Multiple sequence alignment - TraesCS5D01G424000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G424000 chr5D 100.000 6576 0 0 391 6966 483689978 483696553 0.000000e+00 12144.0
1 TraesCS5D01G424000 chr5D 100.000 202 0 0 1 202 483689588 483689789 2.370000e-99 374.0
2 TraesCS5D01G424000 chr5D 90.175 285 25 3 4836 5117 483693819 483694103 1.100000e-97 368.0
3 TraesCS5D01G424000 chr5D 90.175 285 25 3 4232 4516 483694423 483694704 1.100000e-97 368.0
4 TraesCS5D01G424000 chr5A 91.070 2889 164 39 397 3265 605146144 605148958 0.000000e+00 3819.0
5 TraesCS5D01G424000 chr5A 92.796 2318 103 21 3431 5688 605148957 605151270 0.000000e+00 3297.0
6 TraesCS5D01G424000 chr5A 87.592 814 50 31 5851 6646 605151305 605152085 0.000000e+00 896.0
7 TraesCS5D01G424000 chr5A 89.007 282 27 4 4235 4516 605150418 605150695 5.170000e-91 346.0
8 TraesCS5D01G424000 chr5A 85.666 293 29 4 4838 5117 605149772 605150064 5.280000e-76 296.0
9 TraesCS5D01G424000 chr5A 90.000 170 10 4 6802 6966 605152365 605152532 5.470000e-51 213.0
10 TraesCS5D01G424000 chr5B 90.615 2131 132 34 393 2506 594866523 594868602 0.000000e+00 2765.0
11 TraesCS5D01G424000 chr5B 92.074 1514 65 16 3431 4897 594869308 594870813 0.000000e+00 2080.0
12 TraesCS5D01G424000 chr5B 86.671 1403 98 56 5616 6966 594871600 594872965 0.000000e+00 1472.0
13 TraesCS5D01G424000 chr5B 94.823 734 25 4 2534 3265 594868587 594869309 0.000000e+00 1133.0
14 TraesCS5D01G424000 chr5B 94.429 700 37 2 4896 5594 594870915 594871613 0.000000e+00 1075.0
15 TraesCS5D01G424000 chr5B 86.926 283 28 4 4838 5117 594870123 594870399 6.790000e-80 309.0
16 TraesCS5D01G424000 chr5B 90.950 221 18 2 4296 4516 594870918 594871136 5.280000e-76 296.0
17 TraesCS5D01G424000 chr5B 87.654 162 12 4 4611 4764 324708125 324708286 1.540000e-41 182.0
18 TraesCS5D01G424000 chr5B 80.586 273 19 14 4611 4852 317855822 317855553 5.550000e-41 180.0
19 TraesCS5D01G424000 chr1B 86.508 252 12 5 4607 4836 181317072 181317323 2.490000e-64 257.0
20 TraesCS5D01G424000 chr1B 90.173 173 9 6 3263 3435 10372004 10372168 1.180000e-52 219.0
21 TraesCS5D01G424000 chr6D 89.773 176 16 1 3262 3435 26627087 26626912 2.530000e-54 224.0
22 TraesCS5D01G424000 chr6B 89.655 174 11 7 3264 3435 199754848 199755016 1.520000e-51 215.0
23 TraesCS5D01G424000 chr6B 91.667 84 7 0 4753 4836 77377764 77377847 4.410000e-22 117.0
24 TraesCS5D01G424000 chr7D 89.595 173 11 4 3261 3433 254573704 254573869 5.470000e-51 213.0
25 TraesCS5D01G424000 chr7D 89.441 161 9 4 4612 4764 145766699 145766859 5.510000e-46 196.0
26 TraesCS5D01G424000 chr2B 90.000 170 10 3 3263 3432 659017050 659017212 5.470000e-51 213.0
27 TraesCS5D01G424000 chr2B 88.764 178 12 6 3264 3441 480933169 480933338 1.970000e-50 211.0
28 TraesCS5D01G424000 chr1A 89.595 173 11 3 3264 3436 588138508 588138673 5.470000e-51 213.0
29 TraesCS5D01G424000 chr1A 77.255 255 28 9 4613 4837 418036614 418036360 9.490000e-24 122.0
30 TraesCS5D01G424000 chr4D 83.398 259 11 5 4610 4836 208560431 208560173 1.970000e-50 211.0
31 TraesCS5D01G424000 chr4D 83.230 161 9 5 4612 4764 474330652 474330502 1.580000e-26 132.0
32 TraesCS5D01G424000 chr3D 88.701 177 13 7 3260 3435 300567951 300567781 7.080000e-50 209.0
33 TraesCS5D01G424000 chr2D 88.701 177 13 6 3260 3436 425155515 425155684 7.080000e-50 209.0
34 TraesCS5D01G424000 chr7A 90.683 161 7 4 4612 4764 146456177 146456337 2.550000e-49 207.0
35 TraesCS5D01G424000 chr7A 96.250 80 3 0 4753 4832 146456391 146456470 1.580000e-26 132.0
36 TraesCS5D01G424000 chr7B 82.101 257 14 4 4612 4836 107925594 107925850 2.560000e-44 191.0
37 TraesCS5D01G424000 chr3B 79.245 106 19 3 393 496 543155665 543155561 3.490000e-08 71.3
38 TraesCS5D01G424000 chr3B 79.439 107 17 5 402 506 761335964 761335861 3.490000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G424000 chr5D 483689588 483696553 6965 False 3313.500000 12144 95.087500 1 6966 4 chr5D.!!$F1 6965
1 TraesCS5D01G424000 chr5A 605146144 605152532 6388 False 1477.833333 3819 89.355167 397 6966 6 chr5A.!!$F1 6569
2 TraesCS5D01G424000 chr5B 594866523 594872965 6442 False 1304.285714 2765 90.926857 393 6966 7 chr5B.!!$F2 6573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
713 717 0.182061 GCTCCCATGCTCAATCCAGA 59.818 55.0 0.00 0.00 0.00 3.86 F
1068 1088 0.032416 AGGGCGTGTCCTACACCTAT 60.032 55.0 4.69 0.00 45.93 2.57 F
1971 1991 0.890996 CCCAGGAGGTTTGTGCTGTC 60.891 60.0 0.00 0.00 34.21 3.51 F
2821 2853 0.254178 CCACATAGCCTGGCAGTCTT 59.746 55.0 22.65 1.45 0.00 3.01 F
3705 3744 0.037590 TGTTTTGCTAGGACGGCCAT 59.962 50.0 11.69 0.00 36.29 4.40 F
4619 4676 0.179062 CACTGAGACCTAGGGCATGC 60.179 60.0 19.45 9.90 0.00 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 1739 0.108615 GCTCTAGCCTTCGCTTGTCA 60.109 55.000 0.00 0.00 45.55 3.58 R
2119 2144 2.093310 CACTCTACAAACAGCATGCTCG 59.907 50.000 19.68 15.84 42.53 5.03 R
3416 3449 2.108970 GAATGTACTCCCTCCGTTCCT 58.891 52.381 0.00 0.00 0.00 3.36 R
4445 4502 1.593006 GTTATCCATTCGACAGGCACG 59.407 52.381 0.00 0.00 0.00 5.34 R
5628 5827 1.033746 CCATGACCAGGCATGACACC 61.034 60.000 15.21 0.00 46.64 4.16 R
6218 6440 0.179040 TGAAAACGGCCGTTCTTCCT 60.179 50.000 41.09 24.38 37.35 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.383861 GCGCGGCCTTATTTTTGC 58.616 55.556 8.83 0.00 0.00 3.68
18 19 1.445238 GCGCGGCCTTATTTTTGCA 60.445 52.632 8.83 0.00 0.00 4.08
19 20 1.011451 GCGCGGCCTTATTTTTGCAA 61.011 50.000 8.83 0.00 0.00 4.08
20 21 0.713329 CGCGGCCTTATTTTTGCAAC 59.287 50.000 0.00 0.00 0.00 4.17
21 22 1.075542 GCGGCCTTATTTTTGCAACC 58.924 50.000 0.00 0.00 0.00 3.77
22 23 1.337728 GCGGCCTTATTTTTGCAACCT 60.338 47.619 0.00 0.00 0.00 3.50
23 24 2.870035 GCGGCCTTATTTTTGCAACCTT 60.870 45.455 0.00 0.00 0.00 3.50
24 25 3.615351 GCGGCCTTATTTTTGCAACCTTA 60.615 43.478 0.00 0.00 0.00 2.69
25 26 4.754322 CGGCCTTATTTTTGCAACCTTAT 58.246 39.130 0.00 0.00 0.00 1.73
26 27 5.175127 CGGCCTTATTTTTGCAACCTTATT 58.825 37.500 0.00 0.00 0.00 1.40
27 28 5.641636 CGGCCTTATTTTTGCAACCTTATTT 59.358 36.000 0.00 0.00 0.00 1.40
28 29 6.148645 CGGCCTTATTTTTGCAACCTTATTTT 59.851 34.615 0.00 0.00 0.00 1.82
29 30 7.526608 GGCCTTATTTTTGCAACCTTATTTTC 58.473 34.615 0.00 0.00 0.00 2.29
30 31 7.390440 GGCCTTATTTTTGCAACCTTATTTTCT 59.610 33.333 0.00 0.00 0.00 2.52
31 32 9.430623 GCCTTATTTTTGCAACCTTATTTTCTA 57.569 29.630 0.00 0.00 0.00 2.10
38 39 9.912634 TTTTGCAACCTTATTTTCTATGAGAAG 57.087 29.630 0.00 0.00 35.37 2.85
39 40 7.088589 TGCAACCTTATTTTCTATGAGAAGC 57.911 36.000 0.00 0.00 35.37 3.86
40 41 6.095440 TGCAACCTTATTTTCTATGAGAAGCC 59.905 38.462 0.00 0.00 35.37 4.35
41 42 6.460261 GCAACCTTATTTTCTATGAGAAGCCC 60.460 42.308 0.00 0.00 35.37 5.19
42 43 6.327386 ACCTTATTTTCTATGAGAAGCCCA 57.673 37.500 0.00 0.00 35.37 5.36
43 44 6.731467 ACCTTATTTTCTATGAGAAGCCCAA 58.269 36.000 0.00 0.00 35.37 4.12
44 45 6.603599 ACCTTATTTTCTATGAGAAGCCCAAC 59.396 38.462 0.00 0.00 35.37 3.77
45 46 6.039829 CCTTATTTTCTATGAGAAGCCCAACC 59.960 42.308 0.00 0.00 35.37 3.77
46 47 4.657814 TTTTCTATGAGAAGCCCAACCT 57.342 40.909 0.00 0.00 35.37 3.50
47 48 4.657814 TTTCTATGAGAAGCCCAACCTT 57.342 40.909 0.00 0.00 35.37 3.50
48 49 5.772393 TTTCTATGAGAAGCCCAACCTTA 57.228 39.130 0.00 0.00 35.37 2.69
49 50 5.975988 TTCTATGAGAAGCCCAACCTTAT 57.024 39.130 0.00 0.00 29.50 1.73
50 51 5.975988 TCTATGAGAAGCCCAACCTTATT 57.024 39.130 0.00 0.00 0.00 1.40
51 52 6.327386 TCTATGAGAAGCCCAACCTTATTT 57.673 37.500 0.00 0.00 0.00 1.40
52 53 6.731467 TCTATGAGAAGCCCAACCTTATTTT 58.269 36.000 0.00 0.00 0.00 1.82
53 54 5.921962 ATGAGAAGCCCAACCTTATTTTC 57.078 39.130 0.00 0.00 0.00 2.29
54 55 3.756434 TGAGAAGCCCAACCTTATTTTCG 59.244 43.478 0.00 0.00 0.00 3.46
55 56 2.492088 AGAAGCCCAACCTTATTTTCGC 59.508 45.455 0.00 0.00 0.00 4.70
56 57 1.917872 AGCCCAACCTTATTTTCGCA 58.082 45.000 0.00 0.00 0.00 5.10
57 58 2.243810 AGCCCAACCTTATTTTCGCAA 58.756 42.857 0.00 0.00 0.00 4.85
58 59 2.231235 AGCCCAACCTTATTTTCGCAAG 59.769 45.455 0.00 0.00 0.00 4.01
88 89 6.376978 CAACATGTGCTTCTCTAGAAAAAGG 58.623 40.000 0.00 3.03 33.07 3.11
89 90 5.006386 ACATGTGCTTCTCTAGAAAAAGGG 58.994 41.667 13.63 0.00 33.07 3.95
90 91 4.021102 TGTGCTTCTCTAGAAAAAGGGG 57.979 45.455 13.63 0.00 33.07 4.79
91 92 3.650942 TGTGCTTCTCTAGAAAAAGGGGA 59.349 43.478 13.63 0.00 33.07 4.81
92 93 4.104102 TGTGCTTCTCTAGAAAAAGGGGAA 59.896 41.667 13.63 3.34 33.07 3.97
93 94 5.070685 GTGCTTCTCTAGAAAAAGGGGAAA 58.929 41.667 13.63 0.00 33.07 3.13
94 95 5.535030 GTGCTTCTCTAGAAAAAGGGGAAAA 59.465 40.000 13.63 0.00 33.07 2.29
95 96 6.209589 GTGCTTCTCTAGAAAAAGGGGAAAAT 59.790 38.462 13.63 0.00 33.07 1.82
96 97 7.393515 GTGCTTCTCTAGAAAAAGGGGAAAATA 59.606 37.037 13.63 0.00 33.07 1.40
97 98 7.393515 TGCTTCTCTAGAAAAAGGGGAAAATAC 59.606 37.037 13.63 0.00 33.07 1.89
98 99 7.148052 GCTTCTCTAGAAAAAGGGGAAAATACC 60.148 40.741 13.63 0.00 33.07 2.73
99 100 7.337826 TCTCTAGAAAAAGGGGAAAATACCA 57.662 36.000 0.00 0.00 0.00 3.25
100 101 7.173032 TCTCTAGAAAAAGGGGAAAATACCAC 58.827 38.462 0.00 0.00 0.00 4.16
101 102 6.250711 TCTAGAAAAAGGGGAAAATACCACC 58.749 40.000 0.00 0.00 33.07 4.61
102 103 5.087923 AGAAAAAGGGGAAAATACCACCT 57.912 39.130 0.00 0.00 33.07 4.00
103 104 5.084519 AGAAAAAGGGGAAAATACCACCTC 58.915 41.667 0.00 0.00 33.07 3.85
104 105 4.759793 AAAAGGGGAAAATACCACCTCT 57.240 40.909 0.00 0.00 35.88 3.69
105 106 3.739401 AAGGGGAAAATACCACCTCTG 57.261 47.619 0.00 0.00 34.45 3.35
106 107 1.285078 AGGGGAAAATACCACCTCTGC 59.715 52.381 0.00 0.00 32.79 4.26
107 108 1.285078 GGGGAAAATACCACCTCTGCT 59.715 52.381 0.00 0.00 0.00 4.24
108 109 2.291605 GGGGAAAATACCACCTCTGCTT 60.292 50.000 0.00 0.00 0.00 3.91
109 110 3.017442 GGGAAAATACCACCTCTGCTTC 58.983 50.000 0.00 0.00 0.00 3.86
110 111 3.017442 GGAAAATACCACCTCTGCTTCC 58.983 50.000 0.00 0.00 0.00 3.46
111 112 2.808906 AAATACCACCTCTGCTTCCC 57.191 50.000 0.00 0.00 0.00 3.97
112 113 0.919710 AATACCACCTCTGCTTCCCC 59.080 55.000 0.00 0.00 0.00 4.81
113 114 0.988678 ATACCACCTCTGCTTCCCCC 60.989 60.000 0.00 0.00 0.00 5.40
130 131 3.636153 CCCCCAAAAAGTGAAAACCAA 57.364 42.857 0.00 0.00 0.00 3.67
131 132 3.275143 CCCCCAAAAAGTGAAAACCAAC 58.725 45.455 0.00 0.00 0.00 3.77
132 133 3.307762 CCCCCAAAAAGTGAAAACCAACA 60.308 43.478 0.00 0.00 0.00 3.33
133 134 4.327680 CCCCAAAAAGTGAAAACCAACAA 58.672 39.130 0.00 0.00 0.00 2.83
134 135 4.155099 CCCCAAAAAGTGAAAACCAACAAC 59.845 41.667 0.00 0.00 0.00 3.32
135 136 5.000591 CCCAAAAAGTGAAAACCAACAACT 58.999 37.500 0.00 0.00 0.00 3.16
136 137 5.106752 CCCAAAAAGTGAAAACCAACAACTG 60.107 40.000 0.00 0.00 0.00 3.16
137 138 5.468409 CCAAAAAGTGAAAACCAACAACTGT 59.532 36.000 0.00 0.00 0.00 3.55
138 139 6.361899 CAAAAAGTGAAAACCAACAACTGTG 58.638 36.000 0.00 0.00 0.00 3.66
139 140 3.230743 AGTGAAAACCAACAACTGTGC 57.769 42.857 0.00 0.00 0.00 4.57
140 141 2.560542 AGTGAAAACCAACAACTGTGCA 59.439 40.909 0.00 0.00 0.00 4.57
141 142 3.195396 AGTGAAAACCAACAACTGTGCAT 59.805 39.130 0.00 0.00 0.00 3.96
142 143 3.551485 GTGAAAACCAACAACTGTGCATC 59.449 43.478 0.00 0.00 0.00 3.91
143 144 2.888834 AAACCAACAACTGTGCATCC 57.111 45.000 0.00 0.00 0.00 3.51
144 145 0.667993 AACCAACAACTGTGCATCCG 59.332 50.000 0.00 0.00 0.00 4.18
145 146 1.172180 ACCAACAACTGTGCATCCGG 61.172 55.000 0.00 0.00 0.00 5.14
146 147 1.580942 CAACAACTGTGCATCCGGG 59.419 57.895 0.00 0.00 0.00 5.73
147 148 2.268076 AACAACTGTGCATCCGGGC 61.268 57.895 0.00 0.00 0.00 6.13
148 149 2.360350 CAACTGTGCATCCGGGCT 60.360 61.111 0.00 0.00 34.04 5.19
149 150 2.045926 AACTGTGCATCCGGGCTC 60.046 61.111 0.00 0.00 34.04 4.70
150 151 2.596851 AACTGTGCATCCGGGCTCT 61.597 57.895 0.00 0.00 34.04 4.09
151 152 2.513204 CTGTGCATCCGGGCTCTG 60.513 66.667 0.00 0.00 34.04 3.35
152 153 3.320879 CTGTGCATCCGGGCTCTGT 62.321 63.158 0.00 0.00 34.04 3.41
153 154 2.045926 GTGCATCCGGGCTCTGTT 60.046 61.111 0.00 0.00 34.04 3.16
154 155 1.675641 GTGCATCCGGGCTCTGTTT 60.676 57.895 0.00 0.00 34.04 2.83
155 156 1.074775 TGCATCCGGGCTCTGTTTT 59.925 52.632 0.00 0.00 34.04 2.43
156 157 0.539438 TGCATCCGGGCTCTGTTTTT 60.539 50.000 0.00 0.00 34.04 1.94
420 421 8.287439 TGGACTTAGTTTCAAAAATCTCAACA 57.713 30.769 0.00 0.00 0.00 3.33
479 480 5.643379 ACGCATGGTTCAACAGATAAAAT 57.357 34.783 0.00 0.00 0.00 1.82
485 486 7.410728 GCATGGTTCAACAGATAAAATGTTTCG 60.411 37.037 0.00 0.00 38.80 3.46
529 533 5.055642 TCTCAGATTACGACAAATGACGT 57.944 39.130 14.52 14.52 46.64 4.34
536 540 2.409012 ACGACAAATGACGTACATGCA 58.591 42.857 9.03 0.00 43.69 3.96
557 561 4.060900 CAGTACGCCATTTATCAGCATCT 58.939 43.478 0.00 0.00 0.00 2.90
577 581 3.256879 TCTGAGAAGATGGACAGTGACAC 59.743 47.826 0.00 0.00 0.00 3.67
579 583 3.643320 TGAGAAGATGGACAGTGACACTT 59.357 43.478 5.04 0.00 0.00 3.16
581 585 5.047731 TGAGAAGATGGACAGTGACACTTAG 60.048 44.000 5.04 0.00 0.00 2.18
587 591 3.574396 TGGACAGTGACACTTAGAAGAGG 59.426 47.826 5.04 0.00 0.00 3.69
588 592 3.574826 GGACAGTGACACTTAGAAGAGGT 59.425 47.826 5.04 0.00 0.00 3.85
589 593 4.765856 GGACAGTGACACTTAGAAGAGGTA 59.234 45.833 5.04 0.00 0.00 3.08
590 594 5.335819 GGACAGTGACACTTAGAAGAGGTAC 60.336 48.000 5.04 0.00 0.00 3.34
591 595 4.215827 ACAGTGACACTTAGAAGAGGTACG 59.784 45.833 5.04 0.00 0.00 3.67
592 596 3.757493 AGTGACACTTAGAAGAGGTACGG 59.243 47.826 1.07 0.00 0.00 4.02
593 597 3.755378 GTGACACTTAGAAGAGGTACGGA 59.245 47.826 0.00 0.00 0.00 4.69
617 621 7.254227 AGTAGCTCTTAACTAGTCTCAATCG 57.746 40.000 0.00 0.00 0.00 3.34
677 681 3.486263 CCGTAAAAGGAGCGGCAG 58.514 61.111 1.45 0.00 38.99 4.85
678 682 2.106683 CCGTAAAAGGAGCGGCAGG 61.107 63.158 1.45 0.00 38.99 4.85
679 683 2.750888 CGTAAAAGGAGCGGCAGGC 61.751 63.158 1.45 0.00 44.05 4.85
709 713 3.881937 AAAAAGCTCCCATGCTCAATC 57.118 42.857 0.00 0.00 43.24 2.67
711 715 0.627451 AAGCTCCCATGCTCAATCCA 59.373 50.000 0.00 0.00 43.24 3.41
712 716 0.183014 AGCTCCCATGCTCAATCCAG 59.817 55.000 0.00 0.00 39.34 3.86
713 717 0.182061 GCTCCCATGCTCAATCCAGA 59.818 55.000 0.00 0.00 0.00 3.86
714 718 1.202903 GCTCCCATGCTCAATCCAGAT 60.203 52.381 0.00 0.00 0.00 2.90
715 719 2.039480 GCTCCCATGCTCAATCCAGATA 59.961 50.000 0.00 0.00 0.00 1.98
716 720 3.672808 CTCCCATGCTCAATCCAGATAC 58.327 50.000 0.00 0.00 0.00 2.24
717 721 2.037641 TCCCATGCTCAATCCAGATACG 59.962 50.000 0.00 0.00 0.00 3.06
718 722 2.420642 CCATGCTCAATCCAGATACGG 58.579 52.381 0.00 0.00 0.00 4.02
719 723 2.420642 CATGCTCAATCCAGATACGGG 58.579 52.381 0.00 0.00 0.00 5.28
720 724 1.496060 TGCTCAATCCAGATACGGGT 58.504 50.000 0.00 0.00 0.00 5.28
769 773 1.755179 GCCTGCATTTGGCTAGAGAA 58.245 50.000 8.16 0.00 46.38 2.87
771 775 2.692041 GCCTGCATTTGGCTAGAGAAAT 59.308 45.455 8.16 0.00 46.38 2.17
772 776 3.490419 GCCTGCATTTGGCTAGAGAAATG 60.490 47.826 16.83 16.83 46.38 2.32
820 833 3.465296 AAGATACGAGTCCGCGCGG 62.465 63.158 42.13 42.13 42.14 6.46
844 857 2.094675 CCCACATGTCATGGAGGTTTC 58.905 52.381 17.08 0.00 39.87 2.78
845 858 2.094675 CCACATGTCATGGAGGTTTCC 58.905 52.381 17.08 0.00 44.31 3.13
884 897 2.785713 GCCAAGCGACCTAAACAAAA 57.214 45.000 0.00 0.00 0.00 2.44
885 898 2.390938 GCCAAGCGACCTAAACAAAAC 58.609 47.619 0.00 0.00 0.00 2.43
886 899 2.223618 GCCAAGCGACCTAAACAAAACA 60.224 45.455 0.00 0.00 0.00 2.83
895 908 4.616553 ACCTAAACAAAACAAAGGTCCCT 58.383 39.130 0.00 0.00 35.67 4.20
900 913 3.774734 ACAAAACAAAGGTCCCTATCCC 58.225 45.455 0.00 0.00 0.00 3.85
928 942 1.826921 CATCCAGCACCCATCCAGC 60.827 63.158 0.00 0.00 0.00 4.85
984 1004 2.700773 GCCAGCGCCAAAACCCTAG 61.701 63.158 2.29 0.00 0.00 3.02
988 1008 0.608308 AGCGCCAAAACCCTAGAACC 60.608 55.000 2.29 0.00 0.00 3.62
1068 1088 0.032416 AGGGCGTGTCCTACACCTAT 60.032 55.000 4.69 0.00 45.93 2.57
1324 1344 1.758906 CTCCCCTTCGTCTCCTCCC 60.759 68.421 0.00 0.00 0.00 4.30
1626 1646 1.366366 CGTCACCTCCAAGGACGTT 59.634 57.895 0.00 0.00 46.68 3.99
1689 1709 1.006102 AGCAGACGGGAAGTTCGTG 60.006 57.895 0.00 0.00 41.22 4.35
1695 1715 2.943653 GGGAAGTTCGTGGTTGCG 59.056 61.111 0.00 0.00 0.00 4.85
1800 1820 1.338136 CGCAGGGGAACTCCACCTAT 61.338 60.000 0.00 0.00 41.50 2.57
1809 1829 3.526534 GAACTCCACCTATCAGCTTGAC 58.473 50.000 0.00 0.00 0.00 3.18
1817 1837 5.699915 CCACCTATCAGCTTGACATGATAAG 59.300 44.000 0.00 4.51 37.81 1.73
1884 1904 2.568090 GTGACAATTGGGCAGGCG 59.432 61.111 10.83 0.00 0.00 5.52
1971 1991 0.890996 CCCAGGAGGTTTGTGCTGTC 60.891 60.000 0.00 0.00 34.21 3.51
2004 2027 7.878644 GGACAGGTATATTTCTCATAAACTCCC 59.121 40.741 0.00 0.00 0.00 4.30
2060 2085 5.280945 TGTTAACTTCATTTTGTCTGCTGC 58.719 37.500 7.22 0.00 0.00 5.25
2139 2164 2.289072 ACGAGCATGCTGTTTGTAGAGT 60.289 45.455 28.27 7.64 0.00 3.24
2149 2174 7.473027 TGCTGTTTGTAGAGTGTAAAGTTAC 57.527 36.000 0.00 0.00 0.00 2.50
2268 2293 5.499139 TCCAAACATCCTATTTTGATCGC 57.501 39.130 0.00 0.00 35.13 4.58
2309 2334 8.911918 TTCAAGTAATTAGTAAGTGGCTGAAA 57.088 30.769 0.00 0.00 0.00 2.69
2350 2375 1.286880 CGGCTTTGAAAGTGGCCAG 59.713 57.895 5.11 0.00 44.27 4.85
2361 2386 3.913445 TGGCCAGCCACCCAACAT 61.913 61.111 7.43 0.00 41.89 2.71
2362 2387 2.604382 GGCCAGCCACCCAACATT 60.604 61.111 3.12 0.00 35.81 2.71
2363 2388 2.658422 GCCAGCCACCCAACATTG 59.342 61.111 0.00 0.00 0.00 2.82
2364 2389 1.907807 GCCAGCCACCCAACATTGA 60.908 57.895 0.00 0.00 0.00 2.57
2365 2390 1.470996 GCCAGCCACCCAACATTGAA 61.471 55.000 0.00 0.00 0.00 2.69
2366 2391 0.604578 CCAGCCACCCAACATTGAAG 59.395 55.000 0.00 0.00 0.00 3.02
2421 2447 4.194640 GCTCAAGCTCTATCACCAAATCA 58.805 43.478 0.00 0.00 38.21 2.57
2423 2449 5.298777 GCTCAAGCTCTATCACCAAATCAAT 59.701 40.000 0.00 0.00 38.21 2.57
2440 2466 8.025445 CCAAATCAATTTTCTGAACTCCTACAG 58.975 37.037 0.00 0.00 35.72 2.74
2531 2557 9.555303 CTGGATGCCATGTAAACCATATGGTTG 62.555 44.444 35.16 24.29 44.81 3.77
2542 2568 4.637483 CCATATGGTTGGAACACATGAC 57.363 45.455 14.09 0.00 39.29 3.06
2543 2569 4.015764 CCATATGGTTGGAACACATGACA 58.984 43.478 14.09 0.00 39.29 3.58
2544 2570 4.462132 CCATATGGTTGGAACACATGACAA 59.538 41.667 14.09 0.00 39.29 3.18
2545 2571 5.401550 CATATGGTTGGAACACATGACAAC 58.598 41.667 0.00 6.58 39.29 3.32
2546 2572 3.011566 TGGTTGGAACACATGACAACT 57.988 42.857 0.00 0.00 42.01 3.16
2547 2573 3.360867 TGGTTGGAACACATGACAACTT 58.639 40.909 0.00 0.00 42.01 2.66
2710 2742 6.460676 CCATTCTTGAAATGGGAGTAGCATTC 60.461 42.308 8.61 0.00 42.63 2.67
2821 2853 0.254178 CCACATAGCCTGGCAGTCTT 59.746 55.000 22.65 1.45 0.00 3.01
3054 3086 2.116125 GCTTTGTCACTGGGGGCT 59.884 61.111 0.00 0.00 0.00 5.19
3126 3158 5.249852 TGGGGCCTATGAATACAAGGTATAC 59.750 44.000 0.84 0.00 32.67 1.47
3127 3159 5.249852 GGGGCCTATGAATACAAGGTATACA 59.750 44.000 0.84 0.00 32.67 2.29
3128 3160 6.069615 GGGGCCTATGAATACAAGGTATACAT 60.070 42.308 0.84 0.00 32.67 2.29
3129 3161 7.402862 GGGCCTATGAATACAAGGTATACATT 58.597 38.462 0.84 0.13 32.67 2.71
3130 3162 7.336931 GGGCCTATGAATACAAGGTATACATTG 59.663 40.741 24.59 24.59 42.66 2.82
3131 3163 7.336931 GGCCTATGAATACAAGGTATACATTGG 59.663 40.741 28.21 14.18 41.44 3.16
3132 3164 7.883311 GCCTATGAATACAAGGTATACATTGGT 59.117 37.037 28.21 18.14 41.44 3.67
3164 3197 4.368315 CCTTTTGCAACAGGGTTAGTTTC 58.632 43.478 21.83 0.00 0.00 2.78
3203 3236 2.229792 GTGCTCAAGTCCACAAATCCA 58.770 47.619 0.00 0.00 32.37 3.41
3206 3239 2.030805 GCTCAAGTCCACAAATCCACAC 60.031 50.000 0.00 0.00 0.00 3.82
3215 3248 5.122396 GTCCACAAATCCACACATTAGAGAC 59.878 44.000 0.00 0.00 0.00 3.36
3223 3256 6.911250 TCCACACATTAGAGACTAAACTCA 57.089 37.500 0.00 0.00 39.14 3.41
3265 3298 8.836413 ACTACAACCATGTACATGCAAATATAC 58.164 33.333 27.27 0.00 41.05 1.47
3266 3299 7.880160 ACAACCATGTACATGCAAATATACT 57.120 32.000 27.27 3.39 38.24 2.12
3267 3300 7.930217 ACAACCATGTACATGCAAATATACTC 58.070 34.615 27.27 0.00 38.24 2.59
3268 3301 7.013274 ACAACCATGTACATGCAAATATACTCC 59.987 37.037 27.27 0.00 38.24 3.85
3269 3302 6.003950 ACCATGTACATGCAAATATACTCCC 58.996 40.000 27.27 0.00 37.49 4.30
3270 3303 6.183361 ACCATGTACATGCAAATATACTCCCT 60.183 38.462 27.27 0.00 37.49 4.20
3271 3304 6.372659 CCATGTACATGCAAATATACTCCCTC 59.627 42.308 27.27 0.00 37.49 4.30
3272 3305 5.865085 TGTACATGCAAATATACTCCCTCC 58.135 41.667 0.00 0.00 0.00 4.30
3273 3306 4.008074 ACATGCAAATATACTCCCTCCG 57.992 45.455 0.00 0.00 0.00 4.63
3274 3307 3.391296 ACATGCAAATATACTCCCTCCGT 59.609 43.478 0.00 0.00 0.00 4.69
3275 3308 4.141482 ACATGCAAATATACTCCCTCCGTT 60.141 41.667 0.00 0.00 0.00 4.44
3276 3309 4.067972 TGCAAATATACTCCCTCCGTTC 57.932 45.455 0.00 0.00 0.00 3.95
3277 3310 3.181458 TGCAAATATACTCCCTCCGTTCC 60.181 47.826 0.00 0.00 0.00 3.62
3278 3311 3.071167 GCAAATATACTCCCTCCGTTCCT 59.929 47.826 0.00 0.00 0.00 3.36
3279 3312 4.282703 GCAAATATACTCCCTCCGTTCCTA 59.717 45.833 0.00 0.00 0.00 2.94
3280 3313 5.221581 GCAAATATACTCCCTCCGTTCCTAA 60.222 44.000 0.00 0.00 0.00 2.69
3281 3314 6.221659 CAAATATACTCCCTCCGTTCCTAAC 58.778 44.000 0.00 0.00 0.00 2.34
3282 3315 3.684408 ATACTCCCTCCGTTCCTAACT 57.316 47.619 0.00 0.00 0.00 2.24
3283 3316 4.803329 ATACTCCCTCCGTTCCTAACTA 57.197 45.455 0.00 0.00 0.00 2.24
3284 3317 3.684408 ACTCCCTCCGTTCCTAACTAT 57.316 47.619 0.00 0.00 0.00 2.12
3285 3318 4.803329 ACTCCCTCCGTTCCTAACTATA 57.197 45.455 0.00 0.00 0.00 1.31
3286 3319 5.134725 ACTCCCTCCGTTCCTAACTATAA 57.865 43.478 0.00 0.00 0.00 0.98
3287 3320 5.139001 ACTCCCTCCGTTCCTAACTATAAG 58.861 45.833 0.00 0.00 0.00 1.73
3288 3321 5.134725 TCCCTCCGTTCCTAACTATAAGT 57.865 43.478 0.00 0.00 0.00 2.24
3289 3322 5.136105 TCCCTCCGTTCCTAACTATAAGTC 58.864 45.833 0.00 0.00 0.00 3.01
3290 3323 5.103771 TCCCTCCGTTCCTAACTATAAGTCT 60.104 44.000 0.00 0.00 0.00 3.24
3291 3324 5.597594 CCCTCCGTTCCTAACTATAAGTCTT 59.402 44.000 0.00 0.00 0.00 3.01
3292 3325 6.097981 CCCTCCGTTCCTAACTATAAGTCTTT 59.902 42.308 0.00 0.00 0.00 2.52
3293 3326 6.979238 CCTCCGTTCCTAACTATAAGTCTTTG 59.021 42.308 0.00 0.00 0.00 2.77
3294 3327 7.363617 CCTCCGTTCCTAACTATAAGTCTTTGT 60.364 40.741 0.00 0.00 0.00 2.83
3295 3328 8.579850 TCCGTTCCTAACTATAAGTCTTTGTA 57.420 34.615 0.00 0.00 0.00 2.41
3296 3329 8.680903 TCCGTTCCTAACTATAAGTCTTTGTAG 58.319 37.037 0.00 0.00 35.01 2.74
3297 3330 8.680903 CCGTTCCTAACTATAAGTCTTTGTAGA 58.319 37.037 10.17 0.00 33.60 2.59
3298 3331 9.719279 CGTTCCTAACTATAAGTCTTTGTAGAG 57.281 37.037 10.17 0.00 33.60 2.43
3306 3339 9.482175 ACTATAAGTCTTTGTAGAGATTCCACT 57.518 33.333 10.17 0.00 33.60 4.00
3307 3340 9.743057 CTATAAGTCTTTGTAGAGATTCCACTG 57.257 37.037 0.00 0.00 31.67 3.66
3308 3341 6.426646 AAGTCTTTGTAGAGATTCCACTGT 57.573 37.500 0.00 0.00 0.00 3.55
3309 3342 7.540474 AAGTCTTTGTAGAGATTCCACTGTA 57.460 36.000 0.00 0.00 0.00 2.74
3310 3343 7.540474 AGTCTTTGTAGAGATTCCACTGTAA 57.460 36.000 0.00 0.00 0.00 2.41
3311 3344 7.963532 AGTCTTTGTAGAGATTCCACTGTAAA 58.036 34.615 0.00 0.00 0.00 2.01
3312 3345 7.873505 AGTCTTTGTAGAGATTCCACTGTAAAC 59.126 37.037 0.00 0.00 0.00 2.01
3313 3346 7.117956 GTCTTTGTAGAGATTCCACTGTAAACC 59.882 40.741 0.00 0.00 0.00 3.27
3314 3347 6.428083 TTGTAGAGATTCCACTGTAAACCA 57.572 37.500 0.00 0.00 0.00 3.67
3315 3348 5.790593 TGTAGAGATTCCACTGTAAACCAC 58.209 41.667 0.00 0.00 0.00 4.16
3316 3349 4.974645 AGAGATTCCACTGTAAACCACA 57.025 40.909 0.00 0.00 35.30 4.17
3317 3350 5.505181 AGAGATTCCACTGTAAACCACAT 57.495 39.130 0.00 0.00 36.29 3.21
3318 3351 6.620877 AGAGATTCCACTGTAAACCACATA 57.379 37.500 0.00 0.00 36.29 2.29
3319 3352 6.407202 AGAGATTCCACTGTAAACCACATAC 58.593 40.000 0.00 0.00 36.29 2.39
3320 3353 5.175859 AGATTCCACTGTAAACCACATACG 58.824 41.667 0.00 0.00 36.29 3.06
3321 3354 3.322211 TCCACTGTAAACCACATACGG 57.678 47.619 0.00 0.00 36.29 4.02
3322 3355 2.898612 TCCACTGTAAACCACATACGGA 59.101 45.455 0.00 0.00 36.29 4.69
3323 3356 3.516300 TCCACTGTAAACCACATACGGAT 59.484 43.478 0.00 0.00 36.29 4.18
3324 3357 3.621268 CCACTGTAAACCACATACGGATG 59.379 47.826 5.94 5.94 36.29 3.51
3326 3359 5.412640 CACTGTAAACCACATACGGATGTA 58.587 41.667 14.23 0.00 44.82 2.29
3327 3360 6.046593 CACTGTAAACCACATACGGATGTAT 58.953 40.000 14.23 1.38 44.82 2.29
3342 3375 7.658179 ACGGATGTATGTAGATGCATTTTAG 57.342 36.000 0.00 1.10 35.26 1.85
3343 3376 7.441836 ACGGATGTATGTAGATGCATTTTAGA 58.558 34.615 0.00 0.00 35.26 2.10
3344 3377 7.600375 ACGGATGTATGTAGATGCATTTTAGAG 59.400 37.037 0.00 0.00 35.26 2.43
3345 3378 7.600375 CGGATGTATGTAGATGCATTTTAGAGT 59.400 37.037 0.00 0.00 35.26 3.24
3346 3379 9.929180 GGATGTATGTAGATGCATTTTAGAGTA 57.071 33.333 0.00 0.00 35.26 2.59
3366 3399 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
3367 3400 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
3368 3401 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
3369 3402 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3370 3403 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3371 3404 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3372 3405 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3373 3406 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3374 3407 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3375 3408 4.868171 TCACTCATTTTGCTCCGTATGTAC 59.132 41.667 0.00 0.00 0.00 2.90
3376 3409 4.870426 CACTCATTTTGCTCCGTATGTACT 59.130 41.667 0.00 0.00 0.00 2.73
3377 3410 6.040247 CACTCATTTTGCTCCGTATGTACTA 58.960 40.000 0.00 0.00 0.00 1.82
3378 3411 6.701841 CACTCATTTTGCTCCGTATGTACTAT 59.298 38.462 0.00 0.00 0.00 2.12
3379 3412 6.701841 ACTCATTTTGCTCCGTATGTACTATG 59.298 38.462 0.00 0.00 0.00 2.23
3380 3413 6.578944 TCATTTTGCTCCGTATGTACTATGT 58.421 36.000 0.00 0.00 0.00 2.29
3381 3414 7.718525 TCATTTTGCTCCGTATGTACTATGTA 58.281 34.615 0.00 0.00 0.00 2.29
3382 3415 7.865889 TCATTTTGCTCCGTATGTACTATGTAG 59.134 37.037 0.00 0.00 0.00 2.74
3383 3416 6.704289 TTTGCTCCGTATGTACTATGTAGT 57.296 37.500 0.00 0.00 40.24 2.73
3384 3417 5.936686 TGCTCCGTATGTACTATGTAGTC 57.063 43.478 0.00 0.00 37.73 2.59
3385 3418 5.618236 TGCTCCGTATGTACTATGTAGTCT 58.382 41.667 0.00 0.00 37.73 3.24
3386 3419 6.762333 TGCTCCGTATGTACTATGTAGTCTA 58.238 40.000 0.00 0.00 37.73 2.59
3387 3420 7.392418 TGCTCCGTATGTACTATGTAGTCTAT 58.608 38.462 0.00 0.00 37.73 1.98
3388 3421 8.534496 TGCTCCGTATGTACTATGTAGTCTATA 58.466 37.037 0.00 0.00 37.73 1.31
3389 3422 9.033481 GCTCCGTATGTACTATGTAGTCTATAG 57.967 40.741 0.00 0.00 37.73 1.31
3391 3424 9.866798 TCCGTATGTACTATGTAGTCTATAGTG 57.133 37.037 0.00 0.00 40.53 2.74
3392 3425 9.866798 CCGTATGTACTATGTAGTCTATAGTGA 57.133 37.037 0.00 0.00 40.53 3.41
3426 3459 8.804204 ACATAGACTTATATTTAGGAACGGAGG 58.196 37.037 0.00 0.00 0.00 4.30
3427 3460 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3428 3461 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3429 3462 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3430 3463 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3431 3464 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3432 3465 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
3443 3476 4.715297 ACGGAGGGAGTACATTCTATTTGT 59.285 41.667 0.00 0.00 0.00 2.83
3446 3479 5.277857 AGGGAGTACATTCTATTTGTCCG 57.722 43.478 0.00 0.00 0.00 4.79
3455 3488 5.356751 ACATTCTATTTGTCCGCTGCAATTA 59.643 36.000 0.00 0.00 0.00 1.40
3477 3510 0.335019 AAGGTCCCTTAATGGCCACC 59.665 55.000 8.16 0.99 37.46 4.61
3675 3714 5.470845 ACTTGCTTCGCTAATATTGTGAC 57.529 39.130 0.00 0.00 0.00 3.67
3692 3731 7.760131 ATTGTGACTCTTTGAATGTGTTTTG 57.240 32.000 0.00 0.00 0.00 2.44
3705 3744 0.037590 TGTTTTGCTAGGACGGCCAT 59.962 50.000 11.69 0.00 36.29 4.40
3711 3750 1.360551 CTAGGACGGCCATCGAGTG 59.639 63.158 11.69 0.00 42.43 3.51
3989 4028 7.508687 TGCTGGATTACATATCTGCTCTTTAA 58.491 34.615 0.00 0.00 0.00 1.52
3993 4032 8.150945 TGGATTACATATCTGCTCTTTAACTCC 58.849 37.037 0.00 0.00 0.00 3.85
4063 4107 9.233232 GAGAAATAGATTTTGTTGACAAACGTT 57.767 29.630 8.70 0.00 44.56 3.99
4068 4112 7.826260 AGATTTTGTTGACAAACGTTCAAAT 57.174 28.000 0.00 0.00 44.56 2.32
4085 4129 9.665264 ACGTTCAAATCAGTTATTTCTTTTCTC 57.335 29.630 0.00 0.00 35.54 2.87
4140 4187 9.490663 GTACAACTCATAACAATATTCACAAGC 57.509 33.333 0.00 0.00 0.00 4.01
4157 4204 6.347696 TCACAAGCCAAAAGAATGTTTTCAT 58.652 32.000 0.00 0.00 43.05 2.57
4171 4218 3.371898 TGTTTTCATATCTGCAGCTGACG 59.628 43.478 20.43 7.16 0.00 4.35
4203 4250 2.372264 CCCATGGTTCTGTTCATGAGG 58.628 52.381 11.73 1.90 42.25 3.86
4223 4270 6.100004 TGAGGAACATTTCTGATCGACTAAC 58.900 40.000 0.00 0.00 0.00 2.34
4232 4279 8.491152 CATTTCTGATCGACTAACATTGATACC 58.509 37.037 0.00 0.00 0.00 2.73
4233 4280 6.709018 TCTGATCGACTAACATTGATACCA 57.291 37.500 0.00 0.00 0.00 3.25
4426 4483 6.767423 AGTTTAATGGTTCAGCTTGCAAAATT 59.233 30.769 0.00 0.00 0.00 1.82
4526 4583 4.860907 GGTGCTTTTCTTTGCTGACATATG 59.139 41.667 0.00 0.00 0.00 1.78
4619 4676 0.179062 CACTGAGACCTAGGGCATGC 60.179 60.000 19.45 9.90 0.00 4.06
4818 4908 2.884639 ACAAGTATGGCAAAGTGTGGAC 59.115 45.455 0.00 0.00 0.00 4.02
4912 5105 5.583061 TCCGTAATATTCAACGCTCATTTGT 59.417 36.000 5.42 0.00 37.78 2.83
5167 5363 1.152830 TTGTTCTTCCTGGGGTGGC 59.847 57.895 0.00 0.00 0.00 5.01
5277 5475 8.510243 TTTGTCATTATCAGTAGTGAATGCAT 57.490 30.769 3.93 0.00 35.88 3.96
5486 5685 9.132521 GTTGACAAAATAGTTCCAAATCAGATG 57.867 33.333 0.00 0.00 0.00 2.90
5544 5743 6.931840 GTCCCTTTCTCTTACCAATATAGCTG 59.068 42.308 0.00 0.00 0.00 4.24
5549 5748 4.528596 TCTCTTACCAATATAGCTGGCCTC 59.471 45.833 3.32 0.00 37.48 4.70
5570 5769 2.551032 CGGTCCCACTTAGAACCAAAAC 59.449 50.000 0.00 0.00 0.00 2.43
5594 5793 4.212425 CACGCACCACAGTTTATGTAGAAA 59.788 41.667 0.00 0.00 41.41 2.52
5596 5795 5.472137 ACGCACCACAGTTTATGTAGAAATT 59.528 36.000 0.00 0.00 41.41 1.82
5597 5796 5.794945 CGCACCACAGTTTATGTAGAAATTG 59.205 40.000 0.00 0.00 41.41 2.32
5598 5797 6.567701 CGCACCACAGTTTATGTAGAAATTGT 60.568 38.462 0.00 0.00 41.41 2.71
5603 5802 6.738200 CACAGTTTATGTAGAAATTGTGCTCG 59.262 38.462 12.44 0.00 44.65 5.03
5628 5827 4.993584 AGCACTTGTTACAGTGAATGAGAG 59.006 41.667 15.40 0.00 46.29 3.20
5698 5897 4.834496 TGAAAATTCCCTGAAGATGCTTGT 59.166 37.500 0.00 0.00 0.00 3.16
5701 5900 6.916360 AAATTCCCTGAAGATGCTTGTTTA 57.084 33.333 0.00 0.00 0.00 2.01
5703 5902 8.593945 AAATTCCCTGAAGATGCTTGTTTATA 57.406 30.769 0.00 0.00 0.00 0.98
5704 5903 8.773033 AATTCCCTGAAGATGCTTGTTTATAT 57.227 30.769 0.00 0.00 0.00 0.86
5706 5905 7.572523 TCCCTGAAGATGCTTGTTTATATTG 57.427 36.000 0.00 0.00 0.00 1.90
5707 5906 7.118723 TCCCTGAAGATGCTTGTTTATATTGT 58.881 34.615 0.00 0.00 0.00 2.71
5708 5907 8.271458 TCCCTGAAGATGCTTGTTTATATTGTA 58.729 33.333 0.00 0.00 0.00 2.41
5710 5909 9.113838 CCTGAAGATGCTTGTTTATATTGTAGT 57.886 33.333 0.00 0.00 0.00 2.73
5725 5924 7.750229 ATATTGTAGTAGGATGGTTTGCATG 57.250 36.000 0.00 0.00 0.00 4.06
5748 5947 7.640616 TGCATGTTTGTCATTTCAAATAGTG 57.359 32.000 0.00 0.00 39.09 2.74
5749 5948 7.432059 TGCATGTTTGTCATTTCAAATAGTGA 58.568 30.769 0.00 0.00 39.09 3.41
5778 5980 6.777580 ACTGACCAAAGATTCAGGTTTACATT 59.222 34.615 3.79 0.00 43.12 2.71
5786 5988 7.823745 AGATTCAGGTTTACATTGACTGTTT 57.176 32.000 0.00 0.00 39.39 2.83
5796 5998 4.277476 ACATTGACTGTTTTGGAACCTCA 58.723 39.130 0.00 0.00 32.90 3.86
5812 6014 7.284074 TGGAACCTCATTTTTGTCTTGTACTA 58.716 34.615 0.00 0.00 0.00 1.82
5813 6015 7.227910 TGGAACCTCATTTTTGTCTTGTACTAC 59.772 37.037 0.00 0.00 0.00 2.73
5814 6016 7.444487 GGAACCTCATTTTTGTCTTGTACTACT 59.556 37.037 0.00 0.00 0.00 2.57
5823 6025 6.674694 TTGTCTTGTACTACTCCGTATCTC 57.325 41.667 0.00 0.00 0.00 2.75
5832 6034 2.478292 ACTCCGTATCTCCCAATTGGT 58.522 47.619 22.91 7.14 34.77 3.67
5833 6035 3.649843 ACTCCGTATCTCCCAATTGGTA 58.350 45.455 22.91 6.66 34.77 3.25
5861 6063 4.517285 ACAGTGTTGACAACAGAACTGAT 58.483 39.130 29.67 17.93 43.10 2.90
6044 6251 1.521681 GCGGGTCACCTGATAGTGC 60.522 63.158 6.93 0.00 37.68 4.40
6077 6284 3.991051 CAGCTCGTCCGTGTGGGT 61.991 66.667 0.00 0.00 37.00 4.51
6205 6427 3.472652 AGTGATGTTTCCGTTTGCTACA 58.527 40.909 0.00 0.00 0.00 2.74
6206 6428 3.250040 AGTGATGTTTCCGTTTGCTACAC 59.750 43.478 0.00 0.00 0.00 2.90
6224 6446 3.475566 CACTGTGAGTGGAAAGGAAGA 57.524 47.619 0.32 0.00 42.35 2.87
6225 6447 3.808728 CACTGTGAGTGGAAAGGAAGAA 58.191 45.455 0.32 0.00 42.35 2.52
6226 6448 3.561725 CACTGTGAGTGGAAAGGAAGAAC 59.438 47.826 0.32 0.00 42.35 3.01
6227 6449 2.802816 CTGTGAGTGGAAAGGAAGAACG 59.197 50.000 0.00 0.00 0.00 3.95
6228 6450 2.143925 GTGAGTGGAAAGGAAGAACGG 58.856 52.381 0.00 0.00 0.00 4.44
6229 6451 1.157585 GAGTGGAAAGGAAGAACGGC 58.842 55.000 0.00 0.00 0.00 5.68
6231 6453 1.302192 TGGAAAGGAAGAACGGCCG 60.302 57.895 26.86 26.86 0.00 6.13
6232 6454 1.302271 GGAAAGGAAGAACGGCCGT 60.302 57.895 28.70 28.70 0.00 5.68
6234 6456 0.949397 GAAAGGAAGAACGGCCGTTT 59.051 50.000 41.25 28.69 38.60 3.60
6235 6457 1.335810 GAAAGGAAGAACGGCCGTTTT 59.664 47.619 41.25 34.19 38.60 2.43
6236 6458 0.949397 AAGGAAGAACGGCCGTTTTC 59.051 50.000 41.25 36.59 38.60 2.29
6237 6459 0.179040 AGGAAGAACGGCCGTTTTCA 60.179 50.000 37.35 0.00 38.60 2.69
6238 6460 0.237498 GGAAGAACGGCCGTTTTCAG 59.763 55.000 37.35 15.84 38.60 3.02
6239 6461 0.942252 GAAGAACGGCCGTTTTCAGT 59.058 50.000 41.25 23.12 38.60 3.41
6240 6462 0.661020 AAGAACGGCCGTTTTCAGTG 59.339 50.000 41.25 5.90 38.60 3.66
6241 6463 1.370051 GAACGGCCGTTTTCAGTGC 60.370 57.895 41.25 24.31 38.60 4.40
6242 6464 1.782028 GAACGGCCGTTTTCAGTGCT 61.782 55.000 41.25 19.30 38.60 4.40
6243 6465 1.782028 AACGGCCGTTTTCAGTGCTC 61.782 55.000 36.96 0.00 34.22 4.26
6303 6525 2.543861 CCACTTCGGAGGATCACATACG 60.544 54.545 0.00 0.00 36.25 3.06
6305 6527 2.358267 ACTTCGGAGGATCACATACGTC 59.642 50.000 0.00 0.00 36.25 4.34
6382 6606 0.179150 CTGAAAGCGAGAGGGAGTCG 60.179 60.000 0.00 0.00 40.50 4.18
6384 6608 0.456995 GAAAGCGAGAGGGAGTCGTG 60.457 60.000 0.00 0.00 39.69 4.35
6385 6609 2.493907 AAAGCGAGAGGGAGTCGTGC 62.494 60.000 0.00 0.00 39.69 5.34
6387 6611 3.432588 CGAGAGGGAGTCGTGCGT 61.433 66.667 0.00 0.00 32.62 5.24
6388 6612 2.486042 GAGAGGGAGTCGTGCGTC 59.514 66.667 0.00 0.00 0.00 5.19
6389 6613 3.053849 GAGAGGGAGTCGTGCGTCC 62.054 68.421 0.00 0.00 29.67 4.79
6390 6614 4.477975 GAGGGAGTCGTGCGTCCG 62.478 72.222 0.00 0.00 33.13 4.79
6614 6864 4.065088 TCCTTGTTAAGCTTGCTGTACAG 58.935 43.478 18.93 18.93 0.00 2.74
6615 6865 3.189287 CCTTGTTAAGCTTGCTGTACAGG 59.811 47.826 23.95 8.99 0.00 4.00
6654 6904 1.557099 ACTACGATCAGTTCAGGGCA 58.443 50.000 0.00 0.00 0.00 5.36
6656 6906 3.296854 ACTACGATCAGTTCAGGGCATA 58.703 45.455 0.00 0.00 0.00 3.14
6658 6908 5.077564 ACTACGATCAGTTCAGGGCATATA 58.922 41.667 0.00 0.00 0.00 0.86
6659 6909 5.717178 ACTACGATCAGTTCAGGGCATATAT 59.283 40.000 0.00 0.00 0.00 0.86
6661 6911 6.798427 ACGATCAGTTCAGGGCATATATAT 57.202 37.500 0.00 0.00 0.00 0.86
6662 6912 7.187824 ACGATCAGTTCAGGGCATATATATT 57.812 36.000 0.00 0.00 0.00 1.28
6664 6914 6.419116 CGATCAGTTCAGGGCATATATATTCG 59.581 42.308 0.00 0.00 0.00 3.34
6665 6915 5.977635 TCAGTTCAGGGCATATATATTCGG 58.022 41.667 0.00 0.00 0.00 4.30
6667 6917 6.384015 TCAGTTCAGGGCATATATATTCGGAT 59.616 38.462 0.00 0.00 0.00 4.18
6669 6919 8.204160 CAGTTCAGGGCATATATATTCGGATAA 58.796 37.037 0.00 0.00 0.00 1.75
6673 6923 5.836898 AGGGCATATATATTCGGATAACGGA 59.163 40.000 0.00 0.00 44.45 4.69
6674 6924 6.015350 AGGGCATATATATTCGGATAACGGAG 60.015 42.308 0.00 0.00 44.45 4.63
6676 6926 6.157211 GCATATATATTCGGATAACGGAGGG 58.843 44.000 0.00 0.00 44.45 4.30
6677 6927 6.015688 GCATATATATTCGGATAACGGAGGGA 60.016 42.308 0.00 0.00 44.45 4.20
6680 6930 1.108776 TTCGGATAACGGAGGGACTG 58.891 55.000 0.00 0.00 44.45 3.51
6716 6967 1.446366 GGACGGTGGATAGGAAGGC 59.554 63.158 0.00 0.00 0.00 4.35
6765 7020 2.823196 TGCAGTCGTTCAACTGTTTG 57.177 45.000 5.97 0.00 46.77 2.93
6767 7022 2.095213 TGCAGTCGTTCAACTGTTTGAC 59.905 45.455 5.97 0.00 46.77 3.18
6768 7023 2.538939 GCAGTCGTTCAACTGTTTGACC 60.539 50.000 5.97 0.00 46.77 4.02
6794 7050 8.664798 CATCTTCCGTGAAAATTAGACATTGTA 58.335 33.333 0.00 0.00 0.00 2.41
6896 7269 1.523711 CACACGAATCCATCCCCCG 60.524 63.158 0.00 0.00 0.00 5.73
6897 7270 1.687840 ACACGAATCCATCCCCCGA 60.688 57.895 0.00 0.00 0.00 5.14
6898 7271 1.069765 CACGAATCCATCCCCCGAG 59.930 63.158 0.00 0.00 0.00 4.63
6902 7277 4.557149 ATCCATCCCCCGAGCCGA 62.557 66.667 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.011451 TTGCAAAAATAAGGCCGCGC 61.011 50.000 0.00 0.00 0.00 6.86
2 3 1.075542 GGTTGCAAAAATAAGGCCGC 58.924 50.000 0.00 0.00 0.00 6.53
3 4 2.741759 AGGTTGCAAAAATAAGGCCG 57.258 45.000 0.00 0.00 0.00 6.13
12 13 9.912634 CTTCTCATAGAAAATAAGGTTGCAAAA 57.087 29.630 0.00 0.00 33.19 2.44
13 14 8.028938 GCTTCTCATAGAAAATAAGGTTGCAAA 58.971 33.333 0.00 0.00 33.19 3.68
14 15 7.362920 GGCTTCTCATAGAAAATAAGGTTGCAA 60.363 37.037 0.00 0.00 33.19 4.08
15 16 6.095440 GGCTTCTCATAGAAAATAAGGTTGCA 59.905 38.462 0.00 0.00 33.19 4.08
16 17 6.460261 GGGCTTCTCATAGAAAATAAGGTTGC 60.460 42.308 0.00 0.00 33.19 4.17
17 18 6.603201 TGGGCTTCTCATAGAAAATAAGGTTG 59.397 38.462 0.00 0.00 33.19 3.77
18 19 6.731467 TGGGCTTCTCATAGAAAATAAGGTT 58.269 36.000 0.00 0.00 33.19 3.50
19 20 6.327386 TGGGCTTCTCATAGAAAATAAGGT 57.673 37.500 0.00 0.00 33.19 3.50
20 21 6.039829 GGTTGGGCTTCTCATAGAAAATAAGG 59.960 42.308 0.00 0.00 33.19 2.69
21 22 6.830838 AGGTTGGGCTTCTCATAGAAAATAAG 59.169 38.462 0.00 0.00 33.19 1.73
22 23 6.731467 AGGTTGGGCTTCTCATAGAAAATAA 58.269 36.000 0.00 0.00 33.19 1.40
23 24 6.327386 AGGTTGGGCTTCTCATAGAAAATA 57.673 37.500 0.00 0.00 33.19 1.40
24 25 5.198602 AGGTTGGGCTTCTCATAGAAAAT 57.801 39.130 0.00 0.00 33.19 1.82
25 26 4.657814 AGGTTGGGCTTCTCATAGAAAA 57.342 40.909 0.00 0.00 33.19 2.29
26 27 4.657814 AAGGTTGGGCTTCTCATAGAAA 57.342 40.909 0.00 0.00 33.19 2.52
27 28 5.975988 ATAAGGTTGGGCTTCTCATAGAA 57.024 39.130 0.00 0.00 32.50 2.10
28 29 5.975988 AATAAGGTTGGGCTTCTCATAGA 57.024 39.130 0.00 0.00 0.00 1.98
29 30 6.238484 CGAAAATAAGGTTGGGCTTCTCATAG 60.238 42.308 0.00 0.00 0.00 2.23
30 31 5.588648 CGAAAATAAGGTTGGGCTTCTCATA 59.411 40.000 0.00 0.00 0.00 2.15
31 32 4.399303 CGAAAATAAGGTTGGGCTTCTCAT 59.601 41.667 0.00 0.00 0.00 2.90
32 33 3.756434 CGAAAATAAGGTTGGGCTTCTCA 59.244 43.478 0.00 0.00 0.00 3.27
33 34 3.427638 GCGAAAATAAGGTTGGGCTTCTC 60.428 47.826 0.00 0.00 0.00 2.87
34 35 2.492088 GCGAAAATAAGGTTGGGCTTCT 59.508 45.455 0.00 0.00 0.00 2.85
35 36 2.230266 TGCGAAAATAAGGTTGGGCTTC 59.770 45.455 0.00 0.00 0.00 3.86
36 37 2.243810 TGCGAAAATAAGGTTGGGCTT 58.756 42.857 0.00 0.00 0.00 4.35
37 38 1.917872 TGCGAAAATAAGGTTGGGCT 58.082 45.000 0.00 0.00 0.00 5.19
38 39 2.230266 TCTTGCGAAAATAAGGTTGGGC 59.770 45.455 0.00 0.00 0.00 5.36
39 40 4.022329 ACTTCTTGCGAAAATAAGGTTGGG 60.022 41.667 3.59 0.00 0.00 4.12
40 41 4.917415 CACTTCTTGCGAAAATAAGGTTGG 59.083 41.667 3.59 0.00 0.00 3.77
41 42 4.382754 GCACTTCTTGCGAAAATAAGGTTG 59.617 41.667 3.59 0.00 42.79 3.77
42 43 4.546570 GCACTTCTTGCGAAAATAAGGTT 58.453 39.130 3.59 0.00 42.79 3.50
43 44 4.160736 GCACTTCTTGCGAAAATAAGGT 57.839 40.909 3.59 0.00 42.79 3.50
64 65 6.376978 CCTTTTTCTAGAGAAGCACATGTTG 58.623 40.000 0.00 0.00 35.21 3.33
65 66 5.474876 CCCTTTTTCTAGAGAAGCACATGTT 59.525 40.000 0.00 0.00 35.21 2.71
66 67 5.006386 CCCTTTTTCTAGAGAAGCACATGT 58.994 41.667 10.79 0.00 35.21 3.21
67 68 4.397417 CCCCTTTTTCTAGAGAAGCACATG 59.603 45.833 10.79 0.00 35.21 3.21
68 69 4.289672 TCCCCTTTTTCTAGAGAAGCACAT 59.710 41.667 10.79 0.00 35.21 3.21
69 70 3.650942 TCCCCTTTTTCTAGAGAAGCACA 59.349 43.478 10.79 0.00 35.21 4.57
70 71 4.287766 TCCCCTTTTTCTAGAGAAGCAC 57.712 45.455 10.79 0.00 35.21 4.40
71 72 4.993705 TTCCCCTTTTTCTAGAGAAGCA 57.006 40.909 10.79 0.00 35.21 3.91
72 73 6.842437 ATTTTCCCCTTTTTCTAGAGAAGC 57.158 37.500 10.79 0.00 35.21 3.86
73 74 7.888546 TGGTATTTTCCCCTTTTTCTAGAGAAG 59.111 37.037 9.74 9.74 35.21 2.85
74 75 7.668469 GTGGTATTTTCCCCTTTTTCTAGAGAA 59.332 37.037 0.00 0.00 0.00 2.87
75 76 7.173032 GTGGTATTTTCCCCTTTTTCTAGAGA 58.827 38.462 0.00 0.00 0.00 3.10
76 77 6.377429 GGTGGTATTTTCCCCTTTTTCTAGAG 59.623 42.308 0.00 0.00 0.00 2.43
77 78 6.046286 AGGTGGTATTTTCCCCTTTTTCTAGA 59.954 38.462 0.00 0.00 0.00 2.43
78 79 6.253758 AGGTGGTATTTTCCCCTTTTTCTAG 58.746 40.000 0.00 0.00 0.00 2.43
79 80 6.046286 AGAGGTGGTATTTTCCCCTTTTTCTA 59.954 38.462 0.00 0.00 31.55 2.10
80 81 5.084519 GAGGTGGTATTTTCCCCTTTTTCT 58.915 41.667 0.00 0.00 31.55 2.52
81 82 5.047306 CAGAGGTGGTATTTTCCCCTTTTTC 60.047 44.000 0.00 0.00 31.55 2.29
82 83 4.838423 CAGAGGTGGTATTTTCCCCTTTTT 59.162 41.667 0.00 0.00 31.55 1.94
83 84 4.416516 CAGAGGTGGTATTTTCCCCTTTT 58.583 43.478 0.00 0.00 31.55 2.27
84 85 3.817931 GCAGAGGTGGTATTTTCCCCTTT 60.818 47.826 0.00 0.00 31.55 3.11
85 86 2.291605 GCAGAGGTGGTATTTTCCCCTT 60.292 50.000 0.00 0.00 31.55 3.95
86 87 1.285078 GCAGAGGTGGTATTTTCCCCT 59.715 52.381 0.00 0.00 33.18 4.79
87 88 1.285078 AGCAGAGGTGGTATTTTCCCC 59.715 52.381 0.00 0.00 30.68 4.81
88 89 2.808906 AGCAGAGGTGGTATTTTCCC 57.191 50.000 0.00 0.00 30.68 3.97
89 90 3.017442 GGAAGCAGAGGTGGTATTTTCC 58.983 50.000 0.00 0.00 32.75 3.13
90 91 3.017442 GGGAAGCAGAGGTGGTATTTTC 58.983 50.000 0.00 0.00 32.75 2.29
91 92 2.291605 GGGGAAGCAGAGGTGGTATTTT 60.292 50.000 0.00 0.00 32.75 1.82
92 93 1.285078 GGGGAAGCAGAGGTGGTATTT 59.715 52.381 0.00 0.00 32.75 1.40
93 94 0.919710 GGGGAAGCAGAGGTGGTATT 59.080 55.000 0.00 0.00 32.75 1.89
94 95 0.988678 GGGGGAAGCAGAGGTGGTAT 60.989 60.000 0.00 0.00 32.75 2.73
95 96 1.615424 GGGGGAAGCAGAGGTGGTA 60.615 63.158 0.00 0.00 32.75 3.25
96 97 2.936032 GGGGGAAGCAGAGGTGGT 60.936 66.667 0.00 0.00 35.30 4.16
110 111 3.275143 GTTGGTTTTCACTTTTTGGGGG 58.725 45.455 0.00 0.00 0.00 5.40
111 112 3.944087 TGTTGGTTTTCACTTTTTGGGG 58.056 40.909 0.00 0.00 0.00 4.96
112 113 5.000591 AGTTGTTGGTTTTCACTTTTTGGG 58.999 37.500 0.00 0.00 0.00 4.12
113 114 5.468409 ACAGTTGTTGGTTTTCACTTTTTGG 59.532 36.000 0.00 0.00 0.00 3.28
114 115 6.361899 CACAGTTGTTGGTTTTCACTTTTTG 58.638 36.000 0.00 0.00 0.00 2.44
115 116 5.049749 GCACAGTTGTTGGTTTTCACTTTTT 60.050 36.000 0.00 0.00 0.00 1.94
116 117 4.450757 GCACAGTTGTTGGTTTTCACTTTT 59.549 37.500 0.00 0.00 0.00 2.27
117 118 3.993736 GCACAGTTGTTGGTTTTCACTTT 59.006 39.130 0.00 0.00 0.00 2.66
118 119 3.006323 TGCACAGTTGTTGGTTTTCACTT 59.994 39.130 0.00 0.00 0.00 3.16
119 120 2.560542 TGCACAGTTGTTGGTTTTCACT 59.439 40.909 0.00 0.00 0.00 3.41
120 121 2.953020 TGCACAGTTGTTGGTTTTCAC 58.047 42.857 0.00 0.00 0.00 3.18
121 122 3.430098 GGATGCACAGTTGTTGGTTTTCA 60.430 43.478 0.00 0.00 0.00 2.69
122 123 3.123050 GGATGCACAGTTGTTGGTTTTC 58.877 45.455 0.00 0.00 0.00 2.29
123 124 2.481104 CGGATGCACAGTTGTTGGTTTT 60.481 45.455 0.00 0.00 0.00 2.43
124 125 1.066908 CGGATGCACAGTTGTTGGTTT 59.933 47.619 0.00 0.00 0.00 3.27
125 126 0.667993 CGGATGCACAGTTGTTGGTT 59.332 50.000 0.00 0.00 0.00 3.67
126 127 1.172180 CCGGATGCACAGTTGTTGGT 61.172 55.000 0.00 0.00 0.00 3.67
127 128 1.580942 CCGGATGCACAGTTGTTGG 59.419 57.895 0.00 0.00 0.00 3.77
128 129 1.580942 CCCGGATGCACAGTTGTTG 59.419 57.895 0.73 0.00 0.00 3.33
129 130 2.268076 GCCCGGATGCACAGTTGTT 61.268 57.895 0.73 0.00 0.00 2.83
130 131 2.672996 GCCCGGATGCACAGTTGT 60.673 61.111 0.73 0.00 0.00 3.32
131 132 2.360350 AGCCCGGATGCACAGTTG 60.360 61.111 0.73 0.00 0.00 3.16
132 133 2.045926 GAGCCCGGATGCACAGTT 60.046 61.111 0.73 0.00 0.00 3.16
133 134 3.005539 AGAGCCCGGATGCACAGT 61.006 61.111 0.73 0.00 0.00 3.55
134 135 2.513204 CAGAGCCCGGATGCACAG 60.513 66.667 0.73 0.00 0.00 3.66
135 136 2.410322 AAACAGAGCCCGGATGCACA 62.410 55.000 0.73 0.00 0.00 4.57
136 137 1.244019 AAAACAGAGCCCGGATGCAC 61.244 55.000 0.73 0.00 0.00 4.57
137 138 0.539438 AAAAACAGAGCCCGGATGCA 60.539 50.000 0.73 0.00 0.00 3.96
138 139 2.267045 AAAAACAGAGCCCGGATGC 58.733 52.632 0.73 0.00 0.00 3.91
390 391 8.463930 AGATTTTTGAAACTAAGTCCATGTGA 57.536 30.769 0.00 0.00 0.00 3.58
391 392 8.352201 TGAGATTTTTGAAACTAAGTCCATGTG 58.648 33.333 0.00 0.00 0.00 3.21
392 393 8.463930 TGAGATTTTTGAAACTAAGTCCATGT 57.536 30.769 0.00 0.00 0.00 3.21
393 394 9.185192 GTTGAGATTTTTGAAACTAAGTCCATG 57.815 33.333 0.00 0.00 0.00 3.66
394 395 8.912988 TGTTGAGATTTTTGAAACTAAGTCCAT 58.087 29.630 0.00 0.00 0.00 3.41
395 396 8.287439 TGTTGAGATTTTTGAAACTAAGTCCA 57.713 30.769 0.00 0.00 0.00 4.02
420 421 8.511604 ACTATTTTCATCGTTGGATTTCTCAT 57.488 30.769 0.00 0.00 0.00 2.90
518 522 4.882447 GTACTGCATGTACGTCATTTGTC 58.118 43.478 0.00 0.00 41.58 3.18
536 540 4.060900 CAGATGCTGATAAATGGCGTACT 58.939 43.478 0.00 0.00 32.44 2.73
557 561 3.234353 AGTGTCACTGTCCATCTTCTCA 58.766 45.455 4.21 0.00 0.00 3.27
577 581 4.453751 AGCTACTCCGTACCTCTTCTAAG 58.546 47.826 0.00 0.00 0.00 2.18
579 583 3.710677 AGAGCTACTCCGTACCTCTTCTA 59.289 47.826 0.00 0.00 29.79 2.10
581 585 2.921821 AGAGCTACTCCGTACCTCTTC 58.078 52.381 0.00 0.00 29.79 2.87
587 591 6.048509 AGACTAGTTAAGAGCTACTCCGTAC 58.951 44.000 0.00 0.00 0.00 3.67
588 592 6.127225 TGAGACTAGTTAAGAGCTACTCCGTA 60.127 42.308 0.00 0.00 0.00 4.02
589 593 5.101648 AGACTAGTTAAGAGCTACTCCGT 57.898 43.478 0.00 0.00 0.00 4.69
590 594 5.117584 TGAGACTAGTTAAGAGCTACTCCG 58.882 45.833 0.00 0.00 0.00 4.63
591 595 7.519328 CGATTGAGACTAGTTAAGAGCTACTCC 60.519 44.444 0.00 0.00 0.00 3.85
592 596 7.349711 CGATTGAGACTAGTTAAGAGCTACTC 58.650 42.308 0.00 0.00 0.00 2.59
593 597 6.261381 CCGATTGAGACTAGTTAAGAGCTACT 59.739 42.308 0.00 0.00 0.00 2.57
630 634 8.695456 ACAATTGAAATCACTGGTTAAGAGTTT 58.305 29.630 13.59 0.00 0.00 2.66
632 636 7.823745 ACAATTGAAATCACTGGTTAAGAGT 57.176 32.000 13.59 0.00 0.00 3.24
640 644 3.429543 CGGCAAACAATTGAAATCACTGG 59.570 43.478 13.59 0.00 38.94 4.00
652 656 2.351350 CGCTCCTTTTACGGCAAACAAT 60.351 45.455 0.00 0.00 0.00 2.71
653 657 1.002251 CGCTCCTTTTACGGCAAACAA 60.002 47.619 0.00 0.00 0.00 2.83
690 694 2.105766 GGATTGAGCATGGGAGCTTTT 58.894 47.619 0.00 0.00 46.75 2.27
691 695 1.006281 TGGATTGAGCATGGGAGCTTT 59.994 47.619 0.00 0.00 46.75 3.51
692 696 0.627451 TGGATTGAGCATGGGAGCTT 59.373 50.000 0.00 0.00 46.75 3.74
695 699 2.953284 ATCTGGATTGAGCATGGGAG 57.047 50.000 0.00 0.00 0.00 4.30
696 700 2.037641 CGTATCTGGATTGAGCATGGGA 59.962 50.000 0.00 0.00 0.00 4.37
697 701 2.420642 CGTATCTGGATTGAGCATGGG 58.579 52.381 0.00 0.00 0.00 4.00
701 705 1.412710 GACCCGTATCTGGATTGAGCA 59.587 52.381 0.00 0.00 0.00 4.26
702 706 1.412710 TGACCCGTATCTGGATTGAGC 59.587 52.381 0.00 0.00 0.00 4.26
703 707 2.546795 GCTGACCCGTATCTGGATTGAG 60.547 54.545 0.00 0.00 0.00 3.02
704 708 1.412710 GCTGACCCGTATCTGGATTGA 59.587 52.381 0.00 0.00 0.00 2.57
705 709 1.138859 TGCTGACCCGTATCTGGATTG 59.861 52.381 0.00 0.00 0.00 2.67
706 710 1.496060 TGCTGACCCGTATCTGGATT 58.504 50.000 0.00 0.00 0.00 3.01
707 711 1.620819 GATGCTGACCCGTATCTGGAT 59.379 52.381 0.00 0.00 32.50 3.41
708 712 1.040646 GATGCTGACCCGTATCTGGA 58.959 55.000 0.00 0.00 0.00 3.86
709 713 0.752658 TGATGCTGACCCGTATCTGG 59.247 55.000 0.00 0.00 0.00 3.86
711 715 0.390860 GCTGATGCTGACCCGTATCT 59.609 55.000 0.00 0.00 36.03 1.98
712 716 2.906047 GCTGATGCTGACCCGTATC 58.094 57.895 0.00 0.00 36.03 2.24
753 757 4.334552 TCACATTTCTCTAGCCAAATGCA 58.665 39.130 18.86 0.00 41.73 3.96
769 773 2.034879 CAACTCGCGGGCTCACATT 61.035 57.895 5.51 0.00 0.00 2.71
820 833 2.442643 CCATGACATGTGGGGCCC 60.443 66.667 18.17 18.17 32.98 5.80
823 836 0.332632 AACCTCCATGACATGTGGGG 59.667 55.000 21.37 19.23 37.34 4.96
829 842 0.394352 GCCGGAAACCTCCATGACAT 60.394 55.000 5.05 0.00 42.58 3.06
882 895 2.042569 GTGGGGATAGGGACCTTTGTTT 59.957 50.000 0.00 0.00 0.00 2.83
883 896 1.639108 GTGGGGATAGGGACCTTTGTT 59.361 52.381 0.00 0.00 0.00 2.83
884 897 1.203570 AGTGGGGATAGGGACCTTTGT 60.204 52.381 0.00 0.00 0.00 2.83
885 898 1.490910 GAGTGGGGATAGGGACCTTTG 59.509 57.143 0.00 0.00 0.00 2.77
886 899 1.894699 GAGTGGGGATAGGGACCTTT 58.105 55.000 0.00 0.00 0.00 3.11
895 908 0.471211 GGATGGGTCGAGTGGGGATA 60.471 60.000 0.00 0.00 0.00 2.59
900 913 2.187946 GCTGGATGGGTCGAGTGG 59.812 66.667 0.00 0.00 33.22 4.00
984 1004 1.254975 CCATTTTCGGGTGGGGGTTC 61.255 60.000 0.00 0.00 0.00 3.62
988 1008 3.448340 CGCCATTTTCGGGTGGGG 61.448 66.667 0.00 0.00 41.22 4.96
1068 1088 0.809385 GGAGGAAGATCACGTCGTCA 59.191 55.000 0.00 0.00 39.68 4.35
1324 1344 2.143419 CCGGGGAGAAGATGGGGAG 61.143 68.421 0.00 0.00 0.00 4.30
1476 1496 2.585247 GGGCGCATGTACTCGGAC 60.585 66.667 10.83 0.00 0.00 4.79
1609 1629 0.391597 TCAACGTCCTTGGAGGTGAC 59.608 55.000 14.63 0.00 36.53 3.67
1626 1646 0.319040 GATAGCTCCGAATGCGCTCA 60.319 55.000 9.73 0.00 35.33 4.26
1689 1709 0.393808 TTCCAATAGAGGCCGCAACC 60.394 55.000 9.88 0.00 0.00 3.77
1695 1715 0.463833 CACGGGTTCCAATAGAGGCC 60.464 60.000 0.00 0.00 0.00 5.19
1719 1739 0.108615 GCTCTAGCCTTCGCTTGTCA 60.109 55.000 0.00 0.00 45.55 3.58
1800 1820 5.059161 GCATACCTTATCATGTCAAGCTGA 58.941 41.667 0.00 0.00 0.00 4.26
1809 1829 5.178252 CGTCTTCTTGGCATACCTTATCATG 59.822 44.000 0.00 0.00 36.63 3.07
1817 1837 2.418976 GGAAACGTCTTCTTGGCATACC 59.581 50.000 0.00 0.00 0.00 2.73
1971 1991 5.768662 TGAGAAATATACCTGTCCTCTACCG 59.231 44.000 0.00 0.00 0.00 4.02
2004 2027 4.935808 ACAAACTAAACTATCAAGGGAGCG 59.064 41.667 0.00 0.00 0.00 5.03
2060 2085 3.698040 AGGCAAGATGAGCAACTATTTGG 59.302 43.478 0.00 0.00 32.81 3.28
2119 2144 2.093310 CACTCTACAAACAGCATGCTCG 59.907 50.000 19.68 15.84 42.53 5.03
2139 2164 9.984190 GGATTGTAAATTTTGGGTAACTTTACA 57.016 29.630 0.00 8.28 43.89 2.41
2173 2198 3.507622 CAGACTTTTCCCCATCTTGGTTC 59.492 47.826 0.00 0.00 35.17 3.62
2220 2245 4.818546 GGATATGGGTGAGAGTTTGATGTG 59.181 45.833 0.00 0.00 0.00 3.21
2350 2375 6.952773 TTATATACTTCAATGTTGGGTGGC 57.047 37.500 0.00 0.00 0.00 5.01
2415 2441 8.571336 ACTGTAGGAGTTCAGAAAATTGATTTG 58.429 33.333 0.00 0.00 35.84 2.32
2421 2447 5.239525 GTGCACTGTAGGAGTTCAGAAAATT 59.760 40.000 10.32 0.00 35.84 1.82
2423 2449 4.127171 GTGCACTGTAGGAGTTCAGAAAA 58.873 43.478 10.32 0.00 35.84 2.29
2531 2557 5.527582 AGACTGTTAAGTTGTCATGTGTTCC 59.472 40.000 0.00 0.00 36.52 3.62
2532 2558 6.604735 AGACTGTTAAGTTGTCATGTGTTC 57.395 37.500 0.00 0.00 36.52 3.18
2533 2559 6.374333 ACAAGACTGTTAAGTTGTCATGTGTT 59.626 34.615 10.46 0.00 39.89 3.32
2534 2560 5.880332 ACAAGACTGTTAAGTTGTCATGTGT 59.120 36.000 10.46 6.57 39.89 3.72
2535 2561 6.363577 ACAAGACTGTTAAGTTGTCATGTG 57.636 37.500 10.46 6.15 39.89 3.21
2536 2562 6.597672 TGAACAAGACTGTTAAGTTGTCATGT 59.402 34.615 7.19 7.19 45.98 3.21
2537 2563 7.015226 TGAACAAGACTGTTAAGTTGTCATG 57.985 36.000 0.00 0.00 45.98 3.07
2538 2564 7.642669 CATGAACAAGACTGTTAAGTTGTCAT 58.357 34.615 0.00 0.00 45.98 3.06
2539 2565 6.458206 GCATGAACAAGACTGTTAAGTTGTCA 60.458 38.462 0.00 0.00 45.98 3.58
2540 2566 5.909610 GCATGAACAAGACTGTTAAGTTGTC 59.090 40.000 0.00 0.00 45.98 3.18
2541 2567 5.590259 AGCATGAACAAGACTGTTAAGTTGT 59.410 36.000 0.00 0.00 45.98 3.32
2542 2568 6.064846 AGCATGAACAAGACTGTTAAGTTG 57.935 37.500 0.00 0.00 45.98 3.16
2543 2569 6.699575 AAGCATGAACAAGACTGTTAAGTT 57.300 33.333 0.00 0.00 45.98 2.66
2544 2570 7.801716 TTAAGCATGAACAAGACTGTTAAGT 57.198 32.000 0.00 0.00 45.98 2.24
2547 2573 9.448438 ACATATTAAGCATGAACAAGACTGTTA 57.552 29.630 0.00 0.00 45.98 2.41
2697 2729 4.473196 TCCATAAACAGAATGCTACTCCCA 59.527 41.667 0.00 0.00 42.53 4.37
2710 2742 8.627208 AAGCATCATATAAGGTCCATAAACAG 57.373 34.615 0.00 0.00 0.00 3.16
3054 3086 4.032960 ACTGCCCATCATAACAGTTGAA 57.967 40.909 0.00 0.00 40.35 2.69
3126 3158 8.603181 GTTGCAAAAGGCTAAAATATACCAATG 58.397 33.333 0.00 0.00 45.15 2.82
3127 3159 8.317679 TGTTGCAAAAGGCTAAAATATACCAAT 58.682 29.630 0.00 0.00 45.15 3.16
3128 3160 7.671302 TGTTGCAAAAGGCTAAAATATACCAA 58.329 30.769 0.00 0.00 45.15 3.67
3129 3161 7.233389 TGTTGCAAAAGGCTAAAATATACCA 57.767 32.000 0.00 0.00 45.15 3.25
3130 3162 6.756542 CCTGTTGCAAAAGGCTAAAATATACC 59.243 38.462 22.79 0.00 45.15 2.73
3131 3163 6.756542 CCCTGTTGCAAAAGGCTAAAATATAC 59.243 38.462 27.94 0.00 45.15 1.47
3132 3164 6.439058 ACCCTGTTGCAAAAGGCTAAAATATA 59.561 34.615 27.94 0.00 45.15 0.86
3133 3165 5.248248 ACCCTGTTGCAAAAGGCTAAAATAT 59.752 36.000 27.94 4.50 45.15 1.28
3134 3166 4.591072 ACCCTGTTGCAAAAGGCTAAAATA 59.409 37.500 27.94 0.00 45.15 1.40
3135 3167 3.390967 ACCCTGTTGCAAAAGGCTAAAAT 59.609 39.130 27.94 7.41 45.15 1.82
3164 3197 3.125829 GCACACATCACTACAGGACATTG 59.874 47.826 0.00 0.00 0.00 2.82
3265 3298 5.139001 ACTTATAGTTAGGAACGGAGGGAG 58.861 45.833 0.00 0.00 36.23 4.30
3266 3299 5.103771 AGACTTATAGTTAGGAACGGAGGGA 60.104 44.000 0.00 0.00 36.23 4.20
3267 3300 5.139001 AGACTTATAGTTAGGAACGGAGGG 58.861 45.833 0.00 0.00 36.23 4.30
3268 3301 6.712179 AAGACTTATAGTTAGGAACGGAGG 57.288 41.667 0.00 0.00 36.23 4.30
3269 3302 7.545489 ACAAAGACTTATAGTTAGGAACGGAG 58.455 38.462 0.00 0.00 36.23 4.63
3270 3303 7.472334 ACAAAGACTTATAGTTAGGAACGGA 57.528 36.000 0.00 0.00 36.23 4.69
3271 3304 8.680903 TCTACAAAGACTTATAGTTAGGAACGG 58.319 37.037 6.39 0.00 36.23 4.44
3272 3305 9.719279 CTCTACAAAGACTTATAGTTAGGAACG 57.281 37.037 6.39 0.00 36.23 3.95
3280 3313 9.482175 AGTGGAATCTCTACAAAGACTTATAGT 57.518 33.333 6.39 1.32 29.47 2.12
3281 3314 9.743057 CAGTGGAATCTCTACAAAGACTTATAG 57.257 37.037 0.00 0.00 29.47 1.31
3282 3315 9.256228 ACAGTGGAATCTCTACAAAGACTTATA 57.744 33.333 0.00 0.00 29.47 0.98
3283 3316 8.140112 ACAGTGGAATCTCTACAAAGACTTAT 57.860 34.615 0.00 0.00 29.47 1.73
3284 3317 7.540474 ACAGTGGAATCTCTACAAAGACTTA 57.460 36.000 0.00 0.00 29.47 2.24
3285 3318 6.426646 ACAGTGGAATCTCTACAAAGACTT 57.573 37.500 0.00 0.00 29.47 3.01
3286 3319 7.540474 TTACAGTGGAATCTCTACAAAGACT 57.460 36.000 0.00 0.00 29.47 3.24
3287 3320 7.117956 GGTTTACAGTGGAATCTCTACAAAGAC 59.882 40.741 0.00 0.00 29.47 3.01
3288 3321 7.159372 GGTTTACAGTGGAATCTCTACAAAGA 58.841 38.462 0.00 0.00 29.47 2.52
3289 3322 6.934645 TGGTTTACAGTGGAATCTCTACAAAG 59.065 38.462 0.00 0.00 29.47 2.77
3290 3323 6.708949 GTGGTTTACAGTGGAATCTCTACAAA 59.291 38.462 0.00 0.00 29.47 2.83
3291 3324 6.183361 TGTGGTTTACAGTGGAATCTCTACAA 60.183 38.462 0.00 0.00 33.42 2.41
3292 3325 5.305902 TGTGGTTTACAGTGGAATCTCTACA 59.694 40.000 0.00 0.00 33.42 2.74
3293 3326 5.790593 TGTGGTTTACAGTGGAATCTCTAC 58.209 41.667 0.00 0.00 33.42 2.59
3294 3327 6.620877 ATGTGGTTTACAGTGGAATCTCTA 57.379 37.500 0.00 0.00 43.80 2.43
3295 3328 4.974645 TGTGGTTTACAGTGGAATCTCT 57.025 40.909 0.00 0.00 33.42 3.10
3296 3329 5.291128 CGTATGTGGTTTACAGTGGAATCTC 59.709 44.000 0.00 0.00 43.80 2.75
3297 3330 5.175859 CGTATGTGGTTTACAGTGGAATCT 58.824 41.667 0.00 0.00 43.80 2.40
3298 3331 4.331717 CCGTATGTGGTTTACAGTGGAATC 59.668 45.833 0.00 0.00 43.80 2.52
3299 3332 4.020039 TCCGTATGTGGTTTACAGTGGAAT 60.020 41.667 0.00 0.00 43.80 3.01
3300 3333 3.324268 TCCGTATGTGGTTTACAGTGGAA 59.676 43.478 0.00 0.00 43.80 3.53
3301 3334 2.898612 TCCGTATGTGGTTTACAGTGGA 59.101 45.455 0.00 0.00 43.80 4.02
3302 3335 3.322211 TCCGTATGTGGTTTACAGTGG 57.678 47.619 0.00 0.00 43.80 4.00
3303 3336 4.250464 ACATCCGTATGTGGTTTACAGTG 58.750 43.478 0.00 0.00 44.79 3.66
3304 3337 4.546829 ACATCCGTATGTGGTTTACAGT 57.453 40.909 0.00 0.00 44.79 3.55
3305 3338 6.525121 CATACATCCGTATGTGGTTTACAG 57.475 41.667 3.56 0.00 46.70 2.74
3316 3349 9.371136 CTAAAATGCATCTACATACATCCGTAT 57.629 33.333 0.00 0.00 38.96 3.06
3317 3350 8.581578 TCTAAAATGCATCTACATACATCCGTA 58.418 33.333 0.00 0.00 0.00 4.02
3318 3351 7.441836 TCTAAAATGCATCTACATACATCCGT 58.558 34.615 0.00 0.00 0.00 4.69
3319 3352 7.600375 ACTCTAAAATGCATCTACATACATCCG 59.400 37.037 0.00 0.00 0.00 4.18
3320 3353 8.839310 ACTCTAAAATGCATCTACATACATCC 57.161 34.615 0.00 0.00 0.00 3.51
3340 3373 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
3341 3374 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
3342 3375 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
3343 3376 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
3344 3377 6.480320 ACGGAGCAAAATGAGTGAATCTATAC 59.520 38.462 0.00 0.00 0.00 1.47
3345 3378 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
3346 3379 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
3347 3380 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3348 3381 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3349 3382 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3350 3383 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3351 3384 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3352 3385 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3353 3386 4.870426 AGTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3354 3387 5.086104 AGTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3355 3388 6.701841 ACATAGTACATACGGAGCAAAATGAG 59.298 38.462 0.00 0.00 0.00 2.90
3356 3389 6.578944 ACATAGTACATACGGAGCAAAATGA 58.421 36.000 0.00 0.00 0.00 2.57
3357 3390 6.844696 ACATAGTACATACGGAGCAAAATG 57.155 37.500 0.00 0.00 0.00 2.32
3358 3391 7.723324 ACTACATAGTACATACGGAGCAAAAT 58.277 34.615 0.00 0.00 34.13 1.82
3359 3392 7.067859 AGACTACATAGTACATACGGAGCAAAA 59.932 37.037 0.00 0.00 36.50 2.44
3360 3393 6.544931 AGACTACATAGTACATACGGAGCAAA 59.455 38.462 0.00 0.00 36.50 3.68
3361 3394 6.060136 AGACTACATAGTACATACGGAGCAA 58.940 40.000 0.00 0.00 36.50 3.91
3362 3395 5.618236 AGACTACATAGTACATACGGAGCA 58.382 41.667 0.00 0.00 36.50 4.26
3363 3396 7.846644 ATAGACTACATAGTACATACGGAGC 57.153 40.000 0.00 0.00 36.50 4.70
3365 3398 9.866798 CACTATAGACTACATAGTACATACGGA 57.133 37.037 6.78 0.00 37.15 4.69
3366 3399 9.866798 TCACTATAGACTACATAGTACATACGG 57.133 37.037 6.78 0.00 37.15 4.02
3400 3433 8.804204 CCTCCGTTCCTAAATATAAGTCTATGT 58.196 37.037 0.00 0.00 0.00 2.29
3401 3434 8.251721 CCCTCCGTTCCTAAATATAAGTCTATG 58.748 40.741 0.00 0.00 0.00 2.23
3402 3435 8.175431 TCCCTCCGTTCCTAAATATAAGTCTAT 58.825 37.037 0.00 0.00 0.00 1.98
3403 3436 7.529555 TCCCTCCGTTCCTAAATATAAGTCTA 58.470 38.462 0.00 0.00 0.00 2.59
3404 3437 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3405 3438 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3406 3439 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3407 3440 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3408 3441 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
3409 3442 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
3410 3443 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
3411 3444 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3412 3445 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3413 3446 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3414 3447 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3415 3448 3.053095 AGAATGTACTCCCTCCGTTCCTA 60.053 47.826 0.00 0.00 0.00 2.94
3416 3449 2.108970 GAATGTACTCCCTCCGTTCCT 58.891 52.381 0.00 0.00 0.00 3.36
3417 3450 2.108970 AGAATGTACTCCCTCCGTTCC 58.891 52.381 0.00 0.00 0.00 3.62
3418 3451 5.532664 AATAGAATGTACTCCCTCCGTTC 57.467 43.478 0.00 0.00 0.00 3.95
3419 3452 5.189145 ACAAATAGAATGTACTCCCTCCGTT 59.811 40.000 0.00 0.00 0.00 4.44
3420 3453 4.715297 ACAAATAGAATGTACTCCCTCCGT 59.285 41.667 0.00 0.00 0.00 4.69
3421 3454 5.277857 ACAAATAGAATGTACTCCCTCCG 57.722 43.478 0.00 0.00 0.00 4.63
3422 3455 5.612351 GGACAAATAGAATGTACTCCCTCC 58.388 45.833 0.00 0.00 0.00 4.30
3423 3456 5.290386 CGGACAAATAGAATGTACTCCCTC 58.710 45.833 0.00 0.00 28.96 4.30
3424 3457 4.443034 GCGGACAAATAGAATGTACTCCCT 60.443 45.833 0.00 0.00 28.96 4.20
3425 3458 3.808174 GCGGACAAATAGAATGTACTCCC 59.192 47.826 0.00 0.00 28.96 4.30
3426 3459 4.508124 CAGCGGACAAATAGAATGTACTCC 59.492 45.833 0.00 0.00 28.96 3.85
3427 3460 4.025647 GCAGCGGACAAATAGAATGTACTC 60.026 45.833 0.00 0.00 28.96 2.59
3428 3461 3.871594 GCAGCGGACAAATAGAATGTACT 59.128 43.478 0.00 0.00 28.96 2.73
3429 3462 3.621268 TGCAGCGGACAAATAGAATGTAC 59.379 43.478 0.00 0.00 0.00 2.90
3430 3463 3.867857 TGCAGCGGACAAATAGAATGTA 58.132 40.909 0.00 0.00 0.00 2.29
3431 3464 2.710377 TGCAGCGGACAAATAGAATGT 58.290 42.857 0.00 0.00 0.00 2.71
3432 3465 3.763097 TTGCAGCGGACAAATAGAATG 57.237 42.857 0.00 0.00 0.00 2.67
3443 3476 2.230266 GGACCTTTTTAATTGCAGCGGA 59.770 45.455 0.00 0.00 0.00 5.54
3446 3479 3.961480 AGGGACCTTTTTAATTGCAGC 57.039 42.857 0.00 0.00 0.00 5.25
3455 3488 2.903784 GTGGCCATTAAGGGACCTTTTT 59.096 45.455 9.72 0.00 33.79 1.94
3529 3565 7.297614 ACTTATACATCAACCCTTAATGGCAT 58.702 34.615 0.00 0.00 0.00 4.40
3605 3642 9.998106 AGAAGAGCATAAAAGTACTCTTAAACA 57.002 29.630 0.00 0.00 46.65 2.83
3612 3649 8.439286 CAGTTGAAGAAGAGCATAAAAGTACTC 58.561 37.037 0.00 0.00 0.00 2.59
3613 3650 8.150945 TCAGTTGAAGAAGAGCATAAAAGTACT 58.849 33.333 0.00 0.00 0.00 2.73
3632 3669 8.183830 CAAGTAAAATTGCAAACTTCAGTTGA 57.816 30.769 10.57 0.00 38.44 3.18
3662 3699 8.454106 ACACATTCAAAGAGTCACAATATTAGC 58.546 33.333 0.00 0.00 0.00 3.09
3675 3714 6.145535 GTCCTAGCAAAACACATTCAAAGAG 58.854 40.000 0.00 0.00 0.00 2.85
3692 3731 2.336809 CTCGATGGCCGTCCTAGC 59.663 66.667 19.51 0.00 39.75 3.42
3726 3765 2.203126 GCTTCGAGGGAGCCCATG 60.203 66.667 8.53 0.00 38.92 3.66
4046 4089 7.330700 ACTGATTTGAACGTTTGTCAACAAAAT 59.669 29.630 9.73 0.00 46.08 1.82
4068 4112 9.884636 TCCATTATCGAGAAAAGAAATAACTGA 57.115 29.630 0.00 0.00 0.00 3.41
4085 4129 1.800586 CATGGGCTTCGTCCATTATCG 59.199 52.381 0.00 0.00 46.95 2.92
4140 4187 7.201496 GCTGCAGATATGAAAACATTCTTTTGG 60.201 37.037 20.43 0.00 0.00 3.28
4157 4204 4.112634 GTGATTTACGTCAGCTGCAGATA 58.887 43.478 20.43 0.00 0.00 1.98
4171 4218 3.763897 AGAACCATGGGCTTGTGATTTAC 59.236 43.478 18.09 0.00 0.00 2.01
4203 4250 7.963981 TCAATGTTAGTCGATCAGAAATGTTC 58.036 34.615 0.00 0.00 0.00 3.18
4216 4263 6.100004 AGACACTTGGTATCAATGTTAGTCG 58.900 40.000 5.60 0.00 31.75 4.18
4233 4280 5.478407 CCAAAACAAAACCAAGAGACACTT 58.522 37.500 0.00 0.00 39.70 3.16
4286 4335 4.616802 GCAAATGAGTGTTGAACATTACGG 59.383 41.667 0.00 0.00 34.48 4.02
4438 4495 2.228138 TTCGACAGGCACGTAAAACT 57.772 45.000 0.00 0.00 0.00 2.66
4439 4496 2.412325 CCATTCGACAGGCACGTAAAAC 60.412 50.000 0.00 0.00 0.00 2.43
4440 4497 1.801771 CCATTCGACAGGCACGTAAAA 59.198 47.619 0.00 0.00 0.00 1.52
4445 4502 1.593006 GTTATCCATTCGACAGGCACG 59.407 52.381 0.00 0.00 0.00 5.34
4526 4583 6.928492 TGAAAATATTCTTTTGGCCTGTGAAC 59.072 34.615 3.32 0.00 36.48 3.18
4619 4676 3.446507 GCAATGGATGGCAACCAAG 57.553 52.632 20.95 16.40 40.93 3.61
4935 5128 6.469410 TGAGTTAATGACCGTTAAGGACAAT 58.531 36.000 0.00 0.00 46.90 2.71
5277 5475 7.147828 CCAGAATCCCTCTAAGCATCGAATATA 60.148 40.741 0.00 0.00 31.12 0.86
5284 5482 4.285517 TGATCCAGAATCCCTCTAAGCATC 59.714 45.833 0.00 0.00 33.01 3.91
5288 5486 6.553100 ACTTAGTGATCCAGAATCCCTCTAAG 59.447 42.308 0.00 0.00 40.35 2.18
5504 5703 3.577389 GGACAGATTTGGGTCCCTG 57.423 57.895 10.00 0.47 46.29 4.45
5544 5743 1.262640 TTCTAAGTGGGACCGAGGCC 61.263 60.000 0.00 0.00 0.00 5.19
5549 5748 2.551032 GTTTTGGTTCTAAGTGGGACCG 59.449 50.000 0.00 0.00 0.00 4.79
5570 5769 1.234821 ACATAAACTGTGGTGCGTGG 58.765 50.000 0.00 0.00 36.48 4.94
5600 5799 3.897325 TCACTGTAACAAGTGCTACGAG 58.103 45.455 0.00 0.00 45.93 4.18
5603 5802 5.926542 TCTCATTCACTGTAACAAGTGCTAC 59.073 40.000 0.00 0.00 45.93 3.58
5628 5827 1.033746 CCATGACCAGGCATGACACC 61.034 60.000 15.21 0.00 46.64 4.16
5675 5874 4.834496 ACAAGCATCTTCAGGGAATTTTCA 59.166 37.500 0.00 0.00 0.00 2.69
5698 5897 9.860650 ATGCAAACCATCCTACTACAATATAAA 57.139 29.630 0.00 0.00 0.00 1.40
5701 5900 6.207417 GCATGCAAACCATCCTACTACAATAT 59.793 38.462 14.21 0.00 29.71 1.28
5703 5902 4.339247 GCATGCAAACCATCCTACTACAAT 59.661 41.667 14.21 0.00 29.71 2.71
5704 5903 3.694072 GCATGCAAACCATCCTACTACAA 59.306 43.478 14.21 0.00 29.71 2.41
5706 5905 3.278574 TGCATGCAAACCATCCTACTAC 58.721 45.455 20.30 0.00 29.71 2.73
5707 5906 3.643199 TGCATGCAAACCATCCTACTA 57.357 42.857 20.30 0.00 29.71 1.82
5708 5907 2.512692 TGCATGCAAACCATCCTACT 57.487 45.000 20.30 0.00 29.71 2.57
5710 5909 2.737544 ACATGCATGCAAACCATCCTA 58.262 42.857 26.68 0.00 29.71 2.94
5711 5910 1.563924 ACATGCATGCAAACCATCCT 58.436 45.000 26.68 1.67 29.71 3.24
5712 5911 2.389962 AACATGCATGCAAACCATCC 57.610 45.000 26.68 0.00 29.71 3.51
5725 5924 7.872163 TCACTATTTGAAATGACAAACATGC 57.128 32.000 0.00 0.00 41.49 4.06
5748 5947 7.454260 AACCTGAATCTTTGGTCAGTATTTC 57.546 36.000 0.00 0.00 39.76 2.17
5749 5948 7.839680 AAACCTGAATCTTTGGTCAGTATTT 57.160 32.000 0.00 0.00 39.76 1.40
5757 5959 6.777580 AGTCAATGTAAACCTGAATCTTTGGT 59.222 34.615 0.00 0.00 35.29 3.67
5778 5980 5.930837 AAAATGAGGTTCCAAAACAGTCA 57.069 34.783 0.00 0.00 37.10 3.41
5786 5988 5.930837 ACAAGACAAAAATGAGGTTCCAA 57.069 34.783 0.00 0.00 0.00 3.53
5812 6014 2.478292 ACCAATTGGGAGATACGGAGT 58.522 47.619 27.89 0.00 42.94 3.85
5813 6015 4.682778 TTACCAATTGGGAGATACGGAG 57.317 45.455 27.89 0.00 41.15 4.63
5814 6016 4.225492 TGTTTACCAATTGGGAGATACGGA 59.775 41.667 27.89 0.00 41.15 4.69
5823 6025 3.888930 ACACTGTCTGTTTACCAATTGGG 59.111 43.478 27.89 9.49 44.81 4.12
5832 6034 5.483811 TCTGTTGTCAACACTGTCTGTTTA 58.516 37.500 14.48 0.00 41.50 2.01
5833 6035 4.323417 TCTGTTGTCAACACTGTCTGTTT 58.677 39.130 14.48 0.00 41.50 2.83
6044 6251 1.221293 CTGGGAGGCTGCTCTCAAG 59.779 63.158 5.84 10.89 32.86 3.02
6077 6284 1.147191 AGTGGTAGATCGATAGCCCCA 59.853 52.381 0.00 0.00 0.00 4.96
6205 6427 3.741388 CGTTCTTCCTTTCCACTCACAGT 60.741 47.826 0.00 0.00 0.00 3.55
6206 6428 2.802816 CGTTCTTCCTTTCCACTCACAG 59.197 50.000 0.00 0.00 0.00 3.66
6218 6440 0.179040 TGAAAACGGCCGTTCTTCCT 60.179 50.000 41.09 24.38 37.35 3.36
6219 6441 0.237498 CTGAAAACGGCCGTTCTTCC 59.763 55.000 41.09 28.02 37.35 3.46
6220 6442 0.942252 ACTGAAAACGGCCGTTCTTC 59.058 50.000 41.09 36.79 37.35 2.87
6221 6443 0.661020 CACTGAAAACGGCCGTTCTT 59.339 50.000 41.09 32.93 37.35 2.52
6222 6444 1.782028 GCACTGAAAACGGCCGTTCT 61.782 55.000 41.09 31.29 37.35 3.01
6224 6446 1.782028 GAGCACTGAAAACGGCCGTT 61.782 55.000 36.96 36.96 40.45 4.44
6225 6447 2.203153 AGCACTGAAAACGGCCGT 60.203 55.556 28.70 28.70 0.00 5.68
6226 6448 1.507141 AAGAGCACTGAAAACGGCCG 61.507 55.000 26.86 26.86 0.00 6.13
6227 6449 0.668535 AAAGAGCACTGAAAACGGCC 59.331 50.000 0.00 0.00 0.00 6.13
6228 6450 2.385315 GAAAAGAGCACTGAAAACGGC 58.615 47.619 0.00 0.00 0.00 5.68
6229 6451 2.031683 ACGAAAAGAGCACTGAAAACGG 59.968 45.455 0.00 0.00 0.00 4.44
6231 6453 2.783832 GCACGAAAAGAGCACTGAAAAC 59.216 45.455 0.00 0.00 36.42 2.43
6232 6454 2.538737 CGCACGAAAAGAGCACTGAAAA 60.539 45.455 0.00 0.00 36.17 2.29
6234 6456 0.581529 CGCACGAAAAGAGCACTGAA 59.418 50.000 0.00 0.00 36.17 3.02
6235 6457 1.831389 GCGCACGAAAAGAGCACTGA 61.831 55.000 0.30 0.00 36.17 3.41
6236 6458 1.439365 GCGCACGAAAAGAGCACTG 60.439 57.895 0.30 0.00 36.17 3.66
6237 6459 2.939022 GCGCACGAAAAGAGCACT 59.061 55.556 0.30 0.00 36.17 4.40
6238 6460 2.497628 CGCGCACGAAAAGAGCAC 60.498 61.111 8.75 0.00 43.93 4.40
6317 6541 2.677337 GGAAACAAAAGCAAGCAAGCAA 59.323 40.909 3.19 0.00 36.85 3.91
6318 6542 2.278854 GGAAACAAAAGCAAGCAAGCA 58.721 42.857 3.19 0.00 36.85 3.91
6319 6543 1.599071 GGGAAACAAAAGCAAGCAAGC 59.401 47.619 0.00 0.00 0.00 4.01
6320 6544 1.860326 CGGGAAACAAAAGCAAGCAAG 59.140 47.619 0.00 0.00 0.00 4.01
6321 6545 1.478510 TCGGGAAACAAAAGCAAGCAA 59.521 42.857 0.00 0.00 0.00 3.91
6350 6574 1.835483 CTTTCAGCAGCGCGTGAAGT 61.835 55.000 18.15 0.00 34.25 3.01
6377 6601 4.702081 AGCACGGACGCACGACTC 62.702 66.667 6.34 0.00 37.61 3.36
6378 6602 4.280494 AAGCACGGACGCACGACT 62.280 61.111 6.34 0.78 37.61 4.18
6379 6603 3.764049 GAAGCACGGACGCACGAC 61.764 66.667 6.34 0.00 37.61 4.34
6380 6604 4.273257 TGAAGCACGGACGCACGA 62.273 61.111 6.34 0.00 37.61 4.35
6382 6606 3.414700 CCTGAAGCACGGACGCAC 61.415 66.667 0.00 0.00 0.00 5.34
6384 6608 4.681978 ACCCTGAAGCACGGACGC 62.682 66.667 0.00 0.00 0.00 5.19
6385 6609 2.738521 CACCCTGAAGCACGGACG 60.739 66.667 0.00 0.00 0.00 4.79
6387 6611 2.847234 ACCACCCTGAAGCACGGA 60.847 61.111 0.00 0.00 0.00 4.69
6388 6612 2.669569 CACCACCCTGAAGCACGG 60.670 66.667 0.00 0.00 0.00 4.94
6389 6613 2.669569 CCACCACCCTGAAGCACG 60.670 66.667 0.00 0.00 0.00 5.34
6390 6614 2.282462 CCCACCACCCTGAAGCAC 60.282 66.667 0.00 0.00 0.00 4.40
6393 6617 1.228245 CACACCCACCACCCTGAAG 60.228 63.158 0.00 0.00 0.00 3.02
6502 6735 5.745312 ATCCAATCAGTGTACAGTTCTGA 57.255 39.130 14.84 14.84 41.43 3.27
6507 6740 4.292186 AGCAATCCAATCAGTGTACAGT 57.708 40.909 0.00 0.00 0.00 3.55
6614 6864 1.298859 CCTACAAGTTGGTGCGCTCC 61.299 60.000 21.41 21.41 0.00 4.70
6615 6865 0.602905 ACCTACAAGTTGGTGCGCTC 60.603 55.000 9.73 4.47 37.32 5.03
6654 6904 7.230913 CAGTCCCTCCGTTATCCGAATATATAT 59.769 40.741 0.00 0.00 39.56 0.86
6656 6906 5.360144 CAGTCCCTCCGTTATCCGAATATAT 59.640 44.000 0.00 0.00 39.56 0.86
6658 6908 3.510360 CAGTCCCTCCGTTATCCGAATAT 59.490 47.826 0.00 0.00 39.56 1.28
6659 6909 2.889045 CAGTCCCTCCGTTATCCGAATA 59.111 50.000 0.00 0.00 39.56 1.75
6661 6911 1.108776 CAGTCCCTCCGTTATCCGAA 58.891 55.000 0.00 0.00 39.56 4.30
6662 6912 0.033796 ACAGTCCCTCCGTTATCCGA 60.034 55.000 0.00 0.00 39.56 4.55
6664 6914 3.345508 AAAACAGTCCCTCCGTTATCC 57.654 47.619 0.00 0.00 0.00 2.59
6716 6967 7.926674 TGCCATATGTACCATTTCATCTATG 57.073 36.000 1.24 0.00 0.00 2.23
6740 6991 4.732285 CAGTTGAACGACTGCAAACTAT 57.268 40.909 8.92 0.00 40.43 2.12
6765 7020 5.642063 TGTCTAATTTTCACGGAAGATGGTC 59.358 40.000 0.00 0.00 0.00 4.02
6767 7022 6.683974 ATGTCTAATTTTCACGGAAGATGG 57.316 37.500 0.00 0.00 0.00 3.51
6768 7023 7.530010 ACAATGTCTAATTTTCACGGAAGATG 58.470 34.615 0.00 0.00 0.00 2.90
6862 7235 3.147595 TGGATGGGGACGAGAGCG 61.148 66.667 0.00 0.00 44.79 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.