Multiple sequence alignment - TraesCS5D01G424900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G424900 chr5D 100.000 2960 0 0 1 2960 483799826 483796867 0.000000e+00 5467
1 TraesCS5D01G424900 chr5D 98.209 2457 33 8 1 2452 6211915 6209465 0.000000e+00 4283
2 TraesCS5D01G424900 chr1A 98.431 2485 26 7 1 2474 554469298 554466816 0.000000e+00 4361
3 TraesCS5D01G424900 chr1A 95.878 1480 53 5 925 2399 154076653 154078129 0.000000e+00 2388
4 TraesCS5D01G424900 chr3B 98.230 2486 26 12 1 2474 201502305 201504784 0.000000e+00 4331
5 TraesCS5D01G424900 chr3B 94.270 2321 97 17 172 2474 460162491 460160189 0.000000e+00 3517
6 TraesCS5D01G424900 chr3B 98.908 1648 15 3 1 1645 10274477 10276124 0.000000e+00 2940
7 TraesCS5D01G424900 chr1D 97.340 2481 32 10 1 2474 254485456 254487909 0.000000e+00 4185
8 TraesCS5D01G424900 chr1D 95.240 2479 78 19 1 2474 244404392 244406835 0.000000e+00 3888
9 TraesCS5D01G424900 chr1D 95.194 2476 83 15 1 2471 244419924 244422368 0.000000e+00 3880
10 TraesCS5D01G424900 chr1B 98.177 2030 29 6 1 2025 633724798 633726824 0.000000e+00 3537
11 TraesCS5D01G424900 chr3D 98.254 1718 22 7 1 1714 21893039 21894752 0.000000e+00 3000
12 TraesCS5D01G424900 chr3D 98.312 1007 11 2 1474 2474 21894763 21895769 0.000000e+00 1760
13 TraesCS5D01G424900 chr5A 97.913 1150 17 4 1332 2474 684322666 684323815 0.000000e+00 1984
14 TraesCS5D01G424900 chr5A 92.585 472 31 2 2489 2960 605247892 605247425 0.000000e+00 675
15 TraesCS5D01G424900 chr5B 93.725 255 11 3 2708 2960 595014737 595014486 7.740000e-101 377


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G424900 chr5D 483796867 483799826 2959 True 5467 5467 100.000 1 2960 1 chr5D.!!$R2 2959
1 TraesCS5D01G424900 chr5D 6209465 6211915 2450 True 4283 4283 98.209 1 2452 1 chr5D.!!$R1 2451
2 TraesCS5D01G424900 chr1A 554466816 554469298 2482 True 4361 4361 98.431 1 2474 1 chr1A.!!$R1 2473
3 TraesCS5D01G424900 chr1A 154076653 154078129 1476 False 2388 2388 95.878 925 2399 1 chr1A.!!$F1 1474
4 TraesCS5D01G424900 chr3B 201502305 201504784 2479 False 4331 4331 98.230 1 2474 1 chr3B.!!$F2 2473
5 TraesCS5D01G424900 chr3B 460160189 460162491 2302 True 3517 3517 94.270 172 2474 1 chr3B.!!$R1 2302
6 TraesCS5D01G424900 chr3B 10274477 10276124 1647 False 2940 2940 98.908 1 1645 1 chr3B.!!$F1 1644
7 TraesCS5D01G424900 chr1D 254485456 254487909 2453 False 4185 4185 97.340 1 2474 1 chr1D.!!$F3 2473
8 TraesCS5D01G424900 chr1D 244404392 244406835 2443 False 3888 3888 95.240 1 2474 1 chr1D.!!$F1 2473
9 TraesCS5D01G424900 chr1D 244419924 244422368 2444 False 3880 3880 95.194 1 2471 1 chr1D.!!$F2 2470
10 TraesCS5D01G424900 chr1B 633724798 633726824 2026 False 3537 3537 98.177 1 2025 1 chr1B.!!$F1 2024
11 TraesCS5D01G424900 chr3D 21893039 21895769 2730 False 2380 3000 98.283 1 2474 2 chr3D.!!$F1 2473
12 TraesCS5D01G424900 chr5A 684322666 684323815 1149 False 1984 1984 97.913 1332 2474 1 chr5A.!!$F1 1142

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
923 947 4.881273 ACTGTTGCAGTAGAATGACAACAA 59.119 37.5 15.43 0.0 43.46 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2684 2991 0.034616 GGCTCTCTTGGATGGATCGG 59.965 60.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
703 723 7.961351 AGATACATGTTTGAAATTTTGGGTCA 58.039 30.769 2.30 0.00 0.00 4.02
923 947 4.881273 ACTGTTGCAGTAGAATGACAACAA 59.119 37.500 15.43 0.00 43.46 2.83
1060 1086 7.356540 ACAGATAACTCGATCGATTTCTGTAG 58.643 38.462 30.26 17.65 33.65 2.74
1062 1088 4.640789 AACTCGATCGATTTCTGTAGCT 57.359 40.909 19.78 0.00 0.00 3.32
2492 2799 9.449719 AAAAAGTATGTTCCTCATCGATTACTT 57.550 29.630 8.40 8.40 37.91 2.24
2493 2800 8.649973 AAAGTATGTTCCTCATCGATTACTTC 57.350 34.615 12.75 0.00 37.91 3.01
2494 2801 6.750148 AGTATGTTCCTCATCGATTACTTCC 58.250 40.000 0.00 0.00 37.91 3.46
2495 2802 5.614324 ATGTTCCTCATCGATTACTTCCA 57.386 39.130 0.00 0.00 29.76 3.53
2496 2803 5.614324 TGTTCCTCATCGATTACTTCCAT 57.386 39.130 0.00 0.00 0.00 3.41
2497 2804 5.359756 TGTTCCTCATCGATTACTTCCATG 58.640 41.667 0.00 0.00 0.00 3.66
2498 2805 3.995199 TCCTCATCGATTACTTCCATGC 58.005 45.455 0.00 0.00 0.00 4.06
2499 2806 3.643320 TCCTCATCGATTACTTCCATGCT 59.357 43.478 0.00 0.00 0.00 3.79
2500 2807 3.993081 CCTCATCGATTACTTCCATGCTC 59.007 47.826 0.00 0.00 0.00 4.26
2501 2808 3.642705 TCATCGATTACTTCCATGCTCG 58.357 45.455 0.00 0.00 0.00 5.03
2502 2809 3.317993 TCATCGATTACTTCCATGCTCGA 59.682 43.478 0.00 0.00 39.18 4.04
2503 2810 4.021981 TCATCGATTACTTCCATGCTCGAT 60.022 41.667 0.00 0.00 44.13 3.59
2504 2811 5.183140 TCATCGATTACTTCCATGCTCGATA 59.817 40.000 0.00 0.00 42.15 2.92
2505 2812 5.447624 TCGATTACTTCCATGCTCGATAA 57.552 39.130 0.00 0.00 30.94 1.75
2506 2813 5.461526 TCGATTACTTCCATGCTCGATAAG 58.538 41.667 0.00 0.00 30.94 1.73
2507 2814 5.240844 TCGATTACTTCCATGCTCGATAAGA 59.759 40.000 0.00 0.00 30.94 2.10
2508 2815 5.920840 CGATTACTTCCATGCTCGATAAGAA 59.079 40.000 0.00 0.00 0.00 2.52
2509 2816 6.420903 CGATTACTTCCATGCTCGATAAGAAA 59.579 38.462 0.00 0.00 0.00 2.52
2510 2817 7.116948 CGATTACTTCCATGCTCGATAAGAAAT 59.883 37.037 0.00 0.00 0.00 2.17
2511 2818 5.998454 ACTTCCATGCTCGATAAGAAATG 57.002 39.130 0.00 0.00 0.00 2.32
2512 2819 4.818546 ACTTCCATGCTCGATAAGAAATGG 59.181 41.667 0.00 0.00 41.28 3.16
2513 2820 4.687901 TCCATGCTCGATAAGAAATGGA 57.312 40.909 0.00 0.00 43.97 3.41
2514 2821 5.034852 TCCATGCTCGATAAGAAATGGAA 57.965 39.130 8.76 0.00 43.58 3.53
2515 2822 5.624159 TCCATGCTCGATAAGAAATGGAAT 58.376 37.500 8.76 0.00 43.58 3.01
2516 2823 5.471116 TCCATGCTCGATAAGAAATGGAATG 59.529 40.000 8.76 0.00 43.58 2.67
2517 2824 5.335426 CCATGCTCGATAAGAAATGGAATGG 60.335 44.000 0.00 0.00 41.93 3.16
2518 2825 4.780815 TGCTCGATAAGAAATGGAATGGT 58.219 39.130 0.00 0.00 0.00 3.55
2519 2826 5.192927 TGCTCGATAAGAAATGGAATGGTT 58.807 37.500 0.00 0.00 0.00 3.67
2520 2827 5.066375 TGCTCGATAAGAAATGGAATGGTTG 59.934 40.000 0.00 0.00 0.00 3.77
2521 2828 5.506317 GCTCGATAAGAAATGGAATGGTTGG 60.506 44.000 0.00 0.00 0.00 3.77
2522 2829 4.887071 TCGATAAGAAATGGAATGGTTGGG 59.113 41.667 0.00 0.00 0.00 4.12
2523 2830 4.644685 CGATAAGAAATGGAATGGTTGGGT 59.355 41.667 0.00 0.00 0.00 4.51
2524 2831 5.450412 CGATAAGAAATGGAATGGTTGGGTG 60.450 44.000 0.00 0.00 0.00 4.61
2525 2832 3.258722 AGAAATGGAATGGTTGGGTGT 57.741 42.857 0.00 0.00 0.00 4.16
2526 2833 3.165071 AGAAATGGAATGGTTGGGTGTC 58.835 45.455 0.00 0.00 0.00 3.67
2527 2834 1.544724 AATGGAATGGTTGGGTGTCG 58.455 50.000 0.00 0.00 0.00 4.35
2528 2835 0.404040 ATGGAATGGTTGGGTGTCGT 59.596 50.000 0.00 0.00 0.00 4.34
2529 2836 1.057471 TGGAATGGTTGGGTGTCGTA 58.943 50.000 0.00 0.00 0.00 3.43
2530 2837 1.631388 TGGAATGGTTGGGTGTCGTAT 59.369 47.619 0.00 0.00 0.00 3.06
2531 2838 2.014128 GGAATGGTTGGGTGTCGTATG 58.986 52.381 0.00 0.00 0.00 2.39
2532 2839 1.400494 GAATGGTTGGGTGTCGTATGC 59.600 52.381 0.00 0.00 0.00 3.14
2533 2840 0.326595 ATGGTTGGGTGTCGTATGCA 59.673 50.000 0.00 0.00 0.00 3.96
2534 2841 0.108774 TGGTTGGGTGTCGTATGCAA 59.891 50.000 0.00 0.00 0.00 4.08
2535 2842 1.271652 TGGTTGGGTGTCGTATGCAAT 60.272 47.619 0.00 0.00 0.00 3.56
2536 2843 1.132262 GGTTGGGTGTCGTATGCAATG 59.868 52.381 0.00 0.00 0.00 2.82
2537 2844 0.808125 TTGGGTGTCGTATGCAATGC 59.192 50.000 0.00 0.00 0.00 3.56
2548 2855 2.927553 ATGCAATGCGTTCTTCTTCC 57.072 45.000 0.00 0.00 0.00 3.46
2549 2856 0.516877 TGCAATGCGTTCTTCTTCCG 59.483 50.000 0.00 0.00 0.00 4.30
2553 2860 3.112709 GCGTTCTTCTTCCGCGCT 61.113 61.111 5.56 0.00 44.00 5.92
2554 2861 1.804326 GCGTTCTTCTTCCGCGCTA 60.804 57.895 5.56 0.00 44.00 4.26
2555 2862 1.146358 GCGTTCTTCTTCCGCGCTAT 61.146 55.000 5.56 0.00 44.00 2.97
2556 2863 0.572590 CGTTCTTCTTCCGCGCTATG 59.427 55.000 5.56 0.00 0.00 2.23
2557 2864 1.641577 GTTCTTCTTCCGCGCTATGT 58.358 50.000 5.56 0.00 0.00 2.29
2558 2865 1.324736 GTTCTTCTTCCGCGCTATGTG 59.675 52.381 5.56 0.00 0.00 3.21
2559 2866 0.530744 TCTTCTTCCGCGCTATGTGT 59.469 50.000 5.56 0.00 0.00 3.72
2560 2867 0.924090 CTTCTTCCGCGCTATGTGTC 59.076 55.000 5.56 0.00 0.00 3.67
2561 2868 0.530744 TTCTTCCGCGCTATGTGTCT 59.469 50.000 5.56 0.00 0.00 3.41
2562 2869 0.530744 TCTTCCGCGCTATGTGTCTT 59.469 50.000 5.56 0.00 0.00 3.01
2563 2870 0.924090 CTTCCGCGCTATGTGTCTTC 59.076 55.000 5.56 0.00 0.00 2.87
2564 2871 0.245266 TTCCGCGCTATGTGTCTTCA 59.755 50.000 5.56 0.00 0.00 3.02
2565 2872 0.179137 TCCGCGCTATGTGTCTTCAG 60.179 55.000 5.56 0.00 0.00 3.02
2566 2873 1.633171 CGCGCTATGTGTCTTCAGC 59.367 57.895 5.56 0.00 0.00 4.26
2567 2874 1.756375 CGCGCTATGTGTCTTCAGCC 61.756 60.000 5.56 0.00 0.00 4.85
2568 2875 0.740868 GCGCTATGTGTCTTCAGCCA 60.741 55.000 0.00 0.00 0.00 4.75
2569 2876 1.945387 CGCTATGTGTCTTCAGCCAT 58.055 50.000 0.00 0.00 0.00 4.40
2570 2877 1.596260 CGCTATGTGTCTTCAGCCATG 59.404 52.381 0.00 0.00 0.00 3.66
2571 2878 1.945394 GCTATGTGTCTTCAGCCATGG 59.055 52.381 7.63 7.63 0.00 3.66
2572 2879 1.945394 CTATGTGTCTTCAGCCATGGC 59.055 52.381 30.12 30.12 42.33 4.40
2591 2898 3.441244 TGTGCCGACAGAGCTTATG 57.559 52.632 0.00 0.00 0.00 1.90
2592 2899 0.608130 TGTGCCGACAGAGCTTATGT 59.392 50.000 5.29 5.29 0.00 2.29
2593 2900 1.002366 GTGCCGACAGAGCTTATGTG 58.998 55.000 9.98 3.72 0.00 3.21
2594 2901 0.894835 TGCCGACAGAGCTTATGTGA 59.105 50.000 9.98 0.00 0.00 3.58
2595 2902 1.482182 TGCCGACAGAGCTTATGTGAT 59.518 47.619 9.98 0.00 0.00 3.06
2596 2903 2.093500 TGCCGACAGAGCTTATGTGATT 60.093 45.455 9.98 0.00 0.00 2.57
2597 2904 2.286294 GCCGACAGAGCTTATGTGATTG 59.714 50.000 9.98 0.00 0.00 2.67
2598 2905 2.868583 CCGACAGAGCTTATGTGATTGG 59.131 50.000 9.98 3.84 0.00 3.16
2599 2906 3.430790 CCGACAGAGCTTATGTGATTGGA 60.431 47.826 9.98 0.00 0.00 3.53
2600 2907 4.375272 CGACAGAGCTTATGTGATTGGAT 58.625 43.478 9.98 0.00 0.00 3.41
2601 2908 4.210746 CGACAGAGCTTATGTGATTGGATG 59.789 45.833 9.98 0.00 0.00 3.51
2602 2909 3.881688 ACAGAGCTTATGTGATTGGATGC 59.118 43.478 4.84 0.00 0.00 3.91
2603 2910 3.881089 CAGAGCTTATGTGATTGGATGCA 59.119 43.478 0.00 0.00 0.00 3.96
2604 2911 4.023963 CAGAGCTTATGTGATTGGATGCAG 60.024 45.833 0.00 0.00 0.00 4.41
2605 2912 2.621998 AGCTTATGTGATTGGATGCAGC 59.378 45.455 0.00 0.00 0.00 5.25
2606 2913 2.621998 GCTTATGTGATTGGATGCAGCT 59.378 45.455 0.22 0.00 0.00 4.24
2607 2914 3.067742 GCTTATGTGATTGGATGCAGCTT 59.932 43.478 0.22 0.00 0.00 3.74
2608 2915 4.441079 GCTTATGTGATTGGATGCAGCTTT 60.441 41.667 0.22 0.00 0.00 3.51
2609 2916 5.657474 CTTATGTGATTGGATGCAGCTTTT 58.343 37.500 0.22 0.00 0.00 2.27
2610 2917 4.546829 ATGTGATTGGATGCAGCTTTTT 57.453 36.364 0.22 0.00 0.00 1.94
2611 2918 3.655486 TGTGATTGGATGCAGCTTTTTG 58.345 40.909 0.22 0.00 0.00 2.44
2612 2919 2.414138 GTGATTGGATGCAGCTTTTTGC 59.586 45.455 0.22 0.00 44.33 3.68
2613 2920 2.004733 GATTGGATGCAGCTTTTTGCC 58.995 47.619 0.22 0.00 43.43 4.52
2614 2921 0.319727 TTGGATGCAGCTTTTTGCCG 60.320 50.000 0.22 0.00 43.43 5.69
2615 2922 1.177895 TGGATGCAGCTTTTTGCCGA 61.178 50.000 0.22 0.00 43.43 5.54
2616 2923 0.457337 GGATGCAGCTTTTTGCCGAG 60.457 55.000 0.22 0.00 43.43 4.63
2617 2924 1.074872 GATGCAGCTTTTTGCCGAGC 61.075 55.000 0.00 0.00 43.43 5.03
2618 2925 1.808531 ATGCAGCTTTTTGCCGAGCA 61.809 50.000 0.00 0.00 44.34 4.26
2635 2942 2.858622 CAATCGATGCACACCCAGT 58.141 52.632 0.00 0.00 0.00 4.00
2636 2943 0.729116 CAATCGATGCACACCCAGTC 59.271 55.000 0.00 0.00 0.00 3.51
2637 2944 0.324614 AATCGATGCACACCCAGTCA 59.675 50.000 0.00 0.00 0.00 3.41
2638 2945 0.324614 ATCGATGCACACCCAGTCAA 59.675 50.000 0.00 0.00 0.00 3.18
2639 2946 0.324614 TCGATGCACACCCAGTCAAT 59.675 50.000 0.00 0.00 0.00 2.57
2640 2947 0.448990 CGATGCACACCCAGTCAATG 59.551 55.000 0.00 0.00 0.00 2.82
2653 2960 4.778534 CAGTCAATGGATTTTGAGCACT 57.221 40.909 0.00 0.00 36.34 4.40
2654 2961 5.130292 CAGTCAATGGATTTTGAGCACTT 57.870 39.130 0.00 0.00 36.34 3.16
2655 2962 4.921515 CAGTCAATGGATTTTGAGCACTTG 59.078 41.667 0.00 0.00 36.34 3.16
2656 2963 4.828939 AGTCAATGGATTTTGAGCACTTGA 59.171 37.500 0.00 0.00 36.34 3.02
2657 2964 5.479375 AGTCAATGGATTTTGAGCACTTGAT 59.521 36.000 0.00 0.00 36.34 2.57
2658 2965 6.014840 AGTCAATGGATTTTGAGCACTTGATT 60.015 34.615 0.00 0.00 36.34 2.57
2659 2966 6.090358 GTCAATGGATTTTGAGCACTTGATTG 59.910 38.462 0.00 0.00 36.34 2.67
2660 2967 5.988310 ATGGATTTTGAGCACTTGATTGA 57.012 34.783 0.00 0.00 0.00 2.57
2661 2968 5.381174 TGGATTTTGAGCACTTGATTGAG 57.619 39.130 0.00 0.00 0.00 3.02
2662 2969 4.171754 GGATTTTGAGCACTTGATTGAGC 58.828 43.478 0.00 0.00 0.00 4.26
2663 2970 4.321452 GGATTTTGAGCACTTGATTGAGCA 60.321 41.667 0.00 0.00 0.00 4.26
2664 2971 4.652421 TTTTGAGCACTTGATTGAGCAA 57.348 36.364 0.00 0.00 0.00 3.91
2676 2983 7.928908 CTTGATTGAGCAAGTCTAGTATCTC 57.071 40.000 1.01 0.00 40.22 2.75
2677 2984 6.066054 TGATTGAGCAAGTCTAGTATCTCG 57.934 41.667 0.00 0.00 0.00 4.04
2678 2985 3.972950 TGAGCAAGTCTAGTATCTCGC 57.027 47.619 0.00 0.00 0.00 5.03
2679 2986 2.619177 TGAGCAAGTCTAGTATCTCGCC 59.381 50.000 0.00 0.00 0.00 5.54
2680 2987 2.619177 GAGCAAGTCTAGTATCTCGCCA 59.381 50.000 0.00 0.00 0.00 5.69
2681 2988 2.359531 AGCAAGTCTAGTATCTCGCCAC 59.640 50.000 0.00 0.00 0.00 5.01
2682 2989 2.855187 GCAAGTCTAGTATCTCGCCACG 60.855 54.545 0.00 0.00 0.00 4.94
2683 2990 2.612672 CAAGTCTAGTATCTCGCCACGA 59.387 50.000 0.00 0.00 0.00 4.35
2684 2991 2.211806 AGTCTAGTATCTCGCCACGAC 58.788 52.381 0.00 0.00 0.00 4.34
2685 2992 1.263752 GTCTAGTATCTCGCCACGACC 59.736 57.143 0.00 0.00 0.00 4.79
2686 2993 0.235144 CTAGTATCTCGCCACGACCG 59.765 60.000 0.00 0.00 0.00 4.79
2687 2994 0.179076 TAGTATCTCGCCACGACCGA 60.179 55.000 0.00 0.00 0.00 4.69
2688 2995 0.818445 AGTATCTCGCCACGACCGAT 60.818 55.000 0.00 0.00 33.83 4.18
2689 2996 0.385723 GTATCTCGCCACGACCGATC 60.386 60.000 0.00 0.00 33.83 3.69
2690 2997 1.512996 TATCTCGCCACGACCGATCC 61.513 60.000 0.00 0.00 33.83 3.36
2691 2998 3.822192 CTCGCCACGACCGATCCA 61.822 66.667 0.00 0.00 33.83 3.41
2692 2999 3.138930 CTCGCCACGACCGATCCAT 62.139 63.158 0.00 0.00 33.83 3.41
2693 3000 2.658593 CGCCACGACCGATCCATC 60.659 66.667 0.00 0.00 0.00 3.51
2694 3001 2.280186 GCCACGACCGATCCATCC 60.280 66.667 0.00 0.00 0.00 3.51
2695 3002 3.088941 GCCACGACCGATCCATCCA 62.089 63.158 0.00 0.00 0.00 3.41
2696 3003 1.520192 CCACGACCGATCCATCCAA 59.480 57.895 0.00 0.00 0.00 3.53
2697 3004 0.530650 CCACGACCGATCCATCCAAG 60.531 60.000 0.00 0.00 0.00 3.61
2698 3005 0.459899 CACGACCGATCCATCCAAGA 59.540 55.000 0.00 0.00 0.00 3.02
2699 3006 0.747255 ACGACCGATCCATCCAAGAG 59.253 55.000 0.00 0.00 0.00 2.85
2700 3007 1.032794 CGACCGATCCATCCAAGAGA 58.967 55.000 0.00 0.00 0.00 3.10
2701 3008 1.000827 CGACCGATCCATCCAAGAGAG 60.001 57.143 0.00 0.00 0.00 3.20
2702 3009 0.755686 ACCGATCCATCCAAGAGAGC 59.244 55.000 0.00 0.00 0.00 4.09
2703 3010 0.034616 CCGATCCATCCAAGAGAGCC 59.965 60.000 0.00 0.00 0.00 4.70
2704 3011 0.755079 CGATCCATCCAAGAGAGCCA 59.245 55.000 0.00 0.00 0.00 4.75
2705 3012 1.347050 CGATCCATCCAAGAGAGCCAT 59.653 52.381 0.00 0.00 0.00 4.40
2706 3013 2.612471 CGATCCATCCAAGAGAGCCATC 60.612 54.545 0.00 0.00 0.00 3.51
2707 3014 1.135094 TCCATCCAAGAGAGCCATCC 58.865 55.000 0.00 0.00 0.00 3.51
2708 3015 0.841961 CCATCCAAGAGAGCCATCCA 59.158 55.000 0.00 0.00 0.00 3.41
2709 3016 1.424302 CCATCCAAGAGAGCCATCCAT 59.576 52.381 0.00 0.00 0.00 3.41
2710 3017 2.505405 CATCCAAGAGAGCCATCCATG 58.495 52.381 0.00 0.00 0.00 3.66
2711 3018 0.182061 TCCAAGAGAGCCATCCATGC 59.818 55.000 0.00 0.00 0.00 4.06
2712 3019 0.822532 CCAAGAGAGCCATCCATGCC 60.823 60.000 0.00 0.00 0.00 4.40
2713 3020 0.183014 CAAGAGAGCCATCCATGCCT 59.817 55.000 0.00 0.00 0.00 4.75
2714 3021 0.924823 AAGAGAGCCATCCATGCCTT 59.075 50.000 0.00 0.00 0.00 4.35
2715 3022 0.924823 AGAGAGCCATCCATGCCTTT 59.075 50.000 0.00 0.00 0.00 3.11
2716 3023 1.287146 AGAGAGCCATCCATGCCTTTT 59.713 47.619 0.00 0.00 0.00 2.27
2717 3024 2.105766 GAGAGCCATCCATGCCTTTTT 58.894 47.619 0.00 0.00 0.00 1.94
2718 3025 1.829222 AGAGCCATCCATGCCTTTTTG 59.171 47.619 0.00 0.00 0.00 2.44
2719 3026 1.826720 GAGCCATCCATGCCTTTTTGA 59.173 47.619 0.00 0.00 0.00 2.69
2720 3027 1.551883 AGCCATCCATGCCTTTTTGAC 59.448 47.619 0.00 0.00 0.00 3.18
2721 3028 1.405933 GCCATCCATGCCTTTTTGACC 60.406 52.381 0.00 0.00 0.00 4.02
2722 3029 1.901159 CCATCCATGCCTTTTTGACCA 59.099 47.619 0.00 0.00 0.00 4.02
2723 3030 2.502538 CCATCCATGCCTTTTTGACCAT 59.497 45.455 0.00 0.00 0.00 3.55
2724 3031 3.431207 CCATCCATGCCTTTTTGACCATC 60.431 47.826 0.00 0.00 0.00 3.51
2725 3032 2.886913 TCCATGCCTTTTTGACCATCA 58.113 42.857 0.00 0.00 0.00 3.07
2726 3033 3.237746 TCCATGCCTTTTTGACCATCAA 58.762 40.909 0.00 0.00 34.03 2.57
2727 3034 3.839490 TCCATGCCTTTTTGACCATCAAT 59.161 39.130 0.00 0.00 36.11 2.57
2728 3035 4.286549 TCCATGCCTTTTTGACCATCAATT 59.713 37.500 0.00 0.00 36.11 2.32
2729 3036 5.005094 CCATGCCTTTTTGACCATCAATTT 58.995 37.500 0.00 0.00 36.11 1.82
2730 3037 6.013898 TCCATGCCTTTTTGACCATCAATTTA 60.014 34.615 0.00 0.00 36.11 1.40
2731 3038 6.654161 CCATGCCTTTTTGACCATCAATTTAA 59.346 34.615 0.00 0.00 36.11 1.52
2732 3039 7.174599 CCATGCCTTTTTGACCATCAATTTAAA 59.825 33.333 0.00 0.00 36.11 1.52
2733 3040 8.566260 CATGCCTTTTTGACCATCAATTTAAAA 58.434 29.630 0.00 0.00 36.11 1.52
2734 3041 8.152309 TGCCTTTTTGACCATCAATTTAAAAG 57.848 30.769 0.00 0.00 36.11 2.27
2735 3042 7.989741 TGCCTTTTTGACCATCAATTTAAAAGA 59.010 29.630 12.06 0.00 34.71 2.52
2736 3043 9.002600 GCCTTTTTGACCATCAATTTAAAAGAT 57.997 29.630 12.06 0.00 34.71 2.40
2742 3049 9.487790 TTGACCATCAATTTAAAAGATGTTTCC 57.512 29.630 22.25 13.56 37.93 3.13
2743 3050 8.869109 TGACCATCAATTTAAAAGATGTTTCCT 58.131 29.630 22.25 8.13 37.93 3.36
2744 3051 9.358872 GACCATCAATTTAAAAGATGTTTCCTC 57.641 33.333 22.25 11.36 37.93 3.71
2745 3052 8.028938 ACCATCAATTTAAAAGATGTTTCCTCG 58.971 33.333 22.25 13.19 37.93 4.63
2746 3053 8.243426 CCATCAATTTAAAAGATGTTTCCTCGA 58.757 33.333 22.25 0.00 37.93 4.04
2747 3054 9.793252 CATCAATTTAAAAGATGTTTCCTCGAT 57.207 29.630 18.65 0.00 35.57 3.59
2748 3055 9.793252 ATCAATTTAAAAGATGTTTCCTCGATG 57.207 29.630 5.90 0.00 0.00 3.84
2749 3056 7.754924 TCAATTTAAAAGATGTTTCCTCGATGC 59.245 33.333 0.00 0.00 0.00 3.91
2750 3057 5.560966 TTAAAAGATGTTTCCTCGATGCC 57.439 39.130 0.00 0.00 0.00 4.40
2751 3058 2.787473 AAGATGTTTCCTCGATGCCA 57.213 45.000 0.00 0.00 0.00 4.92
2752 3059 2.029838 AGATGTTTCCTCGATGCCAC 57.970 50.000 0.00 0.00 0.00 5.01
2753 3060 1.556911 AGATGTTTCCTCGATGCCACT 59.443 47.619 0.00 0.00 0.00 4.00
2754 3061 1.936547 GATGTTTCCTCGATGCCACTC 59.063 52.381 0.00 0.00 0.00 3.51
2755 3062 0.684535 TGTTTCCTCGATGCCACTCA 59.315 50.000 0.00 0.00 0.00 3.41
2756 3063 1.278985 TGTTTCCTCGATGCCACTCAT 59.721 47.619 0.00 0.00 38.32 2.90
2757 3064 2.290260 TGTTTCCTCGATGCCACTCATT 60.290 45.455 0.00 0.00 35.05 2.57
2758 3065 2.749621 GTTTCCTCGATGCCACTCATTT 59.250 45.455 0.00 0.00 35.05 2.32
2759 3066 2.315925 TCCTCGATGCCACTCATTTC 57.684 50.000 0.00 0.00 35.05 2.17
2760 3067 0.933097 CCTCGATGCCACTCATTTCG 59.067 55.000 0.00 0.00 35.05 3.46
2761 3068 1.471501 CCTCGATGCCACTCATTTCGA 60.472 52.381 0.00 0.00 34.82 3.71
2762 3069 2.270923 CTCGATGCCACTCATTTCGAA 58.729 47.619 0.00 0.00 36.24 3.71
2763 3070 2.270923 TCGATGCCACTCATTTCGAAG 58.729 47.619 0.00 0.00 34.42 3.79
2764 3071 2.002586 CGATGCCACTCATTTCGAAGT 58.997 47.619 0.00 0.00 35.05 3.01
2765 3072 2.029728 CGATGCCACTCATTTCGAAGTC 59.970 50.000 0.00 0.00 35.05 3.01
2766 3073 1.428448 TGCCACTCATTTCGAAGTCG 58.572 50.000 0.00 0.00 41.45 4.18
2767 3074 1.270094 TGCCACTCATTTCGAAGTCGT 60.270 47.619 0.00 0.00 40.80 4.34
2768 3075 1.126846 GCCACTCATTTCGAAGTCGTG 59.873 52.381 0.00 5.41 40.80 4.35
2769 3076 1.126846 CCACTCATTTCGAAGTCGTGC 59.873 52.381 11.76 0.00 40.80 5.34
2770 3077 2.061773 CACTCATTTCGAAGTCGTGCT 58.938 47.619 0.00 0.00 40.80 4.40
2771 3078 2.476619 CACTCATTTCGAAGTCGTGCTT 59.523 45.455 0.00 0.00 40.76 3.91
2772 3079 2.476619 ACTCATTTCGAAGTCGTGCTTG 59.523 45.455 0.00 0.00 37.59 4.01
2773 3080 1.194547 TCATTTCGAAGTCGTGCTTGC 59.805 47.619 0.00 0.00 37.59 4.01
2774 3081 1.069973 CATTTCGAAGTCGTGCTTGCA 60.070 47.619 0.00 0.00 37.59 4.08
2775 3082 1.225855 TTTCGAAGTCGTGCTTGCAT 58.774 45.000 0.00 0.00 37.59 3.96
2776 3083 0.512518 TTCGAAGTCGTGCTTGCATG 59.487 50.000 8.39 8.39 37.59 4.06
2777 3084 1.510623 CGAAGTCGTGCTTGCATGC 60.511 57.895 17.19 17.19 37.59 4.06
2778 3085 1.575922 GAAGTCGTGCTTGCATGCA 59.424 52.632 22.17 22.17 41.05 3.96
2784 3091 3.780357 TGCTTGCATGCACCACAT 58.220 50.000 22.58 0.00 40.66 3.21
2785 3092 2.051105 TGCTTGCATGCACCACATT 58.949 47.368 22.58 0.00 36.64 2.71
2786 3093 0.393448 TGCTTGCATGCACCACATTT 59.607 45.000 22.58 0.00 36.64 2.32
2787 3094 0.793861 GCTTGCATGCACCACATTTG 59.206 50.000 22.58 4.51 36.64 2.32
2788 3095 0.793861 CTTGCATGCACCACATTTGC 59.206 50.000 22.58 0.00 36.64 3.68
2795 3102 3.037431 TGCACCACATTTGCATTAACC 57.963 42.857 0.00 0.00 45.06 2.85
2796 3103 2.366590 TGCACCACATTTGCATTAACCA 59.633 40.909 0.00 0.00 45.06 3.67
2797 3104 3.181462 TGCACCACATTTGCATTAACCAA 60.181 39.130 0.00 0.00 45.06 3.67
2798 3105 3.432933 GCACCACATTTGCATTAACCAAG 59.567 43.478 0.00 0.00 39.93 3.61
2799 3106 4.630111 CACCACATTTGCATTAACCAAGT 58.370 39.130 0.00 0.00 0.00 3.16
2800 3107 4.448395 CACCACATTTGCATTAACCAAGTG 59.552 41.667 9.99 9.99 36.40 3.16
2801 3108 4.343526 ACCACATTTGCATTAACCAAGTGA 59.656 37.500 15.53 0.00 34.66 3.41
2802 3109 5.011943 ACCACATTTGCATTAACCAAGTGAT 59.988 36.000 15.53 0.00 34.66 3.06
2803 3110 5.933463 CCACATTTGCATTAACCAAGTGATT 59.067 36.000 15.53 0.00 34.66 2.57
2804 3111 6.427547 CCACATTTGCATTAACCAAGTGATTT 59.572 34.615 15.53 0.00 34.66 2.17
2805 3112 7.041235 CCACATTTGCATTAACCAAGTGATTTT 60.041 33.333 15.53 0.00 34.66 1.82
2806 3113 7.799447 CACATTTGCATTAACCAAGTGATTTTG 59.201 33.333 15.53 4.71 34.66 2.44
2807 3114 7.498570 ACATTTGCATTAACCAAGTGATTTTGT 59.501 29.630 15.53 0.00 34.66 2.83
2808 3115 7.475771 TTTGCATTAACCAAGTGATTTTGTC 57.524 32.000 0.00 0.00 0.00 3.18
2809 3116 6.403866 TGCATTAACCAAGTGATTTTGTCT 57.596 33.333 0.00 0.00 0.00 3.41
2810 3117 6.446318 TGCATTAACCAAGTGATTTTGTCTC 58.554 36.000 0.00 0.00 0.00 3.36
2811 3118 5.863935 GCATTAACCAAGTGATTTTGTCTCC 59.136 40.000 0.00 0.00 0.00 3.71
2812 3119 6.516527 GCATTAACCAAGTGATTTTGTCTCCA 60.517 38.462 0.00 0.00 0.00 3.86
2813 3120 7.432869 CATTAACCAAGTGATTTTGTCTCCAA 58.567 34.615 0.00 0.00 0.00 3.53
2814 3121 5.930837 AACCAAGTGATTTTGTCTCCAAA 57.069 34.783 0.00 0.00 38.77 3.28
2815 3122 5.262588 ACCAAGTGATTTTGTCTCCAAAC 57.737 39.130 0.00 0.00 40.19 2.93
2816 3123 4.202010 ACCAAGTGATTTTGTCTCCAAACG 60.202 41.667 0.00 0.00 40.19 3.60
2817 3124 3.626028 AGTGATTTTGTCTCCAAACGC 57.374 42.857 0.00 0.00 40.19 4.84
2818 3125 3.214328 AGTGATTTTGTCTCCAAACGCT 58.786 40.909 0.00 0.00 40.19 5.07
2819 3126 3.251004 AGTGATTTTGTCTCCAAACGCTC 59.749 43.478 0.00 0.00 40.19 5.03
2820 3127 3.003275 GTGATTTTGTCTCCAAACGCTCA 59.997 43.478 0.00 0.00 40.19 4.26
2821 3128 3.003275 TGATTTTGTCTCCAAACGCTCAC 59.997 43.478 0.00 0.00 40.19 3.51
2822 3129 1.329292 TTTTGTCTCCAAACGCTCACG 59.671 47.619 0.00 0.00 40.19 4.35
2823 3130 0.103390 TTGTCTCCAAACGCTCACGA 59.897 50.000 0.00 0.00 43.93 4.35
2824 3131 0.103390 TGTCTCCAAACGCTCACGAA 59.897 50.000 0.00 0.00 43.93 3.85
2825 3132 1.214367 GTCTCCAAACGCTCACGAAA 58.786 50.000 0.00 0.00 43.93 3.46
2826 3133 1.070776 GTCTCCAAACGCTCACGAAAC 60.071 52.381 0.00 0.00 43.93 2.78
2827 3134 0.934496 CTCCAAACGCTCACGAAACA 59.066 50.000 0.00 0.00 43.93 2.83
2828 3135 1.329292 CTCCAAACGCTCACGAAACAA 59.671 47.619 0.00 0.00 43.93 2.83
2829 3136 1.738350 TCCAAACGCTCACGAAACAAA 59.262 42.857 0.00 0.00 43.93 2.83
2830 3137 2.161808 TCCAAACGCTCACGAAACAAAA 59.838 40.909 0.00 0.00 43.93 2.44
2831 3138 3.112580 CCAAACGCTCACGAAACAAAAT 58.887 40.909 0.00 0.00 43.93 1.82
2832 3139 4.035324 TCCAAACGCTCACGAAACAAAATA 59.965 37.500 0.00 0.00 43.93 1.40
2833 3140 4.735822 CCAAACGCTCACGAAACAAAATAA 59.264 37.500 0.00 0.00 43.93 1.40
2834 3141 5.331235 CCAAACGCTCACGAAACAAAATAAC 60.331 40.000 0.00 0.00 43.93 1.89
2835 3142 3.880610 ACGCTCACGAAACAAAATAACC 58.119 40.909 0.00 0.00 43.93 2.85
2836 3143 3.562557 ACGCTCACGAAACAAAATAACCT 59.437 39.130 0.00 0.00 43.93 3.50
2837 3144 4.751098 ACGCTCACGAAACAAAATAACCTA 59.249 37.500 0.00 0.00 43.93 3.08
2838 3145 5.410439 ACGCTCACGAAACAAAATAACCTAT 59.590 36.000 0.00 0.00 43.93 2.57
2839 3146 5.732647 CGCTCACGAAACAAAATAACCTATG 59.267 40.000 0.00 0.00 43.93 2.23
2840 3147 6.401688 CGCTCACGAAACAAAATAACCTATGA 60.402 38.462 0.00 0.00 43.93 2.15
2841 3148 6.961554 GCTCACGAAACAAAATAACCTATGAG 59.038 38.462 0.00 0.00 33.46 2.90
2842 3149 7.372451 TCACGAAACAAAATAACCTATGAGG 57.628 36.000 0.00 0.00 42.49 3.86
2855 3162 3.733337 CCTATGAGGTGTGGCATTAGAC 58.267 50.000 0.00 0.00 0.00 2.59
2856 3163 3.389329 CCTATGAGGTGTGGCATTAGACT 59.611 47.826 0.00 0.00 0.00 3.24
2857 3164 3.550437 ATGAGGTGTGGCATTAGACTC 57.450 47.619 0.00 0.00 0.00 3.36
2858 3165 2.256306 TGAGGTGTGGCATTAGACTCA 58.744 47.619 0.00 0.00 0.00 3.41
2859 3166 2.028112 TGAGGTGTGGCATTAGACTCAC 60.028 50.000 0.00 0.00 44.57 3.51
2860 3167 1.977854 AGGTGTGGCATTAGACTCACA 59.022 47.619 5.96 0.00 46.56 3.58
2861 3168 2.371841 AGGTGTGGCATTAGACTCACAA 59.628 45.455 5.96 0.00 46.56 3.33
2862 3169 3.146066 GGTGTGGCATTAGACTCACAAA 58.854 45.455 5.96 0.00 46.56 2.83
2863 3170 3.568007 GGTGTGGCATTAGACTCACAAAA 59.432 43.478 5.96 0.00 46.56 2.44
2864 3171 4.037446 GGTGTGGCATTAGACTCACAAAAA 59.963 41.667 5.96 0.00 46.56 1.94
2865 3172 5.278957 GGTGTGGCATTAGACTCACAAAAAT 60.279 40.000 5.96 0.00 46.56 1.82
2866 3173 6.215845 GTGTGGCATTAGACTCACAAAAATT 58.784 36.000 0.00 0.00 44.65 1.82
2867 3174 6.144402 GTGTGGCATTAGACTCACAAAAATTG 59.856 38.462 0.00 0.00 44.65 2.32
2868 3175 6.183360 TGTGGCATTAGACTCACAAAAATTGT 60.183 34.615 0.00 0.00 46.75 2.71
2877 3184 0.919981 ACAAAAATTGTGTGCGTGCG 59.080 45.000 0.00 0.00 43.48 5.34
2878 3185 0.919981 CAAAAATTGTGTGCGTGCGT 59.080 45.000 0.00 0.00 0.00 5.24
2879 3186 0.919981 AAAAATTGTGTGCGTGCGTG 59.080 45.000 0.00 0.00 0.00 5.34
2880 3187 0.179150 AAAATTGTGTGCGTGCGTGT 60.179 45.000 0.00 0.00 0.00 4.49
2881 3188 0.865218 AAATTGTGTGCGTGCGTGTG 60.865 50.000 0.00 0.00 0.00 3.82
2882 3189 1.987704 AATTGTGTGCGTGCGTGTGT 61.988 50.000 0.00 0.00 0.00 3.72
2883 3190 2.645281 ATTGTGTGCGTGCGTGTGTG 62.645 55.000 0.00 0.00 0.00 3.82
2884 3191 3.860125 GTGTGCGTGCGTGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
2885 3192 3.858989 TGTGCGTGCGTGTGTGTG 61.859 61.111 0.00 0.00 0.00 3.82
2886 3193 3.559344 GTGCGTGCGTGTGTGTGA 61.559 61.111 0.00 0.00 0.00 3.58
2887 3194 2.815647 TGCGTGCGTGTGTGTGAA 60.816 55.556 0.00 0.00 0.00 3.18
2888 3195 2.350760 GCGTGCGTGTGTGTGAAC 60.351 61.111 0.00 0.00 0.00 3.18
2889 3196 2.323105 CGTGCGTGTGTGTGAACC 59.677 61.111 0.00 0.00 0.00 3.62
2890 3197 2.323105 GTGCGTGTGTGTGAACCG 59.677 61.111 0.00 0.00 0.00 4.44
2891 3198 2.168503 GTGCGTGTGTGTGAACCGA 61.169 57.895 0.00 0.00 0.00 4.69
2892 3199 2.168503 TGCGTGTGTGTGAACCGAC 61.169 57.895 0.00 0.00 0.00 4.79
2893 3200 2.877974 GCGTGTGTGTGAACCGACC 61.878 63.158 0.00 0.00 0.00 4.79
2894 3201 1.227147 CGTGTGTGTGAACCGACCT 60.227 57.895 0.00 0.00 0.00 3.85
2895 3202 1.213094 CGTGTGTGTGAACCGACCTC 61.213 60.000 0.00 0.00 0.00 3.85
2896 3203 0.104304 GTGTGTGTGAACCGACCTCT 59.896 55.000 0.00 0.00 0.00 3.69
2897 3204 1.338973 GTGTGTGTGAACCGACCTCTA 59.661 52.381 0.00 0.00 0.00 2.43
2898 3205 1.611977 TGTGTGTGAACCGACCTCTAG 59.388 52.381 0.00 0.00 0.00 2.43
2899 3206 1.067776 GTGTGTGAACCGACCTCTAGG 60.068 57.143 0.00 0.00 42.17 3.02
2900 3207 0.108756 GTGTGAACCGACCTCTAGGC 60.109 60.000 0.00 0.00 39.32 3.93
2901 3208 0.251653 TGTGAACCGACCTCTAGGCT 60.252 55.000 0.00 0.00 39.32 4.58
2902 3209 0.173708 GTGAACCGACCTCTAGGCTG 59.826 60.000 0.00 0.00 39.32 4.85
2903 3210 0.970937 TGAACCGACCTCTAGGCTGG 60.971 60.000 0.00 0.00 39.32 4.85
2904 3211 1.677637 GAACCGACCTCTAGGCTGGG 61.678 65.000 10.83 0.00 39.32 4.45
2905 3212 2.164332 AACCGACCTCTAGGCTGGGA 62.164 60.000 10.83 0.00 39.32 4.37
2906 3213 1.381327 CCGACCTCTAGGCTGGGAA 60.381 63.158 0.00 0.00 39.32 3.97
2907 3214 1.677637 CCGACCTCTAGGCTGGGAAC 61.678 65.000 0.00 0.00 39.32 3.62
2908 3215 0.684805 CGACCTCTAGGCTGGGAACT 60.685 60.000 0.00 0.00 39.32 3.01
2909 3216 0.827368 GACCTCTAGGCTGGGAACTG 59.173 60.000 0.00 0.00 39.32 3.16
2924 3231 7.375106 CTGGGAACTGCAAAGATCATATATC 57.625 40.000 0.00 0.00 0.00 1.63
2925 3232 7.083062 TGGGAACTGCAAAGATCATATATCT 57.917 36.000 0.00 0.00 0.00 1.98
2926 3233 8.206126 TGGGAACTGCAAAGATCATATATCTA 57.794 34.615 0.00 0.00 0.00 1.98
2927 3234 8.829746 TGGGAACTGCAAAGATCATATATCTAT 58.170 33.333 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
833 857 9.625747 AAAGAATTTTGCTAAAATGGAAAAGGA 57.374 25.926 0.00 0.00 40.05 3.36
923 947 8.305317 GCTAATCTAGTTCCCTATACACGAATT 58.695 37.037 0.00 0.00 0.00 2.17
1060 1086 9.383462 CCGAGTTATTACGTATATCATGATAGC 57.617 37.037 19.73 13.80 0.00 2.97
2474 2781 5.359756 CATGGAAGTAATCGATGAGGAACA 58.640 41.667 0.00 0.00 44.49 3.18
2475 2782 4.212214 GCATGGAAGTAATCGATGAGGAAC 59.788 45.833 0.00 0.00 44.49 3.62
2476 2783 4.101585 AGCATGGAAGTAATCGATGAGGAA 59.898 41.667 0.00 0.00 44.49 3.36
2477 2784 3.643320 AGCATGGAAGTAATCGATGAGGA 59.357 43.478 0.00 0.00 44.49 3.71
2478 2785 3.993081 GAGCATGGAAGTAATCGATGAGG 59.007 47.826 0.00 0.00 44.49 3.86
2479 2786 3.672397 CGAGCATGGAAGTAATCGATGAG 59.328 47.826 0.00 0.00 44.49 2.90
2480 2787 3.317993 TCGAGCATGGAAGTAATCGATGA 59.682 43.478 0.00 0.00 44.49 2.92
2481 2788 3.642705 TCGAGCATGGAAGTAATCGATG 58.357 45.455 0.00 0.00 44.52 3.84
2482 2789 4.527509 ATCGAGCATGGAAGTAATCGAT 57.472 40.909 0.00 0.00 43.02 3.59
2483 2790 5.240844 TCTTATCGAGCATGGAAGTAATCGA 59.759 40.000 0.00 0.00 42.58 3.59
2484 2791 5.461526 TCTTATCGAGCATGGAAGTAATCG 58.538 41.667 0.00 0.00 0.00 3.34
2485 2792 7.715265 TTTCTTATCGAGCATGGAAGTAATC 57.285 36.000 0.00 0.00 0.00 1.75
2486 2793 7.173907 CCATTTCTTATCGAGCATGGAAGTAAT 59.826 37.037 0.00 0.00 37.79 1.89
2487 2794 6.483307 CCATTTCTTATCGAGCATGGAAGTAA 59.517 38.462 0.00 0.00 37.79 2.24
2488 2795 5.991606 CCATTTCTTATCGAGCATGGAAGTA 59.008 40.000 0.00 0.00 37.79 2.24
2489 2796 4.818546 CCATTTCTTATCGAGCATGGAAGT 59.181 41.667 0.00 0.00 37.79 3.01
2490 2797 5.059161 TCCATTTCTTATCGAGCATGGAAG 58.941 41.667 0.00 0.00 39.82 3.46
2491 2798 5.034852 TCCATTTCTTATCGAGCATGGAA 57.965 39.130 0.00 0.00 39.82 3.53
2492 2799 4.687901 TCCATTTCTTATCGAGCATGGA 57.312 40.909 0.00 0.00 40.18 3.41
2493 2800 5.335426 CCATTCCATTTCTTATCGAGCATGG 60.335 44.000 0.00 0.00 37.31 3.66
2494 2801 5.240183 ACCATTCCATTTCTTATCGAGCATG 59.760 40.000 0.00 0.00 0.00 4.06
2495 2802 5.380043 ACCATTCCATTTCTTATCGAGCAT 58.620 37.500 0.00 0.00 0.00 3.79
2496 2803 4.780815 ACCATTCCATTTCTTATCGAGCA 58.219 39.130 0.00 0.00 0.00 4.26
2497 2804 5.506317 CCAACCATTCCATTTCTTATCGAGC 60.506 44.000 0.00 0.00 0.00 5.03
2498 2805 5.009010 CCCAACCATTCCATTTCTTATCGAG 59.991 44.000 0.00 0.00 0.00 4.04
2499 2806 4.887071 CCCAACCATTCCATTTCTTATCGA 59.113 41.667 0.00 0.00 0.00 3.59
2500 2807 4.644685 ACCCAACCATTCCATTTCTTATCG 59.355 41.667 0.00 0.00 0.00 2.92
2501 2808 5.422012 ACACCCAACCATTCCATTTCTTATC 59.578 40.000 0.00 0.00 0.00 1.75
2502 2809 5.341169 ACACCCAACCATTCCATTTCTTAT 58.659 37.500 0.00 0.00 0.00 1.73
2503 2810 4.746466 ACACCCAACCATTCCATTTCTTA 58.254 39.130 0.00 0.00 0.00 2.10
2504 2811 3.578282 GACACCCAACCATTCCATTTCTT 59.422 43.478 0.00 0.00 0.00 2.52
2505 2812 3.165071 GACACCCAACCATTCCATTTCT 58.835 45.455 0.00 0.00 0.00 2.52
2506 2813 2.094752 CGACACCCAACCATTCCATTTC 60.095 50.000 0.00 0.00 0.00 2.17
2507 2814 1.892474 CGACACCCAACCATTCCATTT 59.108 47.619 0.00 0.00 0.00 2.32
2508 2815 1.203001 ACGACACCCAACCATTCCATT 60.203 47.619 0.00 0.00 0.00 3.16
2509 2816 0.404040 ACGACACCCAACCATTCCAT 59.596 50.000 0.00 0.00 0.00 3.41
2510 2817 1.057471 TACGACACCCAACCATTCCA 58.943 50.000 0.00 0.00 0.00 3.53
2511 2818 2.014128 CATACGACACCCAACCATTCC 58.986 52.381 0.00 0.00 0.00 3.01
2512 2819 1.400494 GCATACGACACCCAACCATTC 59.600 52.381 0.00 0.00 0.00 2.67
2513 2820 1.271652 TGCATACGACACCCAACCATT 60.272 47.619 0.00 0.00 0.00 3.16
2514 2821 0.326595 TGCATACGACACCCAACCAT 59.673 50.000 0.00 0.00 0.00 3.55
2515 2822 0.108774 TTGCATACGACACCCAACCA 59.891 50.000 0.00 0.00 0.00 3.67
2516 2823 1.132262 CATTGCATACGACACCCAACC 59.868 52.381 0.00 0.00 0.00 3.77
2517 2824 1.467374 GCATTGCATACGACACCCAAC 60.467 52.381 3.15 0.00 0.00 3.77
2518 2825 0.808125 GCATTGCATACGACACCCAA 59.192 50.000 3.15 0.00 0.00 4.12
2519 2826 1.365368 CGCATTGCATACGACACCCA 61.365 55.000 9.69 0.00 0.00 4.51
2520 2827 1.351707 CGCATTGCATACGACACCC 59.648 57.895 9.69 0.00 0.00 4.61
2521 2828 0.446222 AACGCATTGCATACGACACC 59.554 50.000 9.69 0.00 0.00 4.16
2522 2829 1.393539 AGAACGCATTGCATACGACAC 59.606 47.619 9.69 2.34 0.00 3.67
2523 2830 1.720805 AGAACGCATTGCATACGACA 58.279 45.000 9.69 0.00 0.00 4.35
2524 2831 2.348666 AGAAGAACGCATTGCATACGAC 59.651 45.455 9.69 4.61 0.00 4.34
2525 2832 2.616960 AGAAGAACGCATTGCATACGA 58.383 42.857 9.69 0.00 0.00 3.43
2526 2833 3.345714 GAAGAAGAACGCATTGCATACG 58.654 45.455 9.69 0.00 0.00 3.06
2527 2834 3.685058 GGAAGAAGAACGCATTGCATAC 58.315 45.455 9.69 0.00 0.00 2.39
2528 2835 2.351418 CGGAAGAAGAACGCATTGCATA 59.649 45.455 9.69 0.00 0.00 3.14
2529 2836 1.131126 CGGAAGAAGAACGCATTGCAT 59.869 47.619 9.69 0.00 0.00 3.96
2530 2837 0.516877 CGGAAGAAGAACGCATTGCA 59.483 50.000 9.69 0.00 0.00 4.08
2531 2838 3.296516 CGGAAGAAGAACGCATTGC 57.703 52.632 0.00 0.00 0.00 3.56
2537 2844 0.572590 CATAGCGCGGAAGAAGAACG 59.427 55.000 8.83 0.00 0.00 3.95
2538 2845 1.324736 CACATAGCGCGGAAGAAGAAC 59.675 52.381 8.83 0.00 0.00 3.01
2539 2846 1.067142 ACACATAGCGCGGAAGAAGAA 60.067 47.619 8.83 0.00 0.00 2.52
2540 2847 0.530744 ACACATAGCGCGGAAGAAGA 59.469 50.000 8.83 0.00 0.00 2.87
2541 2848 0.924090 GACACATAGCGCGGAAGAAG 59.076 55.000 8.83 0.00 0.00 2.85
2542 2849 0.530744 AGACACATAGCGCGGAAGAA 59.469 50.000 8.83 0.00 0.00 2.52
2543 2850 0.530744 AAGACACATAGCGCGGAAGA 59.469 50.000 8.83 0.00 0.00 2.87
2544 2851 0.924090 GAAGACACATAGCGCGGAAG 59.076 55.000 8.83 0.00 0.00 3.46
2545 2852 0.245266 TGAAGACACATAGCGCGGAA 59.755 50.000 8.83 0.00 0.00 4.30
2546 2853 0.179137 CTGAAGACACATAGCGCGGA 60.179 55.000 8.83 0.00 0.00 5.54
2547 2854 1.756375 GCTGAAGACACATAGCGCGG 61.756 60.000 8.83 0.00 0.00 6.46
2548 2855 1.633171 GCTGAAGACACATAGCGCG 59.367 57.895 0.00 0.00 0.00 6.86
2549 2856 0.740868 TGGCTGAAGACACATAGCGC 60.741 55.000 0.00 0.00 37.05 5.92
2550 2857 1.596260 CATGGCTGAAGACACATAGCG 59.404 52.381 0.00 0.00 34.80 4.26
2551 2858 1.945394 CCATGGCTGAAGACACATAGC 59.055 52.381 0.00 0.00 34.80 2.97
2552 2859 1.945394 GCCATGGCTGAAGACACATAG 59.055 52.381 29.98 0.00 34.80 2.23
2553 2860 2.042686 GCCATGGCTGAAGACACATA 57.957 50.000 29.98 0.00 34.80 2.29
2554 2861 2.877975 GCCATGGCTGAAGACACAT 58.122 52.632 29.98 0.00 34.80 3.21
2555 2862 4.402851 GCCATGGCTGAAGACACA 57.597 55.556 29.98 0.00 34.80 3.72
2573 2880 0.608130 ACATAAGCTCTGTCGGCACA 59.392 50.000 0.00 0.00 0.00 4.57
2574 2881 1.002366 CACATAAGCTCTGTCGGCAC 58.998 55.000 0.00 0.00 0.00 5.01
2575 2882 0.894835 TCACATAAGCTCTGTCGGCA 59.105 50.000 0.00 0.00 0.00 5.69
2576 2883 2.231215 ATCACATAAGCTCTGTCGGC 57.769 50.000 0.00 0.00 0.00 5.54
2577 2884 2.868583 CCAATCACATAAGCTCTGTCGG 59.131 50.000 0.00 0.00 0.00 4.79
2578 2885 3.785486 TCCAATCACATAAGCTCTGTCG 58.215 45.455 0.00 0.00 0.00 4.35
2579 2886 4.024218 GCATCCAATCACATAAGCTCTGTC 60.024 45.833 0.00 0.00 0.00 3.51
2580 2887 3.881688 GCATCCAATCACATAAGCTCTGT 59.118 43.478 0.00 0.00 0.00 3.41
2581 2888 3.881089 TGCATCCAATCACATAAGCTCTG 59.119 43.478 0.00 0.00 0.00 3.35
2582 2889 4.135306 CTGCATCCAATCACATAAGCTCT 58.865 43.478 0.00 0.00 0.00 4.09
2583 2890 3.304525 GCTGCATCCAATCACATAAGCTC 60.305 47.826 0.00 0.00 0.00 4.09
2584 2891 2.621998 GCTGCATCCAATCACATAAGCT 59.378 45.455 0.00 0.00 0.00 3.74
2585 2892 2.621998 AGCTGCATCCAATCACATAAGC 59.378 45.455 1.02 0.00 0.00 3.09
2586 2893 4.913335 AAGCTGCATCCAATCACATAAG 57.087 40.909 1.02 0.00 0.00 1.73
2587 2894 5.664294 AAAAGCTGCATCCAATCACATAA 57.336 34.783 1.02 0.00 0.00 1.90
2588 2895 5.412640 CAAAAAGCTGCATCCAATCACATA 58.587 37.500 1.02 0.00 0.00 2.29
2589 2896 4.250464 CAAAAAGCTGCATCCAATCACAT 58.750 39.130 1.02 0.00 0.00 3.21
2590 2897 3.655486 CAAAAAGCTGCATCCAATCACA 58.345 40.909 1.02 0.00 0.00 3.58
2591 2898 2.414138 GCAAAAAGCTGCATCCAATCAC 59.586 45.455 1.02 0.00 42.17 3.06
2592 2899 2.613474 GGCAAAAAGCTGCATCCAATCA 60.613 45.455 1.02 0.00 44.52 2.57
2593 2900 2.004733 GGCAAAAAGCTGCATCCAATC 58.995 47.619 1.02 0.00 44.52 2.67
2594 2901 1.673626 CGGCAAAAAGCTGCATCCAAT 60.674 47.619 1.02 0.00 43.88 3.16
2595 2902 0.319727 CGGCAAAAAGCTGCATCCAA 60.320 50.000 1.02 0.00 43.88 3.53
2596 2903 1.289694 CGGCAAAAAGCTGCATCCA 59.710 52.632 1.02 0.00 43.88 3.41
2597 2904 4.173971 CGGCAAAAAGCTGCATCC 57.826 55.556 1.02 0.00 43.88 3.51
2617 2924 0.729116 GACTGGGTGTGCATCGATTG 59.271 55.000 0.00 0.00 0.00 2.67
2618 2925 0.324614 TGACTGGGTGTGCATCGATT 59.675 50.000 0.00 0.00 0.00 3.34
2619 2926 0.324614 TTGACTGGGTGTGCATCGAT 59.675 50.000 0.00 0.00 0.00 3.59
2620 2927 0.324614 ATTGACTGGGTGTGCATCGA 59.675 50.000 0.00 0.00 0.00 3.59
2621 2928 0.448990 CATTGACTGGGTGTGCATCG 59.551 55.000 0.00 0.00 0.00 3.84
2622 2929 0.813184 CCATTGACTGGGTGTGCATC 59.187 55.000 0.00 0.00 41.82 3.91
2623 2930 0.405198 TCCATTGACTGGGTGTGCAT 59.595 50.000 0.00 0.00 45.98 3.96
2624 2931 0.405198 ATCCATTGACTGGGTGTGCA 59.595 50.000 0.00 0.00 45.98 4.57
2625 2932 1.549203 AATCCATTGACTGGGTGTGC 58.451 50.000 0.00 0.00 45.98 4.57
2626 2933 3.573538 TCAAAATCCATTGACTGGGTGTG 59.426 43.478 0.00 0.00 45.98 3.82
2627 2934 3.828451 CTCAAAATCCATTGACTGGGTGT 59.172 43.478 0.00 0.00 45.98 4.16
2628 2935 3.367703 GCTCAAAATCCATTGACTGGGTG 60.368 47.826 0.00 0.00 45.98 4.61
2629 2936 2.827921 GCTCAAAATCCATTGACTGGGT 59.172 45.455 0.00 0.00 45.98 4.51
2630 2937 2.827322 TGCTCAAAATCCATTGACTGGG 59.173 45.455 0.00 0.00 45.98 4.45
2632 2939 4.778534 AGTGCTCAAAATCCATTGACTG 57.221 40.909 0.00 0.00 35.55 3.51
2633 2940 4.828939 TCAAGTGCTCAAAATCCATTGACT 59.171 37.500 0.00 0.00 35.55 3.41
2634 2941 5.125100 TCAAGTGCTCAAAATCCATTGAC 57.875 39.130 0.00 0.00 35.55 3.18
2635 2942 5.988310 ATCAAGTGCTCAAAATCCATTGA 57.012 34.783 0.00 0.00 37.70 2.57
2636 2943 6.160684 TCAATCAAGTGCTCAAAATCCATTG 58.839 36.000 0.00 0.00 0.00 2.82
2637 2944 6.349243 TCAATCAAGTGCTCAAAATCCATT 57.651 33.333 0.00 0.00 0.00 3.16
2638 2945 5.623824 GCTCAATCAAGTGCTCAAAATCCAT 60.624 40.000 0.00 0.00 0.00 3.41
2639 2946 4.321452 GCTCAATCAAGTGCTCAAAATCCA 60.321 41.667 0.00 0.00 0.00 3.41
2640 2947 4.171754 GCTCAATCAAGTGCTCAAAATCC 58.828 43.478 0.00 0.00 0.00 3.01
2641 2948 4.801891 TGCTCAATCAAGTGCTCAAAATC 58.198 39.130 0.00 0.00 0.00 2.17
2642 2949 4.859304 TGCTCAATCAAGTGCTCAAAAT 57.141 36.364 0.00 0.00 0.00 1.82
2643 2950 4.613944 CTTGCTCAATCAAGTGCTCAAAA 58.386 39.130 0.00 0.00 38.81 2.44
2644 2951 4.233123 CTTGCTCAATCAAGTGCTCAAA 57.767 40.909 0.00 0.00 38.81 2.69
2645 2952 3.909776 CTTGCTCAATCAAGTGCTCAA 57.090 42.857 0.00 0.00 38.81 3.02
2652 2959 6.636447 CGAGATACTAGACTTGCTCAATCAAG 59.364 42.308 0.00 2.33 46.57 3.02
2653 2960 6.499172 CGAGATACTAGACTTGCTCAATCAA 58.501 40.000 0.00 0.00 0.00 2.57
2654 2961 5.506483 GCGAGATACTAGACTTGCTCAATCA 60.506 44.000 15.65 0.00 39.57 2.57
2655 2962 4.915085 GCGAGATACTAGACTTGCTCAATC 59.085 45.833 15.65 0.00 39.57 2.67
2656 2963 4.261825 GGCGAGATACTAGACTTGCTCAAT 60.262 45.833 19.35 0.00 41.61 2.57
2657 2964 3.066900 GGCGAGATACTAGACTTGCTCAA 59.933 47.826 19.35 0.00 41.61 3.02
2658 2965 2.619177 GGCGAGATACTAGACTTGCTCA 59.381 50.000 19.35 0.00 41.61 4.26
2659 2966 2.619177 TGGCGAGATACTAGACTTGCTC 59.381 50.000 19.35 13.63 41.61 4.26
2660 2967 2.359531 GTGGCGAGATACTAGACTTGCT 59.640 50.000 19.35 3.11 41.61 3.91
2661 2968 2.733517 GTGGCGAGATACTAGACTTGC 58.266 52.381 15.03 15.03 41.29 4.01
2662 2969 2.612672 TCGTGGCGAGATACTAGACTTG 59.387 50.000 0.00 0.00 0.00 3.16
2663 2970 2.613133 GTCGTGGCGAGATACTAGACTT 59.387 50.000 0.00 0.00 36.23 3.01
2664 2971 2.211806 GTCGTGGCGAGATACTAGACT 58.788 52.381 0.00 0.00 36.23 3.24
2665 2972 1.263752 GGTCGTGGCGAGATACTAGAC 59.736 57.143 0.00 0.00 36.23 2.59
2666 2973 1.590932 GGTCGTGGCGAGATACTAGA 58.409 55.000 0.00 0.00 36.23 2.43
2667 2974 0.235144 CGGTCGTGGCGAGATACTAG 59.765 60.000 0.00 0.00 36.23 2.57
2668 2975 0.179076 TCGGTCGTGGCGAGATACTA 60.179 55.000 0.00 0.00 36.23 1.82
2669 2976 0.818445 ATCGGTCGTGGCGAGATACT 60.818 55.000 0.00 0.00 36.23 2.12
2670 2977 0.385723 GATCGGTCGTGGCGAGATAC 60.386 60.000 0.00 0.00 36.23 2.24
2671 2978 1.512996 GGATCGGTCGTGGCGAGATA 61.513 60.000 0.00 0.00 36.23 1.98
2672 2979 2.722487 GATCGGTCGTGGCGAGAT 59.278 61.111 0.00 0.00 36.23 2.75
2673 2980 3.515286 GGATCGGTCGTGGCGAGA 61.515 66.667 0.00 0.00 36.23 4.04
2674 2981 3.138930 ATGGATCGGTCGTGGCGAG 62.139 63.158 0.00 0.00 36.23 5.03
2675 2982 3.133767 GATGGATCGGTCGTGGCGA 62.134 63.158 0.00 0.00 0.00 5.54
2676 2983 2.658593 GATGGATCGGTCGTGGCG 60.659 66.667 0.00 0.00 0.00 5.69
2677 2984 2.280186 GGATGGATCGGTCGTGGC 60.280 66.667 0.00 0.00 0.00 5.01
2678 2985 0.530650 CTTGGATGGATCGGTCGTGG 60.531 60.000 0.00 0.00 0.00 4.94
2679 2986 0.459899 TCTTGGATGGATCGGTCGTG 59.540 55.000 0.00 0.00 0.00 4.35
2680 2987 0.747255 CTCTTGGATGGATCGGTCGT 59.253 55.000 0.00 0.00 0.00 4.34
2681 2988 1.000827 CTCTCTTGGATGGATCGGTCG 60.001 57.143 0.00 0.00 0.00 4.79
2682 2989 1.270041 GCTCTCTTGGATGGATCGGTC 60.270 57.143 0.00 0.00 0.00 4.79
2683 2990 0.755686 GCTCTCTTGGATGGATCGGT 59.244 55.000 0.00 0.00 0.00 4.69
2684 2991 0.034616 GGCTCTCTTGGATGGATCGG 59.965 60.000 0.00 0.00 0.00 4.18
2685 2992 0.755079 TGGCTCTCTTGGATGGATCG 59.245 55.000 0.00 0.00 0.00 3.69
2686 2993 2.290197 GGATGGCTCTCTTGGATGGATC 60.290 54.545 0.00 0.00 0.00 3.36
2687 2994 1.704070 GGATGGCTCTCTTGGATGGAT 59.296 52.381 0.00 0.00 0.00 3.41
2688 2995 1.135094 GGATGGCTCTCTTGGATGGA 58.865 55.000 0.00 0.00 0.00 3.41
2689 2996 0.841961 TGGATGGCTCTCTTGGATGG 59.158 55.000 0.00 0.00 0.00 3.51
2690 2997 2.505405 CATGGATGGCTCTCTTGGATG 58.495 52.381 0.00 0.00 0.00 3.51
2691 2998 1.202903 GCATGGATGGCTCTCTTGGAT 60.203 52.381 0.00 0.00 0.00 3.41
2692 2999 0.182061 GCATGGATGGCTCTCTTGGA 59.818 55.000 0.00 0.00 0.00 3.53
2693 3000 2.716814 GCATGGATGGCTCTCTTGG 58.283 57.895 0.00 0.00 0.00 3.61
2702 3009 1.901159 TGGTCAAAAAGGCATGGATGG 59.099 47.619 0.00 0.00 0.00 3.51
2703 3010 3.196039 TGATGGTCAAAAAGGCATGGATG 59.804 43.478 0.00 0.00 0.00 3.51
2704 3011 3.443052 TGATGGTCAAAAAGGCATGGAT 58.557 40.909 0.00 0.00 0.00 3.41
2705 3012 2.886913 TGATGGTCAAAAAGGCATGGA 58.113 42.857 0.00 0.00 0.00 3.41
2706 3013 3.681593 TTGATGGTCAAAAAGGCATGG 57.318 42.857 0.00 0.00 32.71 3.66
2707 3014 7.670009 TTAAATTGATGGTCAAAAAGGCATG 57.330 32.000 0.00 0.00 40.12 4.06
2708 3015 8.688747 TTTTAAATTGATGGTCAAAAAGGCAT 57.311 26.923 0.00 0.00 40.12 4.40
2709 3016 7.989741 TCTTTTAAATTGATGGTCAAAAAGGCA 59.010 29.630 11.57 0.00 40.12 4.75
2710 3017 8.376889 TCTTTTAAATTGATGGTCAAAAAGGC 57.623 30.769 11.57 0.00 40.12 4.35
2716 3023 9.487790 GGAAACATCTTTTAAATTGATGGTCAA 57.512 29.630 23.61 0.00 41.12 3.18
2717 3024 8.869109 AGGAAACATCTTTTAAATTGATGGTCA 58.131 29.630 23.61 0.00 41.12 4.02
2718 3025 9.358872 GAGGAAACATCTTTTAAATTGATGGTC 57.641 33.333 23.61 20.38 41.12 4.02
2719 3026 8.028938 CGAGGAAACATCTTTTAAATTGATGGT 58.971 33.333 23.61 18.94 41.12 3.55
2720 3027 8.243426 TCGAGGAAACATCTTTTAAATTGATGG 58.757 33.333 23.61 13.10 41.12 3.51
2721 3028 9.793252 ATCGAGGAAACATCTTTTAAATTGATG 57.207 29.630 20.69 20.69 42.14 3.07
2722 3029 9.793252 CATCGAGGAAACATCTTTTAAATTGAT 57.207 29.630 0.00 0.00 0.00 2.57
2723 3030 7.754924 GCATCGAGGAAACATCTTTTAAATTGA 59.245 33.333 0.00 0.00 0.00 2.57
2724 3031 7.009540 GGCATCGAGGAAACATCTTTTAAATTG 59.990 37.037 0.00 0.00 0.00 2.32
2725 3032 7.035612 GGCATCGAGGAAACATCTTTTAAATT 58.964 34.615 0.00 0.00 0.00 1.82
2726 3033 6.152661 TGGCATCGAGGAAACATCTTTTAAAT 59.847 34.615 0.00 0.00 0.00 1.40
2727 3034 5.475220 TGGCATCGAGGAAACATCTTTTAAA 59.525 36.000 0.00 0.00 0.00 1.52
2728 3035 5.007034 TGGCATCGAGGAAACATCTTTTAA 58.993 37.500 0.00 0.00 0.00 1.52
2729 3036 4.394920 GTGGCATCGAGGAAACATCTTTTA 59.605 41.667 0.00 0.00 0.00 1.52
2730 3037 3.191371 GTGGCATCGAGGAAACATCTTTT 59.809 43.478 0.00 0.00 0.00 2.27
2731 3038 2.749621 GTGGCATCGAGGAAACATCTTT 59.250 45.455 0.00 0.00 0.00 2.52
2732 3039 2.026822 AGTGGCATCGAGGAAACATCTT 60.027 45.455 0.00 0.00 0.00 2.40
2733 3040 1.556911 AGTGGCATCGAGGAAACATCT 59.443 47.619 0.00 0.00 0.00 2.90
2734 3041 1.936547 GAGTGGCATCGAGGAAACATC 59.063 52.381 0.00 0.00 0.00 3.06
2735 3042 1.278985 TGAGTGGCATCGAGGAAACAT 59.721 47.619 0.00 0.00 0.00 2.71
2736 3043 0.684535 TGAGTGGCATCGAGGAAACA 59.315 50.000 0.00 0.00 0.00 2.83
2737 3044 2.029838 ATGAGTGGCATCGAGGAAAC 57.970 50.000 0.00 0.00 28.85 2.78
2738 3045 2.787473 AATGAGTGGCATCGAGGAAA 57.213 45.000 0.00 0.00 35.78 3.13
2739 3046 2.632377 GAAATGAGTGGCATCGAGGAA 58.368 47.619 0.00 0.00 35.78 3.36
2740 3047 1.471501 CGAAATGAGTGGCATCGAGGA 60.472 52.381 0.00 0.00 35.78 3.71
2741 3048 0.933097 CGAAATGAGTGGCATCGAGG 59.067 55.000 0.00 0.00 35.78 4.63
2742 3049 1.926561 TCGAAATGAGTGGCATCGAG 58.073 50.000 4.65 0.00 34.21 4.04
2743 3050 2.270923 CTTCGAAATGAGTGGCATCGA 58.729 47.619 4.65 4.65 36.53 3.59
2744 3051 2.002586 ACTTCGAAATGAGTGGCATCG 58.997 47.619 0.00 0.00 35.78 3.84
2745 3052 2.029728 CGACTTCGAAATGAGTGGCATC 59.970 50.000 0.00 0.00 43.02 3.91
2746 3053 2.002586 CGACTTCGAAATGAGTGGCAT 58.997 47.619 0.00 0.00 43.02 4.40
2747 3054 1.270094 ACGACTTCGAAATGAGTGGCA 60.270 47.619 5.47 0.00 43.02 4.92
2748 3055 1.126846 CACGACTTCGAAATGAGTGGC 59.873 52.381 5.47 0.00 43.02 5.01
2749 3056 1.126846 GCACGACTTCGAAATGAGTGG 59.873 52.381 18.05 9.24 43.02 4.00
2750 3057 2.061773 AGCACGACTTCGAAATGAGTG 58.938 47.619 5.47 14.44 43.02 3.51
2751 3058 2.440539 AGCACGACTTCGAAATGAGT 57.559 45.000 5.47 0.00 43.02 3.41
2752 3059 2.723010 GCAAGCACGACTTCGAAATGAG 60.723 50.000 5.47 0.00 43.02 2.90
2753 3060 1.194547 GCAAGCACGACTTCGAAATGA 59.805 47.619 5.47 0.00 43.02 2.57
2754 3061 1.069973 TGCAAGCACGACTTCGAAATG 60.070 47.619 5.47 0.00 43.02 2.32
2755 3062 1.225855 TGCAAGCACGACTTCGAAAT 58.774 45.000 5.47 0.00 43.02 2.17
2756 3063 1.069973 CATGCAAGCACGACTTCGAAA 60.070 47.619 5.47 0.00 43.02 3.46
2757 3064 0.512518 CATGCAAGCACGACTTCGAA 59.487 50.000 5.47 0.00 43.02 3.71
2758 3065 1.900585 GCATGCAAGCACGACTTCGA 61.901 55.000 14.21 0.00 43.02 3.71
2759 3066 1.510623 GCATGCAAGCACGACTTCG 60.511 57.895 14.21 0.00 46.33 3.79
2760 3067 1.575922 TGCATGCAAGCACGACTTC 59.424 52.632 20.30 0.00 40.11 3.01
2761 3068 3.748623 TGCATGCAAGCACGACTT 58.251 50.000 20.30 0.00 40.11 3.01
2767 3074 0.393448 AAATGTGGTGCATGCAAGCA 59.607 45.000 24.58 20.64 43.35 3.91
2768 3075 0.793861 CAAATGTGGTGCATGCAAGC 59.206 50.000 24.58 16.32 37.96 4.01
2769 3076 0.793861 GCAAATGTGGTGCATGCAAG 59.206 50.000 24.58 6.16 41.80 4.01
2770 3077 0.106149 TGCAAATGTGGTGCATGCAA 59.894 45.000 24.58 7.19 46.76 4.08
2771 3078 1.746517 TGCAAATGTGGTGCATGCA 59.253 47.368 18.46 18.46 46.76 3.96
2772 3079 4.677407 TGCAAATGTGGTGCATGC 57.323 50.000 11.82 11.82 46.76 4.06
2776 3083 3.037431 TGGTTAATGCAAATGTGGTGC 57.963 42.857 0.00 0.00 42.55 5.01
2777 3084 4.448395 CACTTGGTTAATGCAAATGTGGTG 59.552 41.667 0.00 0.00 0.00 4.17
2778 3085 4.343526 TCACTTGGTTAATGCAAATGTGGT 59.656 37.500 0.00 0.00 0.00 4.16
2779 3086 4.880759 TCACTTGGTTAATGCAAATGTGG 58.119 39.130 0.00 0.00 0.00 4.17
2780 3087 7.424227 AAATCACTTGGTTAATGCAAATGTG 57.576 32.000 0.00 0.00 0.00 3.21
2781 3088 7.498570 ACAAAATCACTTGGTTAATGCAAATGT 59.501 29.630 0.00 0.00 0.00 2.71
2782 3089 7.863666 ACAAAATCACTTGGTTAATGCAAATG 58.136 30.769 0.00 0.00 0.00 2.32
2783 3090 7.933033 AGACAAAATCACTTGGTTAATGCAAAT 59.067 29.630 0.00 0.00 0.00 2.32
2784 3091 7.271511 AGACAAAATCACTTGGTTAATGCAAA 58.728 30.769 0.00 0.00 0.00 3.68
2785 3092 6.815089 AGACAAAATCACTTGGTTAATGCAA 58.185 32.000 0.00 0.00 0.00 4.08
2786 3093 6.403866 AGACAAAATCACTTGGTTAATGCA 57.596 33.333 0.00 0.00 0.00 3.96
2787 3094 5.863935 GGAGACAAAATCACTTGGTTAATGC 59.136 40.000 0.00 0.00 0.00 3.56
2788 3095 6.980593 TGGAGACAAAATCACTTGGTTAATG 58.019 36.000 0.00 0.00 37.44 1.90
2804 3111 0.103390 TCGTGAGCGTTTGGAGACAA 59.897 50.000 0.00 0.00 43.19 3.18
2805 3112 0.103390 TTCGTGAGCGTTTGGAGACA 59.897 50.000 0.00 0.00 39.49 3.41
2806 3113 1.070776 GTTTCGTGAGCGTTTGGAGAC 60.071 52.381 0.00 0.00 39.49 3.36
2807 3114 1.214367 GTTTCGTGAGCGTTTGGAGA 58.786 50.000 0.00 0.00 39.49 3.71
2808 3115 0.934496 TGTTTCGTGAGCGTTTGGAG 59.066 50.000 0.00 0.00 39.49 3.86
2809 3116 1.370609 TTGTTTCGTGAGCGTTTGGA 58.629 45.000 0.00 0.00 39.49 3.53
2810 3117 2.181426 TTTGTTTCGTGAGCGTTTGG 57.819 45.000 0.00 0.00 39.49 3.28
2811 3118 5.331235 GGTTATTTTGTTTCGTGAGCGTTTG 60.331 40.000 0.00 0.00 39.49 2.93
2812 3119 4.736307 GGTTATTTTGTTTCGTGAGCGTTT 59.264 37.500 0.00 0.00 39.49 3.60
2813 3120 4.035909 AGGTTATTTTGTTTCGTGAGCGTT 59.964 37.500 0.00 0.00 39.49 4.84
2814 3121 3.562557 AGGTTATTTTGTTTCGTGAGCGT 59.437 39.130 0.00 0.00 39.49 5.07
2815 3122 4.141855 AGGTTATTTTGTTTCGTGAGCG 57.858 40.909 0.00 0.00 39.92 5.03
2816 3123 6.837992 TCATAGGTTATTTTGTTTCGTGAGC 58.162 36.000 0.00 0.00 0.00 4.26
2817 3124 7.464358 CCTCATAGGTTATTTTGTTTCGTGAG 58.536 38.462 0.00 0.00 0.00 3.51
2818 3125 7.372451 CCTCATAGGTTATTTTGTTTCGTGA 57.628 36.000 0.00 0.00 0.00 4.35
2834 3141 3.389329 AGTCTAATGCCACACCTCATAGG 59.611 47.826 0.00 0.00 42.49 2.57
2835 3142 4.100035 TGAGTCTAATGCCACACCTCATAG 59.900 45.833 0.00 0.00 0.00 2.23
2836 3143 4.030216 TGAGTCTAATGCCACACCTCATA 58.970 43.478 0.00 0.00 0.00 2.15
2837 3144 2.840038 TGAGTCTAATGCCACACCTCAT 59.160 45.455 0.00 0.00 0.00 2.90
2838 3145 2.028112 GTGAGTCTAATGCCACACCTCA 60.028 50.000 0.00 0.00 0.00 3.86
2839 3146 2.028112 TGTGAGTCTAATGCCACACCTC 60.028 50.000 0.00 0.00 34.96 3.85
2840 3147 1.977854 TGTGAGTCTAATGCCACACCT 59.022 47.619 0.00 0.00 34.96 4.00
2841 3148 2.472695 TGTGAGTCTAATGCCACACC 57.527 50.000 0.00 0.00 34.96 4.16
2842 3149 4.829064 TTTTGTGAGTCTAATGCCACAC 57.171 40.909 0.00 0.00 38.99 3.82
2843 3150 6.183360 ACAATTTTTGTGAGTCTAATGCCACA 60.183 34.615 0.00 0.00 43.48 4.17
2844 3151 6.215845 ACAATTTTTGTGAGTCTAATGCCAC 58.784 36.000 0.00 0.00 43.48 5.01
2845 3152 6.403866 ACAATTTTTGTGAGTCTAATGCCA 57.596 33.333 0.00 0.00 43.48 4.92
2858 3165 0.919981 CGCACGCACACAATTTTTGT 59.080 45.000 0.00 0.00 46.75 2.83
2859 3166 0.919981 ACGCACGCACACAATTTTTG 59.080 45.000 0.00 0.00 0.00 2.44
2860 3167 0.919981 CACGCACGCACACAATTTTT 59.080 45.000 0.00 0.00 0.00 1.94
2861 3168 0.179150 ACACGCACGCACACAATTTT 60.179 45.000 0.00 0.00 0.00 1.82
2862 3169 0.865218 CACACGCACGCACACAATTT 60.865 50.000 0.00 0.00 0.00 1.82
2863 3170 1.298264 CACACGCACGCACACAATT 60.298 52.632 0.00 0.00 0.00 2.32
2864 3171 2.327592 CACACGCACGCACACAAT 59.672 55.556 0.00 0.00 0.00 2.71
2865 3172 3.121676 ACACACGCACGCACACAA 61.122 55.556 0.00 0.00 0.00 3.33
2866 3173 3.858989 CACACACGCACGCACACA 61.859 61.111 0.00 0.00 0.00 3.72
2867 3174 3.860125 ACACACACGCACGCACAC 61.860 61.111 0.00 0.00 0.00 3.82
2868 3175 3.858989 CACACACACGCACGCACA 61.859 61.111 0.00 0.00 0.00 4.57
2869 3176 3.089729 TTCACACACACGCACGCAC 62.090 57.895 0.00 0.00 0.00 5.34
2870 3177 2.815647 TTCACACACACGCACGCA 60.816 55.556 0.00 0.00 0.00 5.24
2871 3178 2.350760 GTTCACACACACGCACGC 60.351 61.111 0.00 0.00 0.00 5.34
2872 3179 2.323105 GGTTCACACACACGCACG 59.677 61.111 0.00 0.00 0.00 5.34
2873 3180 2.168503 TCGGTTCACACACACGCAC 61.169 57.895 0.00 0.00 0.00 5.34
2874 3181 2.168503 GTCGGTTCACACACACGCA 61.169 57.895 0.00 0.00 0.00 5.24
2875 3182 2.624264 GTCGGTTCACACACACGC 59.376 61.111 0.00 0.00 0.00 5.34
2876 3183 1.213094 GAGGTCGGTTCACACACACG 61.213 60.000 0.00 0.00 0.00 4.49
2877 3184 0.104304 AGAGGTCGGTTCACACACAC 59.896 55.000 0.00 0.00 0.00 3.82
2878 3185 1.611977 CTAGAGGTCGGTTCACACACA 59.388 52.381 0.00 0.00 0.00 3.72
2879 3186 1.067776 CCTAGAGGTCGGTTCACACAC 60.068 57.143 0.00 0.00 0.00 3.82
2880 3187 1.254026 CCTAGAGGTCGGTTCACACA 58.746 55.000 0.00 0.00 0.00 3.72
2881 3188 0.108756 GCCTAGAGGTCGGTTCACAC 60.109 60.000 0.00 0.00 37.57 3.82
2882 3189 0.251653 AGCCTAGAGGTCGGTTCACA 60.252 55.000 0.00 0.00 37.57 3.58
2883 3190 0.173708 CAGCCTAGAGGTCGGTTCAC 59.826 60.000 0.00 0.00 37.57 3.18
2884 3191 0.970937 CCAGCCTAGAGGTCGGTTCA 60.971 60.000 0.00 0.00 37.57 3.18
2885 3192 1.677637 CCCAGCCTAGAGGTCGGTTC 61.678 65.000 0.00 0.00 37.57 3.62
2886 3193 1.686110 CCCAGCCTAGAGGTCGGTT 60.686 63.158 0.00 0.00 37.57 4.44
2887 3194 2.042843 CCCAGCCTAGAGGTCGGT 60.043 66.667 0.00 0.00 37.57 4.69
2888 3195 1.381327 TTCCCAGCCTAGAGGTCGG 60.381 63.158 0.00 0.00 37.57 4.79
2889 3196 0.684805 AGTTCCCAGCCTAGAGGTCG 60.685 60.000 0.00 0.00 37.57 4.79
2890 3197 0.827368 CAGTTCCCAGCCTAGAGGTC 59.173 60.000 0.00 0.00 37.57 3.85
2891 3198 1.268283 GCAGTTCCCAGCCTAGAGGT 61.268 60.000 0.00 0.00 37.57 3.85
2892 3199 1.267574 TGCAGTTCCCAGCCTAGAGG 61.268 60.000 0.00 0.00 38.53 3.69
2893 3200 0.615331 TTGCAGTTCCCAGCCTAGAG 59.385 55.000 0.00 0.00 0.00 2.43
2894 3201 1.003580 CTTTGCAGTTCCCAGCCTAGA 59.996 52.381 0.00 0.00 0.00 2.43
2895 3202 1.003580 TCTTTGCAGTTCCCAGCCTAG 59.996 52.381 0.00 0.00 0.00 3.02
2896 3203 1.064003 TCTTTGCAGTTCCCAGCCTA 58.936 50.000 0.00 0.00 0.00 3.93
2897 3204 0.407139 ATCTTTGCAGTTCCCAGCCT 59.593 50.000 0.00 0.00 0.00 4.58
2898 3205 0.813821 GATCTTTGCAGTTCCCAGCC 59.186 55.000 0.00 0.00 0.00 4.85
2899 3206 1.538047 TGATCTTTGCAGTTCCCAGC 58.462 50.000 0.00 0.00 0.00 4.85
2900 3207 7.166851 AGATATATGATCTTTGCAGTTCCCAG 58.833 38.462 0.00 0.00 0.00 4.45
2901 3208 7.083062 AGATATATGATCTTTGCAGTTCCCA 57.917 36.000 0.00 0.00 0.00 4.37
2926 3233 9.702253 CAGTCCCTGACCATTAGTAGTATATAT 57.298 37.037 0.00 0.00 32.44 0.86
2927 3234 8.114102 CCAGTCCCTGACCATTAGTAGTATATA 58.886 40.741 0.00 0.00 32.44 0.86
2928 3235 6.954684 CCAGTCCCTGACCATTAGTAGTATAT 59.045 42.308 0.00 0.00 32.44 0.86
2929 3236 6.312529 CCAGTCCCTGACCATTAGTAGTATA 58.687 44.000 0.00 0.00 32.44 1.47
2930 3237 5.148502 CCAGTCCCTGACCATTAGTAGTAT 58.851 45.833 0.00 0.00 32.44 2.12
2931 3238 4.543689 CCAGTCCCTGACCATTAGTAGTA 58.456 47.826 0.00 0.00 32.44 1.82
2932 3239 3.375699 CCAGTCCCTGACCATTAGTAGT 58.624 50.000 0.00 0.00 32.44 2.73
2933 3240 2.700897 CCCAGTCCCTGACCATTAGTAG 59.299 54.545 0.00 0.00 32.44 2.57
2934 3241 2.628559 CCCCAGTCCCTGACCATTAGTA 60.629 54.545 0.00 0.00 32.44 1.82
2935 3242 1.584724 CCCAGTCCCTGACCATTAGT 58.415 55.000 0.00 0.00 32.44 2.24
2936 3243 0.839946 CCCCAGTCCCTGACCATTAG 59.160 60.000 0.00 0.00 32.44 1.73
2937 3244 0.120377 ACCCCAGTCCCTGACCATTA 59.880 55.000 0.00 0.00 32.44 1.90
2938 3245 0.120377 TACCCCAGTCCCTGACCATT 59.880 55.000 0.00 0.00 32.44 3.16
2939 3246 0.120377 TTACCCCAGTCCCTGACCAT 59.880 55.000 0.00 0.00 32.44 3.55
2940 3247 0.120377 ATTACCCCAGTCCCTGACCA 59.880 55.000 0.00 0.00 32.44 4.02
2941 3248 3.022897 ATTACCCCAGTCCCTGACC 57.977 57.895 0.00 0.00 32.44 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.