Multiple sequence alignment - TraesCS5D01G426500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G426500 chr5D 100.000 3110 0 0 1 3110 484972808 484975917 0.000000e+00 5744.0
1 TraesCS5D01G426500 chr5D 76.493 804 155 24 1 786 275602460 275601673 1.040000e-109 407.0
2 TraesCS5D01G426500 chr5D 88.158 76 9 0 1582 1657 484974185 484974260 1.190000e-14 91.6
3 TraesCS5D01G426500 chr5D 88.158 76 9 0 1378 1453 484974389 484974464 1.190000e-14 91.6
4 TraesCS5D01G426500 chr5D 100.000 49 0 0 3062 3110 485112028 485111980 1.190000e-14 91.6
5 TraesCS5D01G426500 chr5D 96.226 53 2 0 3058 3110 490581381 490581433 1.540000e-13 87.9
6 TraesCS5D01G426500 chr5A 90.334 2245 119 40 855 3059 606306639 606308825 0.000000e+00 2854.0
7 TraesCS5D01G426500 chr5A 86.385 213 25 3 1445 1657 606307130 606307338 2.410000e-56 230.0
8 TraesCS5D01G426500 chr5A 74.154 650 112 33 955 1568 606526012 606526641 5.220000e-53 219.0
9 TraesCS5D01G426500 chr5A 83.628 226 27 6 1347 1568 606307228 606307447 1.460000e-48 204.0
10 TraesCS5D01G426500 chr5A 89.474 76 8 0 1582 1657 606307161 606307236 2.550000e-16 97.1
11 TraesCS5D01G426500 chr5A 98.000 50 1 0 3061 3110 336836158 336836207 1.540000e-13 87.9
12 TraesCS5D01G426500 chr5B 89.179 1645 74 29 1471 3065 596438899 596437309 0.000000e+00 1956.0
13 TraesCS5D01G426500 chr5B 89.892 742 49 13 855 1586 596439407 596438682 0.000000e+00 931.0
14 TraesCS5D01G426500 chr5B 79.950 808 136 16 1 793 672270753 672269957 3.480000e-159 571.0
15 TraesCS5D01G426500 chr5B 90.000 70 7 0 1588 1657 596438884 596438815 1.190000e-14 91.6
16 TraesCS5D01G426500 chr1A 81.773 812 121 19 1 790 132411369 132412175 0.000000e+00 654.0
17 TraesCS5D01G426500 chr7D 80.175 802 138 13 1 787 610710798 610710003 5.780000e-162 580.0
18 TraesCS5D01G426500 chr7D 79.625 800 141 13 1 785 534622429 534621637 3.500000e-154 555.0
19 TraesCS5D01G426500 chr7D 79.350 615 107 13 102 701 21711570 21712179 6.210000e-112 414.0
20 TraesCS5D01G426500 chr7D 98.000 50 1 0 3061 3110 8758742 8758693 1.540000e-13 87.9
21 TraesCS5D01G426500 chr7D 98.000 50 1 0 3061 3110 60117704 60117753 1.540000e-13 87.9
22 TraesCS5D01G426500 chr7D 88.571 70 4 4 3045 3110 56631114 56631045 7.150000e-12 82.4
23 TraesCS5D01G426500 chr3D 80.199 803 134 16 2 787 24642341 24643135 2.080000e-161 579.0
24 TraesCS5D01G426500 chr6B 80.025 801 139 12 1 787 718589020 718589813 9.670000e-160 573.0
25 TraesCS5D01G426500 chr6B 78.304 802 154 13 1 788 720058236 720057441 1.670000e-137 499.0
26 TraesCS5D01G426500 chr1D 79.775 801 139 14 1 786 473630109 473630901 7.530000e-156 560.0
27 TraesCS5D01G426500 chr7A 80.641 718 117 17 1 702 380514112 380514823 1.270000e-148 536.0
28 TraesCS5D01G426500 chr7A 76.734 447 87 14 411 841 725589320 725589765 1.860000e-57 233.0
29 TraesCS5D01G426500 chr6A 77.543 806 152 21 5 793 364622717 364621924 2.830000e-125 459.0
30 TraesCS5D01G426500 chr3B 77.569 798 147 15 1 786 828729798 828729021 1.310000e-123 453.0
31 TraesCS5D01G426500 chr7B 79.649 570 88 20 247 793 221460275 221459711 4.870000e-103 385.0
32 TraesCS5D01G426500 chr7B 81.341 343 45 14 332 661 443652323 443651987 8.550000e-66 261.0
33 TraesCS5D01G426500 chr2D 81.232 357 58 5 439 790 529854316 529854668 2.360000e-71 279.0
34 TraesCS5D01G426500 chr2D 81.081 296 53 2 418 710 440319842 440320137 1.860000e-57 233.0
35 TraesCS5D01G426500 chr2D 98.000 50 1 0 3061 3110 25974273 25974322 1.540000e-13 87.9
36 TraesCS5D01G426500 chr6D 100.000 48 0 0 3063 3110 269794592 269794639 4.270000e-14 89.8
37 TraesCS5D01G426500 chr6D 98.000 50 1 0 3061 3110 432975087 432975136 1.540000e-13 87.9
38 TraesCS5D01G426500 chr2B 94.000 50 3 0 793 842 754980212 754980163 3.330000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G426500 chr5D 484972808 484975917 3109 False 1975.733333 5744 92.105333 1 3110 3 chr5D.!!$F2 3109
1 TraesCS5D01G426500 chr5D 275601673 275602460 787 True 407.000000 407 76.493000 1 786 1 chr5D.!!$R1 785
2 TraesCS5D01G426500 chr5A 606306639 606308825 2186 False 846.275000 2854 87.455250 855 3059 4 chr5A.!!$F3 2204
3 TraesCS5D01G426500 chr5A 606526012 606526641 629 False 219.000000 219 74.154000 955 1568 1 chr5A.!!$F2 613
4 TraesCS5D01G426500 chr5B 596437309 596439407 2098 True 992.866667 1956 89.690333 855 3065 3 chr5B.!!$R2 2210
5 TraesCS5D01G426500 chr5B 672269957 672270753 796 True 571.000000 571 79.950000 1 793 1 chr5B.!!$R1 792
6 TraesCS5D01G426500 chr1A 132411369 132412175 806 False 654.000000 654 81.773000 1 790 1 chr1A.!!$F1 789
7 TraesCS5D01G426500 chr7D 610710003 610710798 795 True 580.000000 580 80.175000 1 787 1 chr7D.!!$R4 786
8 TraesCS5D01G426500 chr7D 534621637 534622429 792 True 555.000000 555 79.625000 1 785 1 chr7D.!!$R3 784
9 TraesCS5D01G426500 chr7D 21711570 21712179 609 False 414.000000 414 79.350000 102 701 1 chr7D.!!$F1 599
10 TraesCS5D01G426500 chr3D 24642341 24643135 794 False 579.000000 579 80.199000 2 787 1 chr3D.!!$F1 785
11 TraesCS5D01G426500 chr6B 718589020 718589813 793 False 573.000000 573 80.025000 1 787 1 chr6B.!!$F1 786
12 TraesCS5D01G426500 chr6B 720057441 720058236 795 True 499.000000 499 78.304000 1 788 1 chr6B.!!$R1 787
13 TraesCS5D01G426500 chr1D 473630109 473630901 792 False 560.000000 560 79.775000 1 786 1 chr1D.!!$F1 785
14 TraesCS5D01G426500 chr7A 380514112 380514823 711 False 536.000000 536 80.641000 1 702 1 chr7A.!!$F1 701
15 TraesCS5D01G426500 chr6A 364621924 364622717 793 True 459.000000 459 77.543000 5 793 1 chr6A.!!$R1 788
16 TraesCS5D01G426500 chr3B 828729021 828729798 777 True 453.000000 453 77.569000 1 786 1 chr3B.!!$R1 785
17 TraesCS5D01G426500 chr7B 221459711 221460275 564 True 385.000000 385 79.649000 247 793 1 chr7B.!!$R1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
614 634 0.033642 TGTGTATGCGGTTGGAACGA 59.966 50.000 0.00 0.0 0.00 3.85 F
632 652 1.248486 GAGTGGCCAAGGAGGTTTTC 58.752 55.000 7.24 0.0 40.61 2.29 F
1589 1712 1.677633 CATCCCAACGGTTCCCACC 60.678 63.158 0.00 0.0 40.16 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 1891 0.038166 CAAGTTAGGCAAGCTGGGGA 59.962 55.0 0.00 0.0 0.00 4.81 R
1752 1896 0.111253 AGTGGCAAGTTAGGCAAGCT 59.889 50.0 0.00 0.0 46.19 3.74 R
3076 3301 0.328258 CCGGGACAGATGACCCTTTT 59.672 55.0 16.56 0.0 45.84 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 3.825014 AGTTGACTCTATGTACCGTGTGT 59.175 43.478 0.00 0.00 0.00 3.72
133 134 2.143122 GTTCACGCATTCAGAGGTTCA 58.857 47.619 0.00 0.00 0.00 3.18
221 223 0.603569 TTCGGAGAGGAGTTGTGCTC 59.396 55.000 0.00 0.00 41.41 4.26
223 225 0.534412 CGGAGAGGAGTTGTGCTCAT 59.466 55.000 0.00 0.00 43.50 2.90
241 243 3.525537 TCATCAAAGACAATCTCGCTCC 58.474 45.455 0.00 0.00 0.00 4.70
245 247 1.464734 AAGACAATCTCGCTCCTCGA 58.535 50.000 0.00 0.00 46.29 4.04
259 261 2.819608 CTCCTCGAAATTGGCAAGGAAA 59.180 45.455 5.96 0.00 35.77 3.13
263 265 4.367450 CTCGAAATTGGCAAGGAAACAAA 58.633 39.130 5.96 0.00 0.00 2.83
304 308 4.272504 TCACGAAGACAATCAAACACCTTC 59.727 41.667 0.00 0.00 0.00 3.46
322 328 4.141482 ACCTTCTTTTCTAGTGCAAGTCCA 60.141 41.667 0.00 0.00 0.00 4.02
324 330 4.689612 TCTTTTCTAGTGCAAGTCCACT 57.310 40.909 0.00 0.23 46.98 4.00
360 366 7.220030 AGTCAATCATCCAAATAGCGTCTAAT 58.780 34.615 0.00 0.00 0.00 1.73
398 405 5.526846 ACAAGTGTTGCCAATATTTTTGGTG 59.473 36.000 7.57 0.00 41.53 4.17
401 408 5.305644 AGTGTTGCCAATATTTTTGGTGGTA 59.694 36.000 7.57 0.00 41.53 3.25
415 430 8.722622 TTTTTGGTGGTAGGTATTCCAAATAA 57.277 30.769 8.19 4.42 44.14 1.40
423 438 9.895138 TGGTAGGTATTCCAAATAAGTTTAGAC 57.105 33.333 0.00 0.00 35.89 2.59
441 456 1.487558 GACCGCTTATAAGGGTGGGAA 59.512 52.381 22.79 0.00 37.27 3.97
467 482 3.616219 TGCCTTATTATGGTCGCTTTGT 58.384 40.909 0.00 0.00 0.00 2.83
469 484 3.003378 GCCTTATTATGGTCGCTTTGTCC 59.997 47.826 0.00 0.00 0.00 4.02
480 497 3.060895 GTCGCTTTGTCCGTAGAAATGAG 59.939 47.826 0.00 0.00 0.00 2.90
483 500 4.624024 CGCTTTGTCCGTAGAAATGAGTTA 59.376 41.667 0.00 0.00 0.00 2.24
495 513 9.274065 CGTAGAAATGAGTTAGTTTTTAATGGC 57.726 33.333 0.00 0.00 0.00 4.40
533 553 8.026607 GCTTTGCAGGTTATTTTCTATTGTACA 58.973 33.333 0.00 0.00 0.00 2.90
535 555 7.067532 TGCAGGTTATTTTCTATTGTACACG 57.932 36.000 0.00 0.00 0.00 4.49
548 568 1.665169 TGTACACGCTCGCTTCGTATA 59.335 47.619 0.00 0.00 38.19 1.47
565 585 5.318630 TCGTATATGGTCTATGCTACACCA 58.681 41.667 0.00 0.00 44.36 4.17
572 592 2.928116 GTCTATGCTACACCAAACGGAC 59.072 50.000 0.00 0.00 0.00 4.79
576 596 1.414919 TGCTACACCAAACGGACTTCT 59.585 47.619 0.00 0.00 0.00 2.85
593 613 3.055385 ACTTCTAACCGCTATTCAAGGCA 60.055 43.478 0.00 0.00 0.00 4.75
614 634 0.033642 TGTGTATGCGGTTGGAACGA 59.966 50.000 0.00 0.00 0.00 3.85
632 652 1.248486 GAGTGGCCAAGGAGGTTTTC 58.752 55.000 7.24 0.00 40.61 2.29
662 682 4.649267 TGGGTGACAACATAATCTCCAA 57.351 40.909 0.00 0.00 31.38 3.53
664 684 4.764823 TGGGTGACAACATAATCTCCAAAC 59.235 41.667 0.00 0.00 31.38 2.93
670 690 3.992943 ACATAATCTCCAAACCGGTCA 57.007 42.857 8.04 0.00 35.57 4.02
710 731 7.899172 ACATAGGCATAGTGTTGGTCCTATATA 59.101 37.037 0.00 0.00 35.72 0.86
725 748 9.038072 TGGTCCTATATAACTACTGTTGTTGAA 57.962 33.333 16.06 5.95 37.59 2.69
775 810 7.496591 TCTTTTGTTAGACTGTTCGTATTTGGT 59.503 33.333 0.00 0.00 0.00 3.67
781 816 4.879545 AGACTGTTCGTATTTGGTTGTGTT 59.120 37.500 0.00 0.00 0.00 3.32
793 828 5.957842 TTGGTTGTGTTCATCTTGGATAC 57.042 39.130 0.00 0.00 0.00 2.24
794 829 5.241403 TGGTTGTGTTCATCTTGGATACT 57.759 39.130 0.00 0.00 37.61 2.12
795 830 5.245531 TGGTTGTGTTCATCTTGGATACTC 58.754 41.667 0.00 0.00 37.61 2.59
796 831 5.221823 TGGTTGTGTTCATCTTGGATACTCA 60.222 40.000 0.00 0.00 37.61 3.41
797 832 5.882557 GGTTGTGTTCATCTTGGATACTCAT 59.117 40.000 0.00 0.00 37.61 2.90
798 833 6.375455 GGTTGTGTTCATCTTGGATACTCATT 59.625 38.462 0.00 0.00 37.61 2.57
799 834 7.552687 GGTTGTGTTCATCTTGGATACTCATTA 59.447 37.037 0.00 0.00 37.61 1.90
800 835 9.113838 GTTGTGTTCATCTTGGATACTCATTAT 57.886 33.333 0.00 0.00 37.61 1.28
802 837 9.764363 TGTGTTCATCTTGGATACTCATTATAC 57.236 33.333 0.00 0.00 37.61 1.47
803 838 9.988815 GTGTTCATCTTGGATACTCATTATACT 57.011 33.333 0.00 0.00 37.61 2.12
820 855 9.056005 TCATTATACTTTGTATCCACTTGATGC 57.944 33.333 0.00 0.00 36.68 3.91
821 856 9.060347 CATTATACTTTGTATCCACTTGATGCT 57.940 33.333 0.00 0.00 37.04 3.79
824 859 8.839310 ATACTTTGTATCCACTTGATGCTATC 57.161 34.615 0.00 0.00 37.04 2.08
825 860 6.893583 ACTTTGTATCCACTTGATGCTATCT 58.106 36.000 0.00 0.00 37.04 1.98
826 861 7.341805 ACTTTGTATCCACTTGATGCTATCTT 58.658 34.615 0.00 0.00 37.04 2.40
827 862 7.831193 ACTTTGTATCCACTTGATGCTATCTTT 59.169 33.333 0.00 0.00 37.04 2.52
828 863 8.579850 TTTGTATCCACTTGATGCTATCTTTT 57.420 30.769 0.00 0.00 37.04 2.27
829 864 7.558161 TGTATCCACTTGATGCTATCTTTTG 57.442 36.000 0.00 0.00 37.04 2.44
830 865 7.337938 TGTATCCACTTGATGCTATCTTTTGA 58.662 34.615 0.00 0.00 37.04 2.69
831 866 6.939132 ATCCACTTGATGCTATCTTTTGAG 57.061 37.500 0.00 0.00 30.54 3.02
832 867 5.809001 TCCACTTGATGCTATCTTTTGAGT 58.191 37.500 0.00 0.00 0.00 3.41
833 868 6.240894 TCCACTTGATGCTATCTTTTGAGTT 58.759 36.000 0.00 0.00 0.00 3.01
834 869 7.394016 TCCACTTGATGCTATCTTTTGAGTTA 58.606 34.615 0.00 0.00 0.00 2.24
835 870 7.882791 TCCACTTGATGCTATCTTTTGAGTTAA 59.117 33.333 0.00 0.00 0.00 2.01
836 871 8.680903 CCACTTGATGCTATCTTTTGAGTTAAT 58.319 33.333 0.00 0.00 0.00 1.40
1089 1126 3.091545 CCCCTTGCAGAAATTTAGAGCA 58.908 45.455 7.38 7.38 0.00 4.26
1093 1136 2.698803 TGCAGAAATTTAGAGCAGCGA 58.301 42.857 7.38 0.00 0.00 4.93
1145 1192 2.358125 TCCGTCCATTGCACCACG 60.358 61.111 0.00 0.00 0.00 4.94
1205 1273 2.380084 TACGTAGTAACCGACGGTCT 57.620 50.000 22.00 16.44 41.63 3.85
1583 1706 2.349755 CCGACCATCCCAACGGTT 59.650 61.111 0.00 0.00 40.42 4.44
1589 1712 1.677633 CATCCCAACGGTTCCCACC 60.678 63.158 0.00 0.00 40.16 4.61
1629 1752 2.031919 CGCTGCCAACAGTACCCA 59.968 61.111 0.00 0.00 46.30 4.51
1630 1753 2.034879 CGCTGCCAACAGTACCCAG 61.035 63.158 0.00 0.00 46.30 4.45
1633 1756 2.746277 GCCAACAGTACCCAGCGG 60.746 66.667 0.00 0.00 0.00 5.52
1634 1757 2.746277 CCAACAGTACCCAGCGGC 60.746 66.667 0.00 0.00 0.00 6.53
1635 1758 3.118454 CAACAGTACCCAGCGGCG 61.118 66.667 0.51 0.51 0.00 6.46
1636 1759 3.622826 AACAGTACCCAGCGGCGT 61.623 61.111 9.37 0.00 0.00 5.68
1637 1760 2.277591 AACAGTACCCAGCGGCGTA 61.278 57.895 9.37 0.00 0.00 4.42
1730 1874 2.617274 GGTGCCAACGTTGCCTCTC 61.617 63.158 22.93 13.21 0.00 3.20
1752 1896 3.860605 CGATGCCGTCCATCCCCA 61.861 66.667 7.48 0.00 46.17 4.96
1753 1897 2.111878 GATGCCGTCCATCCCCAG 59.888 66.667 2.75 0.00 43.72 4.45
1754 1898 4.195334 ATGCCGTCCATCCCCAGC 62.195 66.667 0.00 0.00 0.00 4.85
1756 1900 4.115199 GCCGTCCATCCCCAGCTT 62.115 66.667 0.00 0.00 0.00 3.74
1757 1901 2.124570 CCGTCCATCCCCAGCTTG 60.125 66.667 0.00 0.00 0.00 4.01
1758 1902 2.825836 CGTCCATCCCCAGCTTGC 60.826 66.667 0.00 0.00 0.00 4.01
1759 1903 2.440980 GTCCATCCCCAGCTTGCC 60.441 66.667 0.00 0.00 0.00 4.52
1760 1904 2.614969 TCCATCCCCAGCTTGCCT 60.615 61.111 0.00 0.00 0.00 4.75
1761 1905 1.307778 TCCATCCCCAGCTTGCCTA 60.308 57.895 0.00 0.00 0.00 3.93
1762 1906 0.918799 TCCATCCCCAGCTTGCCTAA 60.919 55.000 0.00 0.00 0.00 2.69
1763 1907 0.753111 CCATCCCCAGCTTGCCTAAC 60.753 60.000 0.00 0.00 0.00 2.34
1764 1908 0.257039 CATCCCCAGCTTGCCTAACT 59.743 55.000 0.00 0.00 0.00 2.24
1765 1909 1.002857 ATCCCCAGCTTGCCTAACTT 58.997 50.000 0.00 0.00 0.00 2.66
1766 1910 0.038166 TCCCCAGCTTGCCTAACTTG 59.962 55.000 0.00 0.00 0.00 3.16
1767 1911 1.598701 CCCCAGCTTGCCTAACTTGC 61.599 60.000 0.00 0.00 0.00 4.01
1768 1912 1.598701 CCCAGCTTGCCTAACTTGCC 61.599 60.000 0.00 0.00 0.00 4.52
1769 1913 0.895100 CCAGCTTGCCTAACTTGCCA 60.895 55.000 0.00 0.00 0.00 4.92
1770 1914 0.242017 CAGCTTGCCTAACTTGCCAC 59.758 55.000 0.00 0.00 0.00 5.01
1771 1915 0.111253 AGCTTGCCTAACTTGCCACT 59.889 50.000 0.00 0.00 0.00 4.00
1772 1916 0.242017 GCTTGCCTAACTTGCCACTG 59.758 55.000 0.00 0.00 0.00 3.66
1773 1917 0.242017 CTTGCCTAACTTGCCACTGC 59.758 55.000 0.00 0.00 38.26 4.40
1774 1918 1.178534 TTGCCTAACTTGCCACTGCC 61.179 55.000 0.00 0.00 36.33 4.85
1775 1919 2.690778 GCCTAACTTGCCACTGCCG 61.691 63.158 0.00 0.00 36.33 5.69
1776 1920 2.690778 CCTAACTTGCCACTGCCGC 61.691 63.158 0.00 0.00 36.33 6.53
1777 1921 2.671619 TAACTTGCCACTGCCGCC 60.672 61.111 0.00 0.00 36.33 6.13
1778 1922 3.190738 TAACTTGCCACTGCCGCCT 62.191 57.895 0.00 0.00 36.33 5.52
1779 1923 1.832719 TAACTTGCCACTGCCGCCTA 61.833 55.000 0.00 0.00 36.33 3.93
1780 1924 2.124570 CTTGCCACTGCCGCCTAT 60.125 61.111 0.00 0.00 36.33 2.57
1781 1925 2.438254 TTGCCACTGCCGCCTATG 60.438 61.111 0.00 0.00 36.33 2.23
1785 1929 4.838152 CACTGCCGCCTATGCCGT 62.838 66.667 0.00 0.00 0.00 5.68
1786 1930 4.530857 ACTGCCGCCTATGCCGTC 62.531 66.667 0.00 0.00 0.00 4.79
1829 2015 1.003812 GTACCAGTGCCATTACCACCA 59.996 52.381 0.00 0.00 33.75 4.17
1904 2090 4.332543 TCCCTTCCCGACCTGCCT 62.333 66.667 0.00 0.00 0.00 4.75
1970 2156 1.116536 TACCACTGCCGTCTGTTCCA 61.117 55.000 0.00 0.00 0.00 3.53
2075 2265 0.250166 GTGGTCGTTGTTGCCCTACT 60.250 55.000 0.00 0.00 0.00 2.57
2149 2342 2.040714 TGTACAAGTCAGTACGTGCG 57.959 50.000 0.00 0.00 45.66 5.34
2342 2548 8.519526 ACTGTATGTTGTTTTCTTTTCACTTGA 58.480 29.630 0.00 0.00 0.00 3.02
2387 2593 5.242838 TGCGGGAATCATAAGTTTCAAAAGT 59.757 36.000 0.00 0.00 0.00 2.66
2450 2656 4.260212 CGTGGTCGCCTTATCTTGTAATTG 60.260 45.833 0.00 0.00 0.00 2.32
2451 2657 4.634443 GTGGTCGCCTTATCTTGTAATTGT 59.366 41.667 0.00 0.00 0.00 2.71
2452 2658 5.123344 GTGGTCGCCTTATCTTGTAATTGTT 59.877 40.000 0.00 0.00 0.00 2.83
2453 2659 5.353123 TGGTCGCCTTATCTTGTAATTGTTC 59.647 40.000 0.00 0.00 0.00 3.18
2454 2660 5.353123 GGTCGCCTTATCTTGTAATTGTTCA 59.647 40.000 0.00 0.00 0.00 3.18
2455 2661 6.456988 GGTCGCCTTATCTTGTAATTGTTCAG 60.457 42.308 0.00 0.00 0.00 3.02
2456 2662 5.584649 TCGCCTTATCTTGTAATTGTTCAGG 59.415 40.000 0.00 0.00 0.00 3.86
2457 2663 5.354234 CGCCTTATCTTGTAATTGTTCAGGT 59.646 40.000 0.00 0.00 0.00 4.00
2479 2685 1.619654 TCTGTCATGGTTGCCTTTGG 58.380 50.000 0.00 0.00 0.00 3.28
2637 2844 6.476706 TGAATTATGTGACTCTTATCTGCGTG 59.523 38.462 0.00 0.00 0.00 5.34
2642 2849 2.760650 TGACTCTTATCTGCGTGTGGAT 59.239 45.455 0.00 0.00 0.00 3.41
2643 2850 3.195610 TGACTCTTATCTGCGTGTGGATT 59.804 43.478 0.00 0.00 0.00 3.01
2725 2932 8.846943 AATAACCGATGCATTCATATAGTTGA 57.153 30.769 0.00 0.00 31.96 3.18
2726 2933 9.453572 AATAACCGATGCATTCATATAGTTGAT 57.546 29.630 0.00 0.00 31.96 2.57
2727 2934 6.732531 ACCGATGCATTCATATAGTTGATG 57.267 37.500 0.00 0.00 31.96 3.07
2728 2935 5.122869 ACCGATGCATTCATATAGTTGATGC 59.877 40.000 0.00 0.00 34.03 3.91
2729 2936 5.122711 CCGATGCATTCATATAGTTGATGCA 59.877 40.000 11.15 11.15 40.72 3.96
2730 2937 6.183360 CCGATGCATTCATATAGTTGATGCAT 60.183 38.462 18.62 18.62 44.32 3.96
2731 2938 7.248437 CGATGCATTCATATAGTTGATGCATT 58.752 34.615 19.30 7.20 43.19 3.56
2732 2939 7.428472 CGATGCATTCATATAGTTGATGCATTC 59.572 37.037 19.30 12.95 43.19 2.67
2733 2940 7.513371 TGCATTCATATAGTTGATGCATTCA 57.487 32.000 0.00 0.00 36.32 2.57
2734 2941 8.117813 TGCATTCATATAGTTGATGCATTCAT 57.882 30.769 0.00 0.00 36.32 2.57
2735 2942 9.233649 TGCATTCATATAGTTGATGCATTCATA 57.766 29.630 0.00 0.00 36.32 2.15
2929 3148 6.260714 GCCACATCACATCATACATGTTCTAA 59.739 38.462 2.30 0.00 0.00 2.10
2974 3199 9.127006 CTTCTCATATCTATGTCATCTTTGTCG 57.873 37.037 0.00 0.00 35.26 4.35
2990 3215 3.552604 TGTCGCACTTTTATCTTTGCC 57.447 42.857 0.00 0.00 0.00 4.52
2996 3221 4.142988 CGCACTTTTATCTTTGCCGAGTTA 60.143 41.667 0.00 0.00 0.00 2.24
2997 3222 5.086727 GCACTTTTATCTTTGCCGAGTTAC 58.913 41.667 0.00 0.00 0.00 2.50
3006 3231 5.657474 TCTTTGCCGAGTTACTATTAGTGG 58.343 41.667 6.60 0.16 0.00 4.00
3046 3271 7.708752 GGTCCAATTTCACAAATAAGAAACACA 59.291 33.333 0.00 0.00 36.65 3.72
3065 3290 7.878477 AACACATTTGAGCATCTTTTACATG 57.122 32.000 0.00 0.00 34.92 3.21
3066 3291 5.865552 ACACATTTGAGCATCTTTTACATGC 59.134 36.000 0.00 0.00 46.05 4.06
3076 3301 7.539712 GCATCTTTTACATGCACTAGTAGAA 57.460 36.000 3.59 0.00 45.19 2.10
3077 3302 7.974675 GCATCTTTTACATGCACTAGTAGAAA 58.025 34.615 3.59 0.00 45.19 2.52
3078 3303 8.450964 GCATCTTTTACATGCACTAGTAGAAAA 58.549 33.333 3.59 0.00 45.19 2.29
3081 3306 8.999431 TCTTTTACATGCACTAGTAGAAAAAGG 58.001 33.333 3.59 7.32 0.00 3.11
3082 3307 7.681939 TTTACATGCACTAGTAGAAAAAGGG 57.318 36.000 3.59 0.00 0.00 3.95
3083 3308 5.242795 ACATGCACTAGTAGAAAAAGGGT 57.757 39.130 3.59 0.00 0.00 4.34
3084 3309 5.246307 ACATGCACTAGTAGAAAAAGGGTC 58.754 41.667 3.59 0.00 0.00 4.46
3085 3310 4.967084 TGCACTAGTAGAAAAAGGGTCA 57.033 40.909 3.59 0.00 0.00 4.02
3086 3311 5.499004 TGCACTAGTAGAAAAAGGGTCAT 57.501 39.130 3.59 0.00 0.00 3.06
3087 3312 5.488341 TGCACTAGTAGAAAAAGGGTCATC 58.512 41.667 3.59 0.00 0.00 2.92
3088 3313 5.248477 TGCACTAGTAGAAAAAGGGTCATCT 59.752 40.000 3.59 0.00 0.00 2.90
3089 3314 5.582665 GCACTAGTAGAAAAAGGGTCATCTG 59.417 44.000 3.59 0.00 0.00 2.90
3090 3315 6.702329 CACTAGTAGAAAAAGGGTCATCTGT 58.298 40.000 3.59 0.00 0.00 3.41
3091 3316 6.814146 CACTAGTAGAAAAAGGGTCATCTGTC 59.186 42.308 3.59 0.00 0.00 3.51
3092 3317 5.167303 AGTAGAAAAAGGGTCATCTGTCC 57.833 43.478 0.00 0.00 0.00 4.02
3093 3318 3.441500 AGAAAAAGGGTCATCTGTCCC 57.558 47.619 4.52 4.52 42.66 4.46
3094 3319 2.084546 GAAAAAGGGTCATCTGTCCCG 58.915 52.381 6.82 0.00 46.13 5.14
3095 3320 0.328258 AAAAGGGTCATCTGTCCCGG 59.672 55.000 6.82 0.00 46.13 5.73
3096 3321 0.840722 AAAGGGTCATCTGTCCCGGT 60.841 55.000 0.00 0.00 46.13 5.28
3097 3322 0.840722 AAGGGTCATCTGTCCCGGTT 60.841 55.000 0.00 0.00 46.13 4.44
3098 3323 1.078426 GGGTCATCTGTCCCGGTTG 60.078 63.158 0.00 0.00 33.91 3.77
3099 3324 1.078426 GGTCATCTGTCCCGGTTGG 60.078 63.158 0.00 0.00 0.00 3.77
3100 3325 1.677552 GTCATCTGTCCCGGTTGGT 59.322 57.895 0.00 0.00 34.77 3.67
3101 3326 0.899720 GTCATCTGTCCCGGTTGGTA 59.100 55.000 0.00 0.00 34.77 3.25
3102 3327 1.276989 GTCATCTGTCCCGGTTGGTAA 59.723 52.381 0.00 0.00 34.77 2.85
3103 3328 1.553248 TCATCTGTCCCGGTTGGTAAG 59.447 52.381 0.00 0.00 34.77 2.34
3104 3329 0.909623 ATCTGTCCCGGTTGGTAAGG 59.090 55.000 0.00 0.00 34.77 2.69
3105 3330 1.196104 TCTGTCCCGGTTGGTAAGGG 61.196 60.000 0.00 0.00 46.40 3.95
3106 3331 2.045634 GTCCCGGTTGGTAAGGGC 60.046 66.667 0.00 0.00 44.70 5.19
3107 3332 3.332385 TCCCGGTTGGTAAGGGCC 61.332 66.667 0.00 0.00 44.70 5.80
3108 3333 3.335729 CCCGGTTGGTAAGGGCCT 61.336 66.667 0.00 0.00 38.51 5.19
3109 3334 2.761160 CCGGTTGGTAAGGGCCTT 59.239 61.111 24.44 24.44 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.628333 GTCAGGTTAATCGAATCCAAACGA 59.372 41.667 0.00 0.00 42.49 3.85
114 115 2.542020 TGAACCTCTGAATGCGTGAA 57.458 45.000 0.00 0.00 0.00 3.18
152 153 9.541143 TTTACTGGAACCTTTGATTTTCAAATC 57.459 29.630 5.46 5.46 44.37 2.17
168 169 8.915654 CATGCAGATTTTAACTTTTACTGGAAC 58.084 33.333 0.00 0.00 0.00 3.62
174 175 9.855021 ATACCACATGCAGATTTTAACTTTTAC 57.145 29.630 0.00 0.00 0.00 2.01
190 192 2.614057 CCTCTCCGAAAATACCACATGC 59.386 50.000 0.00 0.00 0.00 4.06
201 203 1.000955 GAGCACAACTCCTCTCCGAAA 59.999 52.381 0.00 0.00 39.75 3.46
221 223 3.529533 AGGAGCGAGATTGTCTTTGATG 58.470 45.455 0.00 0.00 0.00 3.07
223 225 2.416027 CGAGGAGCGAGATTGTCTTTGA 60.416 50.000 0.00 0.00 44.57 2.69
241 243 3.641437 TGTTTCCTTGCCAATTTCGAG 57.359 42.857 0.00 0.00 0.00 4.04
304 308 3.430218 CGAGTGGACTTGCACTAGAAAAG 59.570 47.826 3.06 0.00 0.00 2.27
322 328 5.220815 GGATGATTGACTACGTAGAACGAGT 60.221 44.000 28.74 7.96 46.05 4.18
324 330 4.637091 TGGATGATTGACTACGTAGAACGA 59.363 41.667 28.74 19.74 46.05 3.85
360 366 3.958018 ACACTTGTGGGCGGATATAAAA 58.042 40.909 5.72 0.00 0.00 1.52
398 405 9.334947 GGTCTAAACTTATTTGGAATACCTACC 57.665 37.037 0.00 0.00 37.09 3.18
401 408 6.541278 GCGGTCTAAACTTATTTGGAATACCT 59.459 38.462 0.00 0.00 37.09 3.08
415 430 4.141779 CCACCCTTATAAGCGGTCTAAACT 60.142 45.833 17.79 0.00 30.38 2.66
423 438 1.210967 TGTTCCCACCCTTATAAGCGG 59.789 52.381 6.99 11.75 0.00 5.52
441 456 5.165961 AGCGACCATAATAAGGCATATGT 57.834 39.130 4.29 0.00 0.00 2.29
469 484 9.274065 GCCATTAAAAACTAACTCATTTCTACG 57.726 33.333 0.00 0.00 0.00 3.51
533 553 0.666913 ACCATATACGAAGCGAGCGT 59.333 50.000 6.76 6.76 45.01 5.07
535 555 2.708386 AGACCATATACGAAGCGAGC 57.292 50.000 0.00 0.00 0.00 5.03
572 592 3.531538 TGCCTTGAATAGCGGTTAGAAG 58.468 45.455 0.00 0.00 0.00 2.85
576 596 2.027561 ACACTGCCTTGAATAGCGGTTA 60.028 45.455 0.00 0.00 46.31 2.85
593 613 1.519408 GTTCCAACCGCATACACACT 58.481 50.000 0.00 0.00 0.00 3.55
614 634 0.555769 TGAAAACCTCCTTGGCCACT 59.444 50.000 3.88 0.00 40.22 4.00
670 690 3.266772 TGCCTATGTTGAAGGAGGTGATT 59.733 43.478 0.00 0.00 36.08 2.57
748 782 8.504005 CCAAATACGAACAGTCTAACAAAAGAT 58.496 33.333 0.00 0.00 0.00 2.40
749 783 7.496591 ACCAAATACGAACAGTCTAACAAAAGA 59.503 33.333 0.00 0.00 0.00 2.52
750 784 7.636326 ACCAAATACGAACAGTCTAACAAAAG 58.364 34.615 0.00 0.00 0.00 2.27
757 792 5.603596 ACACAACCAAATACGAACAGTCTA 58.396 37.500 0.00 0.00 0.00 2.59
763 798 5.997385 AGATGAACACAACCAAATACGAAC 58.003 37.500 0.00 0.00 0.00 3.95
806 841 7.497249 ACTCAAAAGATAGCATCAAGTGGATAC 59.503 37.037 0.00 0.00 33.95 2.24
807 842 7.568349 ACTCAAAAGATAGCATCAAGTGGATA 58.432 34.615 0.00 0.00 33.95 2.59
808 843 6.421485 ACTCAAAAGATAGCATCAAGTGGAT 58.579 36.000 0.00 0.00 36.39 3.41
809 844 5.809001 ACTCAAAAGATAGCATCAAGTGGA 58.191 37.500 0.00 0.00 0.00 4.02
810 845 6.506500 AACTCAAAAGATAGCATCAAGTGG 57.493 37.500 0.00 0.00 0.00 4.00
863 898 3.307904 GCCACCTTACCTTGGTTTAGCTA 60.308 47.826 0.00 0.00 35.28 3.32
878 913 2.607499 TCATGATTTTGTGGCCACCTT 58.393 42.857 32.62 14.63 0.00 3.50
1099 1142 1.691976 TGTCCATCTTATAGCCCACGG 59.308 52.381 0.00 0.00 0.00 4.94
1161 1208 4.345257 TCAGTTGCTCTCTTGGACTACTTT 59.655 41.667 0.00 0.00 0.00 2.66
1391 1478 4.681978 GGCACCGTCGGCACTTCT 62.682 66.667 12.28 0.00 0.00 2.85
1430 1517 2.033448 GGGATGGTTGGCACGACA 59.967 61.111 0.00 0.00 0.00 4.35
1634 1757 4.487412 GGGACGGTCGGCACTACG 62.487 72.222 1.43 0.00 0.00 3.51
1747 1891 0.038166 CAAGTTAGGCAAGCTGGGGA 59.962 55.000 0.00 0.00 0.00 4.81
1748 1892 1.598701 GCAAGTTAGGCAAGCTGGGG 61.599 60.000 0.00 0.00 0.00 4.96
1749 1893 1.598701 GGCAAGTTAGGCAAGCTGGG 61.599 60.000 0.00 0.00 0.00 4.45
1750 1894 0.895100 TGGCAAGTTAGGCAAGCTGG 60.895 55.000 0.00 0.00 41.47 4.85
1751 1895 0.242017 GTGGCAAGTTAGGCAAGCTG 59.758 55.000 0.00 0.00 46.19 4.24
1752 1896 0.111253 AGTGGCAAGTTAGGCAAGCT 59.889 50.000 0.00 0.00 46.19 3.74
1753 1897 0.242017 CAGTGGCAAGTTAGGCAAGC 59.758 55.000 0.00 0.00 46.19 4.01
1754 1898 0.242017 GCAGTGGCAAGTTAGGCAAG 59.758 55.000 0.00 2.36 46.19 4.01
1755 1899 1.178534 GGCAGTGGCAAGTTAGGCAA 61.179 55.000 12.58 0.00 46.19 4.52
1756 1900 1.603455 GGCAGTGGCAAGTTAGGCA 60.603 57.895 12.58 0.00 43.71 4.75
1757 1901 2.690778 CGGCAGTGGCAAGTTAGGC 61.691 63.158 17.80 0.00 43.71 3.93
1758 1902 2.690778 GCGGCAGTGGCAAGTTAGG 61.691 63.158 17.80 0.00 43.71 2.69
1759 1903 2.690778 GGCGGCAGTGGCAAGTTAG 61.691 63.158 17.80 0.00 43.71 2.34
1760 1904 1.832719 TAGGCGGCAGTGGCAAGTTA 61.833 55.000 17.80 0.59 43.71 2.24
1761 1905 2.484287 ATAGGCGGCAGTGGCAAGTT 62.484 55.000 17.80 1.56 43.71 2.66
1762 1906 2.971598 ATAGGCGGCAGTGGCAAGT 61.972 57.895 17.80 2.22 43.71 3.16
1763 1907 2.124570 ATAGGCGGCAGTGGCAAG 60.125 61.111 17.80 2.15 43.71 4.01
1764 1908 2.438254 CATAGGCGGCAGTGGCAA 60.438 61.111 17.80 0.00 43.71 4.52
1775 1919 2.032681 GGGATGGACGGCATAGGC 59.967 66.667 0.00 0.00 40.13 3.93
1776 1920 2.750350 GGGGATGGACGGCATAGG 59.250 66.667 0.00 0.00 0.00 2.57
1777 1921 2.343758 CGGGGATGGACGGCATAG 59.656 66.667 0.00 0.00 0.00 2.23
1778 1922 3.238497 CCGGGGATGGACGGCATA 61.238 66.667 0.00 0.00 43.96 3.14
1783 1927 4.157120 GGTCACCGGGGATGGACG 62.157 72.222 11.11 0.00 0.00 4.79
1784 1928 2.687566 AGGTCACCGGGGATGGAC 60.688 66.667 11.11 6.81 0.00 4.02
1785 1929 2.687200 CAGGTCACCGGGGATGGA 60.687 66.667 11.11 0.00 0.00 3.41
1786 1930 4.489771 GCAGGTCACCGGGGATGG 62.490 72.222 11.11 3.35 0.00 3.51
1787 1931 4.489771 GGCAGGTCACCGGGGATG 62.490 72.222 11.11 6.24 0.00 3.51
2179 2373 1.508632 ATAGACCACACGCACACAAC 58.491 50.000 0.00 0.00 0.00 3.32
2369 2575 8.962884 AAGGCAAACTTTTGAAACTTATGATT 57.037 26.923 5.87 0.00 40.55 2.57
2387 2593 3.570550 ACATACGTAAAGGCAAAGGCAAA 59.429 39.130 0.00 0.00 43.71 3.68
2450 2656 2.851195 ACCATGACAGAACACCTGAAC 58.149 47.619 0.00 0.00 45.78 3.18
2451 2657 3.213506 CAACCATGACAGAACACCTGAA 58.786 45.455 0.00 0.00 45.78 3.02
2452 2658 2.849942 CAACCATGACAGAACACCTGA 58.150 47.619 0.00 0.00 45.78 3.86
2454 2660 1.609208 GCAACCATGACAGAACACCT 58.391 50.000 0.00 0.00 0.00 4.00
2455 2661 0.598065 GGCAACCATGACAGAACACC 59.402 55.000 0.00 0.00 33.41 4.16
2456 2662 1.609208 AGGCAACCATGACAGAACAC 58.391 50.000 0.00 0.00 36.86 3.32
2457 2663 2.361757 CAAAGGCAACCATGACAGAACA 59.638 45.455 0.00 0.00 36.86 3.18
2736 2943 9.483489 TGGAGTAACAACCTAAGATATCAACTA 57.517 33.333 5.32 0.00 0.00 2.24
2964 3189 6.183359 GCAAAGATAAAAGTGCGACAAAGATG 60.183 38.462 0.00 0.00 0.00 2.90
2974 3199 3.831715 ACTCGGCAAAGATAAAAGTGC 57.168 42.857 0.00 0.00 36.24 4.40
2996 3221 8.714906 ACCAGCATTTATAGTTCCACTAATAGT 58.285 33.333 0.00 0.00 33.89 2.12
2997 3222 9.209175 GACCAGCATTTATAGTTCCACTAATAG 57.791 37.037 0.00 0.00 33.89 1.73
3006 3231 7.702348 GTGAAATTGGACCAGCATTTATAGTTC 59.298 37.037 4.45 0.00 0.00 3.01
3016 3241 5.538053 TCTTATTTGTGAAATTGGACCAGCA 59.462 36.000 0.00 0.00 32.38 4.41
3046 3271 6.276832 AGTGCATGTAAAAGATGCTCAAAT 57.723 33.333 9.97 0.00 45.45 2.32
3052 3277 7.539712 TTCTACTAGTGCATGTAAAAGATGC 57.460 36.000 5.39 2.32 45.45 3.91
3065 3290 5.582665 CAGATGACCCTTTTTCTACTAGTGC 59.417 44.000 5.39 0.00 0.00 4.40
3066 3291 6.702329 ACAGATGACCCTTTTTCTACTAGTG 58.298 40.000 5.39 0.00 0.00 2.74
3067 3292 6.070710 GGACAGATGACCCTTTTTCTACTAGT 60.071 42.308 0.00 0.00 0.00 2.57
3068 3293 6.342111 GGACAGATGACCCTTTTTCTACTAG 58.658 44.000 0.00 0.00 0.00 2.57
3069 3294 5.189145 GGGACAGATGACCCTTTTTCTACTA 59.811 44.000 12.40 0.00 44.84 1.82
3070 3295 4.019231 GGGACAGATGACCCTTTTTCTACT 60.019 45.833 12.40 0.00 44.84 2.57
3071 3296 4.262617 GGGACAGATGACCCTTTTTCTAC 58.737 47.826 12.40 0.00 44.84 2.59
3072 3297 3.055385 CGGGACAGATGACCCTTTTTCTA 60.055 47.826 16.56 0.00 45.84 2.10
3073 3298 2.290323 CGGGACAGATGACCCTTTTTCT 60.290 50.000 16.56 0.00 45.84 2.52
3074 3299 2.084546 CGGGACAGATGACCCTTTTTC 58.915 52.381 16.56 0.00 45.84 2.29
3075 3300 1.271926 CCGGGACAGATGACCCTTTTT 60.272 52.381 16.56 0.00 45.84 1.94
3076 3301 0.328258 CCGGGACAGATGACCCTTTT 59.672 55.000 16.56 0.00 45.84 2.27
3077 3302 0.840722 ACCGGGACAGATGACCCTTT 60.841 55.000 16.56 2.55 45.84 3.11
3078 3303 0.840722 AACCGGGACAGATGACCCTT 60.841 55.000 16.56 4.36 45.84 3.95
3079 3304 1.229529 AACCGGGACAGATGACCCT 60.230 57.895 16.56 0.00 45.84 4.34
3080 3305 1.078426 CAACCGGGACAGATGACCC 60.078 63.158 6.32 9.97 44.81 4.46
3081 3306 1.078426 CCAACCGGGACAGATGACC 60.078 63.158 6.32 0.00 40.01 4.02
3082 3307 0.899720 TACCAACCGGGACAGATGAC 59.100 55.000 6.32 0.00 41.15 3.06
3083 3308 1.553248 CTTACCAACCGGGACAGATGA 59.447 52.381 6.32 0.00 41.15 2.92
3084 3309 1.406887 CCTTACCAACCGGGACAGATG 60.407 57.143 6.32 0.00 41.15 2.90
3085 3310 0.909623 CCTTACCAACCGGGACAGAT 59.090 55.000 6.32 0.00 41.15 2.90
3086 3311 1.196104 CCCTTACCAACCGGGACAGA 61.196 60.000 6.32 0.00 40.55 3.41
3087 3312 1.298667 CCCTTACCAACCGGGACAG 59.701 63.158 6.32 0.00 40.55 3.51
3088 3313 2.897762 GCCCTTACCAACCGGGACA 61.898 63.158 6.32 0.00 40.55 4.02
3089 3314 2.045634 GCCCTTACCAACCGGGAC 60.046 66.667 6.32 0.00 40.55 4.46
3090 3315 3.332385 GGCCCTTACCAACCGGGA 61.332 66.667 6.32 0.00 40.55 5.14
3091 3316 2.914310 AAGGCCCTTACCAACCGGG 61.914 63.158 6.32 0.00 44.81 5.73
3092 3317 2.761160 AAGGCCCTTACCAACCGG 59.239 61.111 0.00 0.00 38.77 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.