Multiple sequence alignment - TraesCS5D01G424100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G424100 chr5D 100.000 4384 0 0 1 4384 483695983 483700366 0.000000e+00 8096
1 TraesCS5D01G424100 chr5B 90.147 4090 203 74 1 3919 594872364 594876424 0.000000e+00 5136
2 TraesCS5D01G424100 chr5B 90.330 455 27 8 2283 2722 38091714 38092166 8.170000e-162 580
3 TraesCS5D01G424100 chr5B 85.158 539 53 13 1766 2285 38053299 38053829 1.080000e-145 527
4 TraesCS5D01G424100 chr5A 89.377 2438 145 46 1592 3948 605153679 605156083 0.000000e+00 2963
5 TraesCS5D01G424100 chr5A 90.077 1300 69 23 407 1658 605152365 605153652 0.000000e+00 1631
6 TraesCS5D01G424100 chr5A 90.640 406 38 0 991 1396 691671089 691670684 1.390000e-149 540
7 TraesCS5D01G424100 chr5A 88.674 362 30 5 3944 4300 605156114 605156469 8.710000e-117 431
8 TraesCS5D01G424100 chr5A 89.020 255 17 10 1 251 605151838 605152085 5.510000e-79 305
9 TraesCS5D01G424100 chr3B 82.150 1042 159 24 2333 3362 575257098 575258124 0.000000e+00 869
10 TraesCS5D01G424100 chr1B 88.924 641 69 2 2706 3345 544997393 544996754 0.000000e+00 789
11 TraesCS5D01G424100 chr1A 88.924 641 69 2 2706 3345 500563593 500562954 0.000000e+00 789
12 TraesCS5D01G424100 chr1D 88.144 641 74 2 2706 3345 405111107 405110468 0.000000e+00 761
13 TraesCS5D01G424100 chr3D 87.443 661 78 3 2706 3362 438943409 438944068 0.000000e+00 756
14 TraesCS5D01G424100 chr7A 87.500 640 78 2 2706 3344 663531166 663531804 0.000000e+00 737
15 TraesCS5D01G424100 chr7A 92.947 397 28 0 1001 1397 663529035 663529431 2.940000e-161 579
16 TraesCS5D01G424100 chr7D 87.188 640 80 2 2706 3344 573694313 573694951 0.000000e+00 726
17 TraesCS5D01G424100 chr7D 93.199 397 27 0 1001 1397 573692185 573692581 6.320000e-163 584
18 TraesCS5D01G424100 chr4B 91.688 397 33 0 1000 1396 654037733 654037337 6.410000e-153 551
19 TraesCS5D01G424100 chr6A 91.646 395 33 0 1003 1397 115944849 115945243 8.290000e-152 547
20 TraesCS5D01G424100 chr6A 85.305 279 41 0 2335 2613 115946306 115946584 5.550000e-74 289
21 TraesCS5D01G424100 chrUn 91.067 403 36 0 994 1396 126673959 126674361 2.980000e-151 545
22 TraesCS5D01G424100 chr6D 91.436 397 34 0 1001 1397 97012775 97013171 2.980000e-151 545


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G424100 chr5D 483695983 483700366 4383 False 8096.0 8096 100.0000 1 4384 1 chr5D.!!$F1 4383
1 TraesCS5D01G424100 chr5B 594872364 594876424 4060 False 5136.0 5136 90.1470 1 3919 1 chr5B.!!$F3 3918
2 TraesCS5D01G424100 chr5B 38053299 38053829 530 False 527.0 527 85.1580 1766 2285 1 chr5B.!!$F1 519
3 TraesCS5D01G424100 chr5A 605151838 605156469 4631 False 1332.5 2963 89.2870 1 4300 4 chr5A.!!$F1 4299
4 TraesCS5D01G424100 chr3B 575257098 575258124 1026 False 869.0 869 82.1500 2333 3362 1 chr3B.!!$F1 1029
5 TraesCS5D01G424100 chr1B 544996754 544997393 639 True 789.0 789 88.9240 2706 3345 1 chr1B.!!$R1 639
6 TraesCS5D01G424100 chr1A 500562954 500563593 639 True 789.0 789 88.9240 2706 3345 1 chr1A.!!$R1 639
7 TraesCS5D01G424100 chr1D 405110468 405111107 639 True 761.0 761 88.1440 2706 3345 1 chr1D.!!$R1 639
8 TraesCS5D01G424100 chr3D 438943409 438944068 659 False 756.0 756 87.4430 2706 3362 1 chr3D.!!$F1 656
9 TraesCS5D01G424100 chr7A 663529035 663531804 2769 False 658.0 737 90.2235 1001 3344 2 chr7A.!!$F1 2343
10 TraesCS5D01G424100 chr7D 573692185 573694951 2766 False 655.0 726 90.1935 1001 3344 2 chr7D.!!$F1 2343
11 TraesCS5D01G424100 chr6A 115944849 115946584 1735 False 418.0 547 88.4755 1003 2613 2 chr6A.!!$F1 1610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
503 654 1.069765 CACGAATCCATCCCCCGAG 59.930 63.158 0.00 0.00 0.00 4.63 F
1834 2492 0.871592 GATCGTGTGCATGCGCTAGA 60.872 55.000 29.79 26.37 39.64 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2208 3083 0.550914 AACACTCCAAGGGCACAAGA 59.449 50.0 0.00 0.0 0.0 3.02 R
3605 5692 0.036952 CACTCGACAGTTCAGGCCAT 60.037 55.0 5.01 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
219 246 4.065088 TCCTTGTTAAGCTTGCTGTACAG 58.935 43.478 18.93 18.93 0.00 2.74
220 247 3.189287 CCTTGTTAAGCTTGCTGTACAGG 59.811 47.826 23.95 8.99 0.00 4.00
259 286 1.557099 ACTACGATCAGTTCAGGGCA 58.443 50.000 0.00 0.00 0.00 5.36
261 288 3.296854 ACTACGATCAGTTCAGGGCATA 58.703 45.455 0.00 0.00 0.00 3.14
263 290 5.077564 ACTACGATCAGTTCAGGGCATATA 58.922 41.667 0.00 0.00 0.00 0.86
264 291 5.717178 ACTACGATCAGTTCAGGGCATATAT 59.283 40.000 0.00 0.00 0.00 0.86
266 293 6.798427 ACGATCAGTTCAGGGCATATATAT 57.202 37.500 0.00 0.00 0.00 0.86
267 294 7.187824 ACGATCAGTTCAGGGCATATATATT 57.812 36.000 0.00 0.00 0.00 1.28
269 296 6.419116 CGATCAGTTCAGGGCATATATATTCG 59.581 42.308 0.00 0.00 0.00 3.34
270 297 5.977635 TCAGTTCAGGGCATATATATTCGG 58.022 41.667 0.00 0.00 0.00 4.30
272 299 6.384015 TCAGTTCAGGGCATATATATTCGGAT 59.616 38.462 0.00 0.00 0.00 4.18
273 300 7.563556 TCAGTTCAGGGCATATATATTCGGATA 59.436 37.037 0.00 0.00 0.00 2.59
282 309 6.015688 GCATATATATTCGGATAACGGAGGGA 60.016 42.308 0.00 0.00 44.45 4.20
321 464 1.446366 GGACGGTGGATAGGAAGGC 59.554 63.158 0.00 0.00 0.00 4.35
370 517 2.823196 TGCAGTCGTTCAACTGTTTG 57.177 45.000 5.97 0.00 46.77 2.93
373 520 2.538939 GCAGTCGTTCAACTGTTTGACC 60.539 50.000 5.97 0.00 46.77 4.02
396 544 6.659242 ACCATCTTCCGTGAAAATTAGACATT 59.341 34.615 0.00 0.00 0.00 2.71
399 547 8.664798 CATCTTCCGTGAAAATTAGACATTGTA 58.335 33.333 0.00 0.00 0.00 2.41
501 652 1.523711 CACACGAATCCATCCCCCG 60.524 63.158 0.00 0.00 0.00 5.73
502 653 1.687840 ACACGAATCCATCCCCCGA 60.688 57.895 0.00 0.00 0.00 5.14
503 654 1.069765 CACGAATCCATCCCCCGAG 59.930 63.158 0.00 0.00 0.00 4.63
507 660 4.557149 ATCCATCCCCCGAGCCGA 62.557 66.667 0.00 0.00 0.00 5.54
664 834 4.400251 CCTCCCTCCCACCGGACT 62.400 72.222 9.46 0.00 33.32 3.85
738 909 4.500116 GCTCCAGCGACCGAGTCC 62.500 72.222 0.00 0.00 0.00 3.85
739 910 4.180946 CTCCAGCGACCGAGTCCG 62.181 72.222 0.00 0.00 0.00 4.79
789 968 2.042230 CCCCTACCGCCACTAGGT 60.042 66.667 0.00 0.00 45.28 3.08
855 1041 4.814294 CCGAGCCCGAACCCGAAG 62.814 72.222 0.00 0.00 38.22 3.79
1311 1532 1.152567 CAACAACTGGGCCAAGGGA 60.153 57.895 13.11 0.00 0.00 4.20
1432 1653 4.250464 TCTCTTCCGCGTGAATTTATGTT 58.750 39.130 4.92 0.00 31.06 2.71
1438 1659 3.623960 CCGCGTGAATTTATGTTAGGGAA 59.376 43.478 4.92 0.00 0.00 3.97
1487 2019 2.742372 CCGTTCGCCAGGGAGTTG 60.742 66.667 0.00 0.00 31.20 3.16
1557 2095 6.005583 CATTTATGCCTGATTTACATCGCT 57.994 37.500 0.00 0.00 31.08 4.93
1570 2120 6.583912 TTTACATCGCTAGTGCTAATTGTC 57.416 37.500 0.00 0.00 36.97 3.18
1642 2285 7.315142 TGAATTTGATCATTTAAGTGCTGGTC 58.685 34.615 0.00 0.00 0.00 4.02
1698 2351 4.435518 CGTGTCCAATTTGTCCATTACGAG 60.436 45.833 0.00 0.00 0.00 4.18
1720 2373 6.348786 CGAGGATGCTATGTTATCCCAATTTG 60.349 42.308 0.00 0.00 43.12 2.32
1741 2397 3.582647 TGGAACATAAGAGTGGAAGCTGA 59.417 43.478 0.00 0.00 0.00 4.26
1803 2461 5.236047 GTGATTAGTATGCTGGCTTCTTCTG 59.764 44.000 0.00 0.00 0.00 3.02
1804 2462 4.826274 TTAGTATGCTGGCTTCTTCTGT 57.174 40.909 0.00 0.00 0.00 3.41
1834 2492 0.871592 GATCGTGTGCATGCGCTAGA 60.872 55.000 29.79 26.37 39.64 2.43
1848 2506 7.219917 TGCATGCGCTAGACAAAATTAATTTAC 59.780 33.333 14.09 8.69 39.64 2.01
1888 2546 1.137872 AGCTAGCTTCACCAATCTCGG 59.862 52.381 12.68 0.00 0.00 4.63
1908 2566 2.364324 GGTTGTCGGCAGGACTGATATA 59.636 50.000 3.00 0.00 46.24 0.86
1909 2567 3.006967 GGTTGTCGGCAGGACTGATATAT 59.993 47.826 3.00 0.00 46.24 0.86
2044 2726 8.469309 ACAAAATGGAGTCCATATCTAAATGG 57.531 34.615 25.09 9.56 44.40 3.16
2092 2799 9.495572 CTATTTCTTTGGTCATCCCTAGTTATC 57.504 37.037 0.00 0.00 0.00 1.75
2106 2813 6.842280 TCCCTAGTTATCTTGGTGTGCTATTA 59.158 38.462 1.41 0.00 35.38 0.98
2109 2816 8.827677 CCTAGTTATCTTGGTGTGCTATTAAAC 58.172 37.037 0.00 0.00 33.15 2.01
2110 2817 9.378551 CTAGTTATCTTGGTGTGCTATTAAACA 57.621 33.333 0.00 0.00 0.00 2.83
2114 2821 5.321102 TCTTGGTGTGCTATTAAACATGGT 58.679 37.500 0.00 0.00 0.00 3.55
2153 2860 8.546244 CATGTTTGTGTAGCATTACTGATCTAG 58.454 37.037 0.00 0.00 0.00 2.43
2156 2863 6.078202 TGTGTAGCATTACTGATCTAGCTC 57.922 41.667 0.00 0.00 33.83 4.09
2157 2864 5.150683 GTGTAGCATTACTGATCTAGCTCG 58.849 45.833 0.00 0.00 33.83 5.03
2163 2968 2.301577 ACTGATCTAGCTCGTTTGCC 57.698 50.000 0.00 0.00 0.00 4.52
2166 2990 1.291132 GATCTAGCTCGTTTGCCCAC 58.709 55.000 0.00 0.00 0.00 4.61
2190 3014 1.605710 CTCCTGTTTTGTGGAGCACAG 59.394 52.381 0.00 0.00 45.39 3.66
2208 3083 5.104360 AGCACAGGGTGATGTTGATATACTT 60.104 40.000 0.00 0.00 35.23 2.24
2209 3084 5.237344 GCACAGGGTGATGTTGATATACTTC 59.763 44.000 0.00 0.00 35.23 3.01
2215 3090 6.238484 GGGTGATGTTGATATACTTCTTGTGC 60.238 42.308 0.00 0.00 0.00 4.57
2296 3197 0.179121 CATGCTGCATCGCCATTTGT 60.179 50.000 13.10 0.00 0.00 2.83
2321 3222 4.782019 TGTGAATAATGGTGTGGCTTTC 57.218 40.909 0.00 0.00 0.00 2.62
2357 3277 2.833943 AGGATTCCAAGTTTGCCATTCC 59.166 45.455 5.29 0.00 0.00 3.01
2676 4745 8.364142 CCCAAAATTTATGTTCAGTTGGAAGTA 58.636 33.333 0.00 0.00 36.90 2.24
2678 4747 9.410556 CAAAATTTATGTTCAGTTGGAAGTAGG 57.589 33.333 0.00 0.00 35.82 3.18
2702 4771 5.355350 GCACTGATACAGCTTTGGTTCTAAT 59.645 40.000 0.00 0.00 34.37 1.73
3566 5645 0.663269 TAGTGCGTTGCAGTCTGTCG 60.663 55.000 1.81 5.89 41.66 4.35
3572 5651 1.286501 GTTGCAGTCTGTCGTGTTCA 58.713 50.000 0.93 0.00 0.00 3.18
3578 5657 1.341209 AGTCTGTCGTGTTCAGCATCA 59.659 47.619 0.00 0.00 33.48 3.07
3579 5658 2.028658 AGTCTGTCGTGTTCAGCATCAT 60.029 45.455 0.00 0.00 33.48 2.45
3581 5660 3.187227 GTCTGTCGTGTTCAGCATCATTT 59.813 43.478 0.00 0.00 33.48 2.32
3582 5661 3.187022 TCTGTCGTGTTCAGCATCATTTG 59.813 43.478 0.00 0.00 33.48 2.32
3583 5662 2.226200 TGTCGTGTTCAGCATCATTTGG 59.774 45.455 0.00 0.00 0.00 3.28
3585 5664 2.483877 TCGTGTTCAGCATCATTTGGTC 59.516 45.455 0.00 0.00 32.51 4.02
3586 5665 2.226200 CGTGTTCAGCATCATTTGGTCA 59.774 45.455 0.00 0.00 32.51 4.02
3605 5692 0.393944 AGTCGGTCCATAGCTGACGA 60.394 55.000 0.00 0.00 34.26 4.20
3633 5720 0.600557 ACTGTCGAGTGCTCTCCTTG 59.399 55.000 10.08 0.00 37.40 3.61
3634 5721 0.884514 CTGTCGAGTGCTCTCCTTGA 59.115 55.000 10.08 0.00 37.40 3.02
3767 5867 5.010617 ACTTATGTCGGAATGTTTTTGCCTT 59.989 36.000 0.00 0.00 0.00 4.35
3839 5957 7.420800 GTTTCTCATCTTTGTGAATCTTGTGT 58.579 34.615 0.00 0.00 35.81 3.72
3843 5961 4.898829 TCTTTGTGAATCTTGTGTGTGG 57.101 40.909 0.00 0.00 0.00 4.17
3874 5992 2.755650 TCTTCTGCCTCGTTCTTTGTC 58.244 47.619 0.00 0.00 0.00 3.18
3880 5998 2.290367 TGCCTCGTTCTTTGTCAACATG 59.710 45.455 0.00 0.00 0.00 3.21
3881 5999 2.548057 GCCTCGTTCTTTGTCAACATGA 59.452 45.455 0.00 0.00 0.00 3.07
3882 6000 3.003275 GCCTCGTTCTTTGTCAACATGAA 59.997 43.478 0.00 0.00 0.00 2.57
3883 6001 4.320494 GCCTCGTTCTTTGTCAACATGAAT 60.320 41.667 0.00 0.00 0.00 2.57
3884 6002 5.149273 CCTCGTTCTTTGTCAACATGAATG 58.851 41.667 0.00 0.00 32.28 2.67
3889 6017 8.177013 TCGTTCTTTGTCAACATGAATGATATG 58.823 33.333 0.00 0.00 33.76 1.78
3909 6037 4.529219 CGTATGCTCGCCCAGGCA 62.529 66.667 9.78 0.00 42.06 4.75
3911 6039 1.371183 GTATGCTCGCCCAGGCATA 59.629 57.895 9.78 3.90 45.74 3.14
3912 6040 1.371183 TATGCTCGCCCAGGCATAC 59.629 57.895 9.78 0.00 45.74 2.39
3913 6041 1.121407 TATGCTCGCCCAGGCATACT 61.121 55.000 9.78 0.00 45.74 2.12
3914 6042 2.280457 GCTCGCCCAGGCATACTC 60.280 66.667 9.78 0.00 42.06 2.59
3916 6044 1.826024 CTCGCCCAGGCATACTCTT 59.174 57.895 9.78 0.00 42.06 2.85
3917 6045 0.531532 CTCGCCCAGGCATACTCTTG 60.532 60.000 9.78 0.00 42.06 3.02
3918 6046 1.221840 CGCCCAGGCATACTCTTGT 59.778 57.895 9.78 0.00 42.06 3.16
3919 6047 0.464036 CGCCCAGGCATACTCTTGTA 59.536 55.000 9.78 0.00 42.06 2.41
3920 6048 1.539065 CGCCCAGGCATACTCTTGTAG 60.539 57.143 9.78 0.00 42.06 2.74
3921 6049 1.762957 GCCCAGGCATACTCTTGTAGA 59.237 52.381 3.12 0.00 41.49 2.59
3953 6116 2.479566 TTGATCACTCTCTGTTGGGC 57.520 50.000 0.00 0.00 0.00 5.36
3960 6123 0.742281 CTCTCTGTTGGGCCATCGTG 60.742 60.000 7.26 4.00 0.00 4.35
3990 6153 2.025981 TCAGTGAGGATTGTTCCATGGG 60.026 50.000 13.02 0.00 45.30 4.00
3995 6158 2.760650 GAGGATTGTTCCATGGGGTTTC 59.239 50.000 13.02 3.14 45.30 2.78
3996 6159 1.831106 GGATTGTTCCATGGGGTTTCC 59.169 52.381 13.02 8.72 42.12 3.13
4003 6166 0.755327 CCATGGGGTTTCCGGGAATC 60.755 60.000 10.86 9.80 38.76 2.52
4017 6180 1.400494 GGGAATCGGAAACATGGAACG 59.600 52.381 0.00 0.00 0.00 3.95
4020 6183 0.035439 ATCGGAAACATGGAACGGCT 60.035 50.000 0.00 0.00 0.00 5.52
4021 6184 0.609151 TCGGAAACATGGAACGGCTA 59.391 50.000 0.00 0.00 0.00 3.93
4022 6185 1.002201 TCGGAAACATGGAACGGCTAA 59.998 47.619 0.00 0.00 0.00 3.09
4053 6216 4.080356 TCGATGGGATTTCCTTGTTCAGAT 60.080 41.667 0.00 0.00 36.20 2.90
4056 6219 4.335416 TGGGATTTCCTTGTTCAGATGAC 58.665 43.478 0.00 0.00 36.20 3.06
4072 6235 5.700832 TCAGATGACGCTTTTTAGTTGTGAT 59.299 36.000 0.00 0.00 0.00 3.06
4078 6241 6.149308 TGACGCTTTTTAGTTGTGATGATGAT 59.851 34.615 0.00 0.00 0.00 2.45
4080 6243 6.803320 ACGCTTTTTAGTTGTGATGATGATTG 59.197 34.615 0.00 0.00 0.00 2.67
4081 6244 7.022979 CGCTTTTTAGTTGTGATGATGATTGA 58.977 34.615 0.00 0.00 0.00 2.57
4082 6245 7.699391 CGCTTTTTAGTTGTGATGATGATTGAT 59.301 33.333 0.00 0.00 0.00 2.57
4083 6246 8.804743 GCTTTTTAGTTGTGATGATGATTGATG 58.195 33.333 0.00 0.00 0.00 3.07
4099 6262 7.080353 TGATTGATGAATTTAGTGTCTGCTG 57.920 36.000 0.00 0.00 0.00 4.41
4105 6268 5.747565 TGAATTTAGTGTCTGCTGTTTTCG 58.252 37.500 0.00 0.00 0.00 3.46
4109 6272 0.654472 GTGTCTGCTGTTTTCGTGCG 60.654 55.000 0.00 0.00 0.00 5.34
4110 6273 0.808060 TGTCTGCTGTTTTCGTGCGA 60.808 50.000 0.00 0.00 0.00 5.10
4112 6275 0.790207 TCTGCTGTTTTCGTGCGATC 59.210 50.000 0.00 0.00 0.00 3.69
4150 6313 1.135286 CCTCCCTTTTGCTGCGATTTC 60.135 52.381 0.00 0.00 0.00 2.17
4201 6364 4.129380 TGGTGGCTCATTATTCAAGATCG 58.871 43.478 0.00 0.00 0.00 3.69
4208 6371 5.333952 GCTCATTATTCAAGATCGAGCTTGG 60.334 44.000 35.37 21.79 44.14 3.61
4211 6374 3.902881 ATTCAAGATCGAGCTTGGACT 57.097 42.857 35.37 20.96 44.14 3.85
4214 6377 0.610174 AAGATCGAGCTTGGACTGCA 59.390 50.000 16.38 0.00 0.00 4.41
4221 6384 2.797792 CGAGCTTGGACTGCAGATAGAC 60.798 54.545 23.35 5.00 0.00 2.59
4230 6393 3.291584 ACTGCAGATAGACTTCATCGGA 58.708 45.455 23.35 0.00 0.00 4.55
4263 6426 5.650266 ACAAATTGTGGGCTATGTTTCGATA 59.350 36.000 0.00 0.00 0.00 2.92
4267 6430 5.811399 TGTGGGCTATGTTTCGATAAAAG 57.189 39.130 0.00 0.00 0.00 2.27
4274 6442 8.807581 GGGCTATGTTTCGATAAAAGAAAATTG 58.192 33.333 0.00 0.00 39.03 2.32
4287 6455 5.897377 AAGAAAATTGCGGTAATGCTAGT 57.103 34.783 0.00 0.00 35.36 2.57
4300 6468 5.066117 GGTAATGCTAGTTGGGACTTTTAGC 59.934 44.000 0.00 0.00 36.16 3.09
4301 6469 3.780804 TGCTAGTTGGGACTTTTAGCA 57.219 42.857 0.74 0.74 40.75 3.49
4302 6470 4.093472 TGCTAGTTGGGACTTTTAGCAA 57.907 40.909 2.32 0.00 40.32 3.91
4303 6471 3.818773 TGCTAGTTGGGACTTTTAGCAAC 59.181 43.478 2.32 0.00 40.32 4.17
4304 6472 3.190744 GCTAGTTGGGACTTTTAGCAACC 59.809 47.826 0.00 0.00 35.83 3.77
4305 6473 3.595190 AGTTGGGACTTTTAGCAACCT 57.405 42.857 0.00 0.00 29.87 3.50
4306 6474 3.222603 AGTTGGGACTTTTAGCAACCTG 58.777 45.455 0.00 0.00 29.87 4.00
4307 6475 1.616159 TGGGACTTTTAGCAACCTGC 58.384 50.000 0.00 0.00 45.46 4.85
4308 6476 0.888619 GGGACTTTTAGCAACCTGCC 59.111 55.000 0.00 0.00 46.52 4.85
4309 6477 1.547901 GGGACTTTTAGCAACCTGCCT 60.548 52.381 0.00 0.00 46.52 4.75
4310 6478 1.813178 GGACTTTTAGCAACCTGCCTC 59.187 52.381 0.00 0.00 46.52 4.70
4311 6479 1.464997 GACTTTTAGCAACCTGCCTCG 59.535 52.381 0.00 0.00 46.52 4.63
4312 6480 1.071699 ACTTTTAGCAACCTGCCTCGA 59.928 47.619 0.00 0.00 46.52 4.04
4313 6481 1.464997 CTTTTAGCAACCTGCCTCGAC 59.535 52.381 0.00 0.00 46.52 4.20
4314 6482 0.394938 TTTAGCAACCTGCCTCGACA 59.605 50.000 0.00 0.00 46.52 4.35
4315 6483 0.320421 TTAGCAACCTGCCTCGACAC 60.320 55.000 0.00 0.00 46.52 3.67
4316 6484 1.185618 TAGCAACCTGCCTCGACACT 61.186 55.000 0.00 0.00 46.52 3.55
4317 6485 2.029844 GCAACCTGCCTCGACACTC 61.030 63.158 0.00 0.00 37.42 3.51
4318 6486 1.367471 CAACCTGCCTCGACACTCA 59.633 57.895 0.00 0.00 0.00 3.41
4319 6487 0.946221 CAACCTGCCTCGACACTCAC 60.946 60.000 0.00 0.00 0.00 3.51
4320 6488 2.100879 AACCTGCCTCGACACTCACC 62.101 60.000 0.00 0.00 0.00 4.02
4321 6489 2.126307 CTGCCTCGACACTCACCG 60.126 66.667 0.00 0.00 0.00 4.94
4322 6490 4.357947 TGCCTCGACACTCACCGC 62.358 66.667 0.00 0.00 0.00 5.68
4323 6491 4.357947 GCCTCGACACTCACCGCA 62.358 66.667 0.00 0.00 0.00 5.69
4324 6492 2.126307 CCTCGACACTCACCGCAG 60.126 66.667 0.00 0.00 0.00 5.18
4337 6505 3.114616 CGCAGGGTCGCAACAGAG 61.115 66.667 0.00 0.00 0.00 3.35
4338 6506 2.343758 GCAGGGTCGCAACAGAGA 59.656 61.111 0.00 0.00 0.00 3.10
4339 6507 2.029844 GCAGGGTCGCAACAGAGAC 61.030 63.158 0.00 0.00 36.70 3.36
4343 6511 4.580835 GTCGCAACAGAGACCCTC 57.419 61.111 0.00 0.00 0.00 4.30
4344 6512 1.444553 GTCGCAACAGAGACCCTCG 60.445 63.158 0.00 0.00 35.36 4.63
4345 6513 2.125912 CGCAACAGAGACCCTCGG 60.126 66.667 0.00 0.00 35.36 4.63
4346 6514 2.266055 GCAACAGAGACCCTCGGG 59.734 66.667 0.00 0.00 42.03 5.14
4347 6515 2.266055 CAACAGAGACCCTCGGGC 59.734 66.667 0.82 0.00 39.32 6.13
4348 6516 2.120718 AACAGAGACCCTCGGGCT 59.879 61.111 0.82 0.08 39.32 5.19
4349 6517 1.985116 AACAGAGACCCTCGGGCTC 60.985 63.158 5.31 5.31 39.32 4.70
4350 6518 3.522731 CAGAGACCCTCGGGCTCG 61.523 72.222 0.00 0.00 40.66 5.03
4351 6519 4.049817 AGAGACCCTCGGGCTCGT 62.050 66.667 5.57 0.00 40.66 4.18
4352 6520 3.827898 GAGACCCTCGGGCTCGTG 61.828 72.222 5.57 2.51 39.32 4.35
4367 6535 3.414700 GTGCGGCGGTTCAGTCAG 61.415 66.667 9.78 0.00 0.00 3.51
4368 6536 3.611674 TGCGGCGGTTCAGTCAGA 61.612 61.111 9.78 0.00 0.00 3.27
4369 6537 3.112709 GCGGCGGTTCAGTCAGAC 61.113 66.667 9.78 0.00 0.00 3.51
4370 6538 2.805353 CGGCGGTTCAGTCAGACG 60.805 66.667 0.00 0.00 0.00 4.18
4371 6539 2.432628 GGCGGTTCAGTCAGACGG 60.433 66.667 0.00 0.00 0.00 4.79
4372 6540 2.432628 GCGGTTCAGTCAGACGGG 60.433 66.667 0.42 0.00 0.00 5.28
4373 6541 2.927580 GCGGTTCAGTCAGACGGGA 61.928 63.158 0.42 0.00 0.00 5.14
4374 6542 1.890894 CGGTTCAGTCAGACGGGAT 59.109 57.895 0.42 0.00 0.00 3.85
4375 6543 0.179134 CGGTTCAGTCAGACGGGATC 60.179 60.000 0.42 0.00 0.00 3.36
4376 6544 1.187087 GGTTCAGTCAGACGGGATCT 58.813 55.000 0.42 0.00 38.66 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 117 5.745312 ATCCAATCAGTGTACAGTTCTGA 57.255 39.130 14.84 14.84 41.43 3.27
112 122 4.292186 AGCAATCCAATCAGTGTACAGT 57.708 40.909 0.00 0.00 0.00 3.55
219 246 1.298859 CCTACAAGTTGGTGCGCTCC 61.299 60.000 21.41 21.41 0.00 4.70
220 247 0.602905 ACCTACAAGTTGGTGCGCTC 60.603 55.000 9.73 4.47 37.32 5.03
259 286 7.230913 CAGTCCCTCCGTTATCCGAATATATAT 59.769 40.741 0.00 0.00 39.56 0.86
261 288 5.360144 CAGTCCCTCCGTTATCCGAATATAT 59.640 44.000 0.00 0.00 39.56 0.86
263 290 3.510360 CAGTCCCTCCGTTATCCGAATAT 59.490 47.826 0.00 0.00 39.56 1.28
264 291 2.889045 CAGTCCCTCCGTTATCCGAATA 59.111 50.000 0.00 0.00 39.56 1.75
266 293 1.108776 CAGTCCCTCCGTTATCCGAA 58.891 55.000 0.00 0.00 39.56 4.30
267 294 0.033796 ACAGTCCCTCCGTTATCCGA 60.034 55.000 0.00 0.00 39.56 4.55
269 296 3.345508 AAAACAGTCCCTCCGTTATCC 57.654 47.619 0.00 0.00 0.00 2.59
321 464 7.926674 TGCCATATGTACCATTTCATCTATG 57.073 36.000 1.24 0.00 0.00 2.23
344 487 4.457810 CAGTTGAACGACTGCAAACTATG 58.542 43.478 8.92 0.00 40.43 2.23
345 488 4.732285 CAGTTGAACGACTGCAAACTAT 57.268 40.909 8.92 0.00 40.43 2.12
370 517 5.642063 TGTCTAATTTTCACGGAAGATGGTC 59.358 40.000 0.00 0.00 0.00 4.02
373 520 7.530010 ACAATGTCTAATTTTCACGGAAGATG 58.470 34.615 0.00 0.00 0.00 2.90
467 618 3.147595 TGGATGGGGACGAGAGCG 61.148 66.667 0.00 0.00 44.79 5.03
722 893 4.180946 CGGACTCGGTCGCTGGAG 62.181 72.222 0.00 0.00 32.65 3.86
875 1061 2.663852 CGGGCCTTTATACCGCGG 60.664 66.667 26.86 26.86 41.23 6.46
879 1065 2.424601 GTGTTTTCCGGGCCTTTATACC 59.575 50.000 0.84 0.00 0.00 2.73
1212 1433 2.509336 CGCACCGAGTCCATGGTC 60.509 66.667 12.58 6.20 35.96 4.02
1311 1532 4.065281 GCGCCCTCGGTGTAGTGT 62.065 66.667 0.00 0.00 35.34 3.55
1432 1653 1.957177 CGCTAGCTCATCAGTTCCCTA 59.043 52.381 13.93 0.00 0.00 3.53
1438 1659 4.582656 AGATCTAAACGCTAGCTCATCAGT 59.417 41.667 13.93 0.00 0.00 3.41
1557 2095 8.360390 AGATCAATACATCGACAATTAGCACTA 58.640 33.333 0.00 0.00 0.00 2.74
1642 2285 5.096169 CGTACTAGACTTGGATCAACAGTG 58.904 45.833 0.00 0.00 0.00 3.66
1698 2351 5.774690 TCCAAATTGGGATAACATAGCATCC 59.225 40.000 12.67 0.00 38.32 3.51
1720 2373 4.207891 TCAGCTTCCACTCTTATGTTCC 57.792 45.455 0.00 0.00 0.00 3.62
1741 2397 8.011290 ACAGTAACAGGACAACCTATATCCTAT 58.989 37.037 0.00 0.00 45.94 2.57
1803 2461 2.608090 GCACACGATCCCTTAAAGCTAC 59.392 50.000 0.00 0.00 0.00 3.58
1804 2462 2.235155 TGCACACGATCCCTTAAAGCTA 59.765 45.455 0.00 0.00 0.00 3.32
1848 2506 4.826556 GCTAGGTGCTTATCCAGAATAGG 58.173 47.826 0.00 0.00 38.95 2.57
1888 2546 2.604046 ATATCAGTCCTGCCGACAAC 57.396 50.000 4.08 0.00 44.66 3.32
1931 2589 2.269978 GCCTCAAGCAAGCCAATCA 58.730 52.632 0.00 0.00 42.97 2.57
2067 2749 9.225682 AGATAACTAGGGATGACCAAAGAAATA 57.774 33.333 0.00 0.00 43.89 1.40
2071 2776 6.126768 CCAAGATAACTAGGGATGACCAAAGA 60.127 42.308 0.00 0.00 43.89 2.52
2092 2799 5.643379 ACCATGTTTAATAGCACACCAAG 57.357 39.130 0.00 0.00 0.00 3.61
2114 2821 2.041081 ACAAACATGCTACTTGGGCCTA 59.959 45.455 4.53 0.00 0.00 3.93
2153 2860 2.130073 GAGTTGGTGGGCAAACGAGC 62.130 60.000 0.00 0.00 33.81 5.03
2156 2863 1.528309 AGGAGTTGGTGGGCAAACG 60.528 57.895 0.00 0.00 33.81 3.60
2157 2864 0.755327 ACAGGAGTTGGTGGGCAAAC 60.755 55.000 0.00 0.00 0.00 2.93
2163 2968 2.869233 CACAAAACAGGAGTTGGTGG 57.131 50.000 0.00 0.00 38.85 4.61
2190 3014 6.238484 GCACAAGAAGTATATCAACATCACCC 60.238 42.308 0.00 0.00 0.00 4.61
2208 3083 0.550914 AACACTCCAAGGGCACAAGA 59.449 50.000 0.00 0.00 0.00 3.02
2209 3084 0.670162 CAACACTCCAAGGGCACAAG 59.330 55.000 0.00 0.00 0.00 3.16
2215 3090 0.896940 ATGCAGCAACACTCCAAGGG 60.897 55.000 0.00 0.00 0.00 3.95
2289 3190 8.871862 CACACCATTATTCACAAATACAAATGG 58.128 33.333 9.11 9.11 40.87 3.16
2296 3197 6.849085 AAGCCACACCATTATTCACAAATA 57.151 33.333 0.00 0.00 0.00 1.40
2321 3222 4.766891 TGGAATCCTGTAAAGGAAGCAAAG 59.233 41.667 5.52 0.00 41.90 2.77
2357 3277 1.277580 ATCCAGTGCCTCCTCCCAAG 61.278 60.000 0.00 0.00 0.00 3.61
2585 3505 0.482887 AAGGGGTGGCAAGCTTTAGT 59.517 50.000 0.00 0.00 0.00 2.24
2676 4745 1.352352 ACCAAAGCTGTATCAGTGCCT 59.648 47.619 0.00 0.00 33.43 4.75
2678 4747 3.077359 AGAACCAAAGCTGTATCAGTGC 58.923 45.455 0.00 0.00 33.43 4.40
2702 4771 3.146066 GTTCAGGTCACCAACTGCATTA 58.854 45.455 0.00 0.00 34.76 1.90
3396 5465 1.002888 CATATAGCTGGGGTGGAGCAG 59.997 57.143 0.00 0.00 39.05 4.24
3397 5466 1.059098 CATATAGCTGGGGTGGAGCA 58.941 55.000 0.00 0.00 39.05 4.26
3398 5467 1.002544 GACATATAGCTGGGGTGGAGC 59.997 57.143 0.00 0.00 36.65 4.70
3400 5469 1.729586 GGACATATAGCTGGGGTGGA 58.270 55.000 0.00 0.00 0.00 4.02
3404 5479 1.553690 CGGGGGACATATAGCTGGGG 61.554 65.000 0.00 0.00 0.00 4.96
3473 5548 1.172812 GCCACAGGAGGAAACCACAC 61.173 60.000 0.00 0.00 0.00 3.82
3566 5645 3.254166 ACTGACCAAATGATGCTGAACAC 59.746 43.478 0.00 0.00 0.00 3.32
3572 5651 1.003580 ACCGACTGACCAAATGATGCT 59.996 47.619 0.00 0.00 0.00 3.79
3578 5657 2.420129 GCTATGGACCGACTGACCAAAT 60.420 50.000 0.00 0.00 37.24 2.32
3579 5658 1.066430 GCTATGGACCGACTGACCAAA 60.066 52.381 0.00 0.00 37.24 3.28
3581 5660 0.324368 AGCTATGGACCGACTGACCA 60.324 55.000 0.00 0.00 38.09 4.02
3582 5661 0.103208 CAGCTATGGACCGACTGACC 59.897 60.000 0.00 0.00 0.00 4.02
3583 5662 1.103803 TCAGCTATGGACCGACTGAC 58.896 55.000 0.00 0.00 32.65 3.51
3585 5664 0.248661 CGTCAGCTATGGACCGACTG 60.249 60.000 0.00 0.00 31.55 3.51
3586 5665 0.393944 TCGTCAGCTATGGACCGACT 60.394 55.000 0.00 0.00 31.55 4.18
3605 5692 0.036952 CACTCGACAGTTCAGGCCAT 60.037 55.000 5.01 0.00 0.00 4.40
3633 5720 0.731417 TACAAGGCGACGACTAGCTC 59.269 55.000 2.15 0.00 0.00 4.09
3634 5721 1.132643 CTTACAAGGCGACGACTAGCT 59.867 52.381 2.15 0.00 0.00 3.32
3636 5723 2.915738 ACTTACAAGGCGACGACTAG 57.084 50.000 2.15 0.00 0.00 2.57
3637 5724 2.816087 AGAACTTACAAGGCGACGACTA 59.184 45.455 2.15 0.00 0.00 2.59
3638 5725 1.612463 AGAACTTACAAGGCGACGACT 59.388 47.619 0.00 0.00 0.00 4.18
3795 5912 1.523758 CCACTGCTGGTACCAAGAAC 58.476 55.000 17.11 6.50 32.03 3.01
3855 5973 2.483876 TGACAAAGAACGAGGCAGAAG 58.516 47.619 0.00 0.00 0.00 2.85
3856 5974 2.612212 GTTGACAAAGAACGAGGCAGAA 59.388 45.455 0.00 0.00 0.00 3.02
3857 5975 2.210116 GTTGACAAAGAACGAGGCAGA 58.790 47.619 0.00 0.00 0.00 4.26
3858 5976 1.939934 TGTTGACAAAGAACGAGGCAG 59.060 47.619 0.00 0.00 0.00 4.85
3859 5977 2.031258 TGTTGACAAAGAACGAGGCA 57.969 45.000 0.00 0.00 0.00 4.75
3874 5992 5.566395 GCATACGCACATATCATTCATGTTG 59.434 40.000 0.00 0.00 34.39 3.33
3880 5998 4.236755 CGAGCATACGCACATATCATTC 57.763 45.455 0.00 0.00 42.27 2.67
3935 6063 0.615331 GGCCCAACAGAGAGTGATCA 59.385 55.000 0.00 0.00 0.00 2.92
3953 6116 1.078918 TGAAGCTCTGCCACGATGG 60.079 57.895 0.00 0.00 41.55 3.51
3960 6123 0.540923 ATCCTCACTGAAGCTCTGCC 59.459 55.000 0.00 0.00 0.00 4.85
3996 6159 1.400494 GTTCCATGTTTCCGATTCCCG 59.600 52.381 0.00 0.00 38.18 5.14
4003 6166 1.129811 GTTAGCCGTTCCATGTTTCCG 59.870 52.381 0.00 0.00 0.00 4.30
4008 6171 3.007614 AGTTACAGTTAGCCGTTCCATGT 59.992 43.478 0.00 0.00 0.00 3.21
4017 6180 2.429610 TCCCATCGAGTTACAGTTAGCC 59.570 50.000 0.00 0.00 0.00 3.93
4020 6183 5.424252 AGGAAATCCCATCGAGTTACAGTTA 59.576 40.000 0.00 0.00 31.42 2.24
4021 6184 4.225267 AGGAAATCCCATCGAGTTACAGTT 59.775 41.667 0.00 0.00 31.42 3.16
4022 6185 3.775316 AGGAAATCCCATCGAGTTACAGT 59.225 43.478 0.00 0.00 31.42 3.55
4053 6216 5.468409 TCATCATCACAACTAAAAAGCGTCA 59.532 36.000 0.00 0.00 0.00 4.35
4056 6219 7.022979 TCAATCATCATCACAACTAAAAAGCG 58.977 34.615 0.00 0.00 0.00 4.68
4072 6235 7.555195 AGCAGACACTAAATTCATCAATCATCA 59.445 33.333 0.00 0.00 0.00 3.07
4078 6241 6.882610 AACAGCAGACACTAAATTCATCAA 57.117 33.333 0.00 0.00 0.00 2.57
4080 6243 6.521133 CGAAAACAGCAGACACTAAATTCATC 59.479 38.462 0.00 0.00 0.00 2.92
4081 6244 6.017109 ACGAAAACAGCAGACACTAAATTCAT 60.017 34.615 0.00 0.00 0.00 2.57
4082 6245 5.295787 ACGAAAACAGCAGACACTAAATTCA 59.704 36.000 0.00 0.00 0.00 2.57
4083 6246 5.621228 CACGAAAACAGCAGACACTAAATTC 59.379 40.000 0.00 0.00 0.00 2.17
4084 6247 5.510671 CACGAAAACAGCAGACACTAAATT 58.489 37.500 0.00 0.00 0.00 1.82
4085 6248 4.554723 GCACGAAAACAGCAGACACTAAAT 60.555 41.667 0.00 0.00 0.00 1.40
4099 6262 0.996462 TCCATCGATCGCACGAAAAC 59.004 50.000 11.09 0.00 45.16 2.43
4105 6268 1.337167 TGGATGATCCATCGATCGCAC 60.337 52.381 10.75 0.00 46.89 5.34
4150 6313 0.232816 GTGTTTTGCTGGCAAATGCG 59.767 50.000 19.27 0.00 44.14 4.73
4161 6324 5.331098 CCACCAAAAGAATTTGTGTTTTGC 58.669 37.500 3.81 0.00 44.97 3.68
4170 6333 7.678837 TGAATAATGAGCCACCAAAAGAATTT 58.321 30.769 0.00 0.00 42.41 1.82
4201 6364 2.430332 AGTCTATCTGCAGTCCAAGCTC 59.570 50.000 14.67 4.54 0.00 4.09
4208 6371 3.316588 TCCGATGAAGTCTATCTGCAGTC 59.683 47.826 14.67 2.21 34.82 3.51
4211 6374 3.555966 TCTCCGATGAAGTCTATCTGCA 58.444 45.455 0.00 0.00 35.96 4.41
4214 6377 4.447138 ACCTCTCCGATGAAGTCTATCT 57.553 45.455 0.00 0.00 0.00 1.98
4221 6384 1.550524 TGTCCAACCTCTCCGATGAAG 59.449 52.381 0.00 0.00 0.00 3.02
4230 6393 2.597455 CCCACAATTTGTCCAACCTCT 58.403 47.619 0.00 0.00 0.00 3.69
4263 6426 6.687604 ACTAGCATTACCGCAATTTTCTTTT 58.312 32.000 0.00 0.00 0.00 2.27
4267 6430 4.798387 CCAACTAGCATTACCGCAATTTTC 59.202 41.667 0.00 0.00 0.00 2.29
4274 6442 1.134491 AGTCCCAACTAGCATTACCGC 60.134 52.381 0.00 0.00 32.59 5.68
4287 6455 1.960689 GCAGGTTGCTAAAAGTCCCAA 59.039 47.619 0.00 0.00 40.96 4.12
4300 6468 0.946221 GTGAGTGTCGAGGCAGGTTG 60.946 60.000 0.00 0.00 0.00 3.77
4301 6469 1.367840 GTGAGTGTCGAGGCAGGTT 59.632 57.895 0.00 0.00 0.00 3.50
4302 6470 2.574955 GGTGAGTGTCGAGGCAGGT 61.575 63.158 0.00 0.00 0.00 4.00
4303 6471 2.262915 GGTGAGTGTCGAGGCAGG 59.737 66.667 0.00 0.00 0.00 4.85
4304 6472 2.126307 CGGTGAGTGTCGAGGCAG 60.126 66.667 0.00 0.00 0.00 4.85
4305 6473 4.357947 GCGGTGAGTGTCGAGGCA 62.358 66.667 0.00 0.00 0.00 4.75
4306 6474 4.357947 TGCGGTGAGTGTCGAGGC 62.358 66.667 0.00 0.00 0.00 4.70
4307 6475 2.126307 CTGCGGTGAGTGTCGAGG 60.126 66.667 0.00 0.00 0.00 4.63
4308 6476 2.126307 CCTGCGGTGAGTGTCGAG 60.126 66.667 0.00 0.00 0.00 4.04
4309 6477 3.680786 CCCTGCGGTGAGTGTCGA 61.681 66.667 0.00 0.00 0.00 4.20
4310 6478 3.916392 GACCCTGCGGTGAGTGTCG 62.916 68.421 0.00 0.00 44.88 4.35
4311 6479 2.048127 GACCCTGCGGTGAGTGTC 60.048 66.667 0.00 0.00 44.88 3.67
4312 6480 3.991051 CGACCCTGCGGTGAGTGT 61.991 66.667 0.00 0.00 44.88 3.55
4315 6483 4.680237 TTGCGACCCTGCGGTGAG 62.680 66.667 0.00 0.00 44.88 3.51
4316 6484 4.980805 GTTGCGACCCTGCGGTGA 62.981 66.667 0.00 0.00 44.88 4.02
4319 6487 4.680237 TCTGTTGCGACCCTGCGG 62.680 66.667 0.45 0.00 37.81 5.69
4320 6488 3.114616 CTCTGTTGCGACCCTGCG 61.115 66.667 0.45 0.00 37.81 5.18
4321 6489 2.029844 GTCTCTGTTGCGACCCTGC 61.030 63.158 0.45 0.00 0.00 4.85
4322 6490 1.374758 GGTCTCTGTTGCGACCCTG 60.375 63.158 0.45 0.00 41.03 4.45
4323 6491 3.060866 GGTCTCTGTTGCGACCCT 58.939 61.111 0.45 0.00 41.03 4.34
4325 6493 1.079750 GAGGGTCTCTGTTGCGACC 60.080 63.158 0.45 0.00 44.89 4.79
4326 6494 1.444553 CGAGGGTCTCTGTTGCGAC 60.445 63.158 0.00 0.00 0.00 5.19
4327 6495 2.636412 CCGAGGGTCTCTGTTGCGA 61.636 63.158 0.00 0.00 0.00 5.10
4328 6496 2.125912 CCGAGGGTCTCTGTTGCG 60.126 66.667 0.00 0.00 0.00 4.85
4329 6497 2.266055 CCCGAGGGTCTCTGTTGC 59.734 66.667 0.00 0.00 0.00 4.17
4330 6498 2.232298 GAGCCCGAGGGTCTCTGTTG 62.232 65.000 18.82 0.00 45.63 3.33
4331 6499 1.985116 GAGCCCGAGGGTCTCTGTT 60.985 63.158 18.82 0.00 45.63 3.16
4332 6500 2.363147 GAGCCCGAGGGTCTCTGT 60.363 66.667 18.82 0.00 45.63 3.41
4333 6501 3.522731 CGAGCCCGAGGGTCTCTG 61.523 72.222 21.54 14.84 46.76 3.35
4334 6502 4.049817 ACGAGCCCGAGGGTCTCT 62.050 66.667 21.54 8.29 46.76 3.10
4335 6503 3.827898 CACGAGCCCGAGGGTCTC 61.828 72.222 17.17 17.17 46.76 3.36
4350 6518 3.414700 CTGACTGAACCGCCGCAC 61.415 66.667 0.00 0.00 0.00 5.34
4351 6519 3.611674 TCTGACTGAACCGCCGCA 61.612 61.111 0.00 0.00 0.00 5.69
4352 6520 3.112709 GTCTGACTGAACCGCCGC 61.113 66.667 0.00 0.00 0.00 6.53
4353 6521 2.805353 CGTCTGACTGAACCGCCG 60.805 66.667 6.21 0.00 0.00 6.46
4354 6522 2.432628 CCGTCTGACTGAACCGCC 60.433 66.667 6.21 0.00 0.00 6.13
4355 6523 2.227089 ATCCCGTCTGACTGAACCGC 62.227 60.000 6.21 0.00 0.00 5.68
4356 6524 0.179134 GATCCCGTCTGACTGAACCG 60.179 60.000 6.21 0.00 0.00 4.44
4357 6525 1.187087 AGATCCCGTCTGACTGAACC 58.813 55.000 6.21 0.45 35.31 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.