 2 1210 2958203 2956992 0.000000e+00 939.0
22 TraesCS5D01G426600 chr7A 77.676 327 62 7 1681 2003 3141191 3141510 4.040000e-44 189.0
23 TraesCS5D01G426600 chr7A 93.750 96 5 1 1386 1481 61816012 61815918 3.190000e-30 143.0
24 TraesCS5D01G426600 chr4A 80.148 1219 218 19 2 1206 733992005 733993213 0.000000e+00 889.0
25 TraesCS5D01G426600 chr4A 79.901 1214 230 12 2 1206 741160947 741162155 0.000000e+00 878.0
26 TraesCS5D01G426600 chr4A 78.061 392 71 10 1685 2068 713503219 713502835 1.840000e-57 233.0
27 TraesCS5D01G426600 chr4A 76.359 368 71 13 1708 2068 733869601 733869243 1.880000e-42 183.0
28 TraesCS5D01G426600 chr4A 78.947 266 47 2 1708 1973 741162664 741162920 4.070000e-39 172.0
29 TraesCS5D01G426600 chr6D 94.898 98 5 0 1386 1483 200398804 200398707 1.480000e-33 154.0
30 TraesCS5D01G426600 chr2D 94.565 92 5 0 1386 1477 445894974 445894883 3.190000e-30 143.0
31 TraesCS5D01G426600 chr7B 93.478 92 6 0 1386 1477 192854254 192854163 1.490000e-28 137.0
32 TraesCS5D01G426600 chr7B 90.909 99 8 1 1386 1484 508189475 508189378 6.910000e-27 132.0
33 TraesCS5D01G426600 chr7B 86.325 117 12 4 1363 1476 113199761 113199876 1.160000e-24 124.0
34 TraesCS5D01G426600 chr7B 86.842 114 12 3 1366 1476 117060721 117060608 1.160000e-24 124.0
35 TraesCS5D01G426600 chr2B 91.753 97 8 0 1386 1482 63293181 63293085 5.340000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G426600 chr5D 485056269 485059340 3071 True 5674.00 5674 100.000000 1 3072 1 chr5D.!!$R2 3071
1 TraesCS5D01G426600 chr5D 77016096 77017252 1156 True 865.00 865 80.475000 62 1221 1 chr5D.!!$R1 1159
2 TraesCS5D01G426600 chr5B 596394571 596397440 2869 False 2029.50 2191 92.281000 1 2980 2 chr5B.!!$F2 2979
3 TraesCS5D01G426600 chr5B 596819972 596823783 3811 True 1082.55 2170 94.168750 1 3028 4 chr5B.!!$R4 3027
4 TraesCS5D01G426600 chr5B 596224865 596228644 3779 False 1073.80 2202 94.972750 1 3022 4 chr5B.!!$F1 3021
5 TraesCS5D01G426600 chr5B 280603127 280604849 1722 True 622.00 966 80.497500 2 2093 2 chr5B.!!$R3 2091
6 TraesCS5D01G426600 chr5B 85945576 85946172 596 True 542.00 542 83.167000 590 1184 1 chr5B.!!$R1 594
7 TraesCS5D01G426600 chr5A 606349070 606352163 3093 True 1319.00 2183 90.799333 1 2953 3 chr5A.!!$R2 2952
8 TraesCS5D01G426600 chr5A 329992881 329994094 1213 True 760.00 760 78.293000 11 1221 1 chr5A.!!$R1 1210
9 TraesCS5D01G426600 chr7A 2956992 2958203 1211 True 939.00 939 80.820000 2 1210 1 chr7A.!!$R1 1208
10 TraesCS5D01G426600 chr4A 733992005 733993213 1208 False 889.00 889 80.148000 2 1206 1 chr4A.!!$F1 1204
11 TraesCS5D01G426600 chr4A 741160947 741162920 1973 False 525.00 878 79.424000 2 1973 2 chr4A.!!$F2 1971

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 299 0.469917 AAGGTAGCATCCCACCATCG 59.530 55.0 0.00 0.0 37.28 3.84 F
1550 2000 0.620556 ACTCTCCCGGATGCAAATGT 59.379 50.0 0.73 0.0 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1783 2237 0.250467 CACCCGGATGATGTCCCATC 60.250 60.0 0.73 0.0 44.77 3.51 R
3043 4530 0.178975 AGGTGCTCTCCCTATCTCCG 60.179 60.0 0.00 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 220 7.835682 TGATAATTCATTTCCTGGTGTCATTCT 59.164 33.333 0.00 0.00 0.00 2.40
228 236 0.898320 TTCTGAGTCAGCTAGGTGGC 59.102 55.000 18.68 18.68 0.00 5.01
291 299 0.469917 AAGGTAGCATCCCACCATCG 59.530 55.000 0.00 0.00 37.28 3.84
302 310 1.154413 CACCATCGTTTCAGCGCAC 60.154 57.895 11.47 0.00 0.00 5.34
409 417 5.185454 TCGAATGGTTCATGCAGAATAAGT 58.815 37.500 0.00 0.00 38.76 2.24
515 526 8.882415 TTACTAGCTATAATACCTGTTGTTGC 57.118 34.615 0.00 0.00 0.00 4.17
641 661 7.805163 TGGAACTTTCATGGAGATATGTACAT 58.195 34.615 13.93 13.93 0.00 2.29
651 671 7.263100 TGGAGATATGTACATGCAAATTGTC 57.737 36.000 18.81 5.19 0.00 3.18
1094 1115 2.222007 AGAGCACGCATCTCTGATTC 57.778 50.000 1.53 0.00 39.29 2.52
1104 1125 4.387598 GCATCTCTGATTCTGGTATTGCT 58.612 43.478 0.00 0.00 0.00 3.91
1108 1129 7.519649 GCATCTCTGATTCTGGTATTGCTAAAC 60.520 40.741 0.00 0.00 0.00 2.01
1147 1170 1.044790 AAACTGCACAAGGCTTGCCT 61.045 50.000 26.45 8.56 45.15 4.75
1403 1849 9.720769 ATTATATACTCCGTCCCAAAATAAGTG 57.279 33.333 0.00 0.00 0.00 3.16
1404 1850 3.782656 ACTCCGTCCCAAAATAAGTGT 57.217 42.857 0.00 0.00 0.00 3.55
1405 1851 3.671716 ACTCCGTCCCAAAATAAGTGTC 58.328 45.455 0.00 0.00 0.00 3.67
1406 1852 3.326880 ACTCCGTCCCAAAATAAGTGTCT 59.673 43.478 0.00 0.00 0.00 3.41
1407 1853 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
1408 1854 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
1409 1855 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
1410 1856 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
1411 1857 4.083484 CGTCCCAAAATAAGTGTCTCAACC 60.083 45.833 0.00 0.00 0.00 3.77
1412 1858 5.070685 GTCCCAAAATAAGTGTCTCAACCT 58.929 41.667 0.00 0.00 0.00 3.50
1413 1859 5.535030 GTCCCAAAATAAGTGTCTCAACCTT 59.465 40.000 0.00 0.00 0.00 3.50
1414 1860 6.713450 GTCCCAAAATAAGTGTCTCAACCTTA 59.287 38.462 0.00 0.00 0.00 2.69
1415 1861 6.940298 TCCCAAAATAAGTGTCTCAACCTTAG 59.060 38.462 0.00 0.00 0.00 2.18
1416 1862 6.715264 CCCAAAATAAGTGTCTCAACCTTAGT 59.285 38.462 0.00 0.00 0.00 2.24
1417 1863 7.881232 CCCAAAATAAGTGTCTCAACCTTAGTA 59.119 37.037 0.00 0.00 0.00 1.82
1418 1864 8.718734 CCAAAATAAGTGTCTCAACCTTAGTAC 58.281 37.037 0.00 0.00 0.00 2.73
1419 1865 9.268268 CAAAATAAGTGTCTCAACCTTAGTACA 57.732 33.333 0.00 0.00 0.00 2.90
1420 1866 9.841295 AAAATAAGTGTCTCAACCTTAGTACAA 57.159 29.630 0.00 0.00 0.00 2.41
1421 1867 8.828688 AATAAGTGTCTCAACCTTAGTACAAC 57.171 34.615 0.00 0.00 0.00 3.32
1422 1868 6.481434 AAGTGTCTCAACCTTAGTACAACT 57.519 37.500 0.00 0.00 0.00 3.16
1423 1869 6.481434 AGTGTCTCAACCTTAGTACAACTT 57.519 37.500 0.00 0.00 0.00 2.66
1424 1870 6.885922 AGTGTCTCAACCTTAGTACAACTTT 58.114 36.000 0.00 0.00 0.00 2.66
1425 1871 6.761714 AGTGTCTCAACCTTAGTACAACTTTG 59.238 38.462 0.00 0.00 0.00 2.77
1426 1872 6.537660 GTGTCTCAACCTTAGTACAACTTTGT 59.462 38.462 0.00 0.00 44.86 2.83
1427 1873 7.707893 GTGTCTCAACCTTAGTACAACTTTGTA 59.292 37.037 0.00 0.00 42.35 2.41
1448 1894 5.463061 TGTACGGAAGTTAGTACAAAGTTGC 59.537 40.000 16.76 0.00 46.79 4.17
1449 1895 4.048820 CGGAAGTTAGTACAAAGTTGCG 57.951 45.455 0.00 4.17 43.73 4.85
1451 1897 5.015067 GGAAGTTAGTACAAAGTTGCGAC 57.985 43.478 0.00 0.00 0.00 5.19
1452 1898 4.508861 GGAAGTTAGTACAAAGTTGCGACA 59.491 41.667 6.90 0.00 0.00 4.35
1453 1899 5.399604 AAGTTAGTACAAAGTTGCGACAC 57.600 39.130 6.90 0.00 0.00 3.67
1454 1900 4.690122 AGTTAGTACAAAGTTGCGACACT 58.310 39.130 6.90 3.07 0.00 3.55
1455 1901 5.114081 AGTTAGTACAAAGTTGCGACACTT 58.886 37.500 6.90 0.00 38.74 3.16
1456 1902 6.275335 AGTTAGTACAAAGTTGCGACACTTA 58.725 36.000 6.90 0.00 35.87 2.24
1457 1903 6.927381 AGTTAGTACAAAGTTGCGACACTTAT 59.073 34.615 6.90 0.00 35.87 1.73
1458 1904 7.440255 AGTTAGTACAAAGTTGCGACACTTATT 59.560 33.333 6.90 0.00 35.87 1.40
1459 1905 6.613755 AGTACAAAGTTGCGACACTTATTT 57.386 33.333 6.90 0.00 35.87 1.40
1460 1906 7.023197 AGTACAAAGTTGCGACACTTATTTT 57.977 32.000 6.90 0.00 35.87 1.82
1461 1907 8.145316 AGTACAAAGTTGCGACACTTATTTTA 57.855 30.769 6.90 0.00 35.87 1.52
1462 1908 8.614346 AGTACAAAGTTGCGACACTTATTTTAA 58.386 29.630 6.90 0.00 35.87 1.52
1463 1909 7.908193 ACAAAGTTGCGACACTTATTTTAAG 57.092 32.000 6.90 0.00 35.87 1.85
1464 1910 7.699566 ACAAAGTTGCGACACTTATTTTAAGA 58.300 30.769 6.90 0.00 35.87 2.10
1465 1911 7.642586 ACAAAGTTGCGACACTTATTTTAAGAC 59.357 33.333 6.90 0.00 35.87 3.01
1466 1912 5.912528 AGTTGCGACACTTATTTTAAGACG 58.087 37.500 6.90 5.51 0.00 4.18
1467 1913 4.914312 TGCGACACTTATTTTAAGACGG 57.086 40.909 1.47 0.00 0.00 4.79
1468 1914 4.558178 TGCGACACTTATTTTAAGACGGA 58.442 39.130 1.47 3.42 0.00 4.69
1469 1915 4.624024 TGCGACACTTATTTTAAGACGGAG 59.376 41.667 1.47 0.00 0.00 4.63
1470 1916 4.032558 GCGACACTTATTTTAAGACGGAGG 59.967 45.833 1.47 0.00 0.00 4.30
1471 1917 4.565564 CGACACTTATTTTAAGACGGAGGG 59.434 45.833 1.47 0.00 0.00 4.30
1472 1918 5.622914 CGACACTTATTTTAAGACGGAGGGA 60.623 44.000 1.47 0.00 0.00 4.20
1473 1919 5.731591 ACACTTATTTTAAGACGGAGGGAG 58.268 41.667 1.47 0.00 0.00 4.30
1505 1951 9.661563 TTTTATCGACCATACTATGTTTGTCTT 57.338 29.630 0.00 0.00 0.00 3.01
1550 2000 0.620556 ACTCTCCCGGATGCAAATGT 59.379 50.000 0.73 0.00 0.00 2.71
1552 2002 1.672881 CTCTCCCGGATGCAAATGTTC 59.327 52.381 0.73 0.00 0.00 3.18
1615 2065 2.490991 GCCTTCTTACTTTCGTGTGGT 58.509 47.619 0.00 0.00 0.00 4.16
1783 2237 0.657312 TGCTTGTGCTCGAGTTGTTG 59.343 50.000 15.13 3.57 40.48 3.33
1847 2301 7.413000 CGTCCATGGACAAGAAAAGTACAATAG 60.413 40.741 37.42 15.86 44.77 1.73
1849 2303 6.150976 CCATGGACAAGAAAAGTACAATAGCA 59.849 38.462 5.56 0.00 32.69 3.49
1868 2322 2.893489 GCAAAGGATTTTCTGGACACCT 59.107 45.455 0.00 0.00 35.03 4.00
1890 2344 1.396653 CTCCCATTGCCTAAAGCTGG 58.603 55.000 0.00 0.00 44.23 4.85
2022 2476 3.303351 AGGGCCCAGTAATCTTGATTG 57.697 47.619 27.56 0.00 0.00 2.67
2027 2481 2.954318 CCCAGTAATCTTGATTGCCTGG 59.046 50.000 22.93 22.93 35.51 4.45
2203 2771 2.744760 AAGCTGATCAGTCCTAGCTGA 58.255 47.619 23.38 2.96 45.09 4.26
2209 2777 1.571955 TCAGTCCTAGCTGATTGGCA 58.428 50.000 0.00 0.00 40.23 4.92
2435 3016 0.179067 CCTACTTTATTGCCGGCCGA 60.179 55.000 30.73 13.73 0.00 5.54
2550 3135 3.420893 TGCAAATTGCTACAGGTAAGCT 58.579 40.909 19.34 0.00 45.31 3.74
2551 3136 3.191162 TGCAAATTGCTACAGGTAAGCTG 59.809 43.478 19.34 0.00 45.31 4.24
2554 3139 5.393962 CAAATTGCTACAGGTAAGCTGTTC 58.606 41.667 0.00 0.00 36.37 3.18
2558 3144 2.666994 GCTACAGGTAAGCTGTTCGAAC 59.333 50.000 21.42 21.42 36.37 3.95
2575 3161 3.994392 TCGAACTTGATTGTTCAGGTAGC 59.006 43.478 7.91 0.00 40.95 3.58
2592 3186 2.338577 AGCCATTGATCTGCTACCAC 57.661 50.000 0.00 0.00 32.56 4.16
2607 3202 5.428253 TGCTACCACAAAGAATGGACTATC 58.572 41.667 0.00 0.00 39.87 2.08
2696 3291 1.891150 CCATTAGGGCATCTCCAATGC 59.109 52.381 1.40 1.40 43.85 3.56
2699 3294 4.342427 GGGCATCTCCAATGCACA 57.658 55.556 11.69 0.00 46.98 4.57
2710 3305 1.614903 CCAATGCACATCGGCCATAAT 59.385 47.619 2.24 0.00 0.00 1.28
2711 3306 2.819019 CCAATGCACATCGGCCATAATA 59.181 45.455 2.24 0.00 0.00 0.98
2712 3307 3.255395 CCAATGCACATCGGCCATAATAA 59.745 43.478 2.24 0.00 0.00 1.40
2760 3355 6.227298 ACTTTACACATTGAGGAGATCGAT 57.773 37.500 0.00 0.00 31.59 3.59
2762 3357 7.782049 ACTTTACACATTGAGGAGATCGATTA 58.218 34.615 0.00 0.00 28.60 1.75
2773 3374 5.646215 AGGAGATCGATTATAAGGGTGTCT 58.354 41.667 0.00 0.00 0.00 3.41
2774 3375 5.712917 AGGAGATCGATTATAAGGGTGTCTC 59.287 44.000 0.00 0.00 0.00 3.36
2775 3376 5.105675 GGAGATCGATTATAAGGGTGTCTCC 60.106 48.000 15.20 15.20 41.48 3.71
2776 3377 5.394738 AGATCGATTATAAGGGTGTCTCCA 58.605 41.667 0.00 0.00 38.11 3.86
2777 3378 6.019748 AGATCGATTATAAGGGTGTCTCCAT 58.980 40.000 0.00 0.00 38.11 3.41
2778 3379 6.498651 AGATCGATTATAAGGGTGTCTCCATT 59.501 38.462 0.00 0.00 43.08 3.16
2779 3380 6.097915 TCGATTATAAGGGTGTCTCCATTC 57.902 41.667 0.00 0.00 40.83 2.67
2789 3390 3.560025 GGTGTCTCCATTCTCCAATGTGT 60.560 47.826 0.00 0.00 38.22 3.72
2791 3392 3.327464 TGTCTCCATTCTCCAATGTGTGA 59.673 43.478 0.00 0.00 38.22 3.58
2802 3403 4.647611 TCCAATGTGTGAATAAGGTCGTT 58.352 39.130 0.00 0.00 0.00 3.85
2803 3404 4.454161 TCCAATGTGTGAATAAGGTCGTTG 59.546 41.667 0.00 0.00 0.00 4.10
2828 3429 4.929146 AGGCACCTTAAGTCAACCTTAT 57.071 40.909 0.97 0.00 35.59 1.73
2830 3431 4.042934 AGGCACCTTAAGTCAACCTTATGT 59.957 41.667 0.97 0.00 35.59 2.29
2834 3435 5.411669 CACCTTAAGTCAACCTTATGTGACC 59.588 44.000 0.97 0.00 39.14 4.02
2843 3444 6.535508 GTCAACCTTATGTGACCTTAGACATC 59.464 42.308 0.00 0.00 34.60 3.06
2849 3450 3.154710 TGTGACCTTAGACATCGTGAGT 58.845 45.455 0.00 0.00 0.00 3.41
2907 3670 6.894339 AAACCTCATAACTACCACCAAAAG 57.106 37.500 0.00 0.00 0.00 2.27
2912 3675 6.296259 CCTCATAACTACCACCAAAAGTACCT 60.296 42.308 0.00 0.00 0.00 3.08
2915 3682 5.376756 AACTACCACCAAAAGTACCTCAA 57.623 39.130 0.00 0.00 0.00 3.02
2918 3685 1.535462 CCACCAAAAGTACCTCAAGCG 59.465 52.381 0.00 0.00 0.00 4.68
2921 3688 3.502211 CACCAAAAGTACCTCAAGCGAAT 59.498 43.478 0.00 0.00 0.00 3.34
2923 3690 4.935808 ACCAAAAGTACCTCAAGCGAATAG 59.064 41.667 0.00 0.00 0.00 1.73
2927 3694 7.494625 CCAAAAGTACCTCAAGCGAATAGATAA 59.505 37.037 0.00 0.00 0.00 1.75
2929 3696 9.444600 AAAAGTACCTCAAGCGAATAGATAAAA 57.555 29.630 0.00 0.00 0.00 1.52
2930 3697 8.421673 AAGTACCTCAAGCGAATAGATAAAAC 57.578 34.615 0.00 0.00 0.00 2.43
2931 3698 7.553334 AGTACCTCAAGCGAATAGATAAAACA 58.447 34.615 0.00 0.00 0.00 2.83
2932 3699 8.204836 AGTACCTCAAGCGAATAGATAAAACAT 58.795 33.333 0.00 0.00 0.00 2.71
2933 3700 7.251704 ACCTCAAGCGAATAGATAAAACATG 57.748 36.000 0.00 0.00 0.00 3.21
2934 3701 6.260936 ACCTCAAGCGAATAGATAAAACATGG 59.739 38.462 0.00 0.00 0.00 3.66
2935 3702 6.060028 TCAAGCGAATAGATAAAACATGGC 57.940 37.500 0.00 0.00 0.00 4.40
2936 3703 5.008613 TCAAGCGAATAGATAAAACATGGCC 59.991 40.000 0.00 0.00 0.00 5.36
2937 3704 3.821033 AGCGAATAGATAAAACATGGCCC 59.179 43.478 0.00 0.00 0.00 5.80
2938 3705 3.568007 GCGAATAGATAAAACATGGCCCA 59.432 43.478 0.00 0.00 0.00 5.36
2939 3706 4.037446 GCGAATAGATAAAACATGGCCCAA 59.963 41.667 0.00 0.00 0.00 4.12
2940 3707 5.278957 GCGAATAGATAAAACATGGCCCAAT 60.279 40.000 0.00 0.00 0.00 3.16
2941 3708 6.738453 GCGAATAGATAAAACATGGCCCAATT 60.738 38.462 0.00 0.00 0.00 2.32
2942 3709 6.642131 CGAATAGATAAAACATGGCCCAATTG 59.358 38.462 0.00 0.00 0.00 2.32
2943 3710 4.141233 AGATAAAACATGGCCCAATTGC 57.859 40.909 0.00 0.00 0.00 3.56
2980 3747 7.383300 GCCCAATTGCACAATAAATCTAGAATC 59.617 37.037 0.00 0.00 0.00 2.52
2981 3748 7.592533 CCCAATTGCACAATAAATCTAGAATCG 59.407 37.037 0.00 0.00 0.00 3.34
2982 3749 7.592533 CCAATTGCACAATAAATCTAGAATCGG 59.407 37.037 0.00 0.00 0.00 4.18
2983 3750 7.807977 ATTGCACAATAAATCTAGAATCGGT 57.192 32.000 0.00 0.00 0.00 4.69
2984 3751 6.603237 TGCACAATAAATCTAGAATCGGTG 57.397 37.500 0.00 2.64 0.00 4.94
2985 3752 6.112734 TGCACAATAAATCTAGAATCGGTGT 58.887 36.000 0.00 0.00 0.00 4.16
3055 4542 3.686045 GGCCGCGGAGATAGGGAG 61.686 72.222 33.48 0.00 0.00 4.30
3056 4543 2.597805 GCCGCGGAGATAGGGAGA 60.598 66.667 33.48 0.00 0.00 3.71
3057 4544 2.631580 GCCGCGGAGATAGGGAGAG 61.632 68.421 33.48 0.00 0.00 3.20
3058 4545 2.631580 CCGCGGAGATAGGGAGAGC 61.632 68.421 24.07 0.00 0.00 4.09
3059 4546 1.899054 CGCGGAGATAGGGAGAGCA 60.899 63.158 0.00 0.00 0.00 4.26
3060 4547 1.663173 GCGGAGATAGGGAGAGCAC 59.337 63.158 0.00 0.00 0.00 4.40
3061 4548 1.811645 GCGGAGATAGGGAGAGCACC 61.812 65.000 0.00 0.00 0.00 5.01
3062 4549 0.178975 CGGAGATAGGGAGAGCACCT 60.179 60.000 0.00 0.00 42.15 4.00
3063 4550 1.337118 GGAGATAGGGAGAGCACCTG 58.663 60.000 0.00 0.00 39.12 4.00
3064 4551 1.133325 GGAGATAGGGAGAGCACCTGA 60.133 57.143 0.00 0.00 39.12 3.86
3065 4552 1.960689 GAGATAGGGAGAGCACCTGAC 59.039 57.143 0.00 0.00 39.12 3.51
3066 4553 1.573376 AGATAGGGAGAGCACCTGACT 59.427 52.381 0.00 0.00 39.12 3.41
3067 4554 1.686052 GATAGGGAGAGCACCTGACTG 59.314 57.143 0.00 0.00 39.12 3.51
3068 4555 0.972983 TAGGGAGAGCACCTGACTGC 60.973 60.000 0.00 0.00 39.12 4.40
3069 4556 2.267324 GGAGAGCACCTGACTGCC 59.733 66.667 0.00 0.00 37.96 4.85
3070 4557 2.125753 GAGAGCACCTGACTGCCG 60.126 66.667 0.00 0.00 37.96 5.69
3071 4558 2.601666 AGAGCACCTGACTGCCGA 60.602 61.111 0.00 0.00 37.96 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 9.308000 AGGTTGTTTGATGATAAATCCAAGTAA 57.692 29.630 0.00 0.00 0.00 2.24
212 220 0.610174 CAAGCCACCTAGCTGACTCA 59.390 55.000 0.00 0.00 44.11 3.41
228 236 3.058708 TCAAAACTTCGAGCATGCTCAAG 60.059 43.478 38.97 36.07 42.86 3.02
291 299 1.722507 GCTGAACGTGCGCTGAAAC 60.723 57.895 9.73 0.00 0.00 2.78
302 310 2.103094 TCAATGGATAGGAGGCTGAACG 59.897 50.000 0.00 0.00 0.00 3.95
409 417 5.686753 ACCTTTCACTACACCACACAATTA 58.313 37.500 0.00 0.00 0.00 1.40
515 526 6.860080 AGTGCCATGATAAACAGAAAAGATG 58.140 36.000 0.00 0.00 0.00 2.90
641 661 1.281353 GTGGCGTCGACAATTTGCA 59.719 52.632 17.16 0.00 0.00 4.08
651 671 3.906008 CACTAAAATTTTCTGTGGCGTCG 59.094 43.478 20.36 0.00 0.00 5.12
731 751 7.926018 TCTTCTTTACTGCAAATATCTCGCATA 59.074 33.333 0.00 0.00 34.63 3.14
917 938 1.981256 TGCAGTTTCCTTGGTCCTTC 58.019 50.000 0.00 0.00 0.00 3.46
1094 1115 8.993121 CCACATCTAATAGTTTAGCAATACCAG 58.007 37.037 0.00 0.00 35.72 4.00
1104 1125 7.684317 TGACCCATCCACATCTAATAGTTTA 57.316 36.000 0.00 0.00 0.00 2.01
1108 1129 6.484643 CAGTTTGACCCATCCACATCTAATAG 59.515 42.308 0.00 0.00 0.00 1.73
1147 1170 4.016444 GGTGCAAGATATCCTTTTGTCCA 58.984 43.478 0.00 0.00 31.42 4.02
1385 1831 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
1386 1832 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
1387 1833 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
1388 1834 4.083484 GGTTGAGACACTTATTTTGGGACG 60.083 45.833 0.00 0.00 0.00 4.79
1389 1835 5.070685 AGGTTGAGACACTTATTTTGGGAC 58.929 41.667 0.00 0.00 0.00 4.46
1390 1836 5.319043 AGGTTGAGACACTTATTTTGGGA 57.681 39.130 0.00 0.00 0.00 4.37
1391 1837 6.715264 ACTAAGGTTGAGACACTTATTTTGGG 59.285 38.462 0.00 0.00 0.00 4.12
1392 1838 7.745620 ACTAAGGTTGAGACACTTATTTTGG 57.254 36.000 0.00 0.00 0.00 3.28
1393 1839 9.268268 TGTACTAAGGTTGAGACACTTATTTTG 57.732 33.333 0.00 0.00 0.00 2.44
1394 1840 9.841295 TTGTACTAAGGTTGAGACACTTATTTT 57.159 29.630 0.00 0.00 0.00 1.82
1395 1841 9.269453 GTTGTACTAAGGTTGAGACACTTATTT 57.731 33.333 0.00 0.00 0.00 1.40
1396 1842 8.648693 AGTTGTACTAAGGTTGAGACACTTATT 58.351 33.333 0.00 0.00 0.00 1.40
1397 1843 8.191534 AGTTGTACTAAGGTTGAGACACTTAT 57.808 34.615 0.00 0.00 0.00 1.73
1398 1844 7.592885 AGTTGTACTAAGGTTGAGACACTTA 57.407 36.000 0.00 0.00 0.00 2.24
1399 1845 6.481434 AGTTGTACTAAGGTTGAGACACTT 57.519 37.500 0.00 0.00 0.00 3.16
1400 1846 6.481434 AAGTTGTACTAAGGTTGAGACACT 57.519 37.500 0.00 0.00 0.00 3.55
1401 1847 6.537660 ACAAAGTTGTACTAAGGTTGAGACAC 59.462 38.462 0.00 0.00 40.16 3.67
1402 1848 6.646267 ACAAAGTTGTACTAAGGTTGAGACA 58.354 36.000 0.00 0.00 40.16 3.41
1416 1862 7.711846 TGTACTAACTTCCGTACAAAGTTGTA 58.288 34.615 23.67 20.14 44.47 2.41
1417 1863 6.572519 TGTACTAACTTCCGTACAAAGTTGT 58.427 36.000 23.67 20.78 44.47 3.32
1424 1870 5.463061 GCAACTTTGTACTAACTTCCGTACA 59.537 40.000 0.00 0.00 42.86 2.90
1425 1871 5.387752 CGCAACTTTGTACTAACTTCCGTAC 60.388 44.000 0.00 0.00 37.19 3.67
1426 1872 4.681025 CGCAACTTTGTACTAACTTCCGTA 59.319 41.667 0.00 0.00 0.00 4.02
1427 1873 3.492011 CGCAACTTTGTACTAACTTCCGT 59.508 43.478 0.00 0.00 0.00 4.69
1428 1874 3.737266 TCGCAACTTTGTACTAACTTCCG 59.263 43.478 0.00 0.00 0.00 4.30
1429 1875 4.508861 TGTCGCAACTTTGTACTAACTTCC 59.491 41.667 0.00 0.00 0.00 3.46
1430 1876 5.233689 AGTGTCGCAACTTTGTACTAACTTC 59.766 40.000 0.00 0.00 0.00 3.01
1431 1877 5.114081 AGTGTCGCAACTTTGTACTAACTT 58.886 37.500 0.00 0.00 0.00 2.66
1432 1878 4.690122 AGTGTCGCAACTTTGTACTAACT 58.310 39.130 0.00 0.00 0.00 2.24
1433 1879 5.399604 AAGTGTCGCAACTTTGTACTAAC 57.600 39.130 0.00 0.00 37.05 2.34
1434 1880 7.718272 AATAAGTGTCGCAACTTTGTACTAA 57.282 32.000 7.70 0.00 40.77 2.24
1435 1881 7.718272 AAATAAGTGTCGCAACTTTGTACTA 57.282 32.000 7.70 0.00 40.77 1.82
1436 1882 6.613755 AAATAAGTGTCGCAACTTTGTACT 57.386 33.333 7.70 0.00 40.77 2.73
1437 1883 8.770850 TTAAAATAAGTGTCGCAACTTTGTAC 57.229 30.769 7.70 0.00 40.77 2.90
1438 1884 8.828644 TCTTAAAATAAGTGTCGCAACTTTGTA 58.171 29.630 7.70 0.00 40.77 2.41
1439 1885 7.642586 GTCTTAAAATAAGTGTCGCAACTTTGT 59.357 33.333 7.70 0.00 40.77 2.83
1440 1886 7.149351 CGTCTTAAAATAAGTGTCGCAACTTTG 60.149 37.037 7.70 0.00 40.77 2.77
1441 1887 6.849305 CGTCTTAAAATAAGTGTCGCAACTTT 59.151 34.615 7.70 0.00 40.77 2.66
1442 1888 6.360329 CGTCTTAAAATAAGTGTCGCAACTT 58.640 36.000 7.56 7.56 42.89 2.66
1443 1889 5.107220 CCGTCTTAAAATAAGTGTCGCAACT 60.107 40.000 0.00 0.00 0.00 3.16
1444 1890 5.077424 CCGTCTTAAAATAAGTGTCGCAAC 58.923 41.667 0.00 0.00 0.00 4.17
1445 1891 4.989797 TCCGTCTTAAAATAAGTGTCGCAA 59.010 37.500 0.00 0.00 0.00 4.85
1446 1892 4.558178 TCCGTCTTAAAATAAGTGTCGCA 58.442 39.130 0.00 0.00 0.00 5.10
1447 1893 4.032558 CCTCCGTCTTAAAATAAGTGTCGC 59.967 45.833 0.00 0.00 0.00 5.19
1448 1894 4.565564 CCCTCCGTCTTAAAATAAGTGTCG 59.434 45.833 0.00 2.61 0.00 4.35
1449 1895 5.727434 TCCCTCCGTCTTAAAATAAGTGTC 58.273 41.667 0.00 0.00 0.00 3.67
1450 1896 5.247792 ACTCCCTCCGTCTTAAAATAAGTGT 59.752 40.000 0.00 0.00 0.00 3.55
1451 1897 5.731591 ACTCCCTCCGTCTTAAAATAAGTG 58.268 41.667 0.00 0.00 0.00 3.16
1452 1898 7.564292 AGATACTCCCTCCGTCTTAAAATAAGT 59.436 37.037 0.00 0.00 0.00 2.24
1453 1899 7.953752 AGATACTCCCTCCGTCTTAAAATAAG 58.046 38.462 0.00 0.00 0.00 1.73
1454 1900 7.909485 AGATACTCCCTCCGTCTTAAAATAA 57.091 36.000 0.00 0.00 0.00 1.40
1455 1901 7.909485 AAGATACTCCCTCCGTCTTAAAATA 57.091 36.000 0.00 0.00 0.00 1.40
1456 1902 6.809976 AAGATACTCCCTCCGTCTTAAAAT 57.190 37.500 0.00 0.00 0.00 1.82
1457 1903 6.616237 AAAGATACTCCCTCCGTCTTAAAA 57.384 37.500 0.00 0.00 0.00 1.52
1458 1904 6.616237 AAAAGATACTCCCTCCGTCTTAAA 57.384 37.500 0.00 0.00 0.00 1.52
1459 1905 6.616237 AAAAAGATACTCCCTCCGTCTTAA 57.384 37.500 0.00 0.00 0.00 1.85
1460 1906 7.255381 CGATAAAAAGATACTCCCTCCGTCTTA 60.255 40.741 0.00 0.00 0.00 2.10
1461 1907 6.461231 CGATAAAAAGATACTCCCTCCGTCTT 60.461 42.308 0.00 0.00 0.00 3.01
1462 1908 5.009811 CGATAAAAAGATACTCCCTCCGTCT 59.990 44.000 0.00 0.00 0.00 4.18
1463 1909 5.009410 TCGATAAAAAGATACTCCCTCCGTC 59.991 44.000 0.00 0.00 0.00 4.79
1464 1910 4.891756 TCGATAAAAAGATACTCCCTCCGT 59.108 41.667 0.00 0.00 0.00 4.69
1465 1911 5.221130 GTCGATAAAAAGATACTCCCTCCG 58.779 45.833 0.00 0.00 0.00 4.63
1466 1912 5.070047 TGGTCGATAAAAAGATACTCCCTCC 59.930 44.000 0.00 0.00 0.00 4.30
1467 1913 6.158023 TGGTCGATAAAAAGATACTCCCTC 57.842 41.667 0.00 0.00 0.00 4.30
1468 1914 6.749036 ATGGTCGATAAAAAGATACTCCCT 57.251 37.500 0.00 0.00 0.00 4.20
1469 1915 7.668492 AGTATGGTCGATAAAAAGATACTCCC 58.332 38.462 0.00 0.00 0.00 4.30
1505 1951 7.052248 TCTCGTATGTAGATTGTAGAGACCAA 58.948 38.462 0.00 0.00 0.00 3.67
1615 2065 7.626084 TGAAGGGATAATAAGACTTGTTCCCTA 59.374 37.037 19.32 7.16 43.73 3.53
1783 2237 0.250467 CACCCGGATGATGTCCCATC 60.250 60.000 0.73 0.00 44.77 3.51
1847 2301 2.893489 AGGTGTCCAGAAAATCCTTTGC 59.107 45.455 0.00 0.00 0.00 3.68
1849 2303 3.500343 CCAGGTGTCCAGAAAATCCTTT 58.500 45.455 0.00 0.00 0.00 3.11
1858 2312 2.607750 GGGAGCCAGGTGTCCAGA 60.608 66.667 11.20 0.00 34.14 3.86
1890 2344 9.153721 TCACTTTGAATATTTCATTTGCAATCC 57.846 29.630 0.00 0.00 39.84 3.01
2022 2476 1.079503 GACGATTTCAGTGTCCAGGC 58.920 55.000 0.00 0.00 0.00 4.85
2027 2481 2.932614 CAGGGATGACGATTTCAGTGTC 59.067 50.000 0.00 0.00 37.77 3.67
2340 2915 5.220815 GCAGTTCTTCAATAAGAGGATGCAG 60.221 44.000 12.49 0.00 42.60 4.41
2558 3144 4.701651 TCAATGGCTACCTGAACAATCAAG 59.298 41.667 0.00 0.00 34.49 3.02
2575 3161 4.264253 TCTTTGTGGTAGCAGATCAATGG 58.736 43.478 0.00 0.00 0.00 3.16
2607 3202 9.601971 TGCTAAAAGCGTAATAACAGTAAAAAG 57.398 29.630 0.00 0.00 46.26 2.27
2624 3219 5.134978 GCACATGCTAAATTGCTAAAAGC 57.865 39.130 0.00 0.00 38.88 3.51
2686 3281 0.820891 GGCCGATGTGCATTGGAGAT 60.821 55.000 19.77 0.00 43.71 2.75
2696 3291 4.631131 TGAGACTTATTATGGCCGATGTG 58.369 43.478 0.00 0.00 0.00 3.21
2699 3294 5.765182 CCTTTTGAGACTTATTATGGCCGAT 59.235 40.000 0.00 0.00 0.00 4.18
2773 3374 5.887598 CCTTATTCACACATTGGAGAATGGA 59.112 40.000 0.00 0.00 43.00 3.41
2774 3375 5.653769 ACCTTATTCACACATTGGAGAATGG 59.346 40.000 0.00 6.72 43.00 3.16
2775 3376 6.457392 CGACCTTATTCACACATTGGAGAATG 60.457 42.308 9.39 0.00 44.11 2.67
2776 3377 5.586243 CGACCTTATTCACACATTGGAGAAT 59.414 40.000 0.00 0.00 33.19 2.40
2777 3378 4.935205 CGACCTTATTCACACATTGGAGAA 59.065 41.667 0.00 0.00 0.00 2.87
2778 3379 4.020573 ACGACCTTATTCACACATTGGAGA 60.021 41.667 0.00 0.00 0.00 3.71
2779 3380 4.253685 ACGACCTTATTCACACATTGGAG 58.746 43.478 0.00 0.00 0.00 3.86
2789 3390 4.873827 GTGCCTTATCAACGACCTTATTCA 59.126 41.667 0.00 0.00 0.00 2.57
2791 3392 4.080526 AGGTGCCTTATCAACGACCTTATT 60.081 41.667 0.00 0.00 29.17 1.40
2802 3403 4.288626 AGGTTGACTTAAGGTGCCTTATCA 59.711 41.667 11.08 10.00 38.20 2.15
2803 3404 4.844884 AGGTTGACTTAAGGTGCCTTATC 58.155 43.478 11.08 7.80 38.20 1.75
2828 3429 3.154710 ACTCACGATGTCTAAGGTCACA 58.845 45.455 0.00 0.00 0.00 3.58
2830 3431 4.329392 TGTACTCACGATGTCTAAGGTCA 58.671 43.478 0.00 0.00 0.00 4.02
2834 3435 7.251281 TGATTCTTGTACTCACGATGTCTAAG 58.749 38.462 0.00 0.00 0.00 2.18
2843 3444 2.346847 GCTGCTGATTCTTGTACTCACG 59.653 50.000 0.00 0.00 0.00 4.35
2849 3450 0.250234 AGGCGCTGCTGATTCTTGTA 59.750 50.000 7.64 0.00 0.00 2.41
2885 3486 5.948842 ACTTTTGGTGGTAGTTATGAGGTT 58.051 37.500 0.00 0.00 0.00 3.50
2902 3665 6.910536 ATCTATTCGCTTGAGGTACTTTTG 57.089 37.500 0.00 0.00 41.55 2.44
2907 3670 7.766219 TGTTTTATCTATTCGCTTGAGGTAC 57.234 36.000 0.00 0.00 0.00 3.34
2912 3675 5.008613 GGCCATGTTTTATCTATTCGCTTGA 59.991 40.000 0.00 0.00 0.00 3.02
2915 3682 3.821033 GGGCCATGTTTTATCTATTCGCT 59.179 43.478 4.39 0.00 0.00 4.93
2918 3685 6.424812 GCAATTGGGCCATGTTTTATCTATTC 59.575 38.462 7.26 0.00 0.00 1.75
2921 3688 4.713814 TGCAATTGGGCCATGTTTTATCTA 59.286 37.500 7.26 0.00 0.00 1.98
2923 3690 3.622612 GTGCAATTGGGCCATGTTTTATC 59.377 43.478 7.26 0.00 0.00 1.75
2927 3694 0.763652 TGTGCAATTGGGCCATGTTT 59.236 45.000 7.26 0.00 0.00 2.83
2929 3696 0.763652 TTTGTGCAATTGGGCCATGT 59.236 45.000 7.26 0.00 0.00 3.21
2930 3697 1.893544 TTTTGTGCAATTGGGCCATG 58.106 45.000 7.26 4.55 0.00 3.66
2931 3698 2.883122 ATTTTGTGCAATTGGGCCAT 57.117 40.000 7.26 0.00 0.00 4.40
2932 3699 3.607741 CATATTTTGTGCAATTGGGCCA 58.392 40.909 0.00 0.00 0.00 5.36
2933 3700 2.944349 CCATATTTTGTGCAATTGGGCC 59.056 45.455 7.72 0.00 0.00 5.80
2934 3701 2.355444 GCCATATTTTGTGCAATTGGGC 59.645 45.455 7.72 3.49 31.14 5.36
2935 3702 2.944349 GGCCATATTTTGTGCAATTGGG 59.056 45.455 7.72 0.00 0.00 4.12
2936 3703 2.944349 GGGCCATATTTTGTGCAATTGG 59.056 45.455 4.39 0.00 0.00 3.16
2937 3704 3.607741 TGGGCCATATTTTGTGCAATTG 58.392 40.909 0.00 0.00 0.00 2.32
2938 3705 3.996921 TGGGCCATATTTTGTGCAATT 57.003 38.095 0.00 0.00 0.00 2.32
2939 3706 3.996921 TTGGGCCATATTTTGTGCAAT 57.003 38.095 7.26 0.00 0.00 3.56
2940 3707 3.996921 ATTGGGCCATATTTTGTGCAA 57.003 38.095 7.26 0.00 0.00 4.08
2941 3708 3.607741 CAATTGGGCCATATTTTGTGCA 58.392 40.909 7.26 0.00 0.00 4.57
2942 3709 2.355444 GCAATTGGGCCATATTTTGTGC 59.645 45.455 7.26 7.13 0.00 4.57
2943 3710 3.374678 GTGCAATTGGGCCATATTTTGTG 59.625 43.478 7.26 0.81 0.00 3.33
2985 3752 4.116328 CAAGTCGAGGAGCGCCGA 62.116 66.667 2.29 2.28 40.61 5.54
3038 4525 3.686045 CTCCCTATCTCCGCGGCC 61.686 72.222 23.51 0.00 0.00 6.13
3039 4526 2.597805 TCTCCCTATCTCCGCGGC 60.598 66.667 23.51 0.00 0.00 6.53
3040 4527 2.631580 GCTCTCCCTATCTCCGCGG 61.632 68.421 22.12 22.12 0.00 6.46
3041 4528 1.899054 TGCTCTCCCTATCTCCGCG 60.899 63.158 0.00 0.00 0.00 6.46
3042 4529 1.663173 GTGCTCTCCCTATCTCCGC 59.337 63.158 0.00 0.00 0.00 5.54
3043 4530 0.178975 AGGTGCTCTCCCTATCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
3044 4531 1.133325 TCAGGTGCTCTCCCTATCTCC 60.133 57.143 0.00 0.00 0.00 3.71
3045 4532 1.960689 GTCAGGTGCTCTCCCTATCTC 59.039 57.143 0.00 0.00 0.00 2.75
3046 4533 1.573376 AGTCAGGTGCTCTCCCTATCT 59.427 52.381 0.00 0.00 0.00 1.98
3047 4534 1.686052 CAGTCAGGTGCTCTCCCTATC 59.314 57.143 0.00 0.00 0.00 2.08
3048 4535 1.786937 CAGTCAGGTGCTCTCCCTAT 58.213 55.000 0.00 0.00 0.00 2.57
3049 4536 0.972983 GCAGTCAGGTGCTCTCCCTA 60.973 60.000 0.00 0.00 40.54 3.53
3050 4537 2.289532 GCAGTCAGGTGCTCTCCCT 61.290 63.158 0.00 0.00 40.54 4.20
3051 4538 2.267324 GCAGTCAGGTGCTCTCCC 59.733 66.667 0.00 0.00 40.54 4.30
3052 4539 2.267324 GGCAGTCAGGTGCTCTCC 59.733 66.667 0.00 0.00 43.45 3.71
3053 4540 2.125753 CGGCAGTCAGGTGCTCTC 60.126 66.667 0.00 0.00 43.45 3.20
3054 4541 2.601666 TCGGCAGTCAGGTGCTCT 60.602 61.111 0.00 0.00 43.45 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.