Multiple sequence alignment - TraesCS5D01G422400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G422400 chr5D 100.000 2549 0 0 1 2549 482332737 482330189 0.000000e+00 4708
1 TraesCS5D01G422400 chr5D 96.726 2016 58 8 535 2549 324809259 324811267 0.000000e+00 3350
2 TraesCS5D01G422400 chr5D 96.569 2011 56 10 540 2549 336310999 336309001 0.000000e+00 3319
3 TraesCS5D01G422400 chr5D 97.648 1658 33 5 893 2549 336262945 336264597 0.000000e+00 2841
4 TraesCS5D01G422400 chr5D 97.033 337 9 1 535 871 559994204 559993869 1.320000e-157 566
5 TraesCS5D01G422400 chr7D 95.737 2041 52 19 535 2549 113991310 113993341 0.000000e+00 3254
6 TraesCS5D01G422400 chr2D 95.484 2015 53 11 535 2549 238958886 238960862 0.000000e+00 3182
7 TraesCS5D01G422400 chr2D 97.526 1657 37 2 893 2549 498471338 498469686 0.000000e+00 2830
8 TraesCS5D01G422400 chr3D 94.274 2026 65 11 530 2549 17578805 17576825 0.000000e+00 3051
9 TraesCS5D01G422400 chr6D 97.107 1659 40 3 891 2549 52521425 52519775 0.000000e+00 2791
10 TraesCS5D01G422400 chr6D 97.043 1657 45 4 893 2549 109963533 109965185 0.000000e+00 2785
11 TraesCS5D01G422400 chr6D 95.708 932 32 8 535 1465 277567594 277566670 0.000000e+00 1493
12 TraesCS5D01G422400 chr6D 97.313 335 8 1 535 869 109963212 109963545 3.680000e-158 568
13 TraesCS5D01G422400 chr6A 97.043 1657 46 3 895 2549 57901466 57903121 0.000000e+00 2785
14 TraesCS5D01G422400 chr7A 96.924 1658 47 4 895 2549 701582263 701583919 0.000000e+00 2776
15 TraesCS5D01G422400 chr7B 90.883 1766 112 22 535 2280 486548590 486546854 0.000000e+00 2324
16 TraesCS5D01G422400 chr7B 90.909 418 28 6 531 942 723752395 723751982 1.030000e-153 553
17 TraesCS5D01G422400 chr1D 92.611 406 20 10 535 939 26486138 26486534 2.200000e-160 575
18 TraesCS5D01G422400 chr2A 94.958 357 17 1 535 891 60140641 60140286 2.220000e-155 558
19 TraesCS5D01G422400 chr5B 93.056 288 19 1 247 533 591668778 591668491 1.090000e-113 420
20 TraesCS5D01G422400 chr5B 98.319 119 2 0 2 120 591669044 591668926 2.570000e-50 209
21 TraesCS5D01G422400 chr5B 92.157 102 4 1 162 263 591668925 591668828 9.510000e-30 141
22 TraesCS5D01G422400 chr1B 84.323 421 39 8 522 942 593290599 593290206 1.110000e-103 387


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G422400 chr5D 482330189 482332737 2548 True 4708.000000 4708 100.000000 1 2549 1 chr5D.!!$R2 2548
1 TraesCS5D01G422400 chr5D 324809259 324811267 2008 False 3350.000000 3350 96.726000 535 2549 1 chr5D.!!$F1 2014
2 TraesCS5D01G422400 chr5D 336309001 336310999 1998 True 3319.000000 3319 96.569000 540 2549 1 chr5D.!!$R1 2009
3 TraesCS5D01G422400 chr5D 336262945 336264597 1652 False 2841.000000 2841 97.648000 893 2549 1 chr5D.!!$F2 1656
4 TraesCS5D01G422400 chr7D 113991310 113993341 2031 False 3254.000000 3254 95.737000 535 2549 1 chr7D.!!$F1 2014
5 TraesCS5D01G422400 chr2D 238958886 238960862 1976 False 3182.000000 3182 95.484000 535 2549 1 chr2D.!!$F1 2014
6 TraesCS5D01G422400 chr2D 498469686 498471338 1652 True 2830.000000 2830 97.526000 893 2549 1 chr2D.!!$R1 1656
7 TraesCS5D01G422400 chr3D 17576825 17578805 1980 True 3051.000000 3051 94.274000 530 2549 1 chr3D.!!$R1 2019
8 TraesCS5D01G422400 chr6D 52519775 52521425 1650 True 2791.000000 2791 97.107000 891 2549 1 chr6D.!!$R1 1658
9 TraesCS5D01G422400 chr6D 109963212 109965185 1973 False 1676.500000 2785 97.178000 535 2549 2 chr6D.!!$F1 2014
10 TraesCS5D01G422400 chr6D 277566670 277567594 924 True 1493.000000 1493 95.708000 535 1465 1 chr6D.!!$R2 930
11 TraesCS5D01G422400 chr6A 57901466 57903121 1655 False 2785.000000 2785 97.043000 895 2549 1 chr6A.!!$F1 1654
12 TraesCS5D01G422400 chr7A 701582263 701583919 1656 False 2776.000000 2776 96.924000 895 2549 1 chr7A.!!$F1 1654
13 TraesCS5D01G422400 chr7B 486546854 486548590 1736 True 2324.000000 2324 90.883000 535 2280 1 chr7B.!!$R1 1745
14 TraesCS5D01G422400 chr5B 591668491 591669044 553 True 256.666667 420 94.510667 2 533 3 chr5B.!!$R1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 515 0.029567 CTCCTCCACGCGTCTACATC 59.97 60.0 9.86 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2240 2383 2.990284 TCCTTCCCTACCCATGTCAAAA 59.01 45.455 0.0 0.0 0.0 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 2.224621 CCAACCAATCCATATCCGAGCT 60.225 50.000 0.00 0.00 0.00 4.09
128 129 3.703286 CACATATGCATGACCAAGTGG 57.297 47.619 10.16 0.00 37.10 4.00
129 130 3.281158 CACATATGCATGACCAAGTGGA 58.719 45.455 10.16 0.00 35.88 4.02
130 131 3.695556 CACATATGCATGACCAAGTGGAA 59.304 43.478 10.16 0.00 35.88 3.53
131 132 4.158209 CACATATGCATGACCAAGTGGAAA 59.842 41.667 10.16 0.00 35.88 3.13
132 133 4.400251 ACATATGCATGACCAAGTGGAAAG 59.600 41.667 10.16 0.00 35.88 2.62
133 134 2.363306 TGCATGACCAAGTGGAAAGT 57.637 45.000 3.83 0.00 38.94 2.66
134 135 1.955778 TGCATGACCAAGTGGAAAGTG 59.044 47.619 3.83 0.00 38.94 3.16
135 136 1.956477 GCATGACCAAGTGGAAAGTGT 59.044 47.619 3.83 0.00 38.94 3.55
136 137 2.362077 GCATGACCAAGTGGAAAGTGTT 59.638 45.455 3.83 0.00 38.94 3.32
137 138 3.796504 GCATGACCAAGTGGAAAGTGTTG 60.797 47.826 3.83 0.00 38.94 3.33
138 139 1.748493 TGACCAAGTGGAAAGTGTTGC 59.252 47.619 3.83 0.00 38.94 4.17
139 140 0.738389 ACCAAGTGGAAAGTGTTGCG 59.262 50.000 3.83 0.00 38.94 4.85
140 141 1.021202 CCAAGTGGAAAGTGTTGCGA 58.979 50.000 0.00 0.00 37.39 5.10
141 142 1.608590 CCAAGTGGAAAGTGTTGCGAT 59.391 47.619 0.00 0.00 37.39 4.58
142 143 2.811431 CCAAGTGGAAAGTGTTGCGATA 59.189 45.455 0.00 0.00 37.39 2.92
143 144 3.364964 CCAAGTGGAAAGTGTTGCGATAC 60.365 47.826 0.00 0.00 37.39 2.24
144 145 3.402628 AGTGGAAAGTGTTGCGATACT 57.597 42.857 0.00 0.00 0.00 2.12
145 146 3.740115 AGTGGAAAGTGTTGCGATACTT 58.260 40.909 10.13 10.13 38.66 2.24
146 147 3.746492 AGTGGAAAGTGTTGCGATACTTC 59.254 43.478 15.67 9.63 36.36 3.01
147 148 3.496884 GTGGAAAGTGTTGCGATACTTCA 59.503 43.478 15.67 8.39 36.36 3.02
148 149 4.024387 GTGGAAAGTGTTGCGATACTTCAA 60.024 41.667 15.67 3.25 36.36 2.69
149 150 4.213270 TGGAAAGTGTTGCGATACTTCAAG 59.787 41.667 15.67 0.00 36.36 3.02
150 151 4.378459 GGAAAGTGTTGCGATACTTCAAGG 60.378 45.833 15.67 0.00 36.36 3.61
151 152 2.699954 AGTGTTGCGATACTTCAAGGG 58.300 47.619 0.00 0.00 0.00 3.95
152 153 2.038557 AGTGTTGCGATACTTCAAGGGT 59.961 45.455 0.00 0.00 0.00 4.34
153 154 3.259876 AGTGTTGCGATACTTCAAGGGTA 59.740 43.478 0.00 0.00 0.00 3.69
154 155 3.998341 GTGTTGCGATACTTCAAGGGTAA 59.002 43.478 0.00 0.00 0.00 2.85
155 156 4.453136 GTGTTGCGATACTTCAAGGGTAAA 59.547 41.667 0.00 0.00 0.00 2.01
156 157 5.049267 GTGTTGCGATACTTCAAGGGTAAAA 60.049 40.000 0.00 0.00 0.00 1.52
157 158 5.708230 TGTTGCGATACTTCAAGGGTAAAAT 59.292 36.000 0.00 0.00 0.00 1.82
158 159 5.811399 TGCGATACTTCAAGGGTAAAATG 57.189 39.130 0.00 0.00 0.00 2.32
159 160 4.095782 TGCGATACTTCAAGGGTAAAATGC 59.904 41.667 0.00 0.00 0.00 3.56
160 161 4.095782 GCGATACTTCAAGGGTAAAATGCA 59.904 41.667 0.00 0.00 0.00 3.96
164 165 5.453567 ACTTCAAGGGTAAAATGCAGTTC 57.546 39.130 0.00 0.00 0.00 3.01
183 184 3.085952 TCCTCCCCAATAAAGTTGCAG 57.914 47.619 0.00 0.00 0.00 4.41
226 227 1.682684 GGAACCTGCTCTCGGGAGA 60.683 63.158 18.81 0.00 41.45 3.71
263 264 6.804534 ATTATCACAACAACAACAACAACG 57.195 33.333 0.00 0.00 0.00 4.10
264 265 3.627732 TCACAACAACAACAACAACGT 57.372 38.095 0.00 0.00 0.00 3.99
266 267 3.251245 TCACAACAACAACAACAACGTCT 59.749 39.130 0.00 0.00 0.00 4.18
267 268 3.978217 CACAACAACAACAACAACGTCTT 59.022 39.130 0.00 0.00 0.00 3.01
268 269 4.442733 CACAACAACAACAACAACGTCTTT 59.557 37.500 0.00 0.00 0.00 2.52
270 271 6.306837 CACAACAACAACAACAACGTCTTTAT 59.693 34.615 0.00 0.00 0.00 1.40
271 272 6.864165 ACAACAACAACAACAACGTCTTTATT 59.136 30.769 0.00 0.00 0.00 1.40
272 273 7.382759 ACAACAACAACAACAACGTCTTTATTT 59.617 29.630 0.00 0.00 0.00 1.40
273 274 7.876896 ACAACAACAACAACGTCTTTATTTT 57.123 28.000 0.00 0.00 0.00 1.82
274 275 8.300495 ACAACAACAACAACGTCTTTATTTTT 57.700 26.923 0.00 0.00 0.00 1.94
275 276 8.217778 ACAACAACAACAACGTCTTTATTTTTG 58.782 29.630 0.00 0.00 0.00 2.44
276 277 7.876896 ACAACAACAACGTCTTTATTTTTGT 57.123 28.000 0.00 0.00 31.74 2.83
278 279 7.810759 ACAACAACAACGTCTTTATTTTTGTCT 59.189 29.630 0.00 0.00 30.14 3.41
279 280 7.734538 ACAACAACGTCTTTATTTTTGTCTG 57.265 32.000 0.00 0.00 30.14 3.51
280 281 6.750039 ACAACAACGTCTTTATTTTTGTCTGG 59.250 34.615 0.00 0.00 30.14 3.86
281 282 5.278604 ACAACGTCTTTATTTTTGTCTGGC 58.721 37.500 0.00 0.00 0.00 4.85
282 283 5.067283 ACAACGTCTTTATTTTTGTCTGGCT 59.933 36.000 0.00 0.00 0.00 4.75
283 284 6.261381 ACAACGTCTTTATTTTTGTCTGGCTA 59.739 34.615 0.00 0.00 0.00 3.93
287 288 7.012989 ACGTCTTTATTTTTGTCTGGCTAAACT 59.987 33.333 0.00 0.00 0.00 2.66
288 289 7.860872 CGTCTTTATTTTTGTCTGGCTAAACTT 59.139 33.333 0.00 0.00 0.00 2.66
289 290 8.968242 GTCTTTATTTTTGTCTGGCTAAACTTG 58.032 33.333 0.00 0.00 0.00 3.16
291 292 9.696917 CTTTATTTTTGTCTGGCTAAACTTGAT 57.303 29.630 0.00 0.00 0.00 2.57
295 296 7.672983 TTTTGTCTGGCTAAACTTGATAGAG 57.327 36.000 0.00 0.00 0.00 2.43
297 298 5.967088 TGTCTGGCTAAACTTGATAGAGAC 58.033 41.667 0.00 0.00 30.58 3.36
300 301 5.127845 TCTGGCTAAACTTGATAGAGACCAG 59.872 44.000 0.00 0.00 41.81 4.00
301 302 5.023452 TGGCTAAACTTGATAGAGACCAGA 58.977 41.667 0.00 0.00 0.00 3.86
302 303 5.105310 TGGCTAAACTTGATAGAGACCAGAC 60.105 44.000 0.00 0.00 0.00 3.51
305 306 4.442375 AACTTGATAGAGACCAGACACG 57.558 45.455 0.00 0.00 0.00 4.49
307 308 4.079970 ACTTGATAGAGACCAGACACGAA 58.920 43.478 0.00 0.00 0.00 3.85
309 310 4.703645 TGATAGAGACCAGACACGAAAG 57.296 45.455 0.00 0.00 0.00 2.62
310 311 3.444034 TGATAGAGACCAGACACGAAAGG 59.556 47.826 0.00 0.00 0.00 3.11
311 312 0.969894 AGAGACCAGACACGAAAGGG 59.030 55.000 0.00 0.00 43.28 3.95
313 314 1.343465 GAGACCAGACACGAAAGGGAA 59.657 52.381 0.00 0.00 38.45 3.97
314 315 1.978580 AGACCAGACACGAAAGGGAAT 59.021 47.619 0.00 0.00 38.45 3.01
315 316 2.076863 GACCAGACACGAAAGGGAATG 58.923 52.381 0.00 0.00 38.45 2.67
316 317 1.271379 ACCAGACACGAAAGGGAATGG 60.271 52.381 0.00 0.00 45.09 3.16
317 318 1.453155 CAGACACGAAAGGGAATGGG 58.547 55.000 0.00 0.00 38.45 4.00
318 319 1.064825 AGACACGAAAGGGAATGGGT 58.935 50.000 0.00 0.00 38.45 4.51
319 320 1.003233 AGACACGAAAGGGAATGGGTC 59.997 52.381 0.00 0.00 38.45 4.46
321 322 0.328258 CACGAAAGGGAATGGGTCCT 59.672 55.000 0.00 0.00 46.92 3.85
322 323 0.618981 ACGAAAGGGAATGGGTCCTC 59.381 55.000 0.00 0.00 46.92 3.71
323 324 0.618458 CGAAAGGGAATGGGTCCTCA 59.382 55.000 0.00 0.00 46.92 3.86
324 325 1.679032 CGAAAGGGAATGGGTCCTCAC 60.679 57.143 0.00 0.00 46.92 3.51
325 326 0.328258 AAAGGGAATGGGTCCTCACG 59.672 55.000 0.00 0.00 46.92 4.35
326 327 0.546747 AAGGGAATGGGTCCTCACGA 60.547 55.000 0.00 0.00 46.92 4.35
327 328 0.546747 AGGGAATGGGTCCTCACGAA 60.547 55.000 0.00 0.00 46.92 3.85
328 329 0.326927 GGGAATGGGTCCTCACGAAA 59.673 55.000 0.00 0.00 46.92 3.46
329 330 1.679032 GGGAATGGGTCCTCACGAAAG 60.679 57.143 0.00 0.00 46.92 2.62
330 331 1.003233 GGAATGGGTCCTCACGAAAGT 59.997 52.381 0.00 0.00 45.10 2.66
331 332 2.552373 GGAATGGGTCCTCACGAAAGTT 60.552 50.000 0.00 0.00 42.74 2.66
332 333 2.474410 ATGGGTCCTCACGAAAGTTC 57.526 50.000 0.00 0.00 46.40 3.01
343 344 2.178474 CGAAAGTTCGCCATGGAATG 57.822 50.000 18.40 4.09 44.26 2.67
344 345 1.468520 CGAAAGTTCGCCATGGAATGT 59.531 47.619 18.40 0.00 44.26 2.71
345 346 2.728846 CGAAAGTTCGCCATGGAATGTG 60.729 50.000 18.40 0.00 44.26 3.21
346 347 2.198827 AAGTTCGCCATGGAATGTGA 57.801 45.000 18.40 1.16 44.81 3.58
347 348 1.742761 AGTTCGCCATGGAATGTGAG 58.257 50.000 18.40 0.00 44.81 3.51
348 349 1.003580 AGTTCGCCATGGAATGTGAGT 59.996 47.619 18.40 0.00 44.81 3.41
349 350 2.236146 AGTTCGCCATGGAATGTGAGTA 59.764 45.455 18.40 0.00 44.81 2.59
350 351 3.006940 GTTCGCCATGGAATGTGAGTAA 58.993 45.455 18.40 0.00 44.81 2.24
351 352 2.627945 TCGCCATGGAATGTGAGTAAC 58.372 47.619 18.40 0.00 44.81 2.50
352 353 1.670811 CGCCATGGAATGTGAGTAACC 59.329 52.381 18.40 0.00 44.81 2.85
353 354 1.670811 GCCATGGAATGTGAGTAACCG 59.329 52.381 18.40 0.00 44.81 4.44
354 355 2.679639 GCCATGGAATGTGAGTAACCGA 60.680 50.000 18.40 0.00 44.81 4.69
355 356 3.605634 CCATGGAATGTGAGTAACCGAA 58.394 45.455 5.56 0.00 44.81 4.30
356 357 4.006989 CCATGGAATGTGAGTAACCGAAA 58.993 43.478 5.56 0.00 44.81 3.46
357 358 4.640201 CCATGGAATGTGAGTAACCGAAAT 59.360 41.667 5.56 0.00 44.81 2.17
358 359 5.125417 CCATGGAATGTGAGTAACCGAAATT 59.875 40.000 5.56 0.00 44.81 1.82
359 360 5.621197 TGGAATGTGAGTAACCGAAATTG 57.379 39.130 0.00 0.00 0.00 2.32
360 361 5.309638 TGGAATGTGAGTAACCGAAATTGA 58.690 37.500 0.00 0.00 0.00 2.57
361 362 5.943416 TGGAATGTGAGTAACCGAAATTGAT 59.057 36.000 0.00 0.00 0.00 2.57
362 363 6.128035 TGGAATGTGAGTAACCGAAATTGATG 60.128 38.462 0.00 0.00 0.00 3.07
363 364 5.818136 ATGTGAGTAACCGAAATTGATGG 57.182 39.130 0.00 0.00 0.00 3.51
364 365 4.006989 TGTGAGTAACCGAAATTGATGGG 58.993 43.478 0.00 0.00 0.00 4.00
365 366 3.377172 GTGAGTAACCGAAATTGATGGGG 59.623 47.826 0.00 0.00 0.00 4.96
366 367 3.264706 TGAGTAACCGAAATTGATGGGGA 59.735 43.478 0.00 0.00 0.00 4.81
367 368 3.877508 GAGTAACCGAAATTGATGGGGAG 59.122 47.826 0.00 0.00 0.00 4.30
368 369 3.521937 AGTAACCGAAATTGATGGGGAGA 59.478 43.478 0.00 0.00 0.00 3.71
369 370 3.449746 AACCGAAATTGATGGGGAGAA 57.550 42.857 0.00 0.00 0.00 2.87
370 371 3.004752 ACCGAAATTGATGGGGAGAAG 57.995 47.619 0.00 0.00 0.00 2.85
371 372 2.576191 ACCGAAATTGATGGGGAGAAGA 59.424 45.455 0.00 0.00 0.00 2.87
372 373 3.203040 ACCGAAATTGATGGGGAGAAGAT 59.797 43.478 0.00 0.00 0.00 2.40
373 374 3.567164 CCGAAATTGATGGGGAGAAGATG 59.433 47.826 0.00 0.00 0.00 2.90
374 375 3.567164 CGAAATTGATGGGGAGAAGATGG 59.433 47.826 0.00 0.00 0.00 3.51
375 376 4.540715 GAAATTGATGGGGAGAAGATGGT 58.459 43.478 0.00 0.00 0.00 3.55
376 377 3.589951 ATTGATGGGGAGAAGATGGTG 57.410 47.619 0.00 0.00 0.00 4.17
377 378 1.216064 TGATGGGGAGAAGATGGTGG 58.784 55.000 0.00 0.00 0.00 4.61
378 379 1.274358 TGATGGGGAGAAGATGGTGGA 60.274 52.381 0.00 0.00 0.00 4.02
379 380 1.419387 GATGGGGAGAAGATGGTGGAG 59.581 57.143 0.00 0.00 0.00 3.86
380 381 0.417437 TGGGGAGAAGATGGTGGAGA 59.583 55.000 0.00 0.00 0.00 3.71
381 382 1.010046 TGGGGAGAAGATGGTGGAGAT 59.990 52.381 0.00 0.00 0.00 2.75
382 383 2.250008 TGGGGAGAAGATGGTGGAGATA 59.750 50.000 0.00 0.00 0.00 1.98
383 384 3.116199 TGGGGAGAAGATGGTGGAGATAT 60.116 47.826 0.00 0.00 0.00 1.63
384 385 3.517500 GGGGAGAAGATGGTGGAGATATC 59.482 52.174 0.00 0.00 0.00 1.63
385 386 4.424842 GGGAGAAGATGGTGGAGATATCT 58.575 47.826 4.47 4.47 32.80 1.98
386 387 5.519263 GGGGAGAAGATGGTGGAGATATCTA 60.519 48.000 4.89 0.00 31.30 1.98
387 388 6.019748 GGGAGAAGATGGTGGAGATATCTAA 58.980 44.000 4.89 0.00 31.30 2.10
388 389 6.154363 GGGAGAAGATGGTGGAGATATCTAAG 59.846 46.154 4.89 0.00 31.30 2.18
389 390 6.723977 GGAGAAGATGGTGGAGATATCTAAGT 59.276 42.308 4.89 0.00 31.30 2.24
390 391 7.309744 GGAGAAGATGGTGGAGATATCTAAGTG 60.310 44.444 4.89 0.00 31.30 3.16
391 392 7.301420 AGAAGATGGTGGAGATATCTAAGTGA 58.699 38.462 4.89 0.00 31.30 3.41
392 393 6.909550 AGATGGTGGAGATATCTAAGTGAC 57.090 41.667 4.89 0.00 29.82 3.67
393 394 6.619464 AGATGGTGGAGATATCTAAGTGACT 58.381 40.000 4.89 0.00 29.82 3.41
394 395 7.760607 AGATGGTGGAGATATCTAAGTGACTA 58.239 38.462 4.89 0.00 29.82 2.59
395 396 8.397957 AGATGGTGGAGATATCTAAGTGACTAT 58.602 37.037 4.89 2.04 29.82 2.12
396 397 7.767250 TGGTGGAGATATCTAAGTGACTATG 57.233 40.000 4.89 0.00 0.00 2.23
397 398 7.526918 TGGTGGAGATATCTAAGTGACTATGA 58.473 38.462 4.89 0.00 0.00 2.15
398 399 7.667635 TGGTGGAGATATCTAAGTGACTATGAG 59.332 40.741 4.89 0.00 0.00 2.90
399 400 7.885922 GGTGGAGATATCTAAGTGACTATGAGA 59.114 40.741 4.89 0.00 0.00 3.27
400 401 8.946085 GTGGAGATATCTAAGTGACTATGAGAG 58.054 40.741 4.89 0.00 0.00 3.20
401 402 7.609918 TGGAGATATCTAAGTGACTATGAGAGC 59.390 40.741 4.89 0.00 0.00 4.09
402 403 7.609918 GGAGATATCTAAGTGACTATGAGAGCA 59.390 40.741 4.89 0.00 0.00 4.26
403 404 8.335532 AGATATCTAAGTGACTATGAGAGCAC 57.664 38.462 2.53 0.00 34.36 4.40
404 405 7.941790 AGATATCTAAGTGACTATGAGAGCACA 59.058 37.037 2.53 0.00 35.72 4.57
405 406 6.975196 ATCTAAGTGACTATGAGAGCACAT 57.025 37.500 0.00 0.00 35.72 3.21
406 407 6.141560 TCTAAGTGACTATGAGAGCACATG 57.858 41.667 0.00 0.00 35.72 3.21
407 408 3.815856 AGTGACTATGAGAGCACATGG 57.184 47.619 0.00 0.00 35.72 3.66
408 409 3.102972 AGTGACTATGAGAGCACATGGT 58.897 45.455 0.00 7.11 42.82 3.55
409 410 3.118847 AGTGACTATGAGAGCACATGGTG 60.119 47.826 10.88 0.00 40.88 4.17
410 411 2.169144 TGACTATGAGAGCACATGGTGG 59.831 50.000 10.88 0.00 40.88 4.61
411 412 2.432146 GACTATGAGAGCACATGGTGGA 59.568 50.000 10.88 0.00 40.88 4.02
412 413 2.840038 ACTATGAGAGCACATGGTGGAA 59.160 45.455 0.00 0.00 39.71 3.53
413 414 2.885135 ATGAGAGCACATGGTGGAAA 57.115 45.000 0.00 0.00 33.64 3.13
414 415 2.189594 TGAGAGCACATGGTGGAAAG 57.810 50.000 0.00 0.00 33.64 2.62
415 416 1.271543 TGAGAGCACATGGTGGAAAGG 60.272 52.381 0.00 0.00 33.64 3.11
416 417 0.038744 AGAGCACATGGTGGAAAGGG 59.961 55.000 0.00 0.00 33.64 3.95
417 418 0.967380 GAGCACATGGTGGAAAGGGG 60.967 60.000 0.00 0.00 33.64 4.79
418 419 1.984026 GCACATGGTGGAAAGGGGG 60.984 63.158 0.00 0.00 33.64 5.40
419 420 1.773635 CACATGGTGGAAAGGGGGA 59.226 57.895 0.00 0.00 0.00 4.81
420 421 0.323725 CACATGGTGGAAAGGGGGAG 60.324 60.000 0.00 0.00 0.00 4.30
421 422 1.307647 CATGGTGGAAAGGGGGAGG 59.692 63.158 0.00 0.00 0.00 4.30
422 423 1.165782 ATGGTGGAAAGGGGGAGGA 59.834 57.895 0.00 0.00 0.00 3.71
423 424 0.479589 ATGGTGGAAAGGGGGAGGAA 60.480 55.000 0.00 0.00 0.00 3.36
424 425 1.140134 TGGTGGAAAGGGGGAGGAAG 61.140 60.000 0.00 0.00 0.00 3.46
425 426 0.845102 GGTGGAAAGGGGGAGGAAGA 60.845 60.000 0.00 0.00 0.00 2.87
426 427 0.328592 GTGGAAAGGGGGAGGAAGAC 59.671 60.000 0.00 0.00 0.00 3.01
427 428 1.198759 TGGAAAGGGGGAGGAAGACG 61.199 60.000 0.00 0.00 0.00 4.18
428 429 0.908180 GGAAAGGGGGAGGAAGACGA 60.908 60.000 0.00 0.00 0.00 4.20
429 430 0.981943 GAAAGGGGGAGGAAGACGAA 59.018 55.000 0.00 0.00 0.00 3.85
430 431 0.984995 AAAGGGGGAGGAAGACGAAG 59.015 55.000 0.00 0.00 0.00 3.79
431 432 1.554583 AAGGGGGAGGAAGACGAAGC 61.555 60.000 0.00 0.00 0.00 3.86
432 433 2.184579 GGGGAGGAAGACGAAGCG 59.815 66.667 0.00 0.00 0.00 4.68
433 434 2.348888 GGGGAGGAAGACGAAGCGA 61.349 63.158 0.00 0.00 0.00 4.93
434 435 1.153804 GGGAGGAAGACGAAGCGAC 60.154 63.158 0.00 0.00 0.00 5.19
435 436 1.153804 GGAGGAAGACGAAGCGACC 60.154 63.158 0.00 0.00 0.00 4.79
436 437 1.585006 GAGGAAGACGAAGCGACCA 59.415 57.895 0.00 0.00 0.00 4.02
437 438 0.456995 GAGGAAGACGAAGCGACCAG 60.457 60.000 0.00 0.00 0.00 4.00
438 439 1.446272 GGAAGACGAAGCGACCAGG 60.446 63.158 0.00 0.00 0.00 4.45
439 440 1.446272 GAAGACGAAGCGACCAGGG 60.446 63.158 0.00 0.00 0.00 4.45
440 441 2.156051 GAAGACGAAGCGACCAGGGT 62.156 60.000 0.00 0.00 0.00 4.34
441 442 2.432628 GACGAAGCGACCAGGGTG 60.433 66.667 0.00 0.00 0.00 4.61
442 443 3.222354 GACGAAGCGACCAGGGTGT 62.222 63.158 0.00 0.00 0.00 4.16
443 444 2.738521 CGAAGCGACCAGGGTGTG 60.739 66.667 0.00 0.00 0.00 3.82
444 445 3.050275 GAAGCGACCAGGGTGTGC 61.050 66.667 0.00 0.00 0.00 4.57
445 446 3.537206 GAAGCGACCAGGGTGTGCT 62.537 63.158 8.55 8.55 37.83 4.40
446 447 3.120086 AAGCGACCAGGGTGTGCTT 62.120 57.895 17.30 17.30 39.80 3.91
447 448 1.764571 AAGCGACCAGGGTGTGCTTA 61.765 55.000 20.10 0.00 41.51 3.09
448 449 1.078426 GCGACCAGGGTGTGCTTAT 60.078 57.895 0.00 0.00 0.00 1.73
449 450 1.369091 GCGACCAGGGTGTGCTTATG 61.369 60.000 0.00 0.00 0.00 1.90
450 451 0.036388 CGACCAGGGTGTGCTTATGT 60.036 55.000 0.00 0.00 0.00 2.29
451 452 1.453155 GACCAGGGTGTGCTTATGTG 58.547 55.000 0.00 0.00 0.00 3.21
452 453 0.038166 ACCAGGGTGTGCTTATGTGG 59.962 55.000 0.00 0.00 0.00 4.17
453 454 1.315257 CCAGGGTGTGCTTATGTGGC 61.315 60.000 0.00 0.00 0.00 5.01
454 455 0.608856 CAGGGTGTGCTTATGTGGCA 60.609 55.000 0.00 0.00 37.36 4.92
455 456 0.332632 AGGGTGTGCTTATGTGGCAT 59.667 50.000 0.00 0.00 41.86 4.40
456 457 1.185315 GGGTGTGCTTATGTGGCATT 58.815 50.000 0.00 0.00 41.86 3.56
457 458 1.550072 GGGTGTGCTTATGTGGCATTT 59.450 47.619 0.00 0.00 41.86 2.32
458 459 2.417243 GGGTGTGCTTATGTGGCATTTC 60.417 50.000 0.00 0.00 41.86 2.17
459 460 2.493278 GGTGTGCTTATGTGGCATTTCT 59.507 45.455 0.00 0.00 41.86 2.52
460 461 3.694072 GGTGTGCTTATGTGGCATTTCTA 59.306 43.478 0.00 0.00 41.86 2.10
461 462 4.438744 GGTGTGCTTATGTGGCATTTCTAC 60.439 45.833 0.00 0.00 41.86 2.59
462 463 4.396166 GTGTGCTTATGTGGCATTTCTACT 59.604 41.667 0.00 0.00 41.86 2.57
463 464 4.635765 TGTGCTTATGTGGCATTTCTACTC 59.364 41.667 0.00 0.00 41.86 2.59
464 465 4.878397 GTGCTTATGTGGCATTTCTACTCT 59.122 41.667 0.00 0.00 41.86 3.24
465 466 5.355350 GTGCTTATGTGGCATTTCTACTCTT 59.645 40.000 0.00 0.00 41.86 2.85
466 467 6.538742 GTGCTTATGTGGCATTTCTACTCTTA 59.461 38.462 0.00 0.00 41.86 2.10
467 468 6.538742 TGCTTATGTGGCATTTCTACTCTTAC 59.461 38.462 0.00 0.00 34.56 2.34
468 469 6.763610 GCTTATGTGGCATTTCTACTCTTACT 59.236 38.462 0.00 0.00 0.00 2.24
469 470 7.254590 GCTTATGTGGCATTTCTACTCTTACTG 60.255 40.741 0.00 0.00 0.00 2.74
470 471 5.738619 TGTGGCATTTCTACTCTTACTGA 57.261 39.130 0.00 0.00 0.00 3.41
471 472 6.109156 TGTGGCATTTCTACTCTTACTGAA 57.891 37.500 0.00 0.00 0.00 3.02
472 473 6.711277 TGTGGCATTTCTACTCTTACTGAAT 58.289 36.000 0.00 0.00 0.00 2.57
473 474 7.168219 TGTGGCATTTCTACTCTTACTGAATT 58.832 34.615 0.00 0.00 0.00 2.17
474 475 7.119699 TGTGGCATTTCTACTCTTACTGAATTG 59.880 37.037 0.00 0.00 0.00 2.32
475 476 6.599244 TGGCATTTCTACTCTTACTGAATTGG 59.401 38.462 0.00 0.00 0.00 3.16
476 477 6.599638 GGCATTTCTACTCTTACTGAATTGGT 59.400 38.462 0.00 0.00 0.00 3.67
477 478 7.121315 GGCATTTCTACTCTTACTGAATTGGTT 59.879 37.037 0.00 0.00 0.00 3.67
478 479 9.162764 GCATTTCTACTCTTACTGAATTGGTTA 57.837 33.333 0.00 0.00 0.00 2.85
495 496 3.388350 TGGTTAAATTCCCAACACCAACC 59.612 43.478 0.00 0.00 35.76 3.77
496 497 3.644265 GGTTAAATTCCCAACACCAACCT 59.356 43.478 0.00 0.00 33.10 3.50
497 498 4.262292 GGTTAAATTCCCAACACCAACCTC 60.262 45.833 0.00 0.00 33.10 3.85
498 499 2.009681 AATTCCCAACACCAACCTCC 57.990 50.000 0.00 0.00 0.00 4.30
499 500 1.158007 ATTCCCAACACCAACCTCCT 58.842 50.000 0.00 0.00 0.00 3.69
500 501 0.476771 TTCCCAACACCAACCTCCTC 59.523 55.000 0.00 0.00 0.00 3.71
501 502 1.074951 CCCAACACCAACCTCCTCC 59.925 63.158 0.00 0.00 0.00 4.30
502 503 1.715019 CCCAACACCAACCTCCTCCA 61.715 60.000 0.00 0.00 0.00 3.86
503 504 0.537371 CCAACACCAACCTCCTCCAC 60.537 60.000 0.00 0.00 0.00 4.02
504 505 0.884704 CAACACCAACCTCCTCCACG 60.885 60.000 0.00 0.00 0.00 4.94
505 506 2.358737 CACCAACCTCCTCCACGC 60.359 66.667 0.00 0.00 0.00 5.34
506 507 4.003788 ACCAACCTCCTCCACGCG 62.004 66.667 3.53 3.53 0.00 6.01
507 508 4.003788 CCAACCTCCTCCACGCGT 62.004 66.667 5.58 5.58 0.00 6.01
508 509 2.432628 CAACCTCCTCCACGCGTC 60.433 66.667 9.86 0.00 0.00 5.19
509 510 2.600769 AACCTCCTCCACGCGTCT 60.601 61.111 9.86 0.00 0.00 4.18
510 511 1.303888 AACCTCCTCCACGCGTCTA 60.304 57.895 9.86 0.00 0.00 2.59
511 512 1.593296 AACCTCCTCCACGCGTCTAC 61.593 60.000 9.86 0.00 0.00 2.59
512 513 2.044555 CCTCCTCCACGCGTCTACA 61.045 63.158 9.86 0.00 0.00 2.74
513 514 1.384989 CCTCCTCCACGCGTCTACAT 61.385 60.000 9.86 0.00 0.00 2.29
514 515 0.029567 CTCCTCCACGCGTCTACATC 59.970 60.000 9.86 0.00 0.00 3.06
515 516 0.393944 TCCTCCACGCGTCTACATCT 60.394 55.000 9.86 0.00 0.00 2.90
516 517 0.029567 CCTCCACGCGTCTACATCTC 59.970 60.000 9.86 0.00 0.00 2.75
517 518 0.316278 CTCCACGCGTCTACATCTCG 60.316 60.000 9.86 0.00 0.00 4.04
518 519 0.741927 TCCACGCGTCTACATCTCGA 60.742 55.000 9.86 0.00 0.00 4.04
519 520 0.308068 CCACGCGTCTACATCTCGAT 59.692 55.000 9.86 0.00 0.00 3.59
520 521 1.389853 CACGCGTCTACATCTCGATG 58.610 55.000 9.86 5.40 44.15 3.84
521 522 1.003866 CACGCGTCTACATCTCGATGA 60.004 52.381 9.86 0.00 41.20 2.92
522 523 1.003759 ACGCGTCTACATCTCGATGAC 60.004 52.381 5.58 1.29 41.20 3.06
523 524 1.003866 CGCGTCTACATCTCGATGACA 60.004 52.381 13.45 0.86 41.20 3.58
524 525 2.538939 CGCGTCTACATCTCGATGACAA 60.539 50.000 13.45 0.00 41.20 3.18
525 526 3.633235 GCGTCTACATCTCGATGACAAT 58.367 45.455 13.45 0.00 41.20 2.71
526 527 4.045104 GCGTCTACATCTCGATGACAATT 58.955 43.478 13.45 0.00 41.20 2.32
527 528 4.085363 GCGTCTACATCTCGATGACAATTG 60.085 45.833 13.45 3.24 41.20 2.32
528 529 4.085363 CGTCTACATCTCGATGACAATTGC 60.085 45.833 13.45 0.00 41.20 3.56
529 530 4.805719 GTCTACATCTCGATGACAATTGCA 59.194 41.667 13.45 5.18 41.20 4.08
530 531 5.291858 GTCTACATCTCGATGACAATTGCAA 59.708 40.000 13.45 0.00 41.20 4.08
531 532 5.874261 TCTACATCTCGATGACAATTGCAAA 59.126 36.000 13.45 0.00 41.20 3.68
532 533 5.375417 ACATCTCGATGACAATTGCAAAA 57.625 34.783 13.45 0.00 41.20 2.44
533 534 5.396484 ACATCTCGATGACAATTGCAAAAG 58.604 37.500 13.45 0.94 41.20 2.27
551 552 9.579932 TTGCAAAAGGGGTTAATTATCATTTTT 57.420 25.926 0.00 0.00 0.00 1.94
659 660 1.666011 GTGAACTCAGCCGTCTCCA 59.334 57.895 0.00 0.00 0.00 3.86
1117 1215 1.348064 TCGGAGGGTTTCTCACACAT 58.652 50.000 0.00 0.00 44.19 3.21
1338 1436 3.725459 CGCATGCTGCCACGAACA 61.725 61.111 17.13 0.00 41.12 3.18
1466 1583 5.288543 CTTGAAGATCAAGCACTACCAAC 57.711 43.478 7.13 0.00 46.03 3.77
1533 1650 6.017026 TCGCACTGGTTGTAATGTTGAAAATA 60.017 34.615 0.00 0.00 0.00 1.40
1567 1684 7.232127 AGGCATGAATTATGGAGGAATTTGTAG 59.768 37.037 0.00 0.00 37.26 2.74
2240 2383 1.069823 CGCTAGGACAGATGGCAAGAT 59.930 52.381 0.00 0.00 0.00 2.40
2268 2411 2.771688 TGGGTAGGGAAGGAAGGTATG 58.228 52.381 0.00 0.00 0.00 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.969923 CCCTTGCCATTTCAAAGGACA 59.030 47.619 2.25 0.00 30.84 4.02
120 121 0.738389 CGCAACACTTTCCACTTGGT 59.262 50.000 0.00 0.00 36.34 3.67
121 122 1.021202 TCGCAACACTTTCCACTTGG 58.979 50.000 0.00 0.00 0.00 3.61
122 123 3.498397 AGTATCGCAACACTTTCCACTTG 59.502 43.478 0.00 0.00 0.00 3.16
123 124 3.740115 AGTATCGCAACACTTTCCACTT 58.260 40.909 0.00 0.00 0.00 3.16
124 125 3.402628 AGTATCGCAACACTTTCCACT 57.597 42.857 0.00 0.00 0.00 4.00
125 126 3.496884 TGAAGTATCGCAACACTTTCCAC 59.503 43.478 0.00 0.00 35.17 4.02
126 127 3.734463 TGAAGTATCGCAACACTTTCCA 58.266 40.909 0.00 0.00 35.17 3.53
127 128 4.378459 CCTTGAAGTATCGCAACACTTTCC 60.378 45.833 0.00 0.00 35.17 3.13
128 129 4.378459 CCCTTGAAGTATCGCAACACTTTC 60.378 45.833 0.00 0.00 35.17 2.62
129 130 3.502211 CCCTTGAAGTATCGCAACACTTT 59.498 43.478 0.00 0.00 35.17 2.66
130 131 3.074412 CCCTTGAAGTATCGCAACACTT 58.926 45.455 0.00 0.00 37.69 3.16
131 132 2.038557 ACCCTTGAAGTATCGCAACACT 59.961 45.455 0.00 0.00 0.00 3.55
132 133 2.423577 ACCCTTGAAGTATCGCAACAC 58.576 47.619 0.00 0.00 0.00 3.32
133 134 2.851263 ACCCTTGAAGTATCGCAACA 57.149 45.000 0.00 0.00 0.00 3.33
134 135 5.616488 TTTTACCCTTGAAGTATCGCAAC 57.384 39.130 0.00 0.00 0.00 4.17
135 136 5.392595 GCATTTTACCCTTGAAGTATCGCAA 60.393 40.000 0.00 0.00 0.00 4.85
136 137 4.095782 GCATTTTACCCTTGAAGTATCGCA 59.904 41.667 0.00 0.00 0.00 5.10
137 138 4.095782 TGCATTTTACCCTTGAAGTATCGC 59.904 41.667 0.00 0.00 0.00 4.58
138 139 5.354234 ACTGCATTTTACCCTTGAAGTATCG 59.646 40.000 0.00 0.00 27.12 2.92
139 140 6.759497 ACTGCATTTTACCCTTGAAGTATC 57.241 37.500 0.00 0.00 27.12 2.24
140 141 6.152831 GGAACTGCATTTTACCCTTGAAGTAT 59.847 38.462 0.00 0.00 28.92 2.12
141 142 5.475564 GGAACTGCATTTTACCCTTGAAGTA 59.524 40.000 0.00 0.00 28.92 2.24
142 143 4.280929 GGAACTGCATTTTACCCTTGAAGT 59.719 41.667 0.00 0.00 30.26 3.01
143 144 4.524328 AGGAACTGCATTTTACCCTTGAAG 59.476 41.667 0.00 0.00 37.18 3.02
144 145 4.479158 AGGAACTGCATTTTACCCTTGAA 58.521 39.130 0.00 0.00 37.18 2.69
145 146 4.079253 GAGGAACTGCATTTTACCCTTGA 58.921 43.478 0.00 0.00 41.55 3.02
146 147 4.440839 GAGGAACTGCATTTTACCCTTG 57.559 45.455 0.00 0.00 41.55 3.61
159 160 3.193479 GCAACTTTATTGGGGAGGAACTG 59.807 47.826 0.00 0.00 41.55 3.16
164 165 3.019564 CTCTGCAACTTTATTGGGGAGG 58.980 50.000 0.00 0.00 0.00 4.30
183 184 3.149196 TGTGCATGGAAGAACTTTCCTC 58.851 45.455 7.39 0.00 39.31 3.71
231 232 3.655615 TGTTGTGATAATACCCCACCC 57.344 47.619 0.00 0.00 0.00 4.61
235 236 5.968528 TGTTGTTGTTGTGATAATACCCC 57.031 39.130 0.00 0.00 0.00 4.95
236 237 6.740110 TGTTGTTGTTGTTGTGATAATACCC 58.260 36.000 0.00 0.00 0.00 3.69
237 238 7.096803 CGTTGTTGTTGTTGTTGTGATAATACC 60.097 37.037 0.00 0.00 0.00 2.73
238 239 7.429920 ACGTTGTTGTTGTTGTTGTGATAATAC 59.570 33.333 0.00 0.00 0.00 1.89
263 264 8.968242 CAAGTTTAGCCAGACAAAAATAAAGAC 58.032 33.333 0.00 0.00 0.00 3.01
264 265 8.908903 TCAAGTTTAGCCAGACAAAAATAAAGA 58.091 29.630 0.00 0.00 0.00 2.52
268 269 9.733556 TCTATCAAGTTTAGCCAGACAAAAATA 57.266 29.630 0.00 0.00 0.00 1.40
270 271 7.936847 TCTCTATCAAGTTTAGCCAGACAAAAA 59.063 33.333 0.00 0.00 0.00 1.94
271 272 7.387948 GTCTCTATCAAGTTTAGCCAGACAAAA 59.612 37.037 0.00 0.00 0.00 2.44
272 273 6.874134 GTCTCTATCAAGTTTAGCCAGACAAA 59.126 38.462 0.00 0.00 0.00 2.83
273 274 6.398918 GTCTCTATCAAGTTTAGCCAGACAA 58.601 40.000 0.00 0.00 0.00 3.18
274 275 5.105310 GGTCTCTATCAAGTTTAGCCAGACA 60.105 44.000 0.00 0.00 28.97 3.41
275 276 5.105310 TGGTCTCTATCAAGTTTAGCCAGAC 60.105 44.000 0.00 0.00 0.00 3.51
276 277 5.023452 TGGTCTCTATCAAGTTTAGCCAGA 58.977 41.667 0.00 0.00 0.00 3.86
278 279 5.023452 TCTGGTCTCTATCAAGTTTAGCCA 58.977 41.667 0.00 0.00 0.00 4.75
279 280 5.105310 TGTCTGGTCTCTATCAAGTTTAGCC 60.105 44.000 0.00 0.00 0.00 3.93
280 281 5.808030 GTGTCTGGTCTCTATCAAGTTTAGC 59.192 44.000 0.00 0.00 0.00 3.09
281 282 6.030849 CGTGTCTGGTCTCTATCAAGTTTAG 58.969 44.000 0.00 0.00 0.00 1.85
282 283 5.708697 TCGTGTCTGGTCTCTATCAAGTTTA 59.291 40.000 0.00 0.00 0.00 2.01
283 284 4.523173 TCGTGTCTGGTCTCTATCAAGTTT 59.477 41.667 0.00 0.00 0.00 2.66
287 288 4.082190 CCTTTCGTGTCTGGTCTCTATCAA 60.082 45.833 0.00 0.00 0.00 2.57
288 289 3.444034 CCTTTCGTGTCTGGTCTCTATCA 59.556 47.826 0.00 0.00 0.00 2.15
289 290 3.181485 CCCTTTCGTGTCTGGTCTCTATC 60.181 52.174 0.00 0.00 0.00 2.08
291 292 2.168496 CCCTTTCGTGTCTGGTCTCTA 58.832 52.381 0.00 0.00 0.00 2.43
292 293 0.969894 CCCTTTCGTGTCTGGTCTCT 59.030 55.000 0.00 0.00 0.00 3.10
293 294 0.966920 TCCCTTTCGTGTCTGGTCTC 59.033 55.000 0.00 0.00 0.00 3.36
295 296 2.076863 CATTCCCTTTCGTGTCTGGTC 58.923 52.381 0.00 0.00 0.00 4.02
297 298 1.453155 CCATTCCCTTTCGTGTCTGG 58.547 55.000 0.00 0.00 0.00 3.86
300 301 1.450025 GACCCATTCCCTTTCGTGTC 58.550 55.000 0.00 0.00 0.00 3.67
301 302 0.037734 GGACCCATTCCCTTTCGTGT 59.962 55.000 0.00 0.00 38.70 4.49
302 303 2.868253 GGACCCATTCCCTTTCGTG 58.132 57.895 0.00 0.00 38.70 4.35
310 311 1.003233 ACTTTCGTGAGGACCCATTCC 59.997 52.381 0.00 0.00 46.33 3.01
311 312 2.474410 ACTTTCGTGAGGACCCATTC 57.526 50.000 0.00 0.00 0.00 2.67
313 314 1.337823 CGAACTTTCGTGAGGACCCAT 60.338 52.381 3.13 0.00 45.09 4.00
314 315 0.032952 CGAACTTTCGTGAGGACCCA 59.967 55.000 3.13 0.00 45.09 4.51
315 316 2.823628 CGAACTTTCGTGAGGACCC 58.176 57.895 3.13 0.00 45.09 4.46
325 326 2.487762 TCACATTCCATGGCGAACTTTC 59.512 45.455 6.96 0.00 33.60 2.62
326 327 2.489329 CTCACATTCCATGGCGAACTTT 59.511 45.455 6.96 0.00 33.60 2.66
327 328 2.086869 CTCACATTCCATGGCGAACTT 58.913 47.619 6.96 0.00 33.60 2.66
328 329 1.003580 ACTCACATTCCATGGCGAACT 59.996 47.619 6.96 0.00 33.60 3.01
329 330 1.453155 ACTCACATTCCATGGCGAAC 58.547 50.000 6.96 0.00 33.60 3.95
330 331 3.006940 GTTACTCACATTCCATGGCGAA 58.993 45.455 6.96 0.00 33.60 4.70
331 332 2.627945 GTTACTCACATTCCATGGCGA 58.372 47.619 6.96 0.00 33.60 5.54
332 333 1.670811 GGTTACTCACATTCCATGGCG 59.329 52.381 6.96 0.00 33.60 5.69
333 334 1.670811 CGGTTACTCACATTCCATGGC 59.329 52.381 6.96 0.00 33.60 4.40
334 335 3.260475 TCGGTTACTCACATTCCATGG 57.740 47.619 4.97 4.97 33.60 3.66
335 336 5.818136 ATTTCGGTTACTCACATTCCATG 57.182 39.130 0.00 0.00 0.00 3.66
336 337 5.943416 TCAATTTCGGTTACTCACATTCCAT 59.057 36.000 0.00 0.00 0.00 3.41
337 338 5.309638 TCAATTTCGGTTACTCACATTCCA 58.690 37.500 0.00 0.00 0.00 3.53
338 339 5.873179 TCAATTTCGGTTACTCACATTCC 57.127 39.130 0.00 0.00 0.00 3.01
339 340 6.258160 CCATCAATTTCGGTTACTCACATTC 58.742 40.000 0.00 0.00 0.00 2.67
340 341 5.125417 CCCATCAATTTCGGTTACTCACATT 59.875 40.000 0.00 0.00 0.00 2.71
341 342 4.640201 CCCATCAATTTCGGTTACTCACAT 59.360 41.667 0.00 0.00 0.00 3.21
342 343 4.006989 CCCATCAATTTCGGTTACTCACA 58.993 43.478 0.00 0.00 0.00 3.58
343 344 3.377172 CCCCATCAATTTCGGTTACTCAC 59.623 47.826 0.00 0.00 0.00 3.51
344 345 3.264706 TCCCCATCAATTTCGGTTACTCA 59.735 43.478 0.00 0.00 0.00 3.41
345 346 3.877508 CTCCCCATCAATTTCGGTTACTC 59.122 47.826 0.00 0.00 0.00 2.59
346 347 3.521937 TCTCCCCATCAATTTCGGTTACT 59.478 43.478 0.00 0.00 0.00 2.24
347 348 3.881220 TCTCCCCATCAATTTCGGTTAC 58.119 45.455 0.00 0.00 0.00 2.50
348 349 4.226394 TCTTCTCCCCATCAATTTCGGTTA 59.774 41.667 0.00 0.00 0.00 2.85
349 350 3.010138 TCTTCTCCCCATCAATTTCGGTT 59.990 43.478 0.00 0.00 0.00 4.44
350 351 2.576191 TCTTCTCCCCATCAATTTCGGT 59.424 45.455 0.00 0.00 0.00 4.69
351 352 3.281727 TCTTCTCCCCATCAATTTCGG 57.718 47.619 0.00 0.00 0.00 4.30
352 353 3.567164 CCATCTTCTCCCCATCAATTTCG 59.433 47.826 0.00 0.00 0.00 3.46
353 354 4.340381 CACCATCTTCTCCCCATCAATTTC 59.660 45.833 0.00 0.00 0.00 2.17
354 355 4.284178 CACCATCTTCTCCCCATCAATTT 58.716 43.478 0.00 0.00 0.00 1.82
355 356 3.373438 CCACCATCTTCTCCCCATCAATT 60.373 47.826 0.00 0.00 0.00 2.32
356 357 2.176364 CCACCATCTTCTCCCCATCAAT 59.824 50.000 0.00 0.00 0.00 2.57
357 358 1.565759 CCACCATCTTCTCCCCATCAA 59.434 52.381 0.00 0.00 0.00 2.57
358 359 1.216064 CCACCATCTTCTCCCCATCA 58.784 55.000 0.00 0.00 0.00 3.07
359 360 1.419387 CTCCACCATCTTCTCCCCATC 59.581 57.143 0.00 0.00 0.00 3.51
360 361 1.010046 TCTCCACCATCTTCTCCCCAT 59.990 52.381 0.00 0.00 0.00 4.00
361 362 0.417437 TCTCCACCATCTTCTCCCCA 59.583 55.000 0.00 0.00 0.00 4.96
362 363 1.813102 ATCTCCACCATCTTCTCCCC 58.187 55.000 0.00 0.00 0.00 4.81
363 364 4.424842 AGATATCTCCACCATCTTCTCCC 58.575 47.826 0.00 0.00 0.00 4.30
364 365 6.723977 ACTTAGATATCTCCACCATCTTCTCC 59.276 42.308 8.95 0.00 31.60 3.71
365 366 7.450014 TCACTTAGATATCTCCACCATCTTCTC 59.550 40.741 8.95 0.00 31.60 2.87
366 367 7.232534 GTCACTTAGATATCTCCACCATCTTCT 59.767 40.741 8.95 0.00 31.60 2.85
367 368 7.232534 AGTCACTTAGATATCTCCACCATCTTC 59.767 40.741 8.95 0.00 31.60 2.87
368 369 7.072562 AGTCACTTAGATATCTCCACCATCTT 58.927 38.462 8.95 0.00 31.60 2.40
369 370 6.619464 AGTCACTTAGATATCTCCACCATCT 58.381 40.000 8.95 0.00 33.66 2.90
370 371 6.909550 AGTCACTTAGATATCTCCACCATC 57.090 41.667 8.95 0.00 0.00 3.51
371 372 8.173412 TCATAGTCACTTAGATATCTCCACCAT 58.827 37.037 8.95 0.00 0.00 3.55
372 373 7.526918 TCATAGTCACTTAGATATCTCCACCA 58.473 38.462 8.95 0.00 0.00 4.17
373 374 7.885922 TCTCATAGTCACTTAGATATCTCCACC 59.114 40.741 8.95 0.00 0.00 4.61
374 375 8.856153 TCTCATAGTCACTTAGATATCTCCAC 57.144 38.462 8.95 0.35 0.00 4.02
375 376 7.609918 GCTCTCATAGTCACTTAGATATCTCCA 59.390 40.741 8.95 0.00 0.00 3.86
376 377 7.609918 TGCTCTCATAGTCACTTAGATATCTCC 59.390 40.741 8.95 0.00 0.00 3.71
377 378 8.450964 GTGCTCTCATAGTCACTTAGATATCTC 58.549 40.741 8.95 0.00 32.66 2.75
378 379 7.941790 TGTGCTCTCATAGTCACTTAGATATCT 59.058 37.037 10.73 10.73 34.94 1.98
379 380 8.105097 TGTGCTCTCATAGTCACTTAGATATC 57.895 38.462 0.00 0.00 34.94 1.63
380 381 8.522003 CATGTGCTCTCATAGTCACTTAGATAT 58.478 37.037 0.00 0.00 34.94 1.63
381 382 7.040132 CCATGTGCTCTCATAGTCACTTAGATA 60.040 40.741 0.00 0.00 34.94 1.98
382 383 6.239261 CCATGTGCTCTCATAGTCACTTAGAT 60.239 42.308 0.00 0.00 34.94 1.98
383 384 5.068329 CCATGTGCTCTCATAGTCACTTAGA 59.932 44.000 0.00 0.00 34.94 2.10
384 385 5.163468 ACCATGTGCTCTCATAGTCACTTAG 60.163 44.000 0.00 0.00 34.94 2.18
385 386 4.711846 ACCATGTGCTCTCATAGTCACTTA 59.288 41.667 0.00 0.00 34.94 2.24
386 387 3.517100 ACCATGTGCTCTCATAGTCACTT 59.483 43.478 0.00 0.00 34.94 3.16
387 388 3.102972 ACCATGTGCTCTCATAGTCACT 58.897 45.455 0.00 0.00 34.94 3.41
388 389 3.193263 CACCATGTGCTCTCATAGTCAC 58.807 50.000 0.00 0.00 34.65 3.67
389 390 2.169144 CCACCATGTGCTCTCATAGTCA 59.831 50.000 0.00 0.00 31.34 3.41
390 391 2.432146 TCCACCATGTGCTCTCATAGTC 59.568 50.000 0.00 0.00 31.34 2.59
391 392 2.470990 TCCACCATGTGCTCTCATAGT 58.529 47.619 0.00 0.00 31.34 2.12
392 393 3.548745 TTCCACCATGTGCTCTCATAG 57.451 47.619 0.00 0.00 31.34 2.23
393 394 3.370846 CCTTTCCACCATGTGCTCTCATA 60.371 47.826 0.00 0.00 31.34 2.15
394 395 2.619849 CCTTTCCACCATGTGCTCTCAT 60.620 50.000 0.00 0.00 31.34 2.90
395 396 1.271543 CCTTTCCACCATGTGCTCTCA 60.272 52.381 0.00 0.00 31.34 3.27
396 397 1.457346 CCTTTCCACCATGTGCTCTC 58.543 55.000 0.00 0.00 31.34 3.20
397 398 0.038744 CCCTTTCCACCATGTGCTCT 59.961 55.000 0.00 0.00 31.34 4.09
398 399 0.967380 CCCCTTTCCACCATGTGCTC 60.967 60.000 0.00 0.00 31.34 4.26
399 400 1.077265 CCCCTTTCCACCATGTGCT 59.923 57.895 0.00 0.00 31.34 4.40
400 401 1.984026 CCCCCTTTCCACCATGTGC 60.984 63.158 0.00 0.00 31.34 4.57
401 402 0.323725 CTCCCCCTTTCCACCATGTG 60.324 60.000 0.00 0.00 0.00 3.21
402 403 1.509548 CCTCCCCCTTTCCACCATGT 61.510 60.000 0.00 0.00 0.00 3.21
403 404 1.214305 TCCTCCCCCTTTCCACCATG 61.214 60.000 0.00 0.00 0.00 3.66
404 405 0.479589 TTCCTCCCCCTTTCCACCAT 60.480 55.000 0.00 0.00 0.00 3.55
405 406 1.072538 TTCCTCCCCCTTTCCACCA 60.073 57.895 0.00 0.00 0.00 4.17
406 407 0.845102 TCTTCCTCCCCCTTTCCACC 60.845 60.000 0.00 0.00 0.00 4.61
407 408 0.328592 GTCTTCCTCCCCCTTTCCAC 59.671 60.000 0.00 0.00 0.00 4.02
408 409 1.198759 CGTCTTCCTCCCCCTTTCCA 61.199 60.000 0.00 0.00 0.00 3.53
409 410 0.908180 TCGTCTTCCTCCCCCTTTCC 60.908 60.000 0.00 0.00 0.00 3.13
410 411 0.981943 TTCGTCTTCCTCCCCCTTTC 59.018 55.000 0.00 0.00 0.00 2.62
411 412 0.984995 CTTCGTCTTCCTCCCCCTTT 59.015 55.000 0.00 0.00 0.00 3.11
412 413 1.554583 GCTTCGTCTTCCTCCCCCTT 61.555 60.000 0.00 0.00 0.00 3.95
413 414 1.990614 GCTTCGTCTTCCTCCCCCT 60.991 63.158 0.00 0.00 0.00 4.79
414 415 2.585153 GCTTCGTCTTCCTCCCCC 59.415 66.667 0.00 0.00 0.00 5.40
415 416 2.184579 CGCTTCGTCTTCCTCCCC 59.815 66.667 0.00 0.00 0.00 4.81
416 417 1.153804 GTCGCTTCGTCTTCCTCCC 60.154 63.158 0.00 0.00 0.00 4.30
417 418 1.153804 GGTCGCTTCGTCTTCCTCC 60.154 63.158 0.00 0.00 0.00 4.30
418 419 0.456995 CTGGTCGCTTCGTCTTCCTC 60.457 60.000 0.00 0.00 0.00 3.71
419 420 1.587054 CTGGTCGCTTCGTCTTCCT 59.413 57.895 0.00 0.00 0.00 3.36
420 421 1.446272 CCTGGTCGCTTCGTCTTCC 60.446 63.158 0.00 0.00 0.00 3.46
421 422 1.446272 CCCTGGTCGCTTCGTCTTC 60.446 63.158 0.00 0.00 0.00 2.87
422 423 2.207924 ACCCTGGTCGCTTCGTCTT 61.208 57.895 0.00 0.00 0.00 3.01
423 424 2.600769 ACCCTGGTCGCTTCGTCT 60.601 61.111 0.00 0.00 0.00 4.18
424 425 2.432628 CACCCTGGTCGCTTCGTC 60.433 66.667 0.00 0.00 0.00 4.20
425 426 3.231736 ACACCCTGGTCGCTTCGT 61.232 61.111 0.00 0.00 0.00 3.85
426 427 2.738521 CACACCCTGGTCGCTTCG 60.739 66.667 0.00 0.00 0.00 3.79
427 428 3.050275 GCACACCCTGGTCGCTTC 61.050 66.667 0.00 0.00 0.00 3.86
428 429 1.764571 TAAGCACACCCTGGTCGCTT 61.765 55.000 20.42 20.42 42.70 4.68
429 430 1.553690 ATAAGCACACCCTGGTCGCT 61.554 55.000 4.33 4.33 36.00 4.93
430 431 1.078426 ATAAGCACACCCTGGTCGC 60.078 57.895 0.00 0.00 0.00 5.19
431 432 0.036388 ACATAAGCACACCCTGGTCG 60.036 55.000 0.00 0.00 0.00 4.79
432 433 1.453155 CACATAAGCACACCCTGGTC 58.547 55.000 0.00 0.00 0.00 4.02
433 434 0.038166 CCACATAAGCACACCCTGGT 59.962 55.000 0.00 0.00 0.00 4.00
434 435 1.315257 GCCACATAAGCACACCCTGG 61.315 60.000 0.00 0.00 0.00 4.45
435 436 0.608856 TGCCACATAAGCACACCCTG 60.609 55.000 0.00 0.00 34.69 4.45
436 437 0.332632 ATGCCACATAAGCACACCCT 59.667 50.000 0.00 0.00 44.40 4.34
437 438 1.185315 AATGCCACATAAGCACACCC 58.815 50.000 0.00 0.00 44.40 4.61
438 439 2.493278 AGAAATGCCACATAAGCACACC 59.507 45.455 0.00 0.00 44.40 4.16
439 440 3.855689 AGAAATGCCACATAAGCACAC 57.144 42.857 0.00 0.00 44.40 3.82
440 441 4.588899 AGTAGAAATGCCACATAAGCACA 58.411 39.130 0.00 0.00 44.40 4.57
441 442 4.878397 AGAGTAGAAATGCCACATAAGCAC 59.122 41.667 0.00 0.00 44.40 4.40
442 443 5.102953 AGAGTAGAAATGCCACATAAGCA 57.897 39.130 0.00 0.00 45.94 3.91
443 444 6.763610 AGTAAGAGTAGAAATGCCACATAAGC 59.236 38.462 0.00 0.00 0.00 3.09
444 445 7.981789 TCAGTAAGAGTAGAAATGCCACATAAG 59.018 37.037 0.00 0.00 0.00 1.73
445 446 7.847096 TCAGTAAGAGTAGAAATGCCACATAA 58.153 34.615 0.00 0.00 0.00 1.90
446 447 7.418337 TCAGTAAGAGTAGAAATGCCACATA 57.582 36.000 0.00 0.00 0.00 2.29
447 448 6.299805 TCAGTAAGAGTAGAAATGCCACAT 57.700 37.500 0.00 0.00 0.00 3.21
448 449 5.738619 TCAGTAAGAGTAGAAATGCCACA 57.261 39.130 0.00 0.00 0.00 4.17
449 450 7.414540 CCAATTCAGTAAGAGTAGAAATGCCAC 60.415 40.741 0.00 0.00 0.00 5.01
450 451 6.599244 CCAATTCAGTAAGAGTAGAAATGCCA 59.401 38.462 0.00 0.00 0.00 4.92
451 452 6.599638 ACCAATTCAGTAAGAGTAGAAATGCC 59.400 38.462 0.00 0.00 0.00 4.40
452 453 7.617041 ACCAATTCAGTAAGAGTAGAAATGC 57.383 36.000 0.00 0.00 0.00 3.56
472 473 4.141688 GGTTGGTGTTGGGAATTTAACCAA 60.142 41.667 1.07 1.07 43.50 3.67
473 474 3.388350 GGTTGGTGTTGGGAATTTAACCA 59.612 43.478 0.00 0.00 37.03 3.67
474 475 3.644265 AGGTTGGTGTTGGGAATTTAACC 59.356 43.478 0.00 0.00 37.25 2.85
475 476 4.262292 GGAGGTTGGTGTTGGGAATTTAAC 60.262 45.833 0.00 0.00 0.00 2.01
476 477 3.898741 GGAGGTTGGTGTTGGGAATTTAA 59.101 43.478 0.00 0.00 0.00 1.52
477 478 3.141272 AGGAGGTTGGTGTTGGGAATTTA 59.859 43.478 0.00 0.00 0.00 1.40
478 479 2.090775 AGGAGGTTGGTGTTGGGAATTT 60.091 45.455 0.00 0.00 0.00 1.82
479 480 1.503347 AGGAGGTTGGTGTTGGGAATT 59.497 47.619 0.00 0.00 0.00 2.17
480 481 1.075536 GAGGAGGTTGGTGTTGGGAAT 59.924 52.381 0.00 0.00 0.00 3.01
481 482 0.476771 GAGGAGGTTGGTGTTGGGAA 59.523 55.000 0.00 0.00 0.00 3.97
482 483 1.423794 GGAGGAGGTTGGTGTTGGGA 61.424 60.000 0.00 0.00 0.00 4.37
483 484 1.074951 GGAGGAGGTTGGTGTTGGG 59.925 63.158 0.00 0.00 0.00 4.12
484 485 0.537371 GTGGAGGAGGTTGGTGTTGG 60.537 60.000 0.00 0.00 0.00 3.77
490 491 3.934391 GACGCGTGGAGGAGGTTGG 62.934 68.421 20.70 0.00 0.00 3.77
495 496 0.029567 GATGTAGACGCGTGGAGGAG 59.970 60.000 20.70 0.00 0.00 3.69
496 497 0.393944 AGATGTAGACGCGTGGAGGA 60.394 55.000 20.70 0.00 0.00 3.71
497 498 0.029567 GAGATGTAGACGCGTGGAGG 59.970 60.000 20.70 0.00 0.00 4.30
498 499 0.316278 CGAGATGTAGACGCGTGGAG 60.316 60.000 20.70 0.00 0.00 3.86
499 500 0.741927 TCGAGATGTAGACGCGTGGA 60.742 55.000 20.70 0.00 32.94 4.02
500 501 0.308068 ATCGAGATGTAGACGCGTGG 59.692 55.000 20.70 0.00 32.94 4.94
501 502 1.003866 TCATCGAGATGTAGACGCGTG 60.004 52.381 20.70 0.00 39.72 5.34
502 503 1.003759 GTCATCGAGATGTAGACGCGT 60.004 52.381 13.85 13.85 39.72 6.01
503 504 1.003866 TGTCATCGAGATGTAGACGCG 60.004 52.381 3.53 3.53 39.72 6.01
504 505 2.757686 TGTCATCGAGATGTAGACGC 57.242 50.000 12.22 0.37 39.72 5.19
505 506 4.085363 GCAATTGTCATCGAGATGTAGACG 60.085 45.833 7.40 0.00 39.72 4.18
506 507 4.805719 TGCAATTGTCATCGAGATGTAGAC 59.194 41.667 7.40 5.04 39.72 2.59
507 508 5.009854 TGCAATTGTCATCGAGATGTAGA 57.990 39.130 7.40 1.42 39.72 2.59
508 509 5.723492 TTGCAATTGTCATCGAGATGTAG 57.277 39.130 7.40 0.73 39.72 2.74
509 510 6.403527 CCTTTTGCAATTGTCATCGAGATGTA 60.404 38.462 7.40 1.75 39.72 2.29
510 511 5.375417 TTTTGCAATTGTCATCGAGATGT 57.625 34.783 7.40 0.00 39.72 3.06
511 512 4.796830 CCTTTTGCAATTGTCATCGAGATG 59.203 41.667 7.40 6.74 40.09 2.90
512 513 4.142315 CCCTTTTGCAATTGTCATCGAGAT 60.142 41.667 7.40 0.00 0.00 2.75
513 514 3.191162 CCCTTTTGCAATTGTCATCGAGA 59.809 43.478 7.40 0.00 0.00 4.04
514 515 3.504863 CCCTTTTGCAATTGTCATCGAG 58.495 45.455 7.40 4.61 0.00 4.04
515 516 2.230992 CCCCTTTTGCAATTGTCATCGA 59.769 45.455 7.40 0.00 0.00 3.59
516 517 2.029110 ACCCCTTTTGCAATTGTCATCG 60.029 45.455 7.40 0.00 0.00 3.84
517 518 3.683365 ACCCCTTTTGCAATTGTCATC 57.317 42.857 7.40 0.00 0.00 2.92
518 519 5.559148 TTAACCCCTTTTGCAATTGTCAT 57.441 34.783 7.40 0.00 0.00 3.06
519 520 5.559148 ATTAACCCCTTTTGCAATTGTCA 57.441 34.783 7.40 2.90 0.00 3.58
520 521 7.821846 TGATAATTAACCCCTTTTGCAATTGTC 59.178 33.333 7.40 0.07 0.00 3.18
521 522 7.684529 TGATAATTAACCCCTTTTGCAATTGT 58.315 30.769 7.40 0.00 0.00 2.71
522 523 8.735692 ATGATAATTAACCCCTTTTGCAATTG 57.264 30.769 0.00 0.00 0.00 2.32
523 524 9.752228 AAATGATAATTAACCCCTTTTGCAATT 57.248 25.926 0.00 0.00 0.00 2.32
524 525 9.752228 AAAATGATAATTAACCCCTTTTGCAAT 57.248 25.926 0.00 0.00 0.00 3.56
525 526 9.579932 AAAAATGATAATTAACCCCTTTTGCAA 57.420 25.926 0.00 0.00 0.00 4.08
551 552 2.567169 CACATGGACACTACTGAGGGAA 59.433 50.000 0.00 0.00 0.00 3.97
552 553 2.179427 CACATGGACACTACTGAGGGA 58.821 52.381 0.00 0.00 0.00 4.20
855 856 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1117 1215 0.815734 GGACGATTCTGGTTCCTCGA 59.184 55.000 0.00 0.00 35.24 4.04
1466 1583 4.455190 CCCAAAAGTATTTGCAAATGGGTG 59.545 41.667 30.43 20.04 43.11 4.61
1533 1650 6.666546 CCTCCATAATTCATGCCTTTCCATAT 59.333 38.462 0.00 0.00 32.84 1.78
1567 1684 9.346725 GGTGAATTTCTCATACAATTTCAAGAC 57.653 33.333 0.00 0.00 36.14 3.01
1632 1749 8.519799 AATGTTGGTCACTTCTTCTCTTTTTA 57.480 30.769 0.00 0.00 0.00 1.52
1911 2033 6.017109 GCTCCGGAATAATTCAATTAGCTTCA 60.017 38.462 5.23 0.00 0.00 3.02
2240 2383 2.990284 TCCTTCCCTACCCATGTCAAAA 59.010 45.455 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.