Multiple sequence alignment - TraesCS5D01G425500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G425500 chr5D 100.000 5278 0 0 1 5278 484295372 484290095 0.000000e+00 9747.0
1 TraesCS5D01G425500 chr5D 82.969 1462 145 54 3379 4773 484229321 484227897 0.000000e+00 1225.0
2 TraesCS5D01G425500 chr5D 82.725 822 94 21 3799 4599 484220245 484219451 0.000000e+00 688.0
3 TraesCS5D01G425500 chr5D 91.765 85 5 2 5123 5206 484227781 484227698 3.340000e-22 117.0
4 TraesCS5D01G425500 chr5A 88.442 2336 150 34 2372 4608 605770377 605768063 0.000000e+00 2708.0
5 TraesCS5D01G425500 chr5A 89.727 1431 85 23 898 2307 605771783 605770394 0.000000e+00 1772.0
6 TraesCS5D01G425500 chr5A 81.536 1419 183 53 3378 4773 605758955 605757593 0.000000e+00 1096.0
7 TraesCS5D01G425500 chr5A 95.365 561 22 3 1884 2441 605740629 605740070 0.000000e+00 889.0
8 TraesCS5D01G425500 chr5A 95.091 550 23 3 1895 2441 605716507 605715959 0.000000e+00 863.0
9 TraesCS5D01G425500 chr5A 75.670 522 82 24 411 897 632260565 632261076 8.900000e-53 219.0
10 TraesCS5D01G425500 chr5A 81.765 170 10 9 5123 5275 605756885 605756720 7.180000e-24 122.0
11 TraesCS5D01G425500 chr5B 95.719 1495 40 7 955 2441 595344143 595342665 0.000000e+00 2385.0
12 TraesCS5D01G425500 chr5B 94.943 1404 43 7 2428 3807 595340535 595339136 0.000000e+00 2174.0
13 TraesCS5D01G425500 chr5B 87.039 787 58 13 3843 4608 595339136 595338373 0.000000e+00 848.0
14 TraesCS5D01G425500 chr5B 75.096 522 85 26 411 897 648309834 648310345 8.960000e-48 202.0
15 TraesCS5D01G425500 chr5B 89.011 91 10 0 4932 5022 317057933 317057843 4.320000e-21 113.0
16 TraesCS5D01G425500 chrUn 82.399 767 90 21 3799 4545 244094418 244093677 1.250000e-175 627.0
17 TraesCS5D01G425500 chrUn 82.399 767 90 21 3799 4545 244107061 244106320 1.250000e-175 627.0
18 TraesCS5D01G425500 chrUn 82.399 767 90 20 3799 4545 262357902 262358643 1.250000e-175 627.0
19 TraesCS5D01G425500 chrUn 93.250 400 15 3 509 898 24929741 24930138 3.540000e-161 579.0
20 TraesCS5D01G425500 chrUn 97.523 323 8 0 28 350 24927865 24928187 2.150000e-153 553.0
21 TraesCS5D01G425500 chrUn 76.330 376 57 20 501 854 479475705 479475340 7.030000e-39 172.0
22 TraesCS5D01G425500 chrUn 100.000 39 0 0 386 424 24929521 24929559 7.330000e-09 73.1
23 TraesCS5D01G425500 chr7B 85.425 494 29 16 435 897 100174659 100175140 1.720000e-129 473.0
24 TraesCS5D01G425500 chr7B 93.189 323 17 3 28 350 100173014 100173331 2.230000e-128 470.0
25 TraesCS5D01G425500 chr6B 85.425 494 29 16 435 897 126723732 126723251 1.720000e-129 473.0
26 TraesCS5D01G425500 chr6B 93.189 323 17 3 28 350 126725377 126725060 2.230000e-128 470.0
27 TraesCS5D01G425500 chr6B 75.775 516 80 25 417 897 631204332 631203827 8.900000e-53 219.0
28 TraesCS5D01G425500 chr6B 75.000 516 84 25 417 897 62170825 62170320 4.170000e-46 196.0
29 TraesCS5D01G425500 chr1A 85.425 494 29 16 435 897 506673828 506674309 1.720000e-129 473.0
30 TraesCS5D01G425500 chr1A 93.189 323 17 3 28 350 506672184 506672501 2.230000e-128 470.0
31 TraesCS5D01G425500 chr7A 93.189 323 17 3 28 350 696291676 696291359 2.230000e-128 470.0
32 TraesCS5D01G425500 chr7A 85.263 285 32 4 618 898 292831693 292831971 8.650000e-73 285.0
33 TraesCS5D01G425500 chr2A 84.182 373 23 9 435 772 710366920 710367291 3.940000e-86 329.0
34 TraesCS5D01G425500 chr2A 85.759 323 30 5 28 350 61481126 61481432 1.420000e-85 327.0
35 TraesCS5D01G425500 chr2A 84.802 329 13 3 28 350 710365278 710365575 4.000000e-76 296.0
36 TraesCS5D01G425500 chr2A 90.083 121 12 0 28 148 61486301 61486181 1.970000e-34 158.0
37 TraesCS5D01G425500 chr3A 87.956 274 16 8 624 897 33644030 33644286 1.850000e-79 307.0
38 TraesCS5D01G425500 chr3A 100.000 28 0 0 4950 4977 602072472 602072445 1.000000e-02 52.8
39 TraesCS5D01G425500 chr2B 79.596 446 49 21 386 793 796155957 796156398 1.120000e-71 281.0
40 TraesCS5D01G425500 chr2B 83.137 255 29 8 4869 5113 508959386 508959636 2.470000e-53 220.0
41 TraesCS5D01G425500 chr2B 76.923 156 30 5 4928 5079 583788546 583788393 3.390000e-12 84.2
42 TraesCS5D01G425500 chr2D 82.745 255 31 8 4869 5113 430625506 430625757 1.150000e-51 215.0
43 TraesCS5D01G425500 chr2D 77.866 253 38 12 4870 5111 139025724 139025479 1.980000e-29 141.0
44 TraesCS5D01G425500 chr3D 80.460 261 40 6 4859 5112 400694378 400694634 6.980000e-44 189.0
45 TraesCS5D01G425500 chr3D 100.000 29 0 0 4952 4980 36544216 36544244 3.000000e-03 54.7
46 TraesCS5D01G425500 chr6A 83.471 121 16 3 28 145 105732605 105732486 5.590000e-20 110.0
47 TraesCS5D01G425500 chr3B 100.000 28 0 0 4950 4977 609351958 609351931 1.000000e-02 52.8
48 TraesCS5D01G425500 chr1B 86.000 50 6 1 348 396 317578087 317578038 1.000000e-02 52.8
49 TraesCS5D01G425500 chr1B 100.000 28 0 0 5090 5117 629511184 629511211 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G425500 chr5D 484290095 484295372 5277 True 9747.000000 9747 100.000000 1 5278 1 chr5D.!!$R2 5277
1 TraesCS5D01G425500 chr5D 484219451 484220245 794 True 688.000000 688 82.725000 3799 4599 1 chr5D.!!$R1 800
2 TraesCS5D01G425500 chr5D 484227698 484229321 1623 True 671.000000 1225 87.367000 3379 5206 2 chr5D.!!$R3 1827
3 TraesCS5D01G425500 chr5A 605768063 605771783 3720 True 2240.000000 2708 89.084500 898 4608 2 chr5A.!!$R4 3710
4 TraesCS5D01G425500 chr5A 605740070 605740629 559 True 889.000000 889 95.365000 1884 2441 1 chr5A.!!$R2 557
5 TraesCS5D01G425500 chr5A 605715959 605716507 548 True 863.000000 863 95.091000 1895 2441 1 chr5A.!!$R1 546
6 TraesCS5D01G425500 chr5A 605756720 605758955 2235 True 609.000000 1096 81.650500 3378 5275 2 chr5A.!!$R3 1897
7 TraesCS5D01G425500 chr5A 632260565 632261076 511 False 219.000000 219 75.670000 411 897 1 chr5A.!!$F1 486
8 TraesCS5D01G425500 chr5B 595338373 595344143 5770 True 1802.333333 2385 92.567000 955 4608 3 chr5B.!!$R2 3653
9 TraesCS5D01G425500 chr5B 648309834 648310345 511 False 202.000000 202 75.096000 411 897 1 chr5B.!!$F1 486
10 TraesCS5D01G425500 chrUn 244093677 244094418 741 True 627.000000 627 82.399000 3799 4545 1 chrUn.!!$R1 746
11 TraesCS5D01G425500 chrUn 244106320 244107061 741 True 627.000000 627 82.399000 3799 4545 1 chrUn.!!$R2 746
12 TraesCS5D01G425500 chrUn 262357902 262358643 741 False 627.000000 627 82.399000 3799 4545 1 chrUn.!!$F1 746
13 TraesCS5D01G425500 chrUn 24927865 24930138 2273 False 401.700000 579 96.924333 28 898 3 chrUn.!!$F2 870
14 TraesCS5D01G425500 chr7B 100173014 100175140 2126 False 471.500000 473 89.307000 28 897 2 chr7B.!!$F1 869
15 TraesCS5D01G425500 chr6B 126723251 126725377 2126 True 471.500000 473 89.307000 28 897 2 chr6B.!!$R3 869
16 TraesCS5D01G425500 chr6B 631203827 631204332 505 True 219.000000 219 75.775000 417 897 1 chr6B.!!$R2 480
17 TraesCS5D01G425500 chr1A 506672184 506674309 2125 False 471.500000 473 89.307000 28 897 2 chr1A.!!$F1 869
18 TraesCS5D01G425500 chr2A 710365278 710367291 2013 False 312.500000 329 84.492000 28 772 2 chr2A.!!$F2 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 2169 0.179000 CACTCTAGTCCACATGGGGC 59.821 60.0 9.95 4.5 43.70 5.80 F
982 2473 0.597377 GCAAAGGAAGTTGTTGCCCG 60.597 55.0 4.80 0.0 41.41 6.13 F
2250 3774 0.809385 CATGAGTTGCTCAGCCTTGG 59.191 55.0 0.00 0.0 44.08 3.61 F
2588 6272 2.557452 CCCACTGGTAAGGGCTCATTTT 60.557 50.0 0.00 0.0 38.44 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2128 3650 0.811616 CTGCTTCCTGTATCCGTGCC 60.812 60.000 0.00 0.00 0.00 5.01 R
2588 6272 4.437682 ACTGATGAGGTTCTGTTCCAAA 57.562 40.909 0.00 0.00 0.00 3.28 R
3891 7652 0.388659 TGTGCTTGCAACATGTTCCC 59.611 50.000 8.48 3.43 0.00 3.97 R
4423 8238 1.497286 TGACCAAACAGGCCTTAAGGT 59.503 47.619 22.55 9.36 43.14 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 181 2.420466 GTACGATTCCGGCTCCCC 59.580 66.667 0.00 0.00 40.78 4.81
350 357 3.554692 CGCCGGCTCAACGCTTAG 61.555 66.667 26.68 0.00 39.13 2.18
351 358 3.195698 GCCGGCTCAACGCTTAGG 61.196 66.667 22.15 0.00 39.13 2.69
354 361 2.269241 GGCTCAACGCTTAGGGCT 59.731 61.111 0.00 0.00 39.13 5.19
355 362 1.377333 GGCTCAACGCTTAGGGCTT 60.377 57.895 0.00 0.00 39.13 4.35
357 364 0.391793 GCTCAACGCTTAGGGCTTCT 60.392 55.000 0.00 0.00 39.13 2.85
358 365 1.946283 GCTCAACGCTTAGGGCTTCTT 60.946 52.381 0.00 0.00 39.13 2.52
359 366 2.427506 CTCAACGCTTAGGGCTTCTTT 58.572 47.619 0.00 0.00 39.13 2.52
360 367 2.151202 TCAACGCTTAGGGCTTCTTTG 58.849 47.619 0.00 0.00 39.13 2.77
361 368 2.151202 CAACGCTTAGGGCTTCTTTGA 58.849 47.619 0.00 0.00 39.13 2.69
362 369 2.749621 CAACGCTTAGGGCTTCTTTGAT 59.250 45.455 0.00 0.00 39.13 2.57
363 370 3.073274 ACGCTTAGGGCTTCTTTGATT 57.927 42.857 0.00 0.00 39.13 2.57
364 371 3.010420 ACGCTTAGGGCTTCTTTGATTC 58.990 45.455 0.00 0.00 39.13 2.52
365 372 3.009723 CGCTTAGGGCTTCTTTGATTCA 58.990 45.455 0.00 0.00 39.13 2.57
366 373 3.440173 CGCTTAGGGCTTCTTTGATTCAA 59.560 43.478 0.00 0.00 39.13 2.69
367 374 4.672801 CGCTTAGGGCTTCTTTGATTCAAC 60.673 45.833 0.00 0.00 39.13 3.18
378 579 7.754924 GCTTCTTTGATTCAACGGAATTCAATA 59.245 33.333 7.93 0.00 43.69 1.90
379 580 9.282247 CTTCTTTGATTCAACGGAATTCAATAG 57.718 33.333 7.93 0.00 43.69 1.73
380 581 7.761409 TCTTTGATTCAACGGAATTCAATAGG 58.239 34.615 7.93 0.00 43.69 2.57
384 585 8.292444 TGATTCAACGGAATTCAATAGGATTT 57.708 30.769 7.93 0.00 43.69 2.17
433 1751 2.300437 GCTGACCACTTCCACTAGAACT 59.700 50.000 0.00 0.00 0.00 3.01
505 1952 1.868251 CGGCGAGCAGAAGACGTAC 60.868 63.158 0.00 0.00 0.00 3.67
506 1953 1.516603 GGCGAGCAGAAGACGTACC 60.517 63.158 0.00 0.00 0.00 3.34
507 1954 1.507174 GCGAGCAGAAGACGTACCT 59.493 57.895 0.00 0.00 0.00 3.08
550 2017 0.247736 GCACTCCCTCTACCAGTGTG 59.752 60.000 0.00 0.00 39.86 3.82
606 2074 1.207811 TGGAAGCGAATGATCAGCTGA 59.792 47.619 20.79 20.79 41.53 4.26
664 2150 4.918201 CGGGGCCGCCTGAATCTC 62.918 72.222 15.16 0.00 0.00 2.75
676 2162 3.181480 GCCTGAATCTCACTCTAGTCCAC 60.181 52.174 0.00 0.00 0.00 4.02
683 2169 0.179000 CACTCTAGTCCACATGGGGC 59.821 60.000 9.95 4.50 43.70 5.80
913 2402 0.968405 TCCTGGCAGGAAAATTGTGC 59.032 50.000 33.38 0.00 42.51 4.57
919 2408 2.319472 GCAGGAAAATTGTGCGAAGAC 58.681 47.619 0.00 0.00 0.00 3.01
921 2410 2.223144 CAGGAAAATTGTGCGAAGACGA 59.777 45.455 0.00 0.00 42.66 4.20
982 2473 0.597377 GCAAAGGAAGTTGTTGCCCG 60.597 55.000 4.80 0.00 41.41 6.13
983 2474 0.597377 CAAAGGAAGTTGTTGCCCGC 60.597 55.000 0.00 0.00 0.00 6.13
984 2475 1.040339 AAAGGAAGTTGTTGCCCGCA 61.040 50.000 0.00 0.00 0.00 5.69
985 2476 1.734388 AAGGAAGTTGTTGCCCGCAC 61.734 55.000 0.00 0.00 0.00 5.34
986 2477 2.051345 GAAGTTGTTGCCCGCACG 60.051 61.111 0.00 0.00 0.00 5.34
987 2478 2.515057 AAGTTGTTGCCCGCACGA 60.515 55.556 0.00 0.00 0.00 4.35
988 2479 2.711185 GAAGTTGTTGCCCGCACGAC 62.711 60.000 0.00 0.00 0.00 4.34
989 2480 4.659874 GTTGTTGCCCGCACGACG 62.660 66.667 0.00 0.00 43.15 5.12
1006 2497 3.102097 GGCACGAGGTTATGCTGC 58.898 61.111 0.00 0.00 41.74 5.25
1028 2519 0.826256 GGTTCCCCAAACAGACCCAC 60.826 60.000 0.00 0.00 39.81 4.61
1041 2539 3.252284 CCCACCAGTCCACCAGCT 61.252 66.667 0.00 0.00 0.00 4.24
1754 3252 6.624021 AGGGATTACATCAGGGTAGGTAAAAT 59.376 38.462 0.00 0.00 30.41 1.82
1764 3262 4.018688 AGGGTAGGTAAAATTCAGTGACCC 60.019 45.833 0.00 0.00 43.69 4.46
1765 3263 4.263594 GGGTAGGTAAAATTCAGTGACCCA 60.264 45.833 0.00 0.00 43.00 4.51
1775 3273 6.391227 AATTCAGTGACCCAACAACTAAAG 57.609 37.500 0.00 0.00 0.00 1.85
1783 3281 5.163237 TGACCCAACAACTAAAGTAGCTTCT 60.163 40.000 0.00 0.00 0.00 2.85
1904 3402 5.009010 ACCTGCGGCTCTATAAATCAAATTG 59.991 40.000 0.00 0.00 0.00 2.32
1936 3445 1.062525 GGCGCGCCTATTTGTTGAG 59.937 57.895 41.71 0.00 0.00 3.02
2034 3556 6.500049 AGCTCCTTAGGATATGATGCTTAGTT 59.500 38.462 0.00 0.00 31.56 2.24
2035 3557 7.017056 AGCTCCTTAGGATATGATGCTTAGTTT 59.983 37.037 0.00 0.00 31.56 2.66
2036 3558 7.663493 GCTCCTTAGGATATGATGCTTAGTTTT 59.337 37.037 0.00 0.00 31.56 2.43
2037 3559 9.566432 CTCCTTAGGATATGATGCTTAGTTTTT 57.434 33.333 0.00 0.00 31.56 1.94
2128 3650 5.738118 AAACAGGAATGCACATTGTTTTG 57.262 34.783 12.14 0.00 0.00 2.44
2250 3774 0.809385 CATGAGTTGCTCAGCCTTGG 59.191 55.000 0.00 0.00 44.08 3.61
2380 3904 7.224297 ACCATTACATTCTACAACTTCACACT 58.776 34.615 0.00 0.00 0.00 3.55
2588 6272 2.557452 CCCACTGGTAAGGGCTCATTTT 60.557 50.000 0.00 0.00 38.44 1.82
2694 6385 7.665080 GTAAAATACCATGCGTCAATTCTTC 57.335 36.000 0.00 0.00 0.00 2.87
2701 6392 4.142534 CCATGCGTCAATTCTTCAGACAAT 60.143 41.667 0.00 0.00 32.68 2.71
2820 6515 6.006449 ACACCAAGCAATTAAGAGAGACAAT 58.994 36.000 0.00 0.00 0.00 2.71
2916 6611 5.796424 AATGAAGCTCACAGAACCAAAAT 57.204 34.783 0.00 0.00 0.00 1.82
3089 6816 6.759356 GCAAGGTTGTATTGGTTAAGTTTTGT 59.241 34.615 0.00 0.00 0.00 2.83
3117 6848 9.480053 AATCAAATGCATACAATATTTACCTGC 57.520 29.630 0.00 0.00 0.00 4.85
3338 7071 7.283354 TGTGTTATTCAATGGAAGTACACAACA 59.717 33.333 21.68 8.63 46.65 3.33
3372 7105 6.142320 GTCGTCATGTTTTTGGTTCTTCAATC 59.858 38.462 0.00 0.00 0.00 2.67
3489 7222 5.479027 GGTTTTCCCATTAGAACTTGGCTTA 59.521 40.000 0.00 0.00 0.00 3.09
3514 7247 6.769341 ACGGTTGAAAAGGTTTGTCTAGTTAT 59.231 34.615 0.00 0.00 0.00 1.89
3609 7342 5.321927 GGGGATACATCGGAATTAACCATT 58.678 41.667 0.00 0.00 39.74 3.16
3693 7426 6.723298 AAGAACTACATCATCGATTCCTCT 57.277 37.500 0.00 0.00 0.00 3.69
3703 7436 6.220726 TCATCGATTCCTCTGTCAAATACA 57.779 37.500 0.00 0.00 36.42 2.29
3827 7588 6.634805 CATACTGACTGTAGACACTCCAAAT 58.365 40.000 0.00 0.00 34.24 2.32
3839 7600 5.704515 AGACACTCCAAATTCATGACTCAAG 59.295 40.000 0.00 0.00 0.00 3.02
4073 7867 8.729805 ACTGAAAAAGCAATATTTCAAAACCA 57.270 26.923 2.99 0.00 42.96 3.67
4128 7927 1.089112 TGCACATTCTCGAAGCCATG 58.911 50.000 0.00 0.00 0.00 3.66
4133 7932 4.651994 CACATTCTCGAAGCCATGTAAAC 58.348 43.478 0.00 0.00 0.00 2.01
4181 7980 3.943671 TTTGAAACCTCTGAGGAACCA 57.056 42.857 29.71 18.73 37.67 3.67
4318 8128 7.867921 ACTTGTATACCATGTAAGGGATTTCA 58.132 34.615 0.00 0.00 43.46 2.69
4332 8144 3.369471 GGGATTTCAACTCTCATCCGTGA 60.369 47.826 0.00 0.00 36.76 4.35
4346 8158 3.469008 TCCGTGACTGTCTTGACATTT 57.531 42.857 9.51 0.00 0.00 2.32
4357 8169 9.601217 GACTGTCTTGACATTTATAACTGGTAT 57.399 33.333 3.79 0.00 0.00 2.73
4376 8191 5.758570 GTATGTCTTACCAACGTGTCTTC 57.241 43.478 0.00 0.00 0.00 2.87
4377 8192 4.602340 ATGTCTTACCAACGTGTCTTCT 57.398 40.909 0.00 0.00 0.00 2.85
4397 8212 4.960938 TCTAGTCTGCAGTGTGAATTGTT 58.039 39.130 14.67 0.00 0.00 2.83
4400 8215 6.989759 TCTAGTCTGCAGTGTGAATTGTTTTA 59.010 34.615 14.67 0.00 0.00 1.52
4421 8236 3.970721 TGCTGGTCGCACTGAATG 58.029 55.556 0.00 0.00 45.47 2.67
4423 8238 0.250252 TGCTGGTCGCACTGAATGAA 60.250 50.000 0.00 0.00 45.47 2.57
4425 8240 0.798776 CTGGTCGCACTGAATGAACC 59.201 55.000 0.00 0.00 36.61 3.62
4427 8242 1.202758 TGGTCGCACTGAATGAACCTT 60.203 47.619 0.00 0.00 36.87 3.50
4429 8244 3.071479 GGTCGCACTGAATGAACCTTAA 58.929 45.455 0.00 0.00 34.41 1.85
4443 8258 1.497286 ACCTTAAGGCCTGTTTGGTCA 59.503 47.619 21.92 0.00 44.59 4.02
4448 8263 2.380064 AGGCCTGTTTGGTCAATGAA 57.620 45.000 3.11 0.00 44.59 2.57
4451 8266 2.365293 GGCCTGTTTGGTCAATGAAAGT 59.635 45.455 0.00 0.00 40.97 2.66
4454 8269 5.279456 GGCCTGTTTGGTCAATGAAAGTTAT 60.279 40.000 0.00 0.00 40.97 1.89
4456 8272 5.634859 CCTGTTTGGTCAATGAAAGTTATGC 59.365 40.000 0.00 0.00 0.00 3.14
4459 8275 4.782019 TGGTCAATGAAAGTTATGCCAC 57.218 40.909 0.00 0.00 0.00 5.01
4469 8285 5.954752 TGAAAGTTATGCCACCCATTCAATA 59.045 36.000 0.00 0.00 35.34 1.90
4474 8290 6.490040 AGTTATGCCACCCATTCAATATGTAC 59.510 38.462 0.00 0.00 35.34 2.90
4478 8294 4.887071 GCCACCCATTCAATATGTACAGAA 59.113 41.667 0.33 0.00 0.00 3.02
4500 8316 3.469008 AATCCTGTGTTCTTCGTGTGA 57.531 42.857 0.00 0.00 0.00 3.58
4549 8365 1.139455 GTGGGATTCCAAATGCCATGG 59.861 52.381 14.77 7.63 46.04 3.66
4566 8382 2.057137 TGGCATCTTATTCCTGTGGC 57.943 50.000 0.00 0.00 36.09 5.01
4571 8387 4.644685 GGCATCTTATTCCTGTGGCTTTTA 59.355 41.667 0.00 0.00 33.18 1.52
4574 8391 7.363431 GCATCTTATTCCTGTGGCTTTTATAC 58.637 38.462 0.00 0.00 0.00 1.47
4579 8396 8.644374 TTATTCCTGTGGCTTTTATACTTTGT 57.356 30.769 0.00 0.00 0.00 2.83
4605 8422 4.392921 TTCGAATCCTGCAAACCAAAAA 57.607 36.364 0.00 0.00 0.00 1.94
4608 8425 4.098654 TCGAATCCTGCAAACCAAAAAGAA 59.901 37.500 0.00 0.00 0.00 2.52
4609 8426 4.990426 CGAATCCTGCAAACCAAAAAGAAT 59.010 37.500 0.00 0.00 0.00 2.40
4610 8427 5.466393 CGAATCCTGCAAACCAAAAAGAATT 59.534 36.000 0.00 0.00 0.00 2.17
4611 8428 6.346838 CGAATCCTGCAAACCAAAAAGAATTC 60.347 38.462 0.00 0.00 0.00 2.17
4613 8430 5.927819 TCCTGCAAACCAAAAAGAATTCAT 58.072 33.333 8.44 0.00 0.00 2.57
4614 8431 7.060383 TCCTGCAAACCAAAAAGAATTCATA 57.940 32.000 8.44 0.00 0.00 2.15
4615 8432 6.928492 TCCTGCAAACCAAAAAGAATTCATAC 59.072 34.615 8.44 0.00 0.00 2.39
4616 8433 6.705381 CCTGCAAACCAAAAAGAATTCATACA 59.295 34.615 8.44 0.00 0.00 2.29
4617 8434 7.388500 CCTGCAAACCAAAAAGAATTCATACAT 59.612 33.333 8.44 0.00 0.00 2.29
4618 8435 9.421806 CTGCAAACCAAAAAGAATTCATACATA 57.578 29.630 8.44 0.00 0.00 2.29
4619 8436 9.421806 TGCAAACCAAAAAGAATTCATACATAG 57.578 29.630 8.44 0.00 0.00 2.23
4629 8446 9.981460 AAAGAATTCATACATAGGAAAGAAGGT 57.019 29.630 8.44 0.00 29.27 3.50
4646 8463 5.420409 AGAAGGTAAAGAATCTAAGTGCCG 58.580 41.667 0.00 0.00 0.00 5.69
4651 8468 0.466124 AGAATCTAAGTGCCGAGGCC 59.534 55.000 12.05 0.00 41.09 5.19
4668 8486 2.756760 AGGCCAATTATGTTGAGTGCAG 59.243 45.455 5.01 0.00 0.00 4.41
4682 8500 0.593128 GTGCAGTGGGCTTTACACAG 59.407 55.000 0.00 0.00 45.15 3.66
4683 8501 0.472044 TGCAGTGGGCTTTACACAGA 59.528 50.000 0.00 0.00 45.15 3.41
4684 8502 1.160137 GCAGTGGGCTTTACACAGAG 58.840 55.000 0.00 0.00 41.21 3.35
4685 8503 1.270839 GCAGTGGGCTTTACACAGAGA 60.271 52.381 0.00 0.00 41.21 3.10
4686 8504 2.616510 GCAGTGGGCTTTACACAGAGAT 60.617 50.000 0.00 0.00 41.21 2.75
4687 8505 3.679389 CAGTGGGCTTTACACAGAGATT 58.321 45.455 0.00 0.00 41.21 2.40
4688 8506 3.686726 CAGTGGGCTTTACACAGAGATTC 59.313 47.826 0.00 0.00 41.21 2.52
4690 8508 3.935828 GTGGGCTTTACACAGAGATTCTC 59.064 47.826 5.49 5.49 38.67 2.87
4691 8509 3.840666 TGGGCTTTACACAGAGATTCTCT 59.159 43.478 10.50 10.50 42.11 3.10
4692 8510 4.287067 TGGGCTTTACACAGAGATTCTCTT 59.713 41.667 13.61 2.70 38.99 2.85
4693 8511 5.483937 TGGGCTTTACACAGAGATTCTCTTA 59.516 40.000 13.61 1.73 38.99 2.10
4694 8512 5.813157 GGGCTTTACACAGAGATTCTCTTAC 59.187 44.000 13.61 0.00 38.99 2.34
4695 8513 6.398918 GGCTTTACACAGAGATTCTCTTACA 58.601 40.000 13.61 0.00 38.99 2.41
4696 8514 6.311690 GGCTTTACACAGAGATTCTCTTACAC 59.688 42.308 13.61 0.00 38.99 2.90
4697 8515 6.868864 GCTTTACACAGAGATTCTCTTACACA 59.131 38.462 13.61 0.00 38.99 3.72
4698 8516 7.547370 GCTTTACACAGAGATTCTCTTACACAT 59.453 37.037 13.61 0.20 38.99 3.21
4702 8520 8.939201 ACACAGAGATTCTCTTACACATATTG 57.061 34.615 13.61 2.54 38.99 1.90
4703 8521 7.984050 ACACAGAGATTCTCTTACACATATTGG 59.016 37.037 13.61 1.17 38.99 3.16
4704 8522 7.440556 CACAGAGATTCTCTTACACATATTGGG 59.559 40.741 13.61 0.98 38.99 4.12
4705 8523 7.126421 ACAGAGATTCTCTTACACATATTGGGT 59.874 37.037 13.61 1.58 38.99 4.51
4706 8524 7.440556 CAGAGATTCTCTTACACATATTGGGTG 59.559 40.741 13.61 0.00 38.99 4.61
4707 8525 7.345653 AGAGATTCTCTTACACATATTGGGTGA 59.654 37.037 10.50 0.00 37.60 4.02
4708 8526 7.275920 AGATTCTCTTACACATATTGGGTGAC 58.724 38.462 0.00 0.00 33.25 3.67
4709 8527 5.006153 TCTCTTACACATATTGGGTGACG 57.994 43.478 0.00 0.00 33.25 4.35
4710 8528 4.119862 CTCTTACACATATTGGGTGACGG 58.880 47.826 0.00 0.00 33.25 4.79
4711 8529 3.770388 TCTTACACATATTGGGTGACGGA 59.230 43.478 0.00 0.00 33.25 4.69
4712 8530 2.691409 ACACATATTGGGTGACGGAG 57.309 50.000 0.00 0.00 39.53 4.63
4713 8531 1.299541 CACATATTGGGTGACGGAGC 58.700 55.000 0.00 0.00 38.54 4.70
4714 8532 1.134401 CACATATTGGGTGACGGAGCT 60.134 52.381 0.00 0.00 38.54 4.09
4730 8548 2.898612 GGAGCTAGTGGGGTCCTATTAC 59.101 54.545 5.59 0.00 46.71 1.89
4732 8550 3.574826 GAGCTAGTGGGGTCCTATTACTG 59.425 52.174 0.00 0.00 0.00 2.74
4741 8559 3.036091 GGTCCTATTACTGCCAGGTGTA 58.964 50.000 0.00 0.00 0.00 2.90
4749 8567 1.915489 ACTGCCAGGTGTATCCATCAA 59.085 47.619 0.00 0.00 39.02 2.57
4763 8581 2.580322 TCCATCAAGCCCAACCTATTGA 59.420 45.455 0.00 0.00 38.15 2.57
4767 8585 4.046286 TCAAGCCCAACCTATTGACATT 57.954 40.909 0.00 0.00 38.15 2.71
4773 8591 6.435164 AGCCCAACCTATTGACATTATTCTT 58.565 36.000 0.00 0.00 38.15 2.52
4781 8629 8.253113 ACCTATTGACATTATTCTTTGGCTTTG 58.747 33.333 0.00 0.00 0.00 2.77
4786 8634 5.460646 ACATTATTCTTTGGCTTTGTGTCG 58.539 37.500 0.00 0.00 0.00 4.35
4790 8638 1.879380 TCTTTGGCTTTGTGTCGGATG 59.121 47.619 0.00 0.00 0.00 3.51
4792 8640 1.234821 TTGGCTTTGTGTCGGATGAC 58.765 50.000 0.00 0.00 45.71 3.06
4802 8650 0.108615 GTCGGATGACAGGGTGTGAG 60.109 60.000 0.00 0.00 44.82 3.51
4812 8660 1.963338 GGGTGTGAGCTGACACTGC 60.963 63.158 31.03 18.02 44.81 4.40
4819 8667 1.864711 TGAGCTGACACTGCGTTTAAC 59.135 47.619 0.00 0.00 33.59 2.01
4824 8672 3.664025 GCTGACACTGCGTTTAACATTTC 59.336 43.478 0.00 0.00 0.00 2.17
4831 8679 4.339814 ACTGCGTTTAACATTTCCTTTCCA 59.660 37.500 0.00 0.00 0.00 3.53
4832 8680 4.865776 TGCGTTTAACATTTCCTTTCCAG 58.134 39.130 0.00 0.00 0.00 3.86
4833 8681 4.339814 TGCGTTTAACATTTCCTTTCCAGT 59.660 37.500 0.00 0.00 0.00 4.00
4834 8682 5.163499 TGCGTTTAACATTTCCTTTCCAGTT 60.163 36.000 0.00 0.00 0.00 3.16
4835 8683 5.401376 GCGTTTAACATTTCCTTTCCAGTTC 59.599 40.000 0.00 0.00 0.00 3.01
4836 8684 5.918576 CGTTTAACATTTCCTTTCCAGTTCC 59.081 40.000 0.00 0.00 0.00 3.62
4837 8685 6.460399 CGTTTAACATTTCCTTTCCAGTTCCA 60.460 38.462 0.00 0.00 0.00 3.53
4872 8720 8.897872 TGATATATTTTTACTTCCTCGGTTCC 57.102 34.615 0.00 0.00 0.00 3.62
4873 8721 8.711170 TGATATATTTTTACTTCCTCGGTTCCT 58.289 33.333 0.00 0.00 0.00 3.36
4877 8725 9.916360 ATATTTTTACTTCCTCGGTTCCTAAAT 57.084 29.630 0.00 0.00 0.00 1.40
4879 8727 9.916360 ATTTTTACTTCCTCGGTTCCTAAATAT 57.084 29.630 0.00 0.00 0.00 1.28
4880 8728 9.743581 TTTTTACTTCCTCGGTTCCTAAATATT 57.256 29.630 0.00 0.00 0.00 1.28
4881 8729 9.743581 TTTTACTTCCTCGGTTCCTAAATATTT 57.256 29.630 5.89 5.89 0.00 1.40
4882 8730 8.726870 TTACTTCCTCGGTTCCTAAATATTTG 57.273 34.615 11.05 1.40 0.00 2.32
4883 8731 6.954232 ACTTCCTCGGTTCCTAAATATTTGA 58.046 36.000 11.05 0.00 0.00 2.69
4884 8732 7.399634 ACTTCCTCGGTTCCTAAATATTTGAA 58.600 34.615 11.05 4.12 0.00 2.69
4885 8733 7.553044 ACTTCCTCGGTTCCTAAATATTTGAAG 59.447 37.037 11.05 11.92 0.00 3.02
4886 8734 6.954232 TCCTCGGTTCCTAAATATTTGAAGT 58.046 36.000 11.05 0.00 0.00 3.01
4887 8735 7.399634 TCCTCGGTTCCTAAATATTTGAAGTT 58.600 34.615 11.05 0.00 0.00 2.66
4889 8737 7.553044 CCTCGGTTCCTAAATATTTGAAGTTCT 59.447 37.037 11.05 0.00 0.00 3.01
4890 8738 9.595823 CTCGGTTCCTAAATATTTGAAGTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4893 8741 9.682465 GGTTCCTAAATATTTGAAGTTCTAGGT 57.318 33.333 11.05 0.00 0.00 3.08
4904 8752 9.642343 ATTTGAAGTTCTAGGTTTTTCCTAAGT 57.358 29.630 4.17 0.00 46.81 2.24
4905 8753 8.672823 TTGAAGTTCTAGGTTTTTCCTAAGTC 57.327 34.615 4.17 0.00 46.81 3.01
4906 8754 7.798071 TGAAGTTCTAGGTTTTTCCTAAGTCA 58.202 34.615 4.17 0.00 46.81 3.41
4907 8755 8.269317 TGAAGTTCTAGGTTTTTCCTAAGTCAA 58.731 33.333 4.17 0.00 46.81 3.18
4908 8756 9.117183 GAAGTTCTAGGTTTTTCCTAAGTCAAA 57.883 33.333 0.00 0.00 46.81 2.69
4909 8757 8.678593 AGTTCTAGGTTTTTCCTAAGTCAAAG 57.321 34.615 0.00 0.00 46.81 2.77
4910 8758 8.491958 AGTTCTAGGTTTTTCCTAAGTCAAAGA 58.508 33.333 0.00 0.00 46.81 2.52
4911 8759 9.117183 GTTCTAGGTTTTTCCTAAGTCAAAGAA 57.883 33.333 0.00 0.00 46.81 2.52
4912 8760 8.904099 TCTAGGTTTTTCCTAAGTCAAAGAAG 57.096 34.615 0.00 0.00 46.81 2.85
4914 8762 7.956328 AGGTTTTTCCTAAGTCAAAGAAGTT 57.044 32.000 0.00 0.00 46.10 2.66
4915 8763 8.362464 AGGTTTTTCCTAAGTCAAAGAAGTTT 57.638 30.769 0.00 0.00 46.10 2.66
4916 8764 8.251026 AGGTTTTTCCTAAGTCAAAGAAGTTTG 58.749 33.333 0.00 0.00 46.10 2.93
4930 8778 8.849168 TCAAAGAAGTTTGATTGATTTGCTAGA 58.151 29.630 0.00 0.00 45.82 2.43
4931 8779 9.467258 CAAAGAAGTTTGATTGATTTGCTAGAA 57.533 29.630 0.00 0.00 45.22 2.10
4999 8847 9.764363 AAATATACTTCATGACAAATCTAGCGA 57.236 29.630 0.00 0.00 0.00 4.93
5000 8848 9.764363 AATATACTTCATGACAAATCTAGCGAA 57.236 29.630 0.00 0.00 0.00 4.70
5001 8849 9.764363 ATATACTTCATGACAAATCTAGCGAAA 57.236 29.630 0.00 0.00 0.00 3.46
5002 8850 6.170675 ACTTCATGACAAATCTAGCGAAAC 57.829 37.500 0.00 0.00 0.00 2.78
5003 8851 5.934625 ACTTCATGACAAATCTAGCGAAACT 59.065 36.000 0.00 0.00 0.00 2.66
5004 8852 7.097192 ACTTCATGACAAATCTAGCGAAACTA 58.903 34.615 0.00 0.00 0.00 2.24
5008 8856 8.946085 TCATGACAAATCTAGCGAAACTAATTT 58.054 29.630 0.00 0.00 0.00 1.82
5009 8857 9.003112 CATGACAAATCTAGCGAAACTAATTTG 57.997 33.333 7.39 7.39 40.51 2.32
5010 8858 8.317891 TGACAAATCTAGCGAAACTAATTTGA 57.682 30.769 13.27 0.00 39.11 2.69
5011 8859 8.946085 TGACAAATCTAGCGAAACTAATTTGAT 58.054 29.630 13.27 2.28 39.11 2.57
5012 8860 9.214953 GACAAATCTAGCGAAACTAATTTGATG 57.785 33.333 13.27 0.00 39.11 3.07
5016 8864 6.097356 TCTAGCGAAACTAATTTGATGTCGT 58.903 36.000 0.00 0.00 0.00 4.34
5017 8865 7.252708 TCTAGCGAAACTAATTTGATGTCGTA 58.747 34.615 0.00 0.00 0.00 3.43
5020 8868 6.757010 AGCGAAACTAATTTGATGTCGTAGAT 59.243 34.615 0.00 0.00 40.67 1.98
5021 8869 6.841286 GCGAAACTAATTTGATGTCGTAGATG 59.159 38.462 0.00 0.00 40.67 2.90
5023 8871 7.254117 CGAAACTAATTTGATGTCGTAGATGCT 60.254 37.037 0.00 0.00 40.67 3.79
5024 8872 6.834959 ACTAATTTGATGTCGTAGATGCTG 57.165 37.500 0.00 0.00 40.67 4.41
5026 8874 2.967599 TTGATGTCGTAGATGCTGCT 57.032 45.000 0.00 0.00 40.67 4.24
5027 8875 4.385358 TTTGATGTCGTAGATGCTGCTA 57.615 40.909 0.00 0.00 40.67 3.49
5029 8877 4.590850 TGATGTCGTAGATGCTGCTATT 57.409 40.909 0.00 0.00 40.67 1.73
5032 8880 5.817296 TGATGTCGTAGATGCTGCTATTTTT 59.183 36.000 0.00 0.00 40.67 1.94
5059 8907 8.446599 TTCTAGAGTTGGTCAAACCTAAAAAG 57.553 34.615 0.00 0.00 39.58 2.27
5060 8908 7.571025 TCTAGAGTTGGTCAAACCTAAAAAGT 58.429 34.615 0.00 0.00 39.58 2.66
5061 8909 8.050930 TCTAGAGTTGGTCAAACCTAAAAAGTT 58.949 33.333 0.00 0.00 39.58 2.66
5075 8923 8.584063 ACCTAAAAAGTTTGACTTAGGACAAA 57.416 30.769 22.86 0.00 41.99 2.83
5076 8924 9.027202 ACCTAAAAAGTTTGACTTAGGACAAAA 57.973 29.630 22.86 0.00 41.99 2.44
5077 8925 9.297586 CCTAAAAAGTTTGACTTAGGACAAAAC 57.702 33.333 15.32 0.26 41.99 2.43
5080 8928 6.451064 AAGTTTGACTTAGGACAAAACTGG 57.549 37.500 4.23 0.00 36.52 4.00
5082 8930 6.184789 AGTTTGACTTAGGACAAAACTGGAA 58.815 36.000 4.23 0.00 38.38 3.53
5083 8931 6.095021 AGTTTGACTTAGGACAAAACTGGAAC 59.905 38.462 4.23 0.00 38.38 3.62
5084 8932 5.367945 TGACTTAGGACAAAACTGGAACT 57.632 39.130 0.00 0.00 0.00 3.01
5085 8933 5.751586 TGACTTAGGACAAAACTGGAACTT 58.248 37.500 0.00 0.00 0.00 2.66
5086 8934 6.891388 TGACTTAGGACAAAACTGGAACTTA 58.109 36.000 0.00 0.00 0.00 2.24
5087 8935 7.340256 TGACTTAGGACAAAACTGGAACTTAA 58.660 34.615 0.00 0.00 0.00 1.85
5088 8936 7.830201 TGACTTAGGACAAAACTGGAACTTAAA 59.170 33.333 0.00 0.00 0.00 1.52
5089 8937 8.584063 ACTTAGGACAAAACTGGAACTTAAAA 57.416 30.769 0.00 0.00 0.00 1.52
5102 8950 9.471084 ACTGGAACTTAAAATATTTTGAAACGG 57.529 29.630 21.19 13.57 0.00 4.44
5103 8951 9.685828 CTGGAACTTAAAATATTTTGAAACGGA 57.314 29.630 21.19 0.00 0.00 4.69
5104 8952 9.685828 TGGAACTTAAAATATTTTGAAACGGAG 57.314 29.630 21.19 10.55 0.00 4.63
5106 8954 9.135843 GAACTTAAAATATTTTGAAACGGAGGG 57.864 33.333 21.19 3.87 0.00 4.30
5107 8955 8.411991 ACTTAAAATATTTTGAAACGGAGGGA 57.588 30.769 21.19 0.00 0.00 4.20
5108 8956 8.520351 ACTTAAAATATTTTGAAACGGAGGGAG 58.480 33.333 21.19 2.65 0.00 4.30
5110 8958 9.517868 TTAAAATATTTTGAAACGGAGGGAGTA 57.482 29.630 21.19 0.00 0.00 2.59
5111 8959 7.625828 AAATATTTTGAAACGGAGGGAGTAG 57.374 36.000 0.00 0.00 0.00 2.57
5113 8961 5.750352 ATTTTGAAACGGAGGGAGTAGTA 57.250 39.130 0.00 0.00 0.00 1.82
5115 8963 3.446442 TGAAACGGAGGGAGTAGTACT 57.554 47.619 1.37 1.37 0.00 2.73
5118 8966 2.713863 ACGGAGGGAGTAGTACTCTG 57.286 55.000 25.70 11.39 44.46 3.35
5119 8967 1.914798 ACGGAGGGAGTAGTACTCTGT 59.085 52.381 25.70 15.31 44.46 3.41
5120 8968 2.290464 CGGAGGGAGTAGTACTCTGTG 58.710 57.143 25.70 10.85 44.46 3.66
5121 8969 2.355920 CGGAGGGAGTAGTACTCTGTGT 60.356 54.545 25.70 10.95 44.46 3.72
5159 9342 1.009829 GCAAGAACTCGTGCCTATGG 58.990 55.000 6.38 0.00 43.82 2.74
5166 9349 1.107114 CTCGTGCCTATGGTGACTCT 58.893 55.000 0.00 0.00 0.00 3.24
5186 9370 1.203187 TGTGGCCTTCTCTGTAGGAGT 60.203 52.381 3.32 0.00 42.40 3.85
5193 9377 3.431486 CCTTCTCTGTAGGAGTGGCAATC 60.431 52.174 6.36 6.36 42.40 2.67
5214 9414 4.635223 TCCAGAGAGATTGTGTGTTTGAG 58.365 43.478 0.00 0.00 0.00 3.02
5220 9420 4.999950 AGAGATTGTGTGTTTGAGATCACC 59.000 41.667 0.00 0.00 34.14 4.02
5265 9465 3.003480 GTTGTAAACTGCAGCCTCTAGG 58.997 50.000 15.27 0.00 45.32 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.876828 TATGCACGGCCCGTACGC 62.877 66.667 9.25 10.51 38.32 4.42
19 20 2.958016 GTATGCACGGCCCGTACG 60.958 66.667 9.25 8.69 38.32 3.67
20 21 2.586914 GGTATGCACGGCCCGTAC 60.587 66.667 9.25 3.14 38.32 3.67
21 22 3.852307 GGGTATGCACGGCCCGTA 61.852 66.667 9.25 0.00 38.32 4.02
23 24 4.910585 GAGGGTATGCACGGCCCG 62.911 72.222 0.00 0.00 46.69 6.13
24 25 4.564110 GGAGGGTATGCACGGCCC 62.564 72.222 12.70 12.70 42.64 5.80
25 26 4.910585 CGGAGGGTATGCACGGCC 62.911 72.222 0.00 0.00 0.00 6.13
26 27 4.157120 ACGGAGGGTATGCACGGC 62.157 66.667 0.00 0.00 0.00 5.68
174 181 5.088141 GAATCAATCCATGCGTAACTGAG 57.912 43.478 0.00 0.00 0.00 3.35
350 357 2.159382 TCCGTTGAATCAAAGAAGCCC 58.841 47.619 10.38 0.00 0.00 5.19
351 358 3.915437 TTCCGTTGAATCAAAGAAGCC 57.085 42.857 10.38 0.00 0.00 4.35
354 361 8.243426 CCTATTGAATTCCGTTGAATCAAAGAA 58.757 33.333 10.38 10.60 40.34 2.52
355 362 7.609918 TCCTATTGAATTCCGTTGAATCAAAGA 59.390 33.333 10.38 1.92 40.34 2.52
357 364 7.695480 TCCTATTGAATTCCGTTGAATCAAA 57.305 32.000 2.27 0.00 40.34 2.69
358 365 7.880160 ATCCTATTGAATTCCGTTGAATCAA 57.120 32.000 2.27 0.00 40.34 2.57
359 366 7.880160 AATCCTATTGAATTCCGTTGAATCA 57.120 32.000 2.27 0.00 40.34 2.57
360 367 8.624776 AGAAATCCTATTGAATTCCGTTGAATC 58.375 33.333 2.27 0.00 40.34 2.52
361 368 8.525290 AGAAATCCTATTGAATTCCGTTGAAT 57.475 30.769 2.27 0.00 43.08 2.57
362 369 7.938140 AGAAATCCTATTGAATTCCGTTGAA 57.062 32.000 2.27 0.00 34.02 2.69
363 370 9.456147 TTTAGAAATCCTATTGAATTCCGTTGA 57.544 29.630 2.27 0.00 34.02 3.18
364 371 9.722056 CTTTAGAAATCCTATTGAATTCCGTTG 57.278 33.333 2.27 0.00 34.02 4.10
365 372 9.681062 TCTTTAGAAATCCTATTGAATTCCGTT 57.319 29.630 2.27 0.00 34.02 4.44
366 373 9.331282 CTCTTTAGAAATCCTATTGAATTCCGT 57.669 33.333 2.27 0.00 34.02 4.69
367 374 9.331282 ACTCTTTAGAAATCCTATTGAATTCCG 57.669 33.333 2.27 0.00 34.02 4.30
501 1948 2.874780 GACGACGCAGCAGGTACG 60.875 66.667 0.00 0.00 0.00 3.67
502 1949 1.801913 CAGACGACGCAGCAGGTAC 60.802 63.158 0.00 0.00 0.00 3.34
503 1950 2.566529 CAGACGACGCAGCAGGTA 59.433 61.111 0.00 0.00 0.00 3.08
506 1953 4.731612 AGCCAGACGACGCAGCAG 62.732 66.667 0.00 0.00 0.00 4.24
606 2074 2.181021 GTCTCCGTCGTTCGCCAT 59.819 61.111 0.00 0.00 38.35 4.40
664 2150 0.179000 GCCCCATGTGGACTAGAGTG 59.821 60.000 0.00 0.00 37.39 3.51
676 2162 2.484062 GCACGATTCCTGCCCCATG 61.484 63.158 0.00 0.00 0.00 3.66
713 2200 1.580845 CCCGCAGCCTCTCAAACTTG 61.581 60.000 0.00 0.00 0.00 3.16
784 2272 2.029892 ATCCCCTCTGATCCGCTCCT 62.030 60.000 0.00 0.00 0.00 3.69
967 2458 2.193536 GTGCGGGCAACAACTTCCT 61.194 57.895 0.00 0.00 39.74 3.36
982 2473 3.902162 TAACCTCGTGCCGTCGTGC 62.902 63.158 0.00 0.00 0.00 5.34
983 2474 1.153901 ATAACCTCGTGCCGTCGTG 60.154 57.895 0.00 0.00 0.00 4.35
984 2475 1.153901 CATAACCTCGTGCCGTCGT 60.154 57.895 0.00 0.00 0.00 4.34
985 2476 2.514013 GCATAACCTCGTGCCGTCG 61.514 63.158 0.00 0.00 35.35 5.12
986 2477 1.153628 AGCATAACCTCGTGCCGTC 60.154 57.895 0.00 0.00 42.20 4.79
987 2478 1.447838 CAGCATAACCTCGTGCCGT 60.448 57.895 0.00 0.00 42.20 5.68
988 2479 2.813179 GCAGCATAACCTCGTGCCG 61.813 63.158 0.00 0.00 42.20 5.69
989 2480 2.472909 GGCAGCATAACCTCGTGCC 61.473 63.158 0.00 0.00 46.49 5.01
1028 2519 0.179100 CGTATCAGCTGGTGGACTGG 60.179 60.000 15.13 0.00 34.57 4.00
1041 2539 2.207229 CCGGGGATCTGCCGTATCA 61.207 63.158 0.00 0.00 37.63 2.15
1266 2764 3.378399 GAAGCCGTGGAGGAGGAGC 62.378 68.421 0.00 0.00 45.00 4.70
1754 3252 4.850680 ACTTTAGTTGTTGGGTCACTGAA 58.149 39.130 0.00 0.00 0.00 3.02
1764 3262 7.407337 ACGAAAAGAAGCTACTTTAGTTGTTG 58.593 34.615 0.00 0.00 38.86 3.33
1765 3263 7.549615 ACGAAAAGAAGCTACTTTAGTTGTT 57.450 32.000 0.00 0.00 38.86 2.83
1775 3273 3.545633 CAGCACAACGAAAAGAAGCTAC 58.454 45.455 0.00 0.00 0.00 3.58
1783 3281 2.575694 ACAATGCAGCACAACGAAAA 57.424 40.000 0.00 0.00 0.00 2.29
1930 3439 4.096231 CACCTGTCATTCAACAACTCAACA 59.904 41.667 0.00 0.00 0.00 3.33
1936 3445 4.999950 AGAGATCACCTGTCATTCAACAAC 59.000 41.667 0.00 0.00 0.00 3.32
2128 3650 0.811616 CTGCTTCCTGTATCCGTGCC 60.812 60.000 0.00 0.00 0.00 5.01
2250 3774 9.455847 GTGATGGAGTATTTATTTTCATGAAGC 57.544 33.333 8.41 0.00 0.00 3.86
2380 3904 8.693120 TCACCACCAGTATATTTACAAAAACA 57.307 30.769 0.00 0.00 0.00 2.83
2588 6272 4.437682 ACTGATGAGGTTCTGTTCCAAA 57.562 40.909 0.00 0.00 0.00 3.28
2596 6280 8.708378 TGTGATAATGATAACTGATGAGGTTCT 58.292 33.333 0.00 0.00 0.00 3.01
3114 6845 4.442073 GCACTCACAAAAATGTGTAAGCAG 59.558 41.667 8.64 1.85 40.45 4.24
3117 6848 7.524294 AAAAGCACTCACAAAAATGTGTAAG 57.476 32.000 8.64 3.12 40.45 2.34
3149 6882 5.665459 AGGTACTAGCACAGCAGAATTAAG 58.335 41.667 0.00 0.00 36.02 1.85
3318 7051 7.541162 CATCATGTTGTGTACTTCCATTGAAT 58.459 34.615 0.00 0.00 0.00 2.57
3338 7071 2.408271 AACATGACGACAGGCATCAT 57.592 45.000 0.00 0.00 44.33 2.45
3489 7222 4.520179 ACTAGACAAACCTTTTCAACCGT 58.480 39.130 0.00 0.00 0.00 4.83
3514 7247 9.763465 GCTTGCATACGATAAAAGTTTAAGTTA 57.237 29.630 0.00 0.00 0.00 2.24
3569 7302 7.361438 TGTATCCCCCAAATGTCTGAATTTAT 58.639 34.615 0.00 0.00 0.00 1.40
3609 7342 0.681887 CATGGCCAGCATCCTTGACA 60.682 55.000 13.05 0.00 32.32 3.58
3693 7426 3.118445 TGCGATCATCCCTGTATTTGACA 60.118 43.478 0.00 0.00 36.35 3.58
3703 7436 0.759346 GGTACCTTGCGATCATCCCT 59.241 55.000 4.06 0.00 0.00 4.20
3891 7652 0.388659 TGTGCTTGCAACATGTTCCC 59.611 50.000 8.48 3.43 0.00 3.97
4073 7867 6.126565 GGGTGGGTGGTTTCTACTAGATATTT 60.127 42.308 0.00 0.00 0.00 1.40
4128 7927 5.891451 ACAGCAGAGAAAACCTTTGTTTAC 58.109 37.500 0.00 0.00 43.80 2.01
4133 7932 5.506317 CCAGTAACAGCAGAGAAAACCTTTG 60.506 44.000 0.00 0.00 0.00 2.77
4181 7980 6.435164 ACATCCCTGCTAACCAATAGAAAAT 58.565 36.000 0.00 0.00 33.04 1.82
4311 8121 3.619038 GTCACGGATGAGAGTTGAAATCC 59.381 47.826 0.00 0.00 34.75 3.01
4312 8122 4.328440 CAGTCACGGATGAGAGTTGAAATC 59.672 45.833 0.00 0.00 34.75 2.17
4318 8128 2.520069 AGACAGTCACGGATGAGAGTT 58.480 47.619 2.66 0.00 34.75 3.01
4332 8144 9.383519 CATACCAGTTATAAATGTCAAGACAGT 57.616 33.333 11.63 3.05 45.48 3.55
4357 8169 4.581824 ACTAGAAGACACGTTGGTAAGACA 59.418 41.667 0.00 0.00 0.00 3.41
4367 8179 2.030717 CACTGCAGACTAGAAGACACGT 60.031 50.000 23.35 0.00 0.00 4.49
4376 8191 5.679734 AAACAATTCACACTGCAGACTAG 57.320 39.130 23.35 9.59 0.00 2.57
4377 8192 6.989759 TCTAAAACAATTCACACTGCAGACTA 59.010 34.615 23.35 0.00 0.00 2.59
4419 8234 3.165071 CCAAACAGGCCTTAAGGTTCAT 58.835 45.455 22.55 1.79 37.57 2.57
4420 8235 2.091555 ACCAAACAGGCCTTAAGGTTCA 60.092 45.455 22.55 0.00 43.14 3.18
4421 8236 2.557056 GACCAAACAGGCCTTAAGGTTC 59.443 50.000 22.55 14.78 43.14 3.62
4423 8238 1.497286 TGACCAAACAGGCCTTAAGGT 59.503 47.619 22.55 9.36 43.14 3.50
4425 8240 3.826157 TCATTGACCAAACAGGCCTTAAG 59.174 43.478 0.00 0.00 43.14 1.85
4427 8242 3.517296 TCATTGACCAAACAGGCCTTA 57.483 42.857 0.00 0.00 43.14 2.69
4429 8244 2.380064 TTCATTGACCAAACAGGCCT 57.620 45.000 0.00 0.00 43.14 5.19
4443 8258 4.776837 TGAATGGGTGGCATAACTTTCATT 59.223 37.500 10.84 0.00 0.00 2.57
4448 8263 5.898972 ACATATTGAATGGGTGGCATAACTT 59.101 36.000 0.00 0.00 0.00 2.66
4451 8266 6.368805 TGTACATATTGAATGGGTGGCATAA 58.631 36.000 0.00 0.00 0.00 1.90
4454 8269 4.080072 TCTGTACATATTGAATGGGTGGCA 60.080 41.667 0.00 0.00 0.00 4.92
4456 8272 7.403312 TTTTCTGTACATATTGAATGGGTGG 57.597 36.000 0.00 0.00 0.00 4.61
4459 8275 8.917088 AGGATTTTTCTGTACATATTGAATGGG 58.083 33.333 0.00 0.00 0.00 4.00
4469 8285 7.307989 CGAAGAACACAGGATTTTTCTGTACAT 60.308 37.037 0.00 0.00 42.87 2.29
4474 8290 5.207768 CACGAAGAACACAGGATTTTTCTG 58.792 41.667 0.00 0.00 38.16 3.02
4478 8294 4.196193 TCACACGAAGAACACAGGATTTT 58.804 39.130 0.00 0.00 0.00 1.82
4500 8316 6.892658 TCAGTAATAGTTGTTTGGTTGCAT 57.107 33.333 0.00 0.00 0.00 3.96
4549 8365 4.725790 AAAAGCCACAGGAATAAGATGC 57.274 40.909 0.00 0.00 0.00 3.91
4554 8370 8.519526 CACAAAGTATAAAAGCCACAGGAATAA 58.480 33.333 0.00 0.00 0.00 1.40
4571 8387 6.149633 GCAGGATTCGAAAAACACAAAGTAT 58.850 36.000 0.00 0.00 0.00 2.12
4574 8391 4.358851 TGCAGGATTCGAAAAACACAAAG 58.641 39.130 0.00 0.00 0.00 2.77
4579 8396 3.131223 TGGTTTGCAGGATTCGAAAAACA 59.869 39.130 17.81 6.66 30.89 2.83
4618 8435 7.608376 GCACTTAGATTCTTTACCTTCTTTCCT 59.392 37.037 0.00 0.00 0.00 3.36
4619 8436 7.148222 GGCACTTAGATTCTTTACCTTCTTTCC 60.148 40.741 0.00 0.00 0.00 3.13
4622 8439 5.875359 CGGCACTTAGATTCTTTACCTTCTT 59.125 40.000 0.00 0.00 0.00 2.52
4624 8441 5.416947 TCGGCACTTAGATTCTTTACCTTC 58.583 41.667 0.00 0.00 0.00 3.46
4627 8444 4.120589 CCTCGGCACTTAGATTCTTTACC 58.879 47.826 0.00 0.00 0.00 2.85
4628 8445 3.556365 GCCTCGGCACTTAGATTCTTTAC 59.444 47.826 2.41 0.00 41.49 2.01
4629 8446 3.431766 GGCCTCGGCACTTAGATTCTTTA 60.432 47.826 10.51 0.00 44.11 1.85
4638 8455 2.092646 ACATAATTGGCCTCGGCACTTA 60.093 45.455 10.51 4.38 44.11 2.24
4643 8460 1.334869 CTCAACATAATTGGCCTCGGC 59.665 52.381 3.32 0.00 41.06 5.54
4646 8463 2.754552 TGCACTCAACATAATTGGCCTC 59.245 45.455 3.32 0.00 0.00 4.70
4651 8468 3.674138 GCCCACTGCACTCAACATAATTG 60.674 47.826 0.00 0.00 40.77 2.32
4668 8486 3.935828 GAGAATCTCTGTGTAAAGCCCAC 59.064 47.826 2.45 0.00 0.00 4.61
4682 8500 7.439655 GTCACCCAATATGTGTAAGAGAATCTC 59.560 40.741 1.19 1.19 38.70 2.75
4683 8501 7.275920 GTCACCCAATATGTGTAAGAGAATCT 58.724 38.462 0.00 0.00 40.31 2.40
4684 8502 6.201044 CGTCACCCAATATGTGTAAGAGAATC 59.799 42.308 0.00 0.00 35.25 2.52
4685 8503 6.049149 CGTCACCCAATATGTGTAAGAGAAT 58.951 40.000 0.00 0.00 35.25 2.40
4686 8504 5.416083 CGTCACCCAATATGTGTAAGAGAA 58.584 41.667 0.00 0.00 35.25 2.87
4687 8505 4.142026 CCGTCACCCAATATGTGTAAGAGA 60.142 45.833 0.00 0.00 35.25 3.10
4688 8506 4.119862 CCGTCACCCAATATGTGTAAGAG 58.880 47.826 0.00 0.00 35.25 2.85
4690 8508 4.119862 CTCCGTCACCCAATATGTGTAAG 58.880 47.826 0.00 0.00 35.25 2.34
4691 8509 3.680475 GCTCCGTCACCCAATATGTGTAA 60.680 47.826 0.00 0.00 35.25 2.41
4692 8510 2.159014 GCTCCGTCACCCAATATGTGTA 60.159 50.000 0.00 0.00 35.25 2.90
4693 8511 1.406887 GCTCCGTCACCCAATATGTGT 60.407 52.381 0.00 0.00 35.25 3.72
4694 8512 1.134401 AGCTCCGTCACCCAATATGTG 60.134 52.381 0.00 0.00 35.01 3.21
4695 8513 1.204146 AGCTCCGTCACCCAATATGT 58.796 50.000 0.00 0.00 0.00 2.29
4696 8514 2.365617 ACTAGCTCCGTCACCCAATATG 59.634 50.000 0.00 0.00 0.00 1.78
4697 8515 2.365617 CACTAGCTCCGTCACCCAATAT 59.634 50.000 0.00 0.00 0.00 1.28
4698 8516 1.754803 CACTAGCTCCGTCACCCAATA 59.245 52.381 0.00 0.00 0.00 1.90
4699 8517 0.537188 CACTAGCTCCGTCACCCAAT 59.463 55.000 0.00 0.00 0.00 3.16
4700 8518 1.541310 CCACTAGCTCCGTCACCCAA 61.541 60.000 0.00 0.00 0.00 4.12
4701 8519 1.982395 CCACTAGCTCCGTCACCCA 60.982 63.158 0.00 0.00 0.00 4.51
4702 8520 2.722201 CCCACTAGCTCCGTCACCC 61.722 68.421 0.00 0.00 0.00 4.61
4703 8521 2.722201 CCCCACTAGCTCCGTCACC 61.722 68.421 0.00 0.00 0.00 4.02
4704 8522 1.946475 GACCCCACTAGCTCCGTCAC 61.946 65.000 0.00 0.00 0.00 3.67
4705 8523 1.681327 GACCCCACTAGCTCCGTCA 60.681 63.158 0.00 0.00 0.00 4.35
4706 8524 2.424733 GGACCCCACTAGCTCCGTC 61.425 68.421 0.00 0.00 0.00 4.79
4707 8525 1.578215 TAGGACCCCACTAGCTCCGT 61.578 60.000 0.00 0.00 0.00 4.69
4708 8526 0.178958 ATAGGACCCCACTAGCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
4709 8527 2.104669 AATAGGACCCCACTAGCTCC 57.895 55.000 0.00 0.00 0.00 4.70
4710 8528 3.574826 CAGTAATAGGACCCCACTAGCTC 59.425 52.174 0.00 0.00 0.00 4.09
4711 8529 3.577919 CAGTAATAGGACCCCACTAGCT 58.422 50.000 0.00 0.00 0.00 3.32
4712 8530 2.037381 GCAGTAATAGGACCCCACTAGC 59.963 54.545 0.00 0.00 0.00 3.42
4713 8531 2.633481 GGCAGTAATAGGACCCCACTAG 59.367 54.545 0.00 0.00 0.00 2.57
4714 8532 2.022820 TGGCAGTAATAGGACCCCACTA 60.023 50.000 0.00 0.00 0.00 2.74
4741 8559 3.205056 TCAATAGGTTGGGCTTGATGGAT 59.795 43.478 0.00 0.00 35.99 3.41
4749 8567 6.018433 AGAATAATGTCAATAGGTTGGGCT 57.982 37.500 0.00 0.00 35.99 5.19
4763 8581 5.460646 CGACACAAAGCCAAAGAATAATGT 58.539 37.500 0.00 0.00 0.00 2.71
4767 8585 3.745799 TCCGACACAAAGCCAAAGAATA 58.254 40.909 0.00 0.00 0.00 1.75
4773 8591 1.234821 GTCATCCGACACAAAGCCAA 58.765 50.000 0.00 0.00 42.13 4.52
4786 8634 0.392193 CAGCTCACACCCTGTCATCC 60.392 60.000 0.00 0.00 0.00 3.51
4790 8638 0.601311 GTGTCAGCTCACACCCTGTC 60.601 60.000 10.16 0.00 40.84 3.51
4792 8640 0.602106 CAGTGTCAGCTCACACCCTG 60.602 60.000 18.04 6.49 46.85 4.45
4795 8643 2.313172 CGCAGTGTCAGCTCACACC 61.313 63.158 18.04 1.93 46.85 4.16
4797 8645 0.461870 AAACGCAGTGTCAGCTCACA 60.462 50.000 8.15 0.00 45.00 3.58
4802 8650 2.969443 ATGTTAAACGCAGTGTCAGC 57.031 45.000 0.00 0.00 45.00 4.26
4812 8660 5.918576 GGAACTGGAAAGGAAATGTTAAACG 59.081 40.000 0.00 0.00 0.00 3.60
4819 8667 4.655963 TCTCTGGAACTGGAAAGGAAATG 58.344 43.478 0.00 0.00 0.00 2.32
4824 8672 2.260822 TCCTCTCTGGAACTGGAAAGG 58.739 52.381 0.00 0.00 42.94 3.11
4857 8705 8.542080 TCAAATATTTAGGAACCGAGGAAGTAA 58.458 33.333 0.00 0.00 0.00 2.24
4858 8706 8.081517 TCAAATATTTAGGAACCGAGGAAGTA 57.918 34.615 0.00 0.00 0.00 2.24
4859 8707 6.954232 TCAAATATTTAGGAACCGAGGAAGT 58.046 36.000 0.00 0.00 0.00 3.01
4860 8708 7.553044 ACTTCAAATATTTAGGAACCGAGGAAG 59.447 37.037 0.00 7.92 33.61 3.46
4862 8710 6.954232 ACTTCAAATATTTAGGAACCGAGGA 58.046 36.000 0.00 0.00 0.00 3.71
4863 8711 7.553044 AGAACTTCAAATATTTAGGAACCGAGG 59.447 37.037 0.00 0.00 0.00 4.63
4864 8712 8.494016 AGAACTTCAAATATTTAGGAACCGAG 57.506 34.615 0.00 0.00 0.00 4.63
4865 8713 9.595823 CTAGAACTTCAAATATTTAGGAACCGA 57.404 33.333 0.00 0.00 0.00 4.69
4866 8714 8.827677 CCTAGAACTTCAAATATTTAGGAACCG 58.172 37.037 0.00 0.00 30.38 4.44
4867 8715 9.682465 ACCTAGAACTTCAAATATTTAGGAACC 57.318 33.333 13.75 0.00 32.65 3.62
4890 8738 8.251026 CAAACTTCTTTGACTTAGGAAAAACCT 58.749 33.333 0.00 0.00 44.31 3.50
4894 8742 9.801873 CAATCAAACTTCTTTGACTTAGGAAAA 57.198 29.630 0.00 0.00 46.79 2.29
4895 8743 9.184523 TCAATCAAACTTCTTTGACTTAGGAAA 57.815 29.630 0.00 0.00 46.79 3.13
4896 8744 8.746052 TCAATCAAACTTCTTTGACTTAGGAA 57.254 30.769 0.00 0.00 46.79 3.36
4897 8745 8.924511 ATCAATCAAACTTCTTTGACTTAGGA 57.075 30.769 0.00 0.00 46.79 2.94
4898 8746 9.971922 AAATCAATCAAACTTCTTTGACTTAGG 57.028 29.630 0.00 0.00 46.79 2.69
4900 8748 9.248291 GCAAATCAATCAAACTTCTTTGACTTA 57.752 29.630 0.00 0.00 46.79 2.24
4901 8749 7.983484 AGCAAATCAATCAAACTTCTTTGACTT 59.017 29.630 0.00 0.00 46.79 3.01
4902 8750 7.495055 AGCAAATCAATCAAACTTCTTTGACT 58.505 30.769 0.00 0.00 46.79 3.41
4903 8751 7.704789 AGCAAATCAATCAAACTTCTTTGAC 57.295 32.000 0.00 0.00 46.79 3.18
4905 8753 9.467258 TTCTAGCAAATCAATCAAACTTCTTTG 57.533 29.630 0.00 0.00 38.56 2.77
4973 8821 9.764363 TCGCTAGATTTGTCATGAAGTATATTT 57.236 29.630 0.00 0.00 0.00 1.40
4974 8822 9.764363 TTCGCTAGATTTGTCATGAAGTATATT 57.236 29.630 0.00 0.00 0.00 1.28
4975 8823 9.764363 TTTCGCTAGATTTGTCATGAAGTATAT 57.236 29.630 0.00 0.00 0.00 0.86
4976 8824 9.031360 GTTTCGCTAGATTTGTCATGAAGTATA 57.969 33.333 0.00 0.00 0.00 1.47
4977 8825 7.766278 AGTTTCGCTAGATTTGTCATGAAGTAT 59.234 33.333 0.00 0.00 0.00 2.12
4979 8827 5.934625 AGTTTCGCTAGATTTGTCATGAAGT 59.065 36.000 0.00 0.00 0.00 3.01
4981 8829 7.899178 TTAGTTTCGCTAGATTTGTCATGAA 57.101 32.000 0.00 0.00 0.00 2.57
4982 8830 8.492673 AATTAGTTTCGCTAGATTTGTCATGA 57.507 30.769 0.00 0.00 0.00 3.07
4984 8832 8.946085 TCAAATTAGTTTCGCTAGATTTGTCAT 58.054 29.630 0.00 0.00 38.13 3.06
4986 8834 9.214953 CATCAAATTAGTTTCGCTAGATTTGTC 57.785 33.333 0.00 0.00 38.13 3.18
4987 8835 8.730680 ACATCAAATTAGTTTCGCTAGATTTGT 58.269 29.630 0.00 0.00 38.13 2.83
4989 8837 8.116753 CGACATCAAATTAGTTTCGCTAGATTT 58.883 33.333 0.00 0.00 0.00 2.17
4990 8838 7.277981 ACGACATCAAATTAGTTTCGCTAGATT 59.722 33.333 0.00 0.00 0.00 2.40
4991 8839 6.757010 ACGACATCAAATTAGTTTCGCTAGAT 59.243 34.615 0.00 0.00 0.00 1.98
4992 8840 6.097356 ACGACATCAAATTAGTTTCGCTAGA 58.903 36.000 0.00 0.00 0.00 2.43
4993 8841 6.332504 ACGACATCAAATTAGTTTCGCTAG 57.667 37.500 0.00 0.00 0.00 3.42
4994 8842 7.252708 TCTACGACATCAAATTAGTTTCGCTA 58.747 34.615 0.00 0.00 0.00 4.26
4995 8843 6.097356 TCTACGACATCAAATTAGTTTCGCT 58.903 36.000 0.00 0.00 0.00 4.93
4997 8845 6.841286 GCATCTACGACATCAAATTAGTTTCG 59.159 38.462 0.00 0.00 0.00 3.46
4998 8846 7.848051 CAGCATCTACGACATCAAATTAGTTTC 59.152 37.037 0.00 0.00 0.00 2.78
4999 8847 7.677276 GCAGCATCTACGACATCAAATTAGTTT 60.677 37.037 0.00 0.00 0.00 2.66
5000 8848 6.238211 GCAGCATCTACGACATCAAATTAGTT 60.238 38.462 0.00 0.00 0.00 2.24
5001 8849 5.235186 GCAGCATCTACGACATCAAATTAGT 59.765 40.000 0.00 0.00 0.00 2.24
5002 8850 5.464722 AGCAGCATCTACGACATCAAATTAG 59.535 40.000 0.00 0.00 0.00 1.73
5003 8851 5.359756 AGCAGCATCTACGACATCAAATTA 58.640 37.500 0.00 0.00 0.00 1.40
5004 8852 4.194640 AGCAGCATCTACGACATCAAATT 58.805 39.130 0.00 0.00 0.00 1.82
5008 8856 4.590850 AATAGCAGCATCTACGACATCA 57.409 40.909 0.00 0.00 0.00 3.07
5009 8857 5.914085 AAAATAGCAGCATCTACGACATC 57.086 39.130 0.00 0.00 0.00 3.06
5032 8880 8.810990 TTTTAGGTTTGACCAACTCTAGAAAA 57.189 30.769 0.00 0.00 41.95 2.29
5033 8881 8.810990 TTTTTAGGTTTGACCAACTCTAGAAA 57.189 30.769 0.00 0.00 41.95 2.52
5038 8886 7.476540 AAACTTTTTAGGTTTGACCAACTCT 57.523 32.000 0.00 0.00 41.95 3.24
5048 8896 8.584063 TGTCCTAAGTCAAACTTTTTAGGTTT 57.416 30.769 8.51 0.00 41.74 3.27
5050 8898 8.584063 TTTGTCCTAAGTCAAACTTTTTAGGT 57.416 30.769 8.51 0.00 41.74 3.08
5051 8899 9.297586 GTTTTGTCCTAAGTCAAACTTTTTAGG 57.702 33.333 0.00 3.34 42.18 2.69
5053 8901 9.849166 CAGTTTTGTCCTAAGTCAAACTTTTTA 57.151 29.630 0.00 0.00 39.51 1.52
5054 8902 7.817478 CCAGTTTTGTCCTAAGTCAAACTTTTT 59.183 33.333 0.00 0.00 39.51 1.94
5055 8903 7.177744 TCCAGTTTTGTCCTAAGTCAAACTTTT 59.822 33.333 0.00 0.00 39.51 2.27
5059 8907 6.095021 AGTTCCAGTTTTGTCCTAAGTCAAAC 59.905 38.462 0.00 0.00 31.99 2.93
5060 8908 6.184789 AGTTCCAGTTTTGTCCTAAGTCAAA 58.815 36.000 0.00 0.00 30.64 2.69
5061 8909 5.751586 AGTTCCAGTTTTGTCCTAAGTCAA 58.248 37.500 0.00 0.00 0.00 3.18
5063 8911 7.797038 TTAAGTTCCAGTTTTGTCCTAAGTC 57.203 36.000 0.00 0.00 0.00 3.01
5076 8924 9.471084 CCGTTTCAAAATATTTTAAGTTCCAGT 57.529 29.630 12.98 0.00 0.00 4.00
5077 8925 9.685828 TCCGTTTCAAAATATTTTAAGTTCCAG 57.314 29.630 12.98 0.00 0.00 3.86
5078 8926 9.685828 CTCCGTTTCAAAATATTTTAAGTTCCA 57.314 29.630 12.98 0.00 0.00 3.53
5080 8928 9.135843 CCCTCCGTTTCAAAATATTTTAAGTTC 57.864 33.333 12.98 3.50 0.00 3.01
5082 8930 8.411991 TCCCTCCGTTTCAAAATATTTTAAGT 57.588 30.769 12.98 0.00 0.00 2.24
5083 8931 8.520351 ACTCCCTCCGTTTCAAAATATTTTAAG 58.480 33.333 12.98 2.84 0.00 1.85
5084 8932 8.411991 ACTCCCTCCGTTTCAAAATATTTTAA 57.588 30.769 12.98 2.86 0.00 1.52
5085 8933 9.169592 CTACTCCCTCCGTTTCAAAATATTTTA 57.830 33.333 12.98 0.00 0.00 1.52
5086 8934 6.911250 ACTCCCTCCGTTTCAAAATATTTT 57.089 33.333 7.64 7.64 0.00 1.82
5087 8935 7.173032 ACTACTCCCTCCGTTTCAAAATATTT 58.827 34.615 0.00 0.00 0.00 1.40
5088 8936 6.718294 ACTACTCCCTCCGTTTCAAAATATT 58.282 36.000 0.00 0.00 0.00 1.28
5089 8937 6.309389 ACTACTCCCTCCGTTTCAAAATAT 57.691 37.500 0.00 0.00 0.00 1.28
5091 8939 4.635699 ACTACTCCCTCCGTTTCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
5093 8941 4.154942 AGTACTACTCCCTCCGTTTCAAA 58.845 43.478 0.00 0.00 0.00 2.69
5094 8942 3.760684 GAGTACTACTCCCTCCGTTTCAA 59.239 47.826 5.01 0.00 39.28 2.69
5096 8944 3.377798 CAGAGTACTACTCCCTCCGTTTC 59.622 52.174 11.94 0.00 46.18 2.78
5097 8945 3.245193 ACAGAGTACTACTCCCTCCGTTT 60.245 47.826 11.94 0.00 46.18 3.60
5098 8946 2.308275 ACAGAGTACTACTCCCTCCGTT 59.692 50.000 11.94 0.00 46.18 4.44
5099 8947 1.914798 ACAGAGTACTACTCCCTCCGT 59.085 52.381 11.94 1.16 46.18 4.69
5100 8948 2.290464 CACAGAGTACTACTCCCTCCG 58.710 57.143 11.94 0.63 46.18 4.63
5101 8949 3.054213 AGACACAGAGTACTACTCCCTCC 60.054 52.174 11.94 0.41 46.18 4.30
5102 8950 4.080751 AGAGACACAGAGTACTACTCCCTC 60.081 50.000 11.94 10.57 46.18 4.30
5103 8951 3.847780 AGAGACACAGAGTACTACTCCCT 59.152 47.826 11.94 3.40 46.18 4.20
5104 8952 3.942748 CAGAGACACAGAGTACTACTCCC 59.057 52.174 11.94 0.00 46.18 4.30
5106 8954 5.701750 TCAACAGAGACACAGAGTACTACTC 59.298 44.000 8.02 8.02 45.38 2.59
5107 8955 5.470777 GTCAACAGAGACACAGAGTACTACT 59.529 44.000 0.00 0.00 38.40 2.57
5108 8956 5.335035 GGTCAACAGAGACACAGAGTACTAC 60.335 48.000 0.00 0.00 40.29 2.73
5110 8958 3.570550 GGTCAACAGAGACACAGAGTACT 59.429 47.826 0.00 0.00 40.29 2.73
5111 8959 3.305471 GGGTCAACAGAGACACAGAGTAC 60.305 52.174 0.00 0.00 41.58 2.73
5113 8961 1.689273 GGGTCAACAGAGACACAGAGT 59.311 52.381 0.00 0.00 41.58 3.24
5115 8963 1.788229 TGGGTCAACAGAGACACAGA 58.212 50.000 0.00 0.00 46.37 3.41
5118 8966 2.158957 TGAGTTGGGTCAACAGAGACAC 60.159 50.000 12.46 0.00 45.66 3.67
5119 8967 2.103094 CTGAGTTGGGTCAACAGAGACA 59.897 50.000 12.46 4.78 45.66 3.41
5120 8968 2.760374 CTGAGTTGGGTCAACAGAGAC 58.240 52.381 12.46 0.00 45.66 3.36
5121 8969 1.070758 GCTGAGTTGGGTCAACAGAGA 59.929 52.381 12.46 0.00 45.66 3.10
5159 9342 0.972883 AGAGAAGGCCACAGAGTCAC 59.027 55.000 5.01 0.00 0.00 3.67
5166 9349 1.203187 ACTCCTACAGAGAAGGCCACA 60.203 52.381 5.01 0.00 46.50 4.17
5193 9377 4.635223 TCTCAAACACACAATCTCTCTGG 58.365 43.478 0.00 0.00 0.00 3.86
5238 9438 2.035832 GGCTGCAGTTTACAACACCATT 59.964 45.455 16.64 0.00 0.00 3.16
5239 9439 1.613437 GGCTGCAGTTTACAACACCAT 59.387 47.619 16.64 0.00 0.00 3.55
5240 9440 1.028905 GGCTGCAGTTTACAACACCA 58.971 50.000 16.64 0.00 0.00 4.17
5241 9441 1.266989 GAGGCTGCAGTTTACAACACC 59.733 52.381 16.64 4.27 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.