Multiple sequence alignment - TraesCS5D01G424700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G424700 chr5D 100.000 3985 0 0 1 3985 483721161 483717177 0.000000e+00 7360.0
1 TraesCS5D01G424700 chr5A 87.846 2600 187 61 728 3235 605236024 605233462 0.000000e+00 2931.0
2 TraesCS5D01G424700 chr5A 83.857 700 59 18 3310 3985 605233448 605232779 5.660000e-173 617.0
3 TraesCS5D01G424700 chr5A 89.683 126 13 0 107 232 605236730 605236605 1.150000e-35 161.0
4 TraesCS5D01G424700 chr5A 81.731 104 11 7 272 370 605236420 605236520 3.300000e-11 80.5
5 TraesCS5D01G424700 chr5B 85.752 2667 217 69 676 3235 594925360 594922750 0.000000e+00 2669.0
6 TraesCS5D01G424700 chr5B 84.783 690 56 24 3315 3985 594922754 594922095 0.000000e+00 647.0
7 TraesCS5D01G424700 chr5B 81.366 322 31 19 254 566 594925906 594925605 6.660000e-58 235.0
8 TraesCS5D01G424700 chr7D 85.573 811 96 12 1550 2350 215155419 215154620 0.000000e+00 830.0
9 TraesCS5D01G424700 chr7D 87.013 231 24 4 2457 2685 215154488 215154262 5.110000e-64 255.0
10 TraesCS5D01G424700 chr7D 86.503 163 14 6 3825 3985 289882463 289882307 5.290000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G424700 chr5D 483717177 483721161 3984 True 7360.000000 7360 100.000000 1 3985 1 chr5D.!!$R1 3984
1 TraesCS5D01G424700 chr5A 605232779 605236730 3951 True 1236.333333 2931 87.128667 107 3985 3 chr5A.!!$R1 3878
2 TraesCS5D01G424700 chr5B 594922095 594925906 3811 True 1183.666667 2669 83.967000 254 3985 3 chr5B.!!$R1 3731
3 TraesCS5D01G424700 chr7D 215154262 215155419 1157 True 542.500000 830 86.293000 1550 2685 2 chr7D.!!$R2 1135

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.104855 TGCCGCATGAGGTAGATGAC 59.895 55.0 17.41 0.0 0.00 3.06 F
138 139 0.110373 GGGTTCGTTGATGTTGTCGC 60.110 55.0 0.00 0.0 0.00 5.19 F
858 1367 0.238289 CACTTGGAATTTGTCGCGCT 59.762 50.0 5.56 0.0 0.00 5.92 F
2513 3091 0.250513 GTCCATCAGGAGGCGACTTT 59.749 55.0 0.00 0.0 46.92 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1407 1931 0.316204 AGTGGCAGTGAAGCAATTGC 59.684 50.000 23.05 23.05 42.49 3.56 R
1485 2009 1.592081 GATCAGAGTGAGCGAATGCAC 59.408 52.381 0.00 0.00 46.23 4.57 R
2685 3267 0.398696 TTCCGCTACCTTTCCTGCAA 59.601 50.000 0.00 0.00 0.00 4.08 R
3542 4178 0.040425 CTTTTGTTTCCAGTCCGCGG 60.040 55.000 22.12 22.12 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.299990 AGCTGGTAGATGACATATATTAGACC 57.700 38.462 7.39 1.38 0.00 3.85
26 27 8.119246 AGCTGGTAGATGACATATATTAGACCT 58.881 37.037 7.39 0.00 0.00 3.85
27 28 9.409918 GCTGGTAGATGACATATATTAGACCTA 57.590 37.037 7.39 0.00 0.00 3.08
43 44 7.875327 TTAGACCTATTAAATGCACTTTCCC 57.125 36.000 0.00 0.00 0.00 3.97
44 45 5.826643 AGACCTATTAAATGCACTTTCCCA 58.173 37.500 0.00 0.00 0.00 4.37
45 46 6.435164 AGACCTATTAAATGCACTTTCCCAT 58.565 36.000 0.00 0.00 0.00 4.00
46 47 7.582719 AGACCTATTAAATGCACTTTCCCATA 58.417 34.615 0.00 0.00 0.00 2.74
47 48 8.227507 AGACCTATTAAATGCACTTTCCCATAT 58.772 33.333 0.00 0.00 0.00 1.78
48 49 8.181904 ACCTATTAAATGCACTTTCCCATATG 57.818 34.615 0.00 0.00 0.00 1.78
49 50 8.004215 ACCTATTAAATGCACTTTCCCATATGA 58.996 33.333 3.65 0.00 0.00 2.15
50 51 8.859090 CCTATTAAATGCACTTTCCCATATGAA 58.141 33.333 3.65 0.00 0.00 2.57
51 52 9.683069 CTATTAAATGCACTTTCCCATATGAAC 57.317 33.333 3.65 0.00 0.00 3.18
52 53 5.343307 AAATGCACTTTCCCATATGAACC 57.657 39.130 3.65 0.00 0.00 3.62
53 54 2.364632 TGCACTTTCCCATATGAACCG 58.635 47.619 3.65 0.00 0.00 4.44
54 55 1.676006 GCACTTTCCCATATGAACCGG 59.324 52.381 3.65 0.00 0.00 5.28
55 56 2.682563 GCACTTTCCCATATGAACCGGA 60.683 50.000 9.46 0.00 0.00 5.14
56 57 3.616219 CACTTTCCCATATGAACCGGAA 58.384 45.455 9.46 5.69 32.55 4.30
57 58 3.377172 CACTTTCCCATATGAACCGGAAC 59.623 47.826 9.46 1.34 34.16 3.62
58 59 3.009695 ACTTTCCCATATGAACCGGAACA 59.990 43.478 9.46 8.29 34.16 3.18
59 60 3.943671 TTCCCATATGAACCGGAACAT 57.056 42.857 9.46 15.51 29.40 2.71
60 61 3.207265 TCCCATATGAACCGGAACATG 57.793 47.619 21.40 11.74 0.00 3.21
61 62 2.507886 TCCCATATGAACCGGAACATGT 59.492 45.455 21.40 15.15 0.00 3.21
62 63 3.712218 TCCCATATGAACCGGAACATGTA 59.288 43.478 21.40 8.67 0.00 2.29
63 64 4.164413 TCCCATATGAACCGGAACATGTAA 59.836 41.667 21.40 8.12 0.00 2.41
64 65 4.884744 CCCATATGAACCGGAACATGTAAA 59.115 41.667 21.40 7.85 0.00 2.01
65 66 5.358442 CCCATATGAACCGGAACATGTAAAA 59.642 40.000 21.40 7.57 0.00 1.52
66 67 6.459573 CCCATATGAACCGGAACATGTAAAAG 60.460 42.308 21.40 8.46 0.00 2.27
67 68 6.094881 CCATATGAACCGGAACATGTAAAAGT 59.905 38.462 21.40 0.00 0.00 2.66
68 69 7.362574 CCATATGAACCGGAACATGTAAAAGTT 60.363 37.037 21.40 1.09 0.00 2.66
69 70 5.427036 TGAACCGGAACATGTAAAAGTTC 57.573 39.130 9.46 17.97 42.51 3.01
70 71 4.882427 TGAACCGGAACATGTAAAAGTTCA 59.118 37.500 21.22 21.22 44.46 3.18
71 72 5.357314 TGAACCGGAACATGTAAAAGTTCAA 59.643 36.000 22.14 12.11 44.46 2.69
72 73 5.838531 ACCGGAACATGTAAAAGTTCAAA 57.161 34.783 9.46 0.00 44.46 2.69
73 74 5.827666 ACCGGAACATGTAAAAGTTCAAAG 58.172 37.500 9.46 0.00 44.46 2.77
74 75 5.358725 ACCGGAACATGTAAAAGTTCAAAGT 59.641 36.000 9.46 0.00 44.46 2.66
75 76 6.127563 ACCGGAACATGTAAAAGTTCAAAGTT 60.128 34.615 9.46 0.00 44.46 2.66
76 77 6.198216 CCGGAACATGTAAAAGTTCAAAGTTG 59.802 38.462 0.00 0.00 44.46 3.16
77 78 6.750039 CGGAACATGTAAAAGTTCAAAGTTGT 59.250 34.615 0.00 0.00 44.46 3.32
78 79 7.911205 CGGAACATGTAAAAGTTCAAAGTTGTA 59.089 33.333 0.00 0.00 44.46 2.41
79 80 9.016623 GGAACATGTAAAAGTTCAAAGTTGTAC 57.983 33.333 0.00 4.38 44.46 2.90
80 81 9.562583 GAACATGTAAAAGTTCAAAGTTGTACA 57.437 29.630 13.22 13.22 42.90 2.90
88 89 8.863872 AAAGTTCAAAGTTGTACATATAGGCT 57.136 30.769 0.00 0.00 31.79 4.58
89 90 7.849804 AGTTCAAAGTTGTACATATAGGCTG 57.150 36.000 0.00 0.00 31.79 4.85
90 91 6.316390 AGTTCAAAGTTGTACATATAGGCTGC 59.684 38.462 0.00 0.00 31.79 5.25
91 92 5.123227 TCAAAGTTGTACATATAGGCTGCC 58.877 41.667 11.65 11.65 0.00 4.85
92 93 3.386768 AGTTGTACATATAGGCTGCCG 57.613 47.619 13.96 0.43 0.00 5.69
93 94 1.798813 GTTGTACATATAGGCTGCCGC 59.201 52.381 13.96 0.00 0.00 6.53
94 95 1.044611 TGTACATATAGGCTGCCGCA 58.955 50.000 13.96 5.70 38.10 5.69
95 96 1.623311 TGTACATATAGGCTGCCGCAT 59.377 47.619 13.96 13.07 38.10 4.73
96 97 2.002586 GTACATATAGGCTGCCGCATG 58.997 52.381 21.05 21.05 38.10 4.06
97 98 0.686789 ACATATAGGCTGCCGCATGA 59.313 50.000 26.23 9.79 38.10 3.07
98 99 1.338484 ACATATAGGCTGCCGCATGAG 60.338 52.381 26.23 16.85 38.10 2.90
99 100 0.251354 ATATAGGCTGCCGCATGAGG 59.749 55.000 13.96 11.71 38.10 3.86
100 101 1.121407 TATAGGCTGCCGCATGAGGT 61.121 55.000 17.41 0.00 38.10 3.85
101 102 1.121407 ATAGGCTGCCGCATGAGGTA 61.121 55.000 17.41 11.89 38.10 3.08
102 103 1.748329 TAGGCTGCCGCATGAGGTAG 61.748 60.000 25.59 25.59 45.24 3.18
103 104 2.501128 GCTGCCGCATGAGGTAGA 59.499 61.111 32.06 10.21 45.28 2.59
104 105 1.070445 GCTGCCGCATGAGGTAGAT 59.930 57.895 32.06 0.00 45.28 1.98
105 106 1.226686 GCTGCCGCATGAGGTAGATG 61.227 60.000 32.06 11.68 45.28 2.90
106 107 0.390492 CTGCCGCATGAGGTAGATGA 59.610 55.000 25.72 0.00 45.28 2.92
107 108 0.104855 TGCCGCATGAGGTAGATGAC 59.895 55.000 17.41 0.00 0.00 3.06
108 109 0.104855 GCCGCATGAGGTAGATGACA 59.895 55.000 17.41 0.00 0.00 3.58
109 110 1.871408 GCCGCATGAGGTAGATGACAG 60.871 57.143 17.41 0.00 0.00 3.51
110 111 1.410517 CCGCATGAGGTAGATGACAGT 59.589 52.381 7.42 0.00 0.00 3.55
123 124 3.910627 AGATGACAGTGGTTTCTAGGGTT 59.089 43.478 0.00 0.00 0.00 4.11
125 126 2.036733 TGACAGTGGTTTCTAGGGTTCG 59.963 50.000 0.00 0.00 0.00 3.95
126 127 2.036862 GACAGTGGTTTCTAGGGTTCGT 59.963 50.000 0.00 0.00 0.00 3.85
136 137 3.921677 TCTAGGGTTCGTTGATGTTGTC 58.078 45.455 0.00 0.00 0.00 3.18
138 139 0.110373 GGGTTCGTTGATGTTGTCGC 60.110 55.000 0.00 0.00 0.00 5.19
155 156 2.992689 CCCATGTGGCAGCAGCAA 60.993 61.111 2.65 0.00 44.61 3.91
169 170 4.795268 CAGCAGCAATAATGGCTAAGATG 58.205 43.478 0.00 0.00 40.23 2.90
216 217 8.361592 AGTACAACACAAAGACATACAAGTAC 57.638 34.615 0.00 0.00 0.00 2.73
217 218 8.202137 AGTACAACACAAAGACATACAAGTACT 58.798 33.333 0.00 0.00 34.26 2.73
234 235 8.197988 ACAAGTACTAATTGCTAAAGATTCCG 57.802 34.615 0.00 0.00 0.00 4.30
235 236 6.846325 AGTACTAATTGCTAAAGATTCCGC 57.154 37.500 0.00 0.00 0.00 5.54
236 237 6.346096 AGTACTAATTGCTAAAGATTCCGCA 58.654 36.000 0.00 0.00 0.00 5.69
237 238 6.821665 AGTACTAATTGCTAAAGATTCCGCAA 59.178 34.615 0.00 0.00 45.16 4.85
238 239 6.509418 ACTAATTGCTAAAGATTCCGCAAA 57.491 33.333 0.00 0.00 44.39 3.68
239 240 6.322491 ACTAATTGCTAAAGATTCCGCAAAC 58.678 36.000 0.00 0.00 44.39 2.93
240 241 4.782019 ATTGCTAAAGATTCCGCAAACA 57.218 36.364 0.00 0.00 44.39 2.83
241 242 4.576216 TTGCTAAAGATTCCGCAAACAA 57.424 36.364 0.00 0.00 39.19 2.83
242 243 4.576216 TGCTAAAGATTCCGCAAACAAA 57.424 36.364 0.00 0.00 0.00 2.83
243 244 4.938080 TGCTAAAGATTCCGCAAACAAAA 58.062 34.783 0.00 0.00 0.00 2.44
244 245 5.352284 TGCTAAAGATTCCGCAAACAAAAA 58.648 33.333 0.00 0.00 0.00 1.94
282 283 9.877178 AATAACGGACATGGATAATCTAATCTC 57.123 33.333 0.00 0.00 0.00 2.75
283 284 6.918067 ACGGACATGGATAATCTAATCTCA 57.082 37.500 0.00 0.00 0.00 3.27
285 286 7.382110 ACGGACATGGATAATCTAATCTCAAG 58.618 38.462 0.00 0.00 0.00 3.02
288 289 7.118971 GGACATGGATAATCTAATCTCAAGCAC 59.881 40.741 0.00 0.00 0.00 4.40
317 318 5.333339 GCACCTGCATGAATAGTACATTACG 60.333 44.000 0.00 0.00 41.59 3.18
319 320 6.478673 CACCTGCATGAATAGTACATTACGAA 59.521 38.462 0.00 0.00 0.00 3.85
320 321 7.011016 CACCTGCATGAATAGTACATTACGAAA 59.989 37.037 0.00 0.00 0.00 3.46
321 322 7.551262 ACCTGCATGAATAGTACATTACGAAAA 59.449 33.333 0.00 0.00 0.00 2.29
322 323 8.394877 CCTGCATGAATAGTACATTACGAAAAA 58.605 33.333 0.00 0.00 0.00 1.94
323 324 9.935682 CTGCATGAATAGTACATTACGAAAAAT 57.064 29.630 0.00 0.00 0.00 1.82
367 368 9.643693 AACATCTGAATATTTTTGTGGATGAAC 57.356 29.630 0.00 0.00 35.01 3.18
369 370 9.811995 CATCTGAATATTTTTGTGGATGAACAT 57.188 29.630 0.00 0.00 33.42 2.71
381 387 5.769162 TGTGGATGAACATTTTCTGACATCA 59.231 36.000 0.00 0.00 40.38 3.07
409 416 4.764679 TTTCACCTTGAAATGACATCCG 57.235 40.909 0.00 0.00 41.02 4.18
410 417 3.694043 TCACCTTGAAATGACATCCGA 57.306 42.857 0.00 0.00 0.00 4.55
420 427 3.453070 GACATCCGAGGAGGCCTGC 62.453 68.421 18.04 18.04 40.77 4.85
425 432 2.434843 CCGAGGAGGCCTGCACATA 61.435 63.158 27.56 0.00 31.76 2.29
426 433 1.522092 CGAGGAGGCCTGCACATAA 59.478 57.895 27.56 0.00 31.76 1.90
540 547 5.143376 AGAAATTTTGCAGGATGTTGGAG 57.857 39.130 0.00 0.00 39.31 3.86
620 646 4.433186 TTTGGAATTTAGTGTCCATGCG 57.567 40.909 0.00 0.00 43.42 4.73
647 673 2.194800 TTGCGCTCGAGATTAGAGTG 57.805 50.000 18.75 2.76 45.93 3.51
687 873 4.925054 GCACCTACTAATTAACACGTGACA 59.075 41.667 25.01 6.12 0.00 3.58
746 1252 9.607988 AACAAAAGTATCATTATACCACGATGA 57.392 29.630 0.00 0.00 39.08 2.92
858 1367 0.238289 CACTTGGAATTTGTCGCGCT 59.762 50.000 5.56 0.00 0.00 5.92
895 1404 1.410882 ACTCCTTATCCTCTGAAGCGC 59.589 52.381 0.00 0.00 0.00 5.92
937 1446 0.802607 GCAGGTCTCGAAACCGCTAG 60.803 60.000 14.74 3.63 44.49 3.42
941 1450 0.802607 GTCTCGAAACCGCTAGGCTG 60.803 60.000 0.00 0.00 42.76 4.85
983 1492 4.075793 AGAGAGGCAGCCCCCGTA 62.076 66.667 8.22 0.00 0.00 4.02
1107 1616 3.775654 GCTCGGTGTCTCCAGGGG 61.776 72.222 0.00 0.00 35.57 4.79
1197 1707 4.091549 TCACGGTAATAAGGGAGACACTT 58.908 43.478 0.00 0.00 0.00 3.16
1204 1714 1.428869 AAGGGAGACACTTGCTGACT 58.571 50.000 0.00 0.00 0.00 3.41
1281 1805 2.743636 TGATTCAGGTGGACGAGTTC 57.256 50.000 0.00 0.00 0.00 3.01
1407 1931 0.928229 GCATACCCTCGTAAGCGTTG 59.072 55.000 0.00 0.00 39.49 4.10
1485 2009 3.118629 TCCTGAACATCTGAAATCCCTCG 60.119 47.826 0.00 0.00 0.00 4.63
1649 2175 6.817765 TTCTCTTGTCACCATTGTAAATCC 57.182 37.500 0.00 0.00 0.00 3.01
1658 2184 2.100252 CCATTGTAAATCCTGCAGGCAG 59.900 50.000 28.91 14.21 43.26 4.85
1900 2440 5.071788 TCCCTGACTTGTGTCTGTCTAAATT 59.928 40.000 0.00 0.00 43.29 1.82
1953 2494 5.817296 TCGAACAAGCATGCATCTTAGTAAT 59.183 36.000 21.98 0.00 0.00 1.89
1954 2495 6.983890 TCGAACAAGCATGCATCTTAGTAATA 59.016 34.615 21.98 0.00 0.00 0.98
1955 2496 7.494298 TCGAACAAGCATGCATCTTAGTAATAA 59.506 33.333 21.98 0.00 0.00 1.40
2176 2721 6.094742 ACAACGACAAATATGTGAATGGCATA 59.905 34.615 0.00 0.00 40.74 3.14
2236 2781 2.114616 CTCTACCTTCTGCCACCAGAT 58.885 52.381 0.00 0.00 46.84 2.90
2251 2796 4.637534 CCACCAGATACCAGATCAGTTTTG 59.362 45.833 0.00 0.00 0.00 2.44
2255 2800 5.122869 CCAGATACCAGATCAGTTTTGTGTG 59.877 44.000 0.00 0.00 0.00 3.82
2324 2869 3.493877 CACCGCTGAAGAGATTGATGATC 59.506 47.826 0.00 0.00 34.83 2.92
2335 2880 6.142498 AGAGATTGATGATCTGTTCCTAGGT 58.858 40.000 9.08 0.00 45.17 3.08
2366 2911 0.813184 GCACACCACCCATCAATCTG 59.187 55.000 0.00 0.00 0.00 2.90
2367 2912 1.614051 GCACACCACCCATCAATCTGA 60.614 52.381 0.00 0.00 0.00 3.27
2372 2917 5.595542 CACACCACCCATCAATCTGATAATT 59.404 40.000 0.00 0.00 34.28 1.40
2412 2980 2.280524 TGAAACCTGTCCGTGCCG 60.281 61.111 0.00 0.00 0.00 5.69
2413 2981 2.029964 GAAACCTGTCCGTGCCGA 59.970 61.111 0.00 0.00 0.00 5.54
2430 2998 1.813786 CCGACCCGGCAAAAGAAAATA 59.186 47.619 0.00 0.00 41.17 1.40
2513 3091 0.250513 GTCCATCAGGAGGCGACTTT 59.749 55.000 0.00 0.00 46.92 2.66
2516 3094 0.462759 CATCAGGAGGCGACTTTCCC 60.463 60.000 0.00 0.00 44.43 3.97
2522 3100 2.125766 GAGGCGACTTTCCCCTGGTT 62.126 60.000 0.00 0.00 44.43 3.67
2541 3119 1.622607 TACCAAGGAGGGCCATCACG 61.623 60.000 20.75 6.35 43.89 4.35
2587 3165 3.909995 CCCATCCAGGATCTTGGTATGTA 59.090 47.826 22.17 4.26 41.22 2.29
2599 3179 7.885399 GGATCTTGGTATGTATAAATGGAAGCT 59.115 37.037 0.00 0.00 0.00 3.74
2602 3182 6.633500 TGGTATGTATAAATGGAAGCTTGC 57.367 37.500 11.58 11.58 0.00 4.01
2603 3183 5.534654 TGGTATGTATAAATGGAAGCTTGCC 59.465 40.000 15.98 11.27 0.00 4.52
2608 3188 2.299326 AAATGGAAGCTTGCCACTCT 57.701 45.000 15.98 3.49 38.44 3.24
2610 3190 2.299326 ATGGAAGCTTGCCACTCTTT 57.701 45.000 15.98 0.00 38.44 2.52
2685 3267 0.468029 CTGGTTTGCCTTGGTCACCT 60.468 55.000 0.00 0.00 35.27 4.00
2701 3283 2.471255 CCTTGCAGGAAAGGTAGCG 58.529 57.895 0.00 0.00 41.65 4.26
2719 3301 1.546029 GCGGAAGGCTTGGAGAAAATT 59.454 47.619 3.46 0.00 39.11 1.82
2734 3316 2.507339 AAATTGTTGGCGTTGTGGAG 57.493 45.000 0.00 0.00 0.00 3.86
2760 3342 4.155099 TGGGATAATTTGCAACACTACGTG 59.845 41.667 0.00 0.00 39.75 4.49
2775 3357 5.154932 CACTACGTGAGTTTCTCAACCTAG 58.845 45.833 0.00 3.92 46.40 3.02
2776 3358 5.048921 CACTACGTGAGTTTCTCAACCTAGA 60.049 44.000 0.00 0.00 46.40 2.43
2780 3362 5.047847 CGTGAGTTTCTCAACCTAGACAAA 58.952 41.667 0.88 0.00 42.46 2.83
2781 3363 5.050972 CGTGAGTTTCTCAACCTAGACAAAC 60.051 44.000 0.88 0.00 42.46 2.93
2783 3365 7.208080 GTGAGTTTCTCAACCTAGACAAACTA 58.792 38.462 0.88 0.00 42.46 2.24
2820 3403 8.946085 TCTAGTTATTAACCAGCATGTTTCAAG 58.054 33.333 2.92 0.00 0.00 3.02
2823 3406 8.637986 AGTTATTAACCAGCATGTTTCAAGAAA 58.362 29.630 2.92 0.00 0.00 2.52
2824 3407 8.915654 GTTATTAACCAGCATGTTTCAAGAAAG 58.084 33.333 0.00 0.00 0.00 2.62
2827 3410 5.596836 ACCAGCATGTTTCAAGAAAGAAA 57.403 34.783 0.00 0.00 35.28 2.52
2836 3431 8.538039 CATGTTTCAAGAAAGAAAGAAAAGCTC 58.462 33.333 0.00 0.00 38.11 4.09
2845 3440 9.574516 AGAAAGAAAGAAAAGCTCTTATACCAA 57.425 29.630 0.00 0.00 44.00 3.67
2846 3441 9.833182 GAAAGAAAGAAAAGCTCTTATACCAAG 57.167 33.333 0.00 0.00 44.00 3.61
2849 3444 9.574516 AGAAAGAAAAGCTCTTATACCAAGAAA 57.425 29.630 0.00 0.00 44.00 2.52
2850 3445 9.833182 GAAAGAAAAGCTCTTATACCAAGAAAG 57.167 33.333 0.00 0.00 44.00 2.62
2851 3446 7.384439 AGAAAAGCTCTTATACCAAGAAAGC 57.616 36.000 0.00 0.00 0.00 3.51
2853 3448 6.749923 AAAGCTCTTATACCAAGAAAGCAG 57.250 37.500 0.00 0.00 0.00 4.24
2855 3450 3.313803 GCTCTTATACCAAGAAAGCAGCC 59.686 47.826 0.00 0.00 0.00 4.85
2859 3457 0.605319 TACCAAGAAAGCAGCCCGTG 60.605 55.000 0.00 0.00 0.00 4.94
2862 3460 1.152963 AAGAAAGCAGCCCGTGTGT 60.153 52.632 0.00 0.00 0.00 3.72
2863 3461 1.447317 AAGAAAGCAGCCCGTGTGTG 61.447 55.000 0.00 0.00 0.00 3.82
2865 3463 3.714487 AAAGCAGCCCGTGTGTGGT 62.714 57.895 0.00 0.00 0.00 4.16
2880 3478 0.307760 GTGGTTACACAGTGCAGTGC 59.692 55.000 21.57 8.58 46.90 4.40
2887 3485 1.151668 CACAGTGCAGTGCCTAAGAC 58.848 55.000 21.57 3.27 32.04 3.01
2891 3489 2.161012 CAGTGCAGTGCCTAAGACATTG 59.839 50.000 13.72 0.00 0.00 2.82
2901 3499 4.082625 TGCCTAAGACATTGCAATCTGTTG 60.083 41.667 9.53 1.72 38.39 3.33
2921 3519 1.524621 ATGCAGGCCGTATGCTGTC 60.525 57.895 15.70 0.00 44.17 3.51
2924 3522 1.502163 GCAGGCCGTATGCTGTCATC 61.502 60.000 8.16 0.00 40.59 2.92
2986 3584 6.315144 TCATCGGTGATACCAAACACATAAAG 59.685 38.462 0.00 0.00 38.47 1.85
3019 3617 1.074405 TGCAGAGCAACCATTTCTCCT 59.926 47.619 0.00 0.00 34.76 3.69
3030 3628 2.749076 CCATTTCTCCTGCATTTCGACA 59.251 45.455 0.00 0.00 0.00 4.35
3040 3638 3.264947 TGCATTTCGACAGGAGAATCTG 58.735 45.455 0.00 0.00 40.40 2.90
3041 3639 2.031437 GCATTTCGACAGGAGAATCTGC 59.969 50.000 0.00 0.00 38.26 4.26
3049 3647 0.540923 AGGAGAATCTGCTGCTGGTC 59.459 55.000 2.74 5.11 35.09 4.02
3060 3664 0.883833 CTGCTGGTCGGCTGAAAAAT 59.116 50.000 0.00 0.00 33.89 1.82
3061 3665 0.597568 TGCTGGTCGGCTGAAAAATG 59.402 50.000 0.00 0.00 0.00 2.32
3062 3666 0.733909 GCTGGTCGGCTGAAAAATGC 60.734 55.000 0.00 0.00 0.00 3.56
3063 3667 0.597568 CTGGTCGGCTGAAAAATGCA 59.402 50.000 0.00 0.00 0.00 3.96
3065 3669 1.269517 TGGTCGGCTGAAAAATGCAAC 60.270 47.619 0.00 0.00 0.00 4.17
3066 3670 1.418373 GTCGGCTGAAAAATGCAACC 58.582 50.000 0.00 0.00 0.00 3.77
3069 3673 1.601663 CGGCTGAAAAATGCAACCGAA 60.602 47.619 0.00 0.00 45.20 4.30
3074 3678 4.376311 GCTGAAAAATGCAACCGAATCAAC 60.376 41.667 0.00 0.00 0.00 3.18
3077 3682 0.109319 AATGCAACCGAATCAACCGC 60.109 50.000 0.00 0.00 0.00 5.68
3082 3687 3.483665 CCGAATCAACCGCGCGAA 61.484 61.111 34.63 14.18 0.00 4.70
3132 3752 3.837893 TGGCATGTCCAAACTCCAA 57.162 47.368 6.42 0.00 43.21 3.53
3133 3753 2.079170 TGGCATGTCCAAACTCCAAA 57.921 45.000 6.42 0.00 43.21 3.28
3153 3773 1.558294 AGTTTTCCCCTCCGGATGTAC 59.442 52.381 3.57 0.00 41.63 2.90
3156 3776 0.754217 TTCCCCTCCGGATGTACGAG 60.754 60.000 3.57 0.00 41.63 4.18
3160 3780 2.290514 CCCCTCCGGATGTACGAGTATA 60.291 54.545 3.57 0.00 35.47 1.47
3161 3781 3.618351 CCCTCCGGATGTACGAGTATAT 58.382 50.000 3.57 0.00 35.47 0.86
3162 3782 3.626670 CCCTCCGGATGTACGAGTATATC 59.373 52.174 3.57 10.34 34.27 1.63
3169 3789 6.761099 GGATGTACGAGTATATCCACAGAT 57.239 41.667 24.74 0.00 46.69 2.90
3170 3790 6.556212 GGATGTACGAGTATATCCACAGATG 58.444 44.000 24.74 0.00 46.69 2.90
3171 3791 6.151312 GGATGTACGAGTATATCCACAGATGT 59.849 42.308 24.74 0.00 46.69 3.06
3172 3792 6.313744 TGTACGAGTATATCCACAGATGTG 57.686 41.667 5.97 5.97 45.23 3.21
3173 3793 4.244425 ACGAGTATATCCACAGATGTGC 57.756 45.455 7.46 0.00 44.34 4.57
3174 3794 3.636764 ACGAGTATATCCACAGATGTGCA 59.363 43.478 7.46 0.00 44.34 4.57
3193 3822 1.673665 GACTCTGCAAGCACCCTGG 60.674 63.158 0.00 0.00 0.00 4.45
3201 3830 1.210478 GCAAGCACCCTGGAGAATCTA 59.790 52.381 0.00 0.00 33.73 1.98
3235 3864 3.431673 TGTAAGTTGGCCATGTGATGA 57.568 42.857 6.09 0.00 0.00 2.92
3236 3865 3.346315 TGTAAGTTGGCCATGTGATGAG 58.654 45.455 6.09 0.00 0.00 2.90
3237 3866 2.885135 AAGTTGGCCATGTGATGAGA 57.115 45.000 6.09 0.00 0.00 3.27
3238 3867 2.414994 AGTTGGCCATGTGATGAGAG 57.585 50.000 6.09 0.00 0.00 3.20
3239 3868 1.632409 AGTTGGCCATGTGATGAGAGT 59.368 47.619 6.09 0.00 0.00 3.24
3240 3869 2.040813 AGTTGGCCATGTGATGAGAGTT 59.959 45.455 6.09 0.00 0.00 3.01
3241 3870 2.821969 GTTGGCCATGTGATGAGAGTTT 59.178 45.455 6.09 0.00 0.00 2.66
3242 3871 3.159213 TGGCCATGTGATGAGAGTTTT 57.841 42.857 0.00 0.00 0.00 2.43
3243 3872 2.821378 TGGCCATGTGATGAGAGTTTTG 59.179 45.455 0.00 0.00 0.00 2.44
3244 3873 2.821969 GGCCATGTGATGAGAGTTTTGT 59.178 45.455 0.00 0.00 0.00 2.83
3245 3874 3.366679 GGCCATGTGATGAGAGTTTTGTG 60.367 47.826 0.00 0.00 0.00 3.33
3246 3875 3.503363 GCCATGTGATGAGAGTTTTGTGA 59.497 43.478 0.00 0.00 0.00 3.58
3247 3876 4.379186 GCCATGTGATGAGAGTTTTGTGAG 60.379 45.833 0.00 0.00 0.00 3.51
3248 3877 4.155462 CCATGTGATGAGAGTTTTGTGAGG 59.845 45.833 0.00 0.00 0.00 3.86
3262 3891 1.003580 TGTGAGGGCATCTTCCAGTTC 59.996 52.381 0.00 0.00 0.00 3.01
3263 3892 0.620556 TGAGGGCATCTTCCAGTTCC 59.379 55.000 0.00 0.00 0.00 3.62
3264 3893 0.620556 GAGGGCATCTTCCAGTTCCA 59.379 55.000 0.00 0.00 0.00 3.53
3265 3894 1.004745 GAGGGCATCTTCCAGTTCCAA 59.995 52.381 0.00 0.00 0.00 3.53
3266 3895 1.005215 AGGGCATCTTCCAGTTCCAAG 59.995 52.381 0.00 0.00 0.00 3.61
3267 3896 1.004745 GGGCATCTTCCAGTTCCAAGA 59.995 52.381 0.00 0.00 33.18 3.02
3268 3897 2.363683 GGCATCTTCCAGTTCCAAGAG 58.636 52.381 0.00 0.00 32.16 2.85
3269 3898 2.026822 GGCATCTTCCAGTTCCAAGAGA 60.027 50.000 0.00 0.00 32.16 3.10
3270 3899 3.560025 GGCATCTTCCAGTTCCAAGAGAA 60.560 47.826 0.00 0.00 32.16 2.87
3271 3900 3.688673 GCATCTTCCAGTTCCAAGAGAAG 59.311 47.826 0.00 0.00 34.29 2.85
3272 3901 3.409026 TCTTCCAGTTCCAAGAGAAGC 57.591 47.619 0.00 0.00 34.29 3.86
3273 3902 2.072298 CTTCCAGTTCCAAGAGAAGCG 58.928 52.381 0.00 0.00 34.29 4.68
3274 3903 0.321671 TCCAGTTCCAAGAGAAGCGG 59.678 55.000 0.00 0.00 34.29 5.52
3275 3904 1.301677 CCAGTTCCAAGAGAAGCGGC 61.302 60.000 0.00 0.00 34.29 6.53
3276 3905 0.321122 CAGTTCCAAGAGAAGCGGCT 60.321 55.000 0.00 0.00 34.29 5.52
3277 3906 0.321122 AGTTCCAAGAGAAGCGGCTG 60.321 55.000 1.81 0.00 34.29 4.85
3278 3907 1.003355 TTCCAAGAGAAGCGGCTGG 60.003 57.895 1.81 0.00 0.00 4.85
3279 3908 3.130160 CCAAGAGAAGCGGCTGGC 61.130 66.667 1.81 0.00 44.05 4.85
3280 3909 3.130160 CAAGAGAAGCGGCTGGCC 61.130 66.667 1.81 0.00 45.17 5.36
3281 3910 3.325753 AAGAGAAGCGGCTGGCCT 61.326 61.111 1.81 0.90 45.17 5.19
3282 3911 3.618780 AAGAGAAGCGGCTGGCCTG 62.619 63.158 1.81 4.26 45.17 4.85
3301 3930 3.590824 CCAGCGGGCCAAGTAAAG 58.409 61.111 4.39 0.00 0.00 1.85
3302 3931 1.303317 CCAGCGGGCCAAGTAAAGT 60.303 57.895 4.39 0.00 0.00 2.66
3303 3932 0.035820 CCAGCGGGCCAAGTAAAGTA 60.036 55.000 4.39 0.00 0.00 2.24
3304 3933 1.408266 CCAGCGGGCCAAGTAAAGTAT 60.408 52.381 4.39 0.00 0.00 2.12
3305 3934 1.670811 CAGCGGGCCAAGTAAAGTATG 59.329 52.381 4.39 0.00 0.00 2.39
3306 3935 1.021968 GCGGGCCAAGTAAAGTATGG 58.978 55.000 4.39 0.00 37.29 2.74
3313 3942 0.916809 AAGTAAAGTATGGCCCGGCT 59.083 50.000 9.86 0.00 0.00 5.52
3327 3956 0.890683 CCGGCTTGAGGCATCTTTTT 59.109 50.000 0.00 0.00 44.01 1.94
3365 4001 3.898529 ACGCTTTCACTACTACTGTGAC 58.101 45.455 0.00 0.00 43.13 3.67
3385 4021 4.996113 GCGTATTGCAATGGACCG 57.004 55.556 22.27 17.51 45.45 4.79
3460 4096 4.630505 GCTAACTAAGCCTGTGGACTTAAC 59.369 45.833 0.00 0.00 46.25 2.01
3461 4097 4.976540 AACTAAGCCTGTGGACTTAACT 57.023 40.909 0.00 0.00 0.00 2.24
3462 4098 4.976540 ACTAAGCCTGTGGACTTAACTT 57.023 40.909 0.00 0.00 0.00 2.66
3463 4099 4.642429 ACTAAGCCTGTGGACTTAACTTG 58.358 43.478 0.00 0.00 0.00 3.16
3464 4100 2.568623 AGCCTGTGGACTTAACTTGG 57.431 50.000 0.00 0.00 0.00 3.61
3465 4101 2.054799 AGCCTGTGGACTTAACTTGGA 58.945 47.619 0.00 0.00 0.00 3.53
3472 4108 5.070001 TGTGGACTTAACTTGGATTGGAAG 58.930 41.667 0.00 0.00 0.00 3.46
3490 4126 2.604046 AGCCACGCTTAATCCTACTG 57.396 50.000 0.00 0.00 33.89 2.74
3491 4127 1.831736 AGCCACGCTTAATCCTACTGT 59.168 47.619 0.00 0.00 33.89 3.55
3492 4128 3.028850 AGCCACGCTTAATCCTACTGTA 58.971 45.455 0.00 0.00 33.89 2.74
3493 4129 3.068307 AGCCACGCTTAATCCTACTGTAG 59.932 47.826 7.87 7.87 33.89 2.74
3494 4130 3.067742 GCCACGCTTAATCCTACTGTAGA 59.932 47.826 16.22 3.27 0.00 2.59
3495 4131 4.262079 GCCACGCTTAATCCTACTGTAGAT 60.262 45.833 16.22 5.38 0.00 1.98
3496 4132 5.223382 CCACGCTTAATCCTACTGTAGATG 58.777 45.833 16.22 0.80 0.00 2.90
3497 4133 5.223382 CACGCTTAATCCTACTGTAGATGG 58.777 45.833 16.22 0.87 0.00 3.51
3498 4134 4.894114 ACGCTTAATCCTACTGTAGATGGT 59.106 41.667 16.22 1.70 0.00 3.55
3499 4135 5.009811 ACGCTTAATCCTACTGTAGATGGTC 59.990 44.000 16.22 0.00 0.00 4.02
3500 4136 5.462405 GCTTAATCCTACTGTAGATGGTCG 58.538 45.833 16.22 0.00 0.00 4.79
3501 4137 5.449107 TTAATCCTACTGTAGATGGTCGC 57.551 43.478 16.22 0.00 0.00 5.19
3505 4141 2.553172 CCTACTGTAGATGGTCGCTACC 59.447 54.545 16.22 0.00 46.98 3.18
3507 4143 2.299521 ACTGTAGATGGTCGCTACCTC 58.700 52.381 9.09 4.14 46.91 3.85
3508 4144 1.264557 CTGTAGATGGTCGCTACCTCG 59.735 57.143 9.09 0.00 46.91 4.63
3509 4145 1.307097 GTAGATGGTCGCTACCTCGT 58.693 55.000 9.09 0.00 46.91 4.18
3511 4147 1.183549 AGATGGTCGCTACCTCGTTT 58.816 50.000 9.09 0.00 46.91 3.60
3512 4148 1.549170 AGATGGTCGCTACCTCGTTTT 59.451 47.619 9.09 0.00 46.91 2.43
3514 4150 0.387622 TGGTCGCTACCTCGTTTTCG 60.388 55.000 9.09 0.00 46.91 3.46
3515 4151 1.681025 GGTCGCTACCTCGTTTTCGC 61.681 60.000 0.00 0.00 43.08 4.70
3517 4153 2.450345 CGCTACCTCGTTTTCGCCC 61.450 63.158 0.00 0.00 43.73 6.13
3518 4154 1.375013 GCTACCTCGTTTTCGCCCA 60.375 57.895 0.00 0.00 43.73 5.36
3521 4157 0.393820 TACCTCGTTTTCGCCCAAGT 59.606 50.000 0.00 0.00 43.73 3.16
3522 4158 0.393820 ACCTCGTTTTCGCCCAAGTA 59.606 50.000 0.00 0.00 43.73 2.24
3523 4159 1.202675 ACCTCGTTTTCGCCCAAGTAA 60.203 47.619 0.00 0.00 43.73 2.24
3524 4160 1.463444 CCTCGTTTTCGCCCAAGTAAG 59.537 52.381 0.00 0.00 43.73 2.34
3525 4161 2.409975 CTCGTTTTCGCCCAAGTAAGA 58.590 47.619 0.00 0.00 43.73 2.10
3526 4162 2.409975 TCGTTTTCGCCCAAGTAAGAG 58.590 47.619 0.00 0.00 43.73 2.85
3527 4163 1.136057 CGTTTTCGCCCAAGTAAGAGC 60.136 52.381 0.00 0.00 36.22 4.09
3529 4165 0.322187 TTTCGCCCAAGTAAGAGCCC 60.322 55.000 0.00 0.00 0.00 5.19
3530 4166 1.198759 TTCGCCCAAGTAAGAGCCCT 61.199 55.000 0.00 0.00 0.00 5.19
3531 4167 1.450312 CGCCCAAGTAAGAGCCCTG 60.450 63.158 0.00 0.00 0.00 4.45
3532 4168 1.899437 CGCCCAAGTAAGAGCCCTGA 61.899 60.000 0.00 0.00 0.00 3.86
3533 4169 0.548510 GCCCAAGTAAGAGCCCTGAT 59.451 55.000 0.00 0.00 0.00 2.90
3534 4170 1.064389 GCCCAAGTAAGAGCCCTGATT 60.064 52.381 0.00 0.00 0.00 2.57
3535 4171 2.172717 GCCCAAGTAAGAGCCCTGATTA 59.827 50.000 0.00 0.00 0.00 1.75
3536 4172 3.809905 CCCAAGTAAGAGCCCTGATTAC 58.190 50.000 0.00 0.00 0.00 1.89
3537 4173 3.456277 CCCAAGTAAGAGCCCTGATTACT 59.544 47.826 0.00 0.00 40.55 2.24
3538 4174 4.080299 CCCAAGTAAGAGCCCTGATTACTT 60.080 45.833 4.23 4.23 45.80 2.24
3540 4176 4.762289 AGTAAGAGCCCTGATTACTTGG 57.238 45.455 0.00 0.00 36.58 3.61
3541 4177 4.104831 AGTAAGAGCCCTGATTACTTGGT 58.895 43.478 0.00 0.00 36.58 3.67
3542 4178 3.636153 AAGAGCCCTGATTACTTGGTC 57.364 47.619 0.00 0.00 0.00 4.02
3543 4179 1.840635 AGAGCCCTGATTACTTGGTCC 59.159 52.381 0.00 0.00 0.00 4.46
3544 4180 0.541863 AGCCCTGATTACTTGGTCCG 59.458 55.000 0.00 0.00 0.00 4.79
3545 4181 1.095807 GCCCTGATTACTTGGTCCGC 61.096 60.000 0.00 0.00 0.00 5.54
3546 4182 0.810031 CCCTGATTACTTGGTCCGCG 60.810 60.000 0.00 0.00 0.00 6.46
3547 4183 0.810031 CCTGATTACTTGGTCCGCGG 60.810 60.000 22.12 22.12 0.00 6.46
3548 4184 0.174845 CTGATTACTTGGTCCGCGGA 59.825 55.000 27.28 27.28 0.00 5.54
3549 4185 0.108520 TGATTACTTGGTCCGCGGAC 60.109 55.000 43.30 43.30 43.87 4.79
3550 4186 0.175073 GATTACTTGGTCCGCGGACT 59.825 55.000 46.25 33.48 44.04 3.85
3551 4187 0.108329 ATTACTTGGTCCGCGGACTG 60.108 55.000 46.25 37.08 44.04 3.51
3552 4188 2.162338 TTACTTGGTCCGCGGACTGG 62.162 60.000 46.25 36.63 44.04 4.00
3565 4201 2.293399 GCGGACTGGAAACAAAAGTGAT 59.707 45.455 0.00 0.00 42.06 3.06
3576 4212 3.070018 ACAAAAGTGATCAGCGAAGAGG 58.930 45.455 0.00 0.00 0.00 3.69
3617 4253 6.994221 TCCACCTAAGTTTCAACTCTTCTAG 58.006 40.000 0.00 0.00 38.57 2.43
3618 4254 6.781014 TCCACCTAAGTTTCAACTCTTCTAGA 59.219 38.462 0.00 0.00 38.57 2.43
3619 4255 7.289317 TCCACCTAAGTTTCAACTCTTCTAGAA 59.711 37.037 4.81 4.81 38.57 2.10
3620 4256 7.931948 CCACCTAAGTTTCAACTCTTCTAGAAA 59.068 37.037 6.63 0.00 38.57 2.52
3621 4257 9.326413 CACCTAAGTTTCAACTCTTCTAGAAAA 57.674 33.333 6.63 0.00 38.57 2.29
3622 4258 9.901172 ACCTAAGTTTCAACTCTTCTAGAAAAA 57.099 29.630 6.63 0.33 38.57 1.94
3745 4392 2.125552 CGCGACCAGCCAAGATGA 60.126 61.111 0.00 0.00 44.76 2.92
3746 4393 1.522355 CGCGACCAGCCAAGATGAT 60.522 57.895 0.00 0.00 44.76 2.45
3747 4394 1.769098 CGCGACCAGCCAAGATGATG 61.769 60.000 0.00 0.00 44.76 3.07
3765 4412 0.179121 TGCGATACCTTGCGTACTGG 60.179 55.000 0.00 0.00 34.16 4.00
3780 4430 0.534412 ACTGGTGCTGCTGCTACTAG 59.466 55.000 17.00 19.16 40.48 2.57
3787 4437 1.751924 GCTGCTGCTACTAGTACACCT 59.248 52.381 8.53 0.00 36.03 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.299990 AGGTCTAATATATGTCATCTACCAGC 57.700 38.462 0.00 0.00 0.00 4.85
17 18 9.569122 GGGAAAGTGCATTTAATAGGTCTAATA 57.431 33.333 0.00 0.00 0.00 0.98
18 19 8.058847 TGGGAAAGTGCATTTAATAGGTCTAAT 58.941 33.333 0.00 0.00 0.00 1.73
19 20 7.406916 TGGGAAAGTGCATTTAATAGGTCTAA 58.593 34.615 0.00 0.00 0.00 2.10
20 21 6.964464 TGGGAAAGTGCATTTAATAGGTCTA 58.036 36.000 0.00 0.00 0.00 2.59
21 22 5.826643 TGGGAAAGTGCATTTAATAGGTCT 58.173 37.500 0.00 0.00 0.00 3.85
22 23 6.715347 ATGGGAAAGTGCATTTAATAGGTC 57.285 37.500 0.00 0.00 0.00 3.85
23 24 8.004215 TCATATGGGAAAGTGCATTTAATAGGT 58.996 33.333 2.13 0.00 0.00 3.08
24 25 8.408043 TCATATGGGAAAGTGCATTTAATAGG 57.592 34.615 2.13 0.00 0.00 2.57
25 26 9.683069 GTTCATATGGGAAAGTGCATTTAATAG 57.317 33.333 2.13 0.00 0.00 1.73
26 27 8.637986 GGTTCATATGGGAAAGTGCATTTAATA 58.362 33.333 2.13 0.00 0.00 0.98
27 28 7.500141 GGTTCATATGGGAAAGTGCATTTAAT 58.500 34.615 2.13 0.00 0.00 1.40
28 29 6.405286 CGGTTCATATGGGAAAGTGCATTTAA 60.405 38.462 2.13 0.00 0.00 1.52
29 30 5.067153 CGGTTCATATGGGAAAGTGCATTTA 59.933 40.000 2.13 0.00 0.00 1.40
30 31 4.142182 CGGTTCATATGGGAAAGTGCATTT 60.142 41.667 2.13 0.00 0.00 2.32
31 32 3.381272 CGGTTCATATGGGAAAGTGCATT 59.619 43.478 2.13 0.00 0.00 3.56
32 33 2.951642 CGGTTCATATGGGAAAGTGCAT 59.048 45.455 2.13 0.00 0.00 3.96
33 34 2.364632 CGGTTCATATGGGAAAGTGCA 58.635 47.619 2.13 0.00 0.00 4.57
34 35 1.676006 CCGGTTCATATGGGAAAGTGC 59.324 52.381 2.13 0.00 0.00 4.40
35 36 3.275617 TCCGGTTCATATGGGAAAGTG 57.724 47.619 0.00 0.00 0.00 3.16
36 37 3.009695 TGTTCCGGTTCATATGGGAAAGT 59.990 43.478 11.40 0.00 40.03 2.66
37 38 3.616219 TGTTCCGGTTCATATGGGAAAG 58.384 45.455 11.40 0.00 40.03 2.62
38 39 3.722908 TGTTCCGGTTCATATGGGAAA 57.277 42.857 11.40 2.64 40.03 3.13
39 40 3.053991 ACATGTTCCGGTTCATATGGGAA 60.054 43.478 0.00 5.03 36.26 3.97
40 41 2.507886 ACATGTTCCGGTTCATATGGGA 59.492 45.455 0.00 0.00 0.00 4.37
41 42 2.930950 ACATGTTCCGGTTCATATGGG 58.069 47.619 0.00 0.00 0.00 4.00
42 43 6.094881 ACTTTTACATGTTCCGGTTCATATGG 59.905 38.462 2.30 0.00 0.00 2.74
43 44 7.083875 ACTTTTACATGTTCCGGTTCATATG 57.916 36.000 2.30 3.88 0.00 1.78
44 45 7.392113 TGAACTTTTACATGTTCCGGTTCATAT 59.608 33.333 21.69 0.00 41.10 1.78
45 46 6.711194 TGAACTTTTACATGTTCCGGTTCATA 59.289 34.615 21.69 9.67 41.10 2.15
46 47 5.533154 TGAACTTTTACATGTTCCGGTTCAT 59.467 36.000 21.69 4.75 41.10 2.57
47 48 4.882427 TGAACTTTTACATGTTCCGGTTCA 59.118 37.500 21.69 21.69 41.10 3.18
48 49 5.427036 TGAACTTTTACATGTTCCGGTTC 57.573 39.130 2.30 14.05 41.10 3.62
49 50 5.838531 TTGAACTTTTACATGTTCCGGTT 57.161 34.783 2.30 5.20 41.10 4.44
50 51 5.358725 ACTTTGAACTTTTACATGTTCCGGT 59.641 36.000 2.30 0.00 41.10 5.28
51 52 5.827666 ACTTTGAACTTTTACATGTTCCGG 58.172 37.500 2.30 0.00 41.10 5.14
52 53 6.750039 ACAACTTTGAACTTTTACATGTTCCG 59.250 34.615 2.30 0.00 41.10 4.30
53 54 9.016623 GTACAACTTTGAACTTTTACATGTTCC 57.983 33.333 2.30 0.00 41.10 3.62
54 55 9.562583 TGTACAACTTTGAACTTTTACATGTTC 57.437 29.630 2.30 0.00 41.87 3.18
62 63 9.297037 AGCCTATATGTACAACTTTGAACTTTT 57.703 29.630 0.00 0.00 0.00 2.27
63 64 8.730680 CAGCCTATATGTACAACTTTGAACTTT 58.269 33.333 0.00 0.00 0.00 2.66
64 65 7.148239 GCAGCCTATATGTACAACTTTGAACTT 60.148 37.037 0.00 0.00 0.00 2.66
65 66 6.316390 GCAGCCTATATGTACAACTTTGAACT 59.684 38.462 0.00 0.00 0.00 3.01
66 67 6.458342 GGCAGCCTATATGTACAACTTTGAAC 60.458 42.308 3.29 0.00 0.00 3.18
67 68 5.588648 GGCAGCCTATATGTACAACTTTGAA 59.411 40.000 3.29 0.00 0.00 2.69
68 69 5.123227 GGCAGCCTATATGTACAACTTTGA 58.877 41.667 3.29 0.00 0.00 2.69
69 70 4.024893 CGGCAGCCTATATGTACAACTTTG 60.025 45.833 10.54 0.00 0.00 2.77
70 71 4.127171 CGGCAGCCTATATGTACAACTTT 58.873 43.478 10.54 0.00 0.00 2.66
71 72 3.728845 CGGCAGCCTATATGTACAACTT 58.271 45.455 10.54 0.00 0.00 2.66
72 73 2.548067 GCGGCAGCCTATATGTACAACT 60.548 50.000 10.54 0.00 37.42 3.16
73 74 1.798813 GCGGCAGCCTATATGTACAAC 59.201 52.381 10.54 0.00 37.42 3.32
74 75 1.414550 TGCGGCAGCCTATATGTACAA 59.585 47.619 10.54 0.00 44.33 2.41
75 76 1.044611 TGCGGCAGCCTATATGTACA 58.955 50.000 10.54 0.00 44.33 2.90
76 77 2.002586 CATGCGGCAGCCTATATGTAC 58.997 52.381 10.54 0.00 44.33 2.90
77 78 1.899142 TCATGCGGCAGCCTATATGTA 59.101 47.619 10.54 0.00 44.33 2.29
78 79 0.686789 TCATGCGGCAGCCTATATGT 59.313 50.000 10.54 0.00 44.33 2.29
79 80 1.366679 CTCATGCGGCAGCCTATATG 58.633 55.000 10.54 11.03 44.33 1.78
80 81 0.251354 CCTCATGCGGCAGCCTATAT 59.749 55.000 10.54 0.00 44.33 0.86
81 82 1.121407 ACCTCATGCGGCAGCCTATA 61.121 55.000 10.54 0.00 44.33 1.31
82 83 1.121407 TACCTCATGCGGCAGCCTAT 61.121 55.000 10.54 0.55 44.33 2.57
83 84 1.748329 CTACCTCATGCGGCAGCCTA 61.748 60.000 10.54 0.00 44.33 3.93
84 85 3.083349 TACCTCATGCGGCAGCCT 61.083 61.111 10.54 0.00 44.33 4.58
85 86 2.388890 ATCTACCTCATGCGGCAGCC 62.389 60.000 9.25 0.00 44.33 4.85
86 87 1.070445 ATCTACCTCATGCGGCAGC 59.930 57.895 9.25 0.31 45.41 5.25
87 88 0.390492 TCATCTACCTCATGCGGCAG 59.610 55.000 9.25 0.00 0.00 4.85
88 89 0.104855 GTCATCTACCTCATGCGGCA 59.895 55.000 4.58 4.58 0.00 5.69
89 90 0.104855 TGTCATCTACCTCATGCGGC 59.895 55.000 0.37 0.00 0.00 6.53
90 91 1.410517 ACTGTCATCTACCTCATGCGG 59.589 52.381 0.00 0.00 0.00 5.69
91 92 2.467838 CACTGTCATCTACCTCATGCG 58.532 52.381 0.00 0.00 0.00 4.73
92 93 2.169352 ACCACTGTCATCTACCTCATGC 59.831 50.000 0.00 0.00 0.00 4.06
93 94 4.478206 AACCACTGTCATCTACCTCATG 57.522 45.455 0.00 0.00 0.00 3.07
94 95 4.780021 AGAAACCACTGTCATCTACCTCAT 59.220 41.667 0.00 0.00 0.00 2.90
95 96 4.160329 AGAAACCACTGTCATCTACCTCA 58.840 43.478 0.00 0.00 0.00 3.86
96 97 4.810191 AGAAACCACTGTCATCTACCTC 57.190 45.455 0.00 0.00 0.00 3.85
97 98 4.712337 CCTAGAAACCACTGTCATCTACCT 59.288 45.833 0.00 0.00 0.00 3.08
98 99 4.141914 CCCTAGAAACCACTGTCATCTACC 60.142 50.000 0.00 0.00 0.00 3.18
99 100 4.466726 ACCCTAGAAACCACTGTCATCTAC 59.533 45.833 0.00 0.00 0.00 2.59
100 101 4.684724 ACCCTAGAAACCACTGTCATCTA 58.315 43.478 0.00 0.00 0.00 1.98
101 102 3.521727 ACCCTAGAAACCACTGTCATCT 58.478 45.455 0.00 0.00 0.00 2.90
102 103 3.983044 ACCCTAGAAACCACTGTCATC 57.017 47.619 0.00 0.00 0.00 2.92
103 104 3.306780 CGAACCCTAGAAACCACTGTCAT 60.307 47.826 0.00 0.00 0.00 3.06
104 105 2.036733 CGAACCCTAGAAACCACTGTCA 59.963 50.000 0.00 0.00 0.00 3.58
105 106 2.036862 ACGAACCCTAGAAACCACTGTC 59.963 50.000 0.00 0.00 0.00 3.51
106 107 2.044758 ACGAACCCTAGAAACCACTGT 58.955 47.619 0.00 0.00 0.00 3.55
107 108 2.806244 CAACGAACCCTAGAAACCACTG 59.194 50.000 0.00 0.00 0.00 3.66
108 109 2.701951 TCAACGAACCCTAGAAACCACT 59.298 45.455 0.00 0.00 0.00 4.00
109 110 3.116079 TCAACGAACCCTAGAAACCAC 57.884 47.619 0.00 0.00 0.00 4.16
110 111 3.071892 ACATCAACGAACCCTAGAAACCA 59.928 43.478 0.00 0.00 0.00 3.67
123 124 0.321210 ATGGGCGACAACATCAACGA 60.321 50.000 0.00 0.00 0.00 3.85
125 126 0.881118 ACATGGGCGACAACATCAAC 59.119 50.000 0.00 0.00 0.00 3.18
126 127 0.880441 CACATGGGCGACAACATCAA 59.120 50.000 0.00 0.00 0.00 2.57
138 139 1.038681 TATTGCTGCTGCCACATGGG 61.039 55.000 13.47 0.00 38.71 4.00
150 151 6.569226 GCCTTACATCTTAGCCATTATTGCTG 60.569 42.308 0.73 0.00 39.91 4.41
151 152 5.474876 GCCTTACATCTTAGCCATTATTGCT 59.525 40.000 0.00 0.00 42.81 3.91
155 156 4.997395 CGTGCCTTACATCTTAGCCATTAT 59.003 41.667 0.00 0.00 0.00 1.28
169 170 1.508632 TCAAGTCAAGCGTGCCTTAC 58.491 50.000 0.00 0.00 31.00 2.34
187 188 7.709269 TGTATGTCTTTGTGTTGTACTCTTC 57.291 36.000 0.00 0.00 0.00 2.87
216 217 6.321717 TGTTTGCGGAATCTTTAGCAATTAG 58.678 36.000 2.52 0.00 46.92 1.73
217 218 6.260870 TGTTTGCGGAATCTTTAGCAATTA 57.739 33.333 2.52 0.00 46.92 1.40
245 246 6.938030 TCCATGTCCGTTATTGAGTAGTTTTT 59.062 34.615 0.00 0.00 0.00 1.94
246 247 6.469410 TCCATGTCCGTTATTGAGTAGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
247 248 6.045072 TCCATGTCCGTTATTGAGTAGTTT 57.955 37.500 0.00 0.00 0.00 2.66
248 249 5.670792 TCCATGTCCGTTATTGAGTAGTT 57.329 39.130 0.00 0.00 0.00 2.24
249 250 5.871396 ATCCATGTCCGTTATTGAGTAGT 57.129 39.130 0.00 0.00 0.00 2.73
250 251 8.307483 AGATTATCCATGTCCGTTATTGAGTAG 58.693 37.037 0.00 0.00 0.00 2.57
251 252 8.190326 AGATTATCCATGTCCGTTATTGAGTA 57.810 34.615 0.00 0.00 0.00 2.59
252 253 7.067496 AGATTATCCATGTCCGTTATTGAGT 57.933 36.000 0.00 0.00 0.00 3.41
264 265 7.512130 TGTGCTTGAGATTAGATTATCCATGT 58.488 34.615 0.00 0.00 0.00 3.21
282 283 2.524300 GCAGGTGCATTTGTGCTTG 58.476 52.632 0.00 0.07 41.59 4.01
297 298 9.935682 ATTTTTCGTAATGTACTATTCATGCAG 57.064 29.630 0.00 0.00 0.00 4.41
352 353 7.986320 TGTCAGAAAATGTTCATCCACAAAAAT 59.014 29.630 0.00 0.00 36.09 1.82
357 358 5.769162 TGATGTCAGAAAATGTTCATCCACA 59.231 36.000 0.00 0.00 38.86 4.17
358 359 6.258230 TGATGTCAGAAAATGTTCATCCAC 57.742 37.500 0.00 0.00 38.86 4.02
359 360 6.626402 GCATGATGTCAGAAAATGTTCATCCA 60.626 38.462 0.00 0.00 38.86 3.41
361 362 6.327154 TGCATGATGTCAGAAAATGTTCATC 58.673 36.000 0.00 0.00 39.42 2.92
362 363 6.275494 TGCATGATGTCAGAAAATGTTCAT 57.725 33.333 0.00 0.00 36.09 2.57
363 364 5.708877 TGCATGATGTCAGAAAATGTTCA 57.291 34.783 0.00 0.00 36.09 3.18
364 365 7.591006 ATTTGCATGATGTCAGAAAATGTTC 57.409 32.000 0.00 0.00 0.00 3.18
366 367 7.658167 TGAAATTTGCATGATGTCAGAAAATGT 59.342 29.630 0.00 0.00 0.00 2.71
367 368 7.955324 GTGAAATTTGCATGATGTCAGAAAATG 59.045 33.333 0.00 0.00 0.00 2.32
369 370 6.424509 GGTGAAATTTGCATGATGTCAGAAAA 59.575 34.615 0.00 0.00 0.00 2.29
375 381 5.472148 TCAAGGTGAAATTTGCATGATGTC 58.528 37.500 0.00 0.00 0.00 3.06
400 407 1.074926 AGGCCTCCTCGGATGTCAT 60.075 57.895 0.00 0.00 33.16 3.06
409 416 2.128771 TTTTATGTGCAGGCCTCCTC 57.871 50.000 0.00 0.00 0.00 3.71
410 417 2.603075 TTTTTATGTGCAGGCCTCCT 57.397 45.000 0.00 0.00 0.00 3.69
448 455 4.504097 GTGTGCTCCAAAATGTGTCTTTTC 59.496 41.667 0.00 0.00 0.00 2.29
506 513 9.866655 TCCTGCAAAATTTCTCCACTAATATAT 57.133 29.630 0.00 0.00 0.00 0.86
510 517 6.438425 ACATCCTGCAAAATTTCTCCACTAAT 59.562 34.615 0.00 0.00 0.00 1.73
540 547 7.769272 TTTTTGGATGAACATCAACAAGTTC 57.231 32.000 15.22 0.00 43.31 3.01
608 634 2.267642 GCACCCGCATGGACACTA 59.732 61.111 0.00 0.00 37.49 2.74
609 635 3.952508 TGCACCCGCATGGACACT 61.953 61.111 0.00 0.00 45.36 3.55
620 646 3.386867 CTCGAGCGCAAATGCACCC 62.387 63.158 11.47 0.00 42.21 4.61
631 657 2.353269 AGTGTCACTCTAATCTCGAGCG 59.647 50.000 7.81 0.00 31.71 5.03
635 661 3.544285 GCGAAAGTGTCACTCTAATCTCG 59.456 47.826 5.82 9.00 0.00 4.04
664 690 4.925054 TGTCACGTGTTAATTAGTAGGTGC 59.075 41.667 16.51 11.37 0.00 5.01
687 873 9.106070 AGTTTCAAGAGATAACTGTAAAAACGT 57.894 29.630 0.00 0.00 33.47 3.99
697 883 8.816894 TGTTATCCTCAGTTTCAAGAGATAACT 58.183 33.333 16.51 0.00 36.76 2.24
781 1289 1.214175 TCTGTTCTGCCCACTCCAAAA 59.786 47.619 0.00 0.00 0.00 2.44
782 1290 0.843309 TCTGTTCTGCCCACTCCAAA 59.157 50.000 0.00 0.00 0.00 3.28
858 1367 4.583866 TGTGACAGCGCACGAGCA 62.584 61.111 11.47 0.00 41.63 4.26
941 1450 4.389576 CGTCAGCTTTGCCGGTGC 62.390 66.667 1.90 2.83 38.26 5.01
983 1492 2.786495 ATGGAGACGAGCGGCGAAT 61.786 57.895 12.98 0.00 44.57 3.34
1197 1707 4.069232 CGGGCGGAAGAGTCAGCA 62.069 66.667 1.48 0.00 45.72 4.41
1248 1770 3.005050 CCTGAATCAATGCCGCATAACAT 59.995 43.478 6.22 0.00 0.00 2.71
1281 1805 2.434884 ACCATGCCGCTCTTCACG 60.435 61.111 0.00 0.00 0.00 4.35
1407 1931 0.316204 AGTGGCAGTGAAGCAATTGC 59.684 50.000 23.05 23.05 42.49 3.56
1485 2009 1.592081 GATCAGAGTGAGCGAATGCAC 59.408 52.381 0.00 0.00 46.23 4.57
1649 2175 2.233271 TCTTTTCTTTCCTGCCTGCAG 58.767 47.619 12.17 12.17 43.26 4.41
1658 2184 7.409697 GTTTCAGCCAAAATTCTTTTCTTTCC 58.590 34.615 0.00 0.00 0.00 3.13
1666 2192 4.067192 GCATGGTTTCAGCCAAAATTCTT 58.933 39.130 0.00 0.00 42.48 2.52
1900 2440 6.361433 TCAGGAAACAAAAGGACAAGTGATA 58.639 36.000 0.00 0.00 0.00 2.15
1953 2494 6.567701 GCGACAGTTCCATTTTGATGAACTTA 60.568 38.462 1.62 0.00 34.33 2.24
1954 2495 5.762045 CGACAGTTCCATTTTGATGAACTT 58.238 37.500 1.62 0.00 34.33 2.66
1955 2496 4.320494 GCGACAGTTCCATTTTGATGAACT 60.320 41.667 0.00 0.00 36.65 3.01
2008 2549 6.016360 TGCACTGAACACAAGCAAATAGTTAT 60.016 34.615 0.00 0.00 31.42 1.89
2176 2721 3.500343 CAAAACTGGAATGGAACCCTCT 58.500 45.455 0.00 0.00 0.00 3.69
2236 2781 5.620206 ACATCACACAAAACTGATCTGGTA 58.380 37.500 4.49 0.00 0.00 3.25
2251 2796 5.293079 GCTCCTCTCTTAATGAACATCACAC 59.707 44.000 0.00 0.00 0.00 3.82
2255 2800 5.911752 TCTGCTCCTCTCTTAATGAACATC 58.088 41.667 0.00 0.00 0.00 3.06
2299 2844 1.618343 TCAATCTCTTCAGCGGTGTCA 59.382 47.619 15.22 1.72 0.00 3.58
2324 2869 0.888619 TCTGCGTCACCTAGGAACAG 59.111 55.000 17.98 14.17 0.00 3.16
2377 2922 6.726764 AGGTTTCAGGTTCAGAAGTCTAGTAT 59.273 38.462 0.00 0.00 0.00 2.12
2385 2953 3.142174 GGACAGGTTTCAGGTTCAGAAG 58.858 50.000 0.00 0.00 0.00 2.85
2435 3003 3.763897 GGCAATGGTATCAGTCAAAAGGT 59.236 43.478 0.00 0.00 0.00 3.50
2450 3019 1.547372 CTCCAAACCTTCAGGCAATGG 59.453 52.381 6.01 6.01 39.32 3.16
2516 3094 1.303282 GCCCTCCTTGGTAACCAGG 59.697 63.158 0.00 0.00 33.81 4.45
2522 3100 1.622607 CGTGATGGCCCTCCTTGGTA 61.623 60.000 0.00 0.00 0.00 3.25
2541 3119 6.093633 GGGGTTGTGAAGATAACATCAAGTAC 59.906 42.308 0.00 0.00 0.00 2.73
2587 3165 3.973425 AGAGTGGCAAGCTTCCATTTAT 58.027 40.909 17.14 7.09 35.81 1.40
2599 3179 4.908601 TTAGATCCTCAAAGAGTGGCAA 57.091 40.909 0.00 0.00 0.00 4.52
2602 3182 6.256757 GTCGAATTTAGATCCTCAAAGAGTGG 59.743 42.308 0.00 0.00 0.00 4.00
2603 3183 6.813649 TGTCGAATTTAGATCCTCAAAGAGTG 59.186 38.462 0.00 0.00 0.00 3.51
2608 3188 9.830975 TTATCATGTCGAATTTAGATCCTCAAA 57.169 29.630 0.00 0.00 0.00 2.69
2685 3267 0.398696 TTCCGCTACCTTTCCTGCAA 59.601 50.000 0.00 0.00 0.00 4.08
2701 3283 4.309933 CAACAATTTTCTCCAAGCCTTCC 58.690 43.478 0.00 0.00 0.00 3.46
2719 3301 1.528076 ATGCTCCACAACGCCAACA 60.528 52.632 0.00 0.00 0.00 3.33
2734 3316 4.127566 AGTGTTGCAAATTATCCCATGC 57.872 40.909 0.00 0.00 39.22 4.06
2796 3379 8.856153 TCTTGAAACATGCTGGTTAATAACTA 57.144 30.769 2.96 0.00 0.00 2.24
2801 3384 7.288810 TCTTTCTTGAAACATGCTGGTTAAT 57.711 32.000 0.00 0.00 0.00 1.40
2820 3403 9.833182 CTTGGTATAAGAGCTTTTCTTTCTTTC 57.167 33.333 0.00 0.00 43.68 2.62
2823 3406 9.574516 TTTCTTGGTATAAGAGCTTTTCTTTCT 57.425 29.630 0.00 0.00 43.68 2.52
2824 3407 9.833182 CTTTCTTGGTATAAGAGCTTTTCTTTC 57.167 33.333 0.00 0.00 43.68 2.62
2827 3410 6.942576 TGCTTTCTTGGTATAAGAGCTTTTCT 59.057 34.615 0.00 0.00 37.93 2.52
2836 3431 2.614057 CGGGCTGCTTTCTTGGTATAAG 59.386 50.000 0.00 0.00 0.00 1.73
2840 3435 0.605319 CACGGGCTGCTTTCTTGGTA 60.605 55.000 0.00 0.00 0.00 3.25
2845 3440 1.893808 CACACACGGGCTGCTTTCT 60.894 57.895 0.00 0.00 0.00 2.52
2846 3441 2.639286 CACACACGGGCTGCTTTC 59.361 61.111 0.00 0.00 0.00 2.62
2849 3444 2.813726 TAACCACACACGGGCTGCT 61.814 57.895 0.00 0.00 0.00 4.24
2850 3445 2.281208 TAACCACACACGGGCTGC 60.281 61.111 0.00 0.00 0.00 5.25
2851 3446 1.227704 TGTAACCACACACGGGCTG 60.228 57.895 0.00 0.00 0.00 4.85
2862 3460 0.817634 GGCACTGCACTGTGTAACCA 60.818 55.000 9.86 0.00 39.89 3.67
2863 3461 0.535102 AGGCACTGCACTGTGTAACC 60.535 55.000 9.86 6.87 39.89 2.85
2865 3463 2.367241 TCTTAGGCACTGCACTGTGTAA 59.633 45.455 9.86 0.00 41.52 2.41
2871 3469 2.430465 CAATGTCTTAGGCACTGCACT 58.570 47.619 2.82 0.50 41.52 4.40
2872 3470 1.135575 GCAATGTCTTAGGCACTGCAC 60.136 52.381 15.48 0.00 41.52 4.57
2901 3499 2.903855 AGCATACGGCCTGCATGC 60.904 61.111 19.77 19.77 46.50 4.06
2918 3516 1.445410 CCCTTTCGACGCGATGACA 60.445 57.895 15.93 1.65 35.23 3.58
2921 3519 1.421410 CTTCCCCTTTCGACGCGATG 61.421 60.000 15.93 4.17 35.23 3.84
2924 3522 1.623973 GAACTTCCCCTTTCGACGCG 61.624 60.000 3.53 3.53 0.00 6.01
3019 3617 3.264947 CAGATTCTCCTGTCGAAATGCA 58.735 45.455 0.00 0.00 0.00 3.96
3030 3628 0.540923 GACCAGCAGCAGATTCTCCT 59.459 55.000 0.00 0.00 0.00 3.69
3040 3638 1.795170 TTTTTCAGCCGACCAGCAGC 61.795 55.000 0.00 0.00 34.23 5.25
3041 3639 0.883833 ATTTTTCAGCCGACCAGCAG 59.116 50.000 0.00 0.00 34.23 4.24
3045 3643 1.035923 TTGCATTTTTCAGCCGACCA 58.964 45.000 0.00 0.00 0.00 4.02
3046 3644 1.418373 GTTGCATTTTTCAGCCGACC 58.582 50.000 0.00 0.00 0.00 4.79
3060 3664 2.950673 GCGGTTGATTCGGTTGCA 59.049 55.556 0.00 0.00 0.00 4.08
3061 3665 2.202298 CGCGGTTGATTCGGTTGC 60.202 61.111 0.00 0.00 0.00 4.17
3062 3666 2.202298 GCGCGGTTGATTCGGTTG 60.202 61.111 8.83 0.00 0.00 3.77
3063 3667 3.784412 CGCGCGGTTGATTCGGTT 61.784 61.111 24.84 0.00 0.00 4.44
3065 3669 2.879942 CTTTCGCGCGGTTGATTCGG 62.880 60.000 31.69 6.28 0.00 4.30
3066 3670 1.577616 CTTTCGCGCGGTTGATTCG 60.578 57.895 31.69 6.17 0.00 3.34
3069 3673 1.852067 AAAGCTTTCGCGCGGTTGAT 61.852 50.000 31.69 15.63 42.32 2.57
3094 3699 4.062293 CCACACAGAATTTTACCGACAGA 58.938 43.478 0.00 0.00 0.00 3.41
3127 3747 1.534729 CGGAGGGGAAAACTTTGGAG 58.465 55.000 0.00 0.00 0.00 3.86
3128 3748 3.737702 CGGAGGGGAAAACTTTGGA 57.262 52.632 0.00 0.00 0.00 3.53
3144 3764 3.754850 TGTGGATATACTCGTACATCCGG 59.245 47.826 9.20 0.00 41.00 5.14
3153 3773 4.022849 TCTGCACATCTGTGGATATACTCG 60.023 45.833 11.98 0.00 45.17 4.18
3156 3776 5.010516 AGAGTCTGCACATCTGTGGATATAC 59.989 44.000 11.98 7.87 45.17 1.47
3160 3780 2.093606 CAGAGTCTGCACATCTGTGGAT 60.094 50.000 7.33 0.00 45.17 3.41
3161 3781 1.274447 CAGAGTCTGCACATCTGTGGA 59.726 52.381 7.33 8.30 45.72 4.02
3162 3782 1.723220 CAGAGTCTGCACATCTGTGG 58.277 55.000 7.33 0.00 45.72 4.17
3173 3793 0.954449 CAGGGTGCTTGCAGAGTCTG 60.954 60.000 16.21 16.21 34.12 3.51
3174 3794 1.374190 CAGGGTGCTTGCAGAGTCT 59.626 57.895 0.00 0.00 0.00 3.24
3183 3812 4.228210 TGATTTAGATTCTCCAGGGTGCTT 59.772 41.667 0.00 0.00 0.00 3.91
3189 3818 7.636150 AAACATGTGATTTAGATTCTCCAGG 57.364 36.000 0.00 0.00 0.00 4.45
3201 3830 7.096551 GGCCAACTTACATAAACATGTGATTT 58.903 34.615 0.00 0.00 36.08 2.17
3216 3845 3.609853 TCTCATCACATGGCCAACTTAC 58.390 45.455 10.96 0.00 0.00 2.34
3235 3864 3.416156 GAAGATGCCCTCACAAAACTCT 58.584 45.455 0.00 0.00 0.00 3.24
3236 3865 2.489722 GGAAGATGCCCTCACAAAACTC 59.510 50.000 0.00 0.00 0.00 3.01
3237 3866 2.158475 TGGAAGATGCCCTCACAAAACT 60.158 45.455 0.00 0.00 0.00 2.66
3238 3867 2.229784 CTGGAAGATGCCCTCACAAAAC 59.770 50.000 0.00 0.00 34.07 2.43
3239 3868 2.158475 ACTGGAAGATGCCCTCACAAAA 60.158 45.455 0.00 0.00 37.43 2.44
3240 3869 1.425066 ACTGGAAGATGCCCTCACAAA 59.575 47.619 0.00 0.00 37.43 2.83
3241 3870 1.067295 ACTGGAAGATGCCCTCACAA 58.933 50.000 0.00 0.00 37.43 3.33
3242 3871 1.003580 GAACTGGAAGATGCCCTCACA 59.996 52.381 0.00 0.00 37.43 3.58
3243 3872 1.680249 GGAACTGGAAGATGCCCTCAC 60.680 57.143 0.00 0.00 37.43 3.51
3244 3873 0.620556 GGAACTGGAAGATGCCCTCA 59.379 55.000 0.00 0.00 37.43 3.86
3245 3874 0.620556 TGGAACTGGAAGATGCCCTC 59.379 55.000 0.00 0.00 37.43 4.30
3246 3875 1.005215 CTTGGAACTGGAAGATGCCCT 59.995 52.381 0.00 0.00 37.43 5.19
3247 3876 1.004745 TCTTGGAACTGGAAGATGCCC 59.995 52.381 0.00 0.00 37.43 5.36
3248 3877 2.026822 TCTCTTGGAACTGGAAGATGCC 60.027 50.000 0.00 0.00 37.43 4.40
3262 3891 3.130160 GCCAGCCGCTTCTCTTGG 61.130 66.667 0.00 0.00 0.00 3.61
3263 3892 3.130160 GGCCAGCCGCTTCTCTTG 61.130 66.667 0.00 0.00 37.74 3.02
3264 3893 3.325753 AGGCCAGCCGCTTCTCTT 61.326 61.111 5.01 0.00 41.95 2.85
3265 3894 4.093291 CAGGCCAGCCGCTTCTCT 62.093 66.667 5.01 0.00 41.95 3.10
3284 3913 0.035820 TACTTTACTTGGCCCGCTGG 60.036 55.000 0.00 0.00 0.00 4.85
3285 3914 1.670811 CATACTTTACTTGGCCCGCTG 59.329 52.381 0.00 0.00 0.00 5.18
3286 3915 1.408266 CCATACTTTACTTGGCCCGCT 60.408 52.381 0.00 0.00 0.00 5.52
3287 3916 1.021968 CCATACTTTACTTGGCCCGC 58.978 55.000 0.00 0.00 0.00 6.13
3292 3921 1.675552 CCGGGCCATACTTTACTTGG 58.324 55.000 4.39 0.00 0.00 3.61
3293 3922 1.021968 GCCGGGCCATACTTTACTTG 58.978 55.000 8.12 0.00 0.00 3.16
3294 3923 0.916809 AGCCGGGCCATACTTTACTT 59.083 50.000 17.02 0.00 0.00 2.24
3295 3924 0.916809 AAGCCGGGCCATACTTTACT 59.083 50.000 17.02 0.00 0.00 2.24
3296 3925 1.021968 CAAGCCGGGCCATACTTTAC 58.978 55.000 17.02 0.00 0.00 2.01
3297 3926 0.913205 TCAAGCCGGGCCATACTTTA 59.087 50.000 17.02 0.00 0.00 1.85
3298 3927 0.394352 CTCAAGCCGGGCCATACTTT 60.394 55.000 17.02 0.00 0.00 2.66
3299 3928 1.224592 CTCAAGCCGGGCCATACTT 59.775 57.895 17.02 0.51 0.00 2.24
3300 3929 2.746375 CCTCAAGCCGGGCCATACT 61.746 63.158 17.02 0.00 0.00 2.12
3301 3930 2.203209 CCTCAAGCCGGGCCATAC 60.203 66.667 17.02 0.00 0.00 2.39
3302 3931 4.189580 GCCTCAAGCCGGGCCATA 62.190 66.667 17.02 0.00 42.30 2.74
3307 3936 0.967380 AAAAGATGCCTCAAGCCGGG 60.967 55.000 2.18 0.00 42.71 5.73
3308 3937 0.890683 AAAAAGATGCCTCAAGCCGG 59.109 50.000 0.00 0.00 42.71 6.13
3327 3956 2.565834 AGCGTAGAGGTTTTAGCTGGAA 59.434 45.455 0.00 0.00 33.31 3.53
3328 3957 2.176889 AGCGTAGAGGTTTTAGCTGGA 58.823 47.619 0.00 0.00 33.31 3.86
3329 3958 2.674796 AGCGTAGAGGTTTTAGCTGG 57.325 50.000 0.00 0.00 33.31 4.85
3385 4021 2.262915 CACGGCTGGGTCAGAGAC 59.737 66.667 0.00 0.00 32.44 3.36
3451 4087 4.079253 GCTTCCAATCCAAGTTAAGTCCA 58.921 43.478 0.00 0.00 0.00 4.02
3460 4096 0.962356 AGCGTGGCTTCCAATCCAAG 60.962 55.000 0.00 0.00 33.89 3.61
3461 4097 0.539438 AAGCGTGGCTTCCAATCCAA 60.539 50.000 0.00 0.00 46.77 3.53
3462 4098 0.326595 TAAGCGTGGCTTCCAATCCA 59.673 50.000 6.07 0.00 46.77 3.41
3463 4099 1.459450 TTAAGCGTGGCTTCCAATCC 58.541 50.000 6.07 0.00 46.77 3.01
3464 4100 2.033424 GGATTAAGCGTGGCTTCCAATC 59.967 50.000 6.07 10.81 46.77 2.67
3465 4101 2.024414 GGATTAAGCGTGGCTTCCAAT 58.976 47.619 6.07 2.31 46.77 3.16
3472 4108 2.311124 ACAGTAGGATTAAGCGTGGC 57.689 50.000 0.00 0.00 0.00 5.01
3482 4118 3.231207 AGCGACCATCTACAGTAGGAT 57.769 47.619 7.79 0.00 0.00 3.24
3497 4133 1.681025 GGCGAAAACGAGGTAGCGAC 61.681 60.000 0.00 0.00 34.83 5.19
3498 4134 1.444895 GGCGAAAACGAGGTAGCGA 60.445 57.895 0.00 0.00 34.83 4.93
3499 4135 2.450345 GGGCGAAAACGAGGTAGCG 61.450 63.158 0.00 0.00 37.29 4.26
3500 4136 0.952010 TTGGGCGAAAACGAGGTAGC 60.952 55.000 0.00 0.00 0.00 3.58
3501 4137 1.076332 CTTGGGCGAAAACGAGGTAG 58.924 55.000 0.00 0.00 0.00 3.18
3505 4141 2.409975 TCTTACTTGGGCGAAAACGAG 58.590 47.619 0.00 0.00 0.00 4.18
3507 4143 1.136057 GCTCTTACTTGGGCGAAAACG 60.136 52.381 0.00 0.00 0.00 3.60
3508 4144 1.199327 GGCTCTTACTTGGGCGAAAAC 59.801 52.381 0.00 0.00 0.00 2.43
3509 4145 1.530323 GGCTCTTACTTGGGCGAAAA 58.470 50.000 0.00 0.00 0.00 2.29
3511 4147 1.198759 AGGGCTCTTACTTGGGCGAA 61.199 55.000 0.00 0.00 0.00 4.70
3512 4148 1.612442 AGGGCTCTTACTTGGGCGA 60.612 57.895 0.00 0.00 0.00 5.54
3514 4150 0.548510 ATCAGGGCTCTTACTTGGGC 59.451 55.000 0.00 0.00 0.00 5.36
3515 4151 3.456277 AGTAATCAGGGCTCTTACTTGGG 59.544 47.826 0.00 0.00 33.10 4.12
3518 4154 4.536489 ACCAAGTAATCAGGGCTCTTACTT 59.464 41.667 3.72 3.72 43.12 2.24
3521 4157 3.454812 GGACCAAGTAATCAGGGCTCTTA 59.545 47.826 0.00 0.00 0.00 2.10
3522 4158 2.239907 GGACCAAGTAATCAGGGCTCTT 59.760 50.000 0.00 0.00 0.00 2.85
3523 4159 1.840635 GGACCAAGTAATCAGGGCTCT 59.159 52.381 0.00 0.00 0.00 4.09
3524 4160 1.473434 CGGACCAAGTAATCAGGGCTC 60.473 57.143 0.00 0.00 0.00 4.70
3525 4161 0.541863 CGGACCAAGTAATCAGGGCT 59.458 55.000 0.00 0.00 0.00 5.19
3526 4162 1.095807 GCGGACCAAGTAATCAGGGC 61.096 60.000 0.00 0.00 0.00 5.19
3527 4163 0.810031 CGCGGACCAAGTAATCAGGG 60.810 60.000 0.00 0.00 0.00 4.45
3529 4165 0.174845 TCCGCGGACCAAGTAATCAG 59.825 55.000 27.28 0.00 0.00 2.90
3530 4166 0.108520 GTCCGCGGACCAAGTAATCA 60.109 55.000 41.88 9.02 39.08 2.57
3531 4167 0.175073 AGTCCGCGGACCAAGTAATC 59.825 55.000 45.66 24.27 45.59 1.75
3532 4168 0.108329 CAGTCCGCGGACCAAGTAAT 60.108 55.000 45.66 28.13 45.59 1.89
3533 4169 1.290955 CAGTCCGCGGACCAAGTAA 59.709 57.895 45.66 15.08 45.59 2.24
3534 4170 2.642254 CCAGTCCGCGGACCAAGTA 61.642 63.158 45.66 15.91 45.59 2.24
3535 4171 4.003788 CCAGTCCGCGGACCAAGT 62.004 66.667 45.66 29.93 45.59 3.16
3536 4172 2.725203 TTTCCAGTCCGCGGACCAAG 62.725 60.000 45.66 35.49 45.59 3.61
3537 4173 2.809307 TTTCCAGTCCGCGGACCAA 61.809 57.895 45.66 34.08 45.59 3.67
3538 4174 3.235481 TTTCCAGTCCGCGGACCA 61.235 61.111 45.66 31.04 45.59 4.02
3540 4176 1.161563 TTTGTTTCCAGTCCGCGGAC 61.162 55.000 43.92 43.92 44.86 4.79
3541 4177 0.464013 TTTTGTTTCCAGTCCGCGGA 60.464 50.000 27.28 27.28 0.00 5.54
3542 4178 0.040425 CTTTTGTTTCCAGTCCGCGG 60.040 55.000 22.12 22.12 0.00 6.46
3543 4179 0.661020 ACTTTTGTTTCCAGTCCGCG 59.339 50.000 0.00 0.00 0.00 6.46
3544 4180 1.673920 TCACTTTTGTTTCCAGTCCGC 59.326 47.619 0.00 0.00 0.00 5.54
3545 4181 3.563808 TGATCACTTTTGTTTCCAGTCCG 59.436 43.478 0.00 0.00 0.00 4.79
3546 4182 4.557496 GCTGATCACTTTTGTTTCCAGTCC 60.557 45.833 0.00 0.00 0.00 3.85
3547 4183 4.540824 GCTGATCACTTTTGTTTCCAGTC 58.459 43.478 0.00 0.00 0.00 3.51
3548 4184 3.003689 CGCTGATCACTTTTGTTTCCAGT 59.996 43.478 0.00 0.00 0.00 4.00
3549 4185 3.250762 TCGCTGATCACTTTTGTTTCCAG 59.749 43.478 0.00 0.00 0.00 3.86
3550 4186 3.210227 TCGCTGATCACTTTTGTTTCCA 58.790 40.909 0.00 0.00 0.00 3.53
3551 4187 3.896648 TCGCTGATCACTTTTGTTTCC 57.103 42.857 0.00 0.00 0.00 3.13
3552 4188 5.095691 TCTTCGCTGATCACTTTTGTTTC 57.904 39.130 0.00 0.00 0.00 2.78
3565 4201 1.667830 CGTTTGGCCTCTTCGCTGA 60.668 57.895 3.32 0.00 0.00 4.26
3655 4292 3.146066 TGACCGGTAGTACAACGTTAGT 58.854 45.455 7.34 4.52 0.00 2.24
3745 4392 1.538204 CCAGTACGCAAGGTATCGCAT 60.538 52.381 0.00 0.00 46.39 4.73
3746 4393 0.179121 CCAGTACGCAAGGTATCGCA 60.179 55.000 0.00 0.00 46.39 5.10
3747 4394 0.179119 ACCAGTACGCAAGGTATCGC 60.179 55.000 1.32 0.00 46.39 4.58
3765 4412 2.531206 GTGTACTAGTAGCAGCAGCAC 58.469 52.381 1.87 2.47 45.49 4.40
3780 4430 1.180029 TAGAGCCGTCCAAGGTGTAC 58.820 55.000 0.00 0.00 0.00 2.90
3787 4437 2.093658 GGAACAGAATAGAGCCGTCCAA 60.094 50.000 0.00 0.00 0.00 3.53
3952 4610 2.087009 CGGAGAAACCAGACGACGC 61.087 63.158 0.00 0.00 38.90 5.19
3955 4613 2.654877 GCCGGAGAAACCAGACGA 59.345 61.111 5.05 0.00 38.90 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.