AutoCloner

Multiple sequence alignment - TraesCS5D01G426400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G426400	chr5D	100.000	2900	0	0	1	2900	484801635	484804534	0.000000e+00	5356.0
1	TraesCS5D01G426400	chr4D	98.505	2809	38	3	94	2899	96197431	96200238	0.000000e+00	4951.0
2	TraesCS5D01G426400	chr4D	93.010	1030	62	7	880	1902	69500501	69499475	0.000000e+00	1495.0
3	TraesCS5D01G426400	chr4D	91.774	1009	62	7	1905	2897	69499249	69498246	0.000000e+00	1384.0
4	TraesCS5D01G426400	chr2D	97.721	2808	46	3	94	2900	75842642	75839852	0.000000e+00	4815.0
5	TraesCS5D01G426400	chr3D	91.796	1158	65	18	880	2010	43649843	43648689	0.000000e+00	1585.0
6	TraesCS5D01G426400	chr3D	92.724	1017	57	6	1901	2900	43648757	43647741	0.000000e+00	1452.0
7	TraesCS5D01G426400	chr3D	81.486	821	121	20	2095	2900	536031412	536032216	0.000000e+00	645.0
8	TraesCS5D01G426400	chr3D	88.223	484	46	9	96	576	43650522	43650047	4.190000e-158	568.0
9	TraesCS5D01G426400	chr3D	95.000	100	4	1	1	99	500192780	500192879	3.870000e-34	156.0
10	TraesCS5D01G426400	chr2B	91.451	1158	69	20	880	2010	59016201	59017355	0.000000e+00	1563.0
11	TraesCS5D01G426400	chr2B	87.340	861	100	5	978	1838	335389004	335388153	0.000000e+00	977.0
12	TraesCS5D01G426400	chr2B	89.597	769	61	9	1901	2653	335387292	335386527	0.000000e+00	959.0
13	TraesCS5D01G426400	chr2B	94.842	601	31	0	2297	2897	59017368	59017968	0.000000e+00	939.0
14	TraesCS5D01G426400	chr2B	86.562	573	58	13	96	663	794792489	794791931	5.310000e-172	614.0
15	TraesCS5D01G426400	chr2B	81.965	682	87	29	96	770	59015503	59016155	1.970000e-151	545.0
16	TraesCS5D01G426400	chr2B	92.565	269	20	0	2632	2900	335373641	335373373	1.260000e-103	387.0
17	TraesCS5D01G426400	chr2B	89.899	99	10	0	1915	2013	335387319	335387221	8.430000e-26	128.0
18	TraesCS5D01G426400	chr7B	91.020	1069	74	15	967	2013	635933254	635932186	0.000000e+00	1423.0
19	TraesCS5D01G426400	chr7B	91.896	617	48	2	1900	2514	635932176	635931560	0.000000e+00	861.0
20	TraesCS5D01G426400	chr7B	94.203	552	31	1	949	1500	50357801	50358351	0.000000e+00	841.0
21	TraesCS5D01G426400	chr7B	91.150	113	10	0	1901	2013	635932257	635932145	1.390000e-33	154.0
22	TraesCS5D01G426400	chr7D	91.913	1014	65	8	1901	2897	442672723	442673736	0.000000e+00	1402.0
23	TraesCS5D01G426400	chr7D	85.861	488	44	16	93	576	442671764	442672230	2.010000e-136	496.0
24	TraesCS5D01G426400	chr7D	84.221	488	54	14	92	576	601496201	601495734	1.230000e-123	453.0
25	TraesCS5D01G426400	chr7D	96.000	100	3	1	1	99	559780839	559780740	8.320000e-36	161.0
26	TraesCS5D01G426400	chr7D	78.295	129	20	6	880	1003	601495531	601495406	3.100000e-10	76.8
27	TraesCS5D01G426400	chr4B	85.617	883	96	16	1157	2016	184401456	184400582	0.000000e+00	898.0
28	TraesCS5D01G426400	chr4B	85.841	113	14	1	1901	2013	184400654	184400544	5.080000e-23	119.0
29	TraesCS5D01G426400	chr5B	81.296	679	96	27	94	766	402755217	402755870	3.310000e-144	521.0
30	TraesCS5D01G426400	chr3B	86.574	432	47	9	108	536	96871960	96871537	1.570000e-127	466.0
31	TraesCS5D01G426400	chr3B	96.000	100	3	1	1	99	17500886	17500787	8.320000e-36	161.0
32	TraesCS5D01G426400	chr3B	96.000	100	3	1	1	99	116067930	116067831	8.320000e-36	161.0
33	TraesCS5D01G426400	chr3B	96.000	100	3	1	1	99	768017470	768017569	8.320000e-36	161.0
34	TraesCS5D01G426400	chr3B	96.000	100	3	1	1	99	780621267	780621168	8.320000e-36	161.0
35	TraesCS5D01G426400	chr3B	100.000	28	0	0	872	899	661052150	661052177	5.000000e-03	52.8
36	TraesCS5D01G426400	chrUn	85.238	420	38	13	1901	2300	85426422	85426837	7.480000e-111	411.0
37	TraesCS5D01G426400	chrUn	85.238	420	38	13	1901	2300	85970076	85969661	7.480000e-111	411.0
38	TraesCS5D01G426400	chrUn	96.000	100	3	1	1	99	29531970	29532069	8.320000e-36	161.0
39	TraesCS5D01G426400	chr3A	81.818	330	50	6	2580	2900	671682566	671682238	4.760000e-68	268.0
40	TraesCS5D01G426400	chr1B	96.000	100	3	1	1	99	13438800	13438701	8.320000e-36	161.0
41	TraesCS5D01G426400	chr6D	94.792	96	5	0	1	96	58171911	58172006	1.800000e-32	150.0
42	TraesCS5D01G426400	chr4A	100.000	28	0	0	872	899	647550283	647550256	5.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G426400	chr5D	484801635	484804534	2899	False	5356.000000	5356	100.000000	1	2900	1	chr5D.!!$F1	2899
1	TraesCS5D01G426400	chr4D	96197431	96200238	2807	False	4951.000000	4951	98.505000	94	2899	1	chr4D.!!$F1	2805
2	TraesCS5D01G426400	chr4D	69498246	69500501	2255	True	1439.500000	1495	92.392000	880	2897	2	chr4D.!!$R1	2017
3	TraesCS5D01G426400	chr2D	75839852	75842642	2790	True	4815.000000	4815	97.721000	94	2900	1	chr2D.!!$R1	2806
4	TraesCS5D01G426400	chr3D	43647741	43650522	2781	True	1201.666667	1585	90.914333	96	2900	3	chr3D.!!$R1	2804
5	TraesCS5D01G426400	chr3D	536031412	536032216	804	False	645.000000	645	81.486000	2095	2900	1	chr3D.!!$F2	805
6	TraesCS5D01G426400	chr2B	59015503	59017968	2465	False	1015.666667	1563	89.419333	96	2897	3	chr2B.!!$F1	2801
7	TraesCS5D01G426400	chr2B	335386527	335389004	2477	True	688.000000	977	88.945333	978	2653	3	chr2B.!!$R3	1675
8	TraesCS5D01G426400	chr2B	794791931	794792489	558	True	614.000000	614	86.562000	96	663	1	chr2B.!!$R2	567
9	TraesCS5D01G426400	chr7B	50357801	50358351	550	False	841.000000	841	94.203000	949	1500	1	chr7B.!!$F1	551
10	TraesCS5D01G426400	chr7B	635931560	635933254	1694	True	812.666667	1423	91.355333	967	2514	3	chr7B.!!$R1	1547
11	TraesCS5D01G426400	chr7D	442671764	442673736	1972	False	949.000000	1402	88.887000	93	2897	2	chr7D.!!$F1	2804
12	TraesCS5D01G426400	chr7D	601495406	601496201	795	True	264.900000	453	81.258000	92	1003	2	chr7D.!!$R2	911
13	TraesCS5D01G426400	chr4B	184400544	184401456	912	True	508.500000	898	85.729000	1157	2016	2	chr4B.!!$R1	859
14	TraesCS5D01G426400	chr5B	402755217	402755870	653	False	521.000000	521	81.296000	94	766	1	chr5B.!!$F1	672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
90	91	0.108585	AGTTCATGGCACGAACAGGT	59.891	50.000	25.93	5.1	44.22	4.00	F
910	958	1.065126	GCCTTGATTGGAGCAGTAGGT	60.065	52.381	0.00	0.0	0.00	3.08	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1271	1321	0.729116	CCACCATTCGTCATCAGCAC	59.271	55.000	0.0	0.0	0.0	4.40	R
2727	3807	3.123050	CTCATGTCAAAGTCACACACGA	58.877	45.455	0.0	0.0	0.0	4.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	30	1.141234	GACCTTTAGTCCCGGCTCG	59.859	63.158	0.00	0.00	39.84	5.03
30	31	1.304713	ACCTTTAGTCCCGGCTCGA	60.305	57.895	0.00	0.00	0.00	4.04
31	32	1.321074	ACCTTTAGTCCCGGCTCGAG	61.321	60.000	8.45	8.45	0.00	4.04
32	33	1.227002	CTTTAGTCCCGGCTCGAGC	60.227	63.158	29.38	29.38	41.14	5.03
42	43	2.743928	GCTCGAGCCACCAACTGG	60.744	66.667	27.22	0.00	44.08	4.00
55	56	3.732048	CCAACTGGTACTAATGGGGTT	57.268	47.619	3.51	0.00	0.00	4.11
56	57	4.042271	CCAACTGGTACTAATGGGGTTT	57.958	45.455	3.51	0.00	0.00	3.27
57	58	3.761752	CCAACTGGTACTAATGGGGTTTG	59.238	47.826	3.51	0.00	0.00	2.93
58	59	4.507691	CCAACTGGTACTAATGGGGTTTGA	60.508	45.833	3.51	0.00	0.00	2.69
59	60	4.569719	ACTGGTACTAATGGGGTTTGAG	57.430	45.455	0.00	0.00	0.00	3.02
60	61	3.265995	ACTGGTACTAATGGGGTTTGAGG	59.734	47.826	0.00	0.00	0.00	3.86
61	62	2.025699	TGGTACTAATGGGGTTTGAGGC	60.026	50.000	0.00	0.00	0.00	4.70
62	63	2.025699	GGTACTAATGGGGTTTGAGGCA	60.026	50.000	0.00	0.00	0.00	4.75
63	64	3.372675	GGTACTAATGGGGTTTGAGGCAT	60.373	47.826	0.00	0.00	0.00	4.40
64	65	3.473113	ACTAATGGGGTTTGAGGCATT	57.527	42.857	0.00	0.00	0.00	3.56
65	66	4.601406	ACTAATGGGGTTTGAGGCATTA	57.399	40.909	0.00	0.00	0.00	1.90
66	67	4.536765	ACTAATGGGGTTTGAGGCATTAG	58.463	43.478	2.11	2.11	38.12	1.73
67	68	3.473113	AATGGGGTTTGAGGCATTAGT	57.527	42.857	0.00	0.00	0.00	2.24
68	69	4.601406	AATGGGGTTTGAGGCATTAGTA	57.399	40.909	0.00	0.00	0.00	1.82
69	70	3.359695	TGGGGTTTGAGGCATTAGTAC	57.640	47.619	0.00	0.00	0.00	2.73
70	71	2.025699	TGGGGTTTGAGGCATTAGTACC	60.026	50.000	0.00	0.00	0.00	3.34
71	72	2.025699	GGGGTTTGAGGCATTAGTACCA	60.026	50.000	0.00	0.00	0.00	3.25
72	73	3.279434	GGGTTTGAGGCATTAGTACCAG	58.721	50.000	0.00	0.00	0.00	4.00
73	74	3.308188	GGGTTTGAGGCATTAGTACCAGT	60.308	47.826	0.00	0.00	0.00	4.00
74	75	4.332828	GGTTTGAGGCATTAGTACCAGTT	58.667	43.478	0.00	0.00	0.00	3.16
75	76	4.395231	GGTTTGAGGCATTAGTACCAGTTC	59.605	45.833	0.00	0.00	0.00	3.01
76	77	4.901197	TTGAGGCATTAGTACCAGTTCA	57.099	40.909	0.00	0.00	0.00	3.18
77	78	5.435686	TTGAGGCATTAGTACCAGTTCAT	57.564	39.130	0.00	0.00	0.00	2.57
78	79	4.769688	TGAGGCATTAGTACCAGTTCATG	58.230	43.478	0.00	0.00	0.00	3.07
87	88	2.627791	CCAGTTCATGGCACGAACA	58.372	52.632	25.93	0.00	43.83	3.18
88	89	0.518636	CCAGTTCATGGCACGAACAG	59.481	55.000	25.93	18.72	43.83	3.16
89	90	0.518636	CAGTTCATGGCACGAACAGG	59.481	55.000	25.93	14.87	44.22	4.00
90	91	0.108585	AGTTCATGGCACGAACAGGT	59.891	50.000	25.93	5.10	44.22	4.00
782	828	6.369615	CCCCAAAAAGTTTCAGATTTAGCATG	59.630	38.462	0.00	0.00	0.00	4.06
788	834	9.783081	AAAAGTTTCAGATTTAGCATGGAATTT	57.217	25.926	0.00	0.00	0.00	1.82
910	958	1.065126	GCCTTGATTGGAGCAGTAGGT	60.065	52.381	0.00	0.00	0.00	3.08
1140	1190	3.715628	GAAGTTGGCTTCTTTCAGCAA	57.284	42.857	0.58	0.00	45.68	3.91
1391	1441	7.367285	TGACAAGTGCCAAATGAATTACTTAC	58.633	34.615	0.00	0.00	0.00	2.34
1758	1810	1.518056	AAGTTGTGGCATGTGGAGCG	61.518	55.000	0.00	0.00	0.00	5.03
1857	2765	1.765230	AGACTAGCGACGGGAAGAAT	58.235	50.000	0.00	0.00	0.00	2.40
2247	3318	8.428063	TCTCATGAAAAAGAAGAGAAGAGTTCT	58.572	33.333	0.00	0.00	44.21	3.01
2496	3568	9.591792	CAAGAGATCAACTGAAGTTATACATCA	57.408	33.333	0.00	0.00	36.32	3.07
2727	3807	6.777580	GGATACCCAACAAAGAATATCATGGT	59.222	38.462	0.00	0.00	0.00	3.55
2839	3919	4.816925	GTGAAGTATGCAGATAGGTTTCCC	59.183	45.833	0.00	0.00	0.00	3.97

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
6	7	1.134580	GCCGGGACTAAAGGTCTAACC	60.135	57.143	2.18	0.00	43.97	2.85
7	8	1.829849	AGCCGGGACTAAAGGTCTAAC	59.170	52.381	2.18	0.00	43.97	2.34
8	9	2.105766	GAGCCGGGACTAAAGGTCTAA	58.894	52.381	2.18	0.00	43.97	2.10
9	10	1.772836	GAGCCGGGACTAAAGGTCTA	58.227	55.000	2.18	0.00	43.97	2.59
10	11	1.321074	CGAGCCGGGACTAAAGGTCT	61.321	60.000	2.18	0.00	43.97	3.85
11	12	1.141234	CGAGCCGGGACTAAAGGTC	59.859	63.158	2.18	0.00	43.79	3.85
12	13	1.304713	TCGAGCCGGGACTAAAGGT	60.305	57.895	2.18	0.00	0.00	3.50
13	14	1.437986	CTCGAGCCGGGACTAAAGG	59.562	63.158	2.18	0.00	0.00	3.11
14	15	1.227002	GCTCGAGCCGGGACTAAAG	60.227	63.158	27.22	0.00	34.31	1.85
15	16	2.890371	GCTCGAGCCGGGACTAAA	59.110	61.111	27.22	0.00	34.31	1.85
25	26	2.743928	CCAGTTGGTGGCTCGAGC	60.744	66.667	29.38	29.38	40.39	5.03
35	36	3.732048	AACCCCATTAGTACCAGTTGG	57.268	47.619	0.00	0.00	42.17	3.77
36	37	4.658063	TCAAACCCCATTAGTACCAGTTG	58.342	43.478	0.00	0.00	0.00	3.16
37	38	4.263771	CCTCAAACCCCATTAGTACCAGTT	60.264	45.833	0.00	0.00	0.00	3.16
38	39	3.265995	CCTCAAACCCCATTAGTACCAGT	59.734	47.826	0.00	0.00	0.00	4.00
39	40	3.886123	CCTCAAACCCCATTAGTACCAG	58.114	50.000	0.00	0.00	0.00	4.00
40	41	2.025699	GCCTCAAACCCCATTAGTACCA	60.026	50.000	0.00	0.00	0.00	3.25
41	42	2.025699	TGCCTCAAACCCCATTAGTACC	60.026	50.000	0.00	0.00	0.00	3.34
42	43	3.359695	TGCCTCAAACCCCATTAGTAC	57.640	47.619	0.00	0.00	0.00	2.73
43	44	4.601406	AATGCCTCAAACCCCATTAGTA	57.399	40.909	0.00	0.00	0.00	1.82
44	45	3.473113	AATGCCTCAAACCCCATTAGT	57.527	42.857	0.00	0.00	0.00	2.24
45	46	4.536765	ACTAATGCCTCAAACCCCATTAG	58.463	43.478	14.33	14.33	46.24	1.73
46	47	4.601406	ACTAATGCCTCAAACCCCATTA	57.399	40.909	0.00	0.00	0.00	1.90
47	48	3.473113	ACTAATGCCTCAAACCCCATT	57.527	42.857	0.00	0.00	0.00	3.16
48	49	3.372675	GGTACTAATGCCTCAAACCCCAT	60.373	47.826	0.00	0.00	0.00	4.00
49	50	2.025699	GGTACTAATGCCTCAAACCCCA	60.026	50.000	0.00	0.00	0.00	4.96
50	51	2.025699	TGGTACTAATGCCTCAAACCCC	60.026	50.000	0.00	0.00	0.00	4.95
51	52	3.279434	CTGGTACTAATGCCTCAAACCC	58.721	50.000	0.00	0.00	0.00	4.11
52	53	3.951663	ACTGGTACTAATGCCTCAAACC	58.048	45.455	0.00	0.00	0.00	3.27
53	54	5.001232	TGAACTGGTACTAATGCCTCAAAC	58.999	41.667	0.00	0.00	0.00	2.93
54	55	5.235850	TGAACTGGTACTAATGCCTCAAA	57.764	39.130	0.00	0.00	0.00	2.69
55	56	4.901197	TGAACTGGTACTAATGCCTCAA	57.099	40.909	0.00	0.00	0.00	3.02
56	57	4.384098	CCATGAACTGGTACTAATGCCTCA	60.384	45.833	0.00	0.00	40.49	3.86
57	58	4.130118	CCATGAACTGGTACTAATGCCTC	58.870	47.826	0.00	0.00	40.49	4.70
58	59	4.156455	CCATGAACTGGTACTAATGCCT	57.844	45.455	0.00	0.00	40.49	4.75
70	71	0.518636	CCTGTTCGTGCCATGAACTG	59.481	55.000	25.57	24.03	42.90	3.16
71	72	0.108585	ACCTGTTCGTGCCATGAACT	59.891	50.000	25.57	7.61	42.90	3.01
72	73	1.463444	GTACCTGTTCGTGCCATGAAC	59.537	52.381	20.39	20.39	42.81	3.18
73	74	1.346395	AGTACCTGTTCGTGCCATGAA	59.654	47.619	0.00	0.00	0.00	2.57
74	75	0.973632	AGTACCTGTTCGTGCCATGA	59.026	50.000	0.00	0.00	0.00	3.07
75	76	2.665649	TAGTACCTGTTCGTGCCATG	57.334	50.000	0.00	0.00	0.00	3.66
76	77	2.093658	CCTTAGTACCTGTTCGTGCCAT	60.094	50.000	0.00	0.00	0.00	4.40
77	78	1.274167	CCTTAGTACCTGTTCGTGCCA	59.726	52.381	0.00	0.00	0.00	4.92
78	79	1.274447	ACCTTAGTACCTGTTCGTGCC	59.726	52.381	0.00	0.00	0.00	5.01
79	80	2.334838	CACCTTAGTACCTGTTCGTGC	58.665	52.381	0.00	0.00	0.00	5.34
80	81	2.929592	GCCACCTTAGTACCTGTTCGTG	60.930	54.545	0.00	0.00	0.00	4.35
81	82	1.274447	GCCACCTTAGTACCTGTTCGT	59.726	52.381	0.00	0.00	0.00	3.85
82	83	1.405121	GGCCACCTTAGTACCTGTTCG	60.405	57.143	0.00	0.00	0.00	3.95
83	84	1.907255	AGGCCACCTTAGTACCTGTTC	59.093	52.381	5.01	0.00	31.97	3.18
84	85	2.040342	AGGCCACCTTAGTACCTGTT	57.960	50.000	5.01	0.00	31.97	3.16
85	86	2.039879	CAAAGGCCACCTTAGTACCTGT	59.960	50.000	5.01	0.00	43.92	4.00
86	87	2.039879	ACAAAGGCCACCTTAGTACCTG	59.960	50.000	5.01	0.00	43.92	4.00
87	88	2.345560	ACAAAGGCCACCTTAGTACCT	58.654	47.619	5.01	0.00	43.92	3.08
88	89	2.873094	ACAAAGGCCACCTTAGTACC	57.127	50.000	5.01	0.00	43.92	3.34
89	90	4.139038	TCAAACAAAGGCCACCTTAGTAC	58.861	43.478	5.01	0.00	43.92	2.73
90	91	4.394729	CTCAAACAAAGGCCACCTTAGTA	58.605	43.478	5.01	0.00	43.92	1.82
337	338	1.305046	GACGAGGGAGAGGTTGGGA	60.305	63.158	0.00	0.00	0.00	4.37
782	828	5.623141	GCAAGGAGGAACATCAAGAAATTCC	60.623	44.000	7.34	7.34	40.87	3.01
788	834	3.072915	TCAAGCAAGGAGGAACATCAAGA	59.927	43.478	0.00	0.00	0.00	3.02
910	958	6.296026	ACACTGAAAAAGACCAATGCTACTA	58.704	36.000	0.00	0.00	0.00	1.82
1054	1104	3.883135	TCCCCTTTTCCTTCTCCTTAGT	58.117	45.455	0.00	0.00	0.00	2.24
1140	1190	3.817084	GCCTACTGTAAAGTTTTCCGGTT	59.183	43.478	0.00	0.00	0.00	4.44
1271	1321	0.729116	CCACCATTCGTCATCAGCAC	59.271	55.000	0.00	0.00	0.00	4.40
1391	1441	2.154462	AGATGTCCTTGTTTTCCTGCG	58.846	47.619	0.00	0.00	0.00	5.18
1758	1810	6.369890	TGAAGTACTCATCACTTGCTTCATTC	59.630	38.462	0.00	0.00	36.38	2.67
1857	2765	7.292356	TCTTCATACATCCTCCTAAGCCAATTA	59.708	37.037	0.00	0.00	0.00	1.40
2247	3318	3.595173	CACTGTTGTCCGGTCATTATCA	58.405	45.455	1.21	0.04	0.00	2.15
2714	3793	4.870426	GTCACACACGACCATGATATTCTT	59.130	41.667	0.00	0.00	0.00	2.52
2727	3807	3.123050	CTCATGTCAAAGTCACACACGA	58.877	45.455	0.00	0.00	0.00	4.35

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.