Multiple sequence alignment - TraesCS5D01G421400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G421400 chr5D 100.000 3664 0 0 1 3664 481566537 481562874 0.000000e+00 6767.0
1 TraesCS5D01G421400 chr5D 85.278 1243 108 36 2234 3463 481761195 481760015 0.000000e+00 1212.0
2 TraesCS5D01G421400 chr5D 83.512 1213 124 39 1837 3017 481643834 481642666 0.000000e+00 1062.0
3 TraesCS5D01G421400 chr5D 80.964 851 103 34 812 1623 481762950 481762120 1.450000e-173 619.0
4 TraesCS5D01G421400 chr5D 91.275 149 12 1 552 700 437362252 437362105 6.200000e-48 202.0
5 TraesCS5D01G421400 chr5A 90.502 2032 97 29 1501 3478 600504370 600502381 0.000000e+00 2595.0
6 TraesCS5D01G421400 chr5A 83.082 1661 164 67 1837 3478 601256735 601255173 0.000000e+00 1402.0
7 TraesCS5D01G421400 chr5A 84.805 1257 119 41 2230 3478 601341931 601340739 0.000000e+00 1197.0
8 TraesCS5D01G421400 chr5A 82.972 1198 144 31 1837 3018 601098754 601097601 0.000000e+00 1027.0
9 TraesCS5D01G421400 chr5A 84.378 1005 116 22 2176 3171 601086810 601085838 0.000000e+00 948.0
10 TraesCS5D01G421400 chr5A 91.650 503 38 4 2276 2777 601166999 601166500 0.000000e+00 693.0
11 TraesCS5D01G421400 chr5A 81.884 828 108 22 2400 3211 601483988 601483187 0.000000e+00 660.0
12 TraesCS5D01G421400 chr5A 88.258 528 23 16 754 1249 600504976 600504456 2.440000e-166 595.0
13 TraesCS5D01G421400 chr5A 81.996 561 56 24 817 1345 601258386 601257839 5.620000e-118 435.0
14 TraesCS5D01G421400 chr5A 83.476 466 35 20 809 1249 601343640 601343192 2.650000e-106 396.0
15 TraesCS5D01G421400 chr5A 83.468 248 26 11 3068 3311 601245752 601245516 2.220000e-52 217.0
16 TraesCS5D01G421400 chr5A 81.860 215 21 11 1753 1961 601087023 601086821 8.140000e-37 165.0
17 TraesCS5D01G421400 chr5A 92.308 104 6 2 1545 1647 601168401 601168299 2.950000e-31 147.0
18 TraesCS5D01G421400 chr5B 93.725 1243 50 11 2146 3361 590183636 590182395 0.000000e+00 1838.0
19 TraesCS5D01G421400 chr5B 84.720 1250 110 45 2243 3478 590806043 590804861 0.000000e+00 1175.0
20 TraesCS5D01G421400 chr5B 88.664 988 57 23 702 1647 590185010 590184036 0.000000e+00 1153.0
21 TraesCS5D01G421400 chr5B 88.197 771 73 10 1932 2698 590256771 590256015 0.000000e+00 904.0
22 TraesCS5D01G421400 chr5B 83.623 690 73 19 2298 2980 590501955 590501299 2.420000e-171 612.0
23 TraesCS5D01G421400 chr5B 82.527 744 69 23 2269 3006 590455230 590454542 6.770000e-167 597.0
24 TraesCS5D01G421400 chr5B 79.161 739 77 24 808 1480 590807981 590807254 1.210000e-119 440.0
25 TraesCS5D01G421400 chr5B 84.889 450 39 21 1753 2190 590806468 590806036 9.400000e-116 427.0
26 TraesCS5D01G421400 chr5B 96.842 190 6 0 3475 3664 590181285 590181096 5.900000e-83 318.0
27 TraesCS5D01G421400 chr5B 88.645 273 13 11 1862 2124 590184032 590183768 2.120000e-82 316.0
28 TraesCS5D01G421400 chr5B 80.088 457 58 21 893 1342 590530870 590530440 3.550000e-80 309.0
29 TraesCS5D01G421400 chr5B 85.022 227 23 7 2083 2306 590502703 590502485 1.710000e-53 220.0
30 TraesCS5D01G421400 chr5B 98.374 123 2 0 3356 3478 590181900 590181778 2.220000e-52 217.0
31 TraesCS5D01G421400 chr5B 85.446 213 23 5 348 553 590185219 590185008 7.970000e-52 215.0
32 TraesCS5D01G421400 chr5B 84.793 217 29 4 949 1165 590456677 590456465 7.970000e-52 215.0
33 TraesCS5D01G421400 chr5B 83.978 181 19 6 1753 1933 590502904 590502734 8.140000e-37 165.0
34 TraesCS5D01G421400 chr5B 93.939 66 4 0 3481 3546 590801835 590801770 2.330000e-17 100.0
35 TraesCS5D01G421400 chr3A 92.308 156 10 2 552 706 77924486 77924332 1.710000e-53 220.0
36 TraesCS5D01G421400 chr3A 92.308 156 10 2 552 706 77929513 77929359 1.710000e-53 220.0
37 TraesCS5D01G421400 chr6A 82.869 251 30 9 1 243 582838236 582838481 2.870000e-51 213.0
38 TraesCS5D01G421400 chr1A 91.139 158 12 2 552 708 519631546 519631390 2.870000e-51 213.0
39 TraesCS5D01G421400 chr1A 83.957 187 28 1 7 191 37760525 37760339 1.050000e-40 178.0
40 TraesCS5D01G421400 chr1A 89.899 99 7 3 247 344 96684951 96684855 1.380000e-24 124.0
41 TraesCS5D01G421400 chr7D 91.837 98 7 1 248 344 601936192 601936095 6.380000e-28 135.0
42 TraesCS5D01G421400 chr3B 89.423 104 9 2 246 348 182639098 182638996 2.970000e-26 130.0
43 TraesCS5D01G421400 chr3B 88.288 111 9 4 242 348 412276571 412276461 2.970000e-26 130.0
44 TraesCS5D01G421400 chr2A 88.889 108 9 3 238 344 293961954 293962059 2.970000e-26 130.0
45 TraesCS5D01G421400 chr2D 87.611 113 8 4 242 348 648648055 648648167 3.840000e-25 126.0
46 TraesCS5D01G421400 chr1D 89.216 102 8 3 246 344 285429142 285429243 1.380000e-24 124.0
47 TraesCS5D01G421400 chr2B 87.850 107 9 2 242 344 14983373 14983267 4.970000e-24 122.0
48 TraesCS5D01G421400 chr6B 87.619 105 11 2 242 344 678598186 678598082 1.790000e-23 121.0
49 TraesCS5D01G421400 chr1B 86.735 98 13 0 604 701 259787206 259787303 3.870000e-20 110.0
50 TraesCS5D01G421400 chr1B 85.897 78 9 2 158 233 510600476 510600399 8.430000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G421400 chr5D 481562874 481566537 3663 True 6767.000000 6767 100.000000 1 3664 1 chr5D.!!$R2 3663
1 TraesCS5D01G421400 chr5D 481642666 481643834 1168 True 1062.000000 1062 83.512000 1837 3017 1 chr5D.!!$R3 1180
2 TraesCS5D01G421400 chr5D 481760015 481762950 2935 True 915.500000 1212 83.121000 812 3463 2 chr5D.!!$R4 2651
3 TraesCS5D01G421400 chr5A 600502381 600504976 2595 True 1595.000000 2595 89.380000 754 3478 2 chr5A.!!$R4 2724
4 TraesCS5D01G421400 chr5A 601097601 601098754 1153 True 1027.000000 1027 82.972000 1837 3018 1 chr5A.!!$R1 1181
5 TraesCS5D01G421400 chr5A 601255173 601258386 3213 True 918.500000 1402 82.539000 817 3478 2 chr5A.!!$R7 2661
6 TraesCS5D01G421400 chr5A 601340739 601343640 2901 True 796.500000 1197 84.140500 809 3478 2 chr5A.!!$R8 2669
7 TraesCS5D01G421400 chr5A 601483187 601483988 801 True 660.000000 660 81.884000 2400 3211 1 chr5A.!!$R3 811
8 TraesCS5D01G421400 chr5A 601085838 601087023 1185 True 556.500000 948 83.119000 1753 3171 2 chr5A.!!$R5 1418
9 TraesCS5D01G421400 chr5A 601166500 601168401 1901 True 420.000000 693 91.979000 1545 2777 2 chr5A.!!$R6 1232
10 TraesCS5D01G421400 chr5B 590256015 590256771 756 True 904.000000 904 88.197000 1932 2698 1 chr5B.!!$R1 766
11 TraesCS5D01G421400 chr5B 590181096 590185219 4123 True 676.166667 1838 91.949333 348 3664 6 chr5B.!!$R3 3316
12 TraesCS5D01G421400 chr5B 590801770 590807981 6211 True 535.500000 1175 85.677250 808 3546 4 chr5B.!!$R6 2738
13 TraesCS5D01G421400 chr5B 590454542 590456677 2135 True 406.000000 597 83.660000 949 3006 2 chr5B.!!$R4 2057
14 TraesCS5D01G421400 chr5B 590501299 590502904 1605 True 332.333333 612 84.207667 1753 2980 3 chr5B.!!$R5 1227

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 576 0.177141 TAGGCCCTGTTCGGAAATCG 59.823 55.0 0.0 0.0 40.90 3.34 F
625 631 0.250295 CCACTTTCGCAACTCCCAGA 60.250 55.0 0.0 0.0 0.00 3.86 F
1311 2184 0.674581 TGCAATCTTCCGTGCAGAGG 60.675 55.0 1.8 1.8 45.52 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1467 3114 1.741706 AGCATTGGACAAATCGAGCAG 59.258 47.619 0.00 0.00 0.0 4.24 R
1511 3166 2.061509 TCAATCAGTCATGGCATGGG 57.938 50.000 26.15 16.13 0.0 4.00 R
2665 6013 3.011595 TCCATCACCATCCTCCATTGTTT 59.988 43.478 0.00 0.00 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 8.729805 TGAACATAAGTAACATGTATGATGCA 57.270 30.769 11.59 0.00 35.58 3.96
76 77 9.341078 TGAACATAAGTAACATGTATGATGCAT 57.659 29.630 11.59 0.00 35.58 3.96
77 78 9.603298 GAACATAAGTAACATGTATGATGCATG 57.397 33.333 19.71 19.71 46.51 4.06
86 87 6.622833 CATGTATGATGCATGTTAAGGTGA 57.377 37.500 14.28 0.00 38.96 4.02
87 88 6.665465 CATGTATGATGCATGTTAAGGTGAG 58.335 40.000 14.28 0.00 38.96 3.51
88 89 5.744171 TGTATGATGCATGTTAAGGTGAGT 58.256 37.500 2.46 0.00 0.00 3.41
89 90 6.179756 TGTATGATGCATGTTAAGGTGAGTT 58.820 36.000 2.46 0.00 0.00 3.01
90 91 6.658816 TGTATGATGCATGTTAAGGTGAGTTT 59.341 34.615 2.46 0.00 0.00 2.66
91 92 6.594788 ATGATGCATGTTAAGGTGAGTTTT 57.405 33.333 2.46 0.00 0.00 2.43
92 93 6.403866 TGATGCATGTTAAGGTGAGTTTTT 57.596 33.333 2.46 0.00 0.00 1.94
118 119 3.912496 TGCATAGTGGCATAGTGAGTT 57.088 42.857 0.00 0.00 39.25 3.01
119 120 3.534554 TGCATAGTGGCATAGTGAGTTG 58.465 45.455 0.00 0.00 39.25 3.16
120 121 2.874701 GCATAGTGGCATAGTGAGTTGG 59.125 50.000 0.00 0.00 0.00 3.77
121 122 2.691409 TAGTGGCATAGTGAGTTGGC 57.309 50.000 0.00 0.00 38.77 4.52
122 123 0.692476 AGTGGCATAGTGAGTTGGCA 59.308 50.000 0.00 0.00 44.96 4.92
125 126 3.198409 TGGCATAGTGAGTTGGCATAG 57.802 47.619 0.00 0.00 42.67 2.23
126 127 2.505407 TGGCATAGTGAGTTGGCATAGT 59.495 45.455 0.00 0.00 42.67 2.12
127 128 3.054434 TGGCATAGTGAGTTGGCATAGTT 60.054 43.478 0.00 0.00 42.67 2.24
128 129 4.163268 TGGCATAGTGAGTTGGCATAGTTA 59.837 41.667 0.00 0.00 42.67 2.24
129 130 4.511826 GGCATAGTGAGTTGGCATAGTTAC 59.488 45.833 0.00 0.00 38.23 2.50
130 131 5.116180 GCATAGTGAGTTGGCATAGTTACA 58.884 41.667 0.00 0.00 0.00 2.41
131 132 5.235186 GCATAGTGAGTTGGCATAGTTACAG 59.765 44.000 0.00 0.00 0.00 2.74
132 133 4.207891 AGTGAGTTGGCATAGTTACAGG 57.792 45.455 0.00 0.00 0.00 4.00
133 134 3.583086 AGTGAGTTGGCATAGTTACAGGT 59.417 43.478 0.00 0.00 0.00 4.00
134 135 4.775780 AGTGAGTTGGCATAGTTACAGGTA 59.224 41.667 0.00 0.00 0.00 3.08
135 136 5.105310 AGTGAGTTGGCATAGTTACAGGTAG 60.105 44.000 0.00 0.00 0.00 3.18
136 137 5.020795 TGAGTTGGCATAGTTACAGGTAGA 58.979 41.667 0.00 0.00 0.00 2.59
137 138 5.127194 TGAGTTGGCATAGTTACAGGTAGAG 59.873 44.000 0.00 0.00 0.00 2.43
138 139 5.269991 AGTTGGCATAGTTACAGGTAGAGA 58.730 41.667 0.00 0.00 0.00 3.10
139 140 5.361285 AGTTGGCATAGTTACAGGTAGAGAG 59.639 44.000 0.00 0.00 0.00 3.20
140 141 5.125367 TGGCATAGTTACAGGTAGAGAGA 57.875 43.478 0.00 0.00 0.00 3.10
141 142 5.516044 TGGCATAGTTACAGGTAGAGAGAA 58.484 41.667 0.00 0.00 0.00 2.87
142 143 6.136857 TGGCATAGTTACAGGTAGAGAGAAT 58.863 40.000 0.00 0.00 0.00 2.40
143 144 6.611642 TGGCATAGTTACAGGTAGAGAGAATT 59.388 38.462 0.00 0.00 0.00 2.17
144 145 7.783119 TGGCATAGTTACAGGTAGAGAGAATTA 59.217 37.037 0.00 0.00 0.00 1.40
145 146 8.639761 GGCATAGTTACAGGTAGAGAGAATTAA 58.360 37.037 0.00 0.00 0.00 1.40
153 154 8.649973 ACAGGTAGAGAGAATTAAATTTAGCG 57.350 34.615 0.00 0.00 0.00 4.26
154 155 7.711339 ACAGGTAGAGAGAATTAAATTTAGCGG 59.289 37.037 0.00 0.00 0.00 5.52
155 156 7.711339 CAGGTAGAGAGAATTAAATTTAGCGGT 59.289 37.037 0.00 0.00 0.00 5.68
156 157 7.711339 AGGTAGAGAGAATTAAATTTAGCGGTG 59.289 37.037 0.00 0.00 0.00 4.94
157 158 6.364945 AGAGAGAATTAAATTTAGCGGTGC 57.635 37.500 0.00 0.00 0.00 5.01
158 159 5.880332 AGAGAGAATTAAATTTAGCGGTGCA 59.120 36.000 0.00 0.00 0.00 4.57
159 160 6.543831 AGAGAGAATTAAATTTAGCGGTGCAT 59.456 34.615 0.00 0.00 0.00 3.96
160 161 6.498304 AGAGAATTAAATTTAGCGGTGCATG 58.502 36.000 0.00 0.00 0.00 4.06
161 162 5.043248 AGAATTAAATTTAGCGGTGCATGC 58.957 37.500 11.82 11.82 0.00 4.06
162 163 3.857549 TTAAATTTAGCGGTGCATGCA 57.142 38.095 18.46 18.46 33.85 3.96
163 164 2.965572 AAATTTAGCGGTGCATGCAT 57.034 40.000 25.64 10.48 33.85 3.96
164 165 2.212869 AATTTAGCGGTGCATGCATG 57.787 45.000 25.64 22.70 33.85 4.06
165 166 1.391577 ATTTAGCGGTGCATGCATGA 58.608 45.000 30.64 12.48 33.85 3.07
166 167 1.391577 TTTAGCGGTGCATGCATGAT 58.608 45.000 30.64 20.11 33.85 2.45
167 168 0.664224 TTAGCGGTGCATGCATGATG 59.336 50.000 30.64 15.83 34.84 3.07
168 169 0.464193 TAGCGGTGCATGCATGATGT 60.464 50.000 30.64 10.46 34.14 3.06
169 170 1.298863 GCGGTGCATGCATGATGTC 60.299 57.895 30.64 12.74 34.14 3.06
170 171 1.995646 GCGGTGCATGCATGATGTCA 61.996 55.000 30.64 15.32 34.14 3.58
171 172 0.666374 CGGTGCATGCATGATGTCAT 59.334 50.000 30.64 0.00 36.96 3.06
183 184 3.353370 TGATGTCATGATGAGTTGGCA 57.647 42.857 0.00 0.00 0.00 4.92
184 185 3.893521 TGATGTCATGATGAGTTGGCAT 58.106 40.909 0.00 0.00 40.69 4.40
185 186 5.038651 TGATGTCATGATGAGTTGGCATA 57.961 39.130 0.00 0.00 38.24 3.14
186 187 5.061179 TGATGTCATGATGAGTTGGCATAG 58.939 41.667 0.00 0.00 38.24 2.23
187 188 4.492494 TGTCATGATGAGTTGGCATAGT 57.508 40.909 0.00 0.00 0.00 2.12
188 189 5.612725 TGTCATGATGAGTTGGCATAGTA 57.387 39.130 0.00 0.00 0.00 1.82
189 190 5.604565 TGTCATGATGAGTTGGCATAGTAG 58.395 41.667 0.00 0.00 0.00 2.57
190 191 4.450419 GTCATGATGAGTTGGCATAGTAGC 59.550 45.833 0.00 0.00 0.00 3.58
191 192 4.101430 TCATGATGAGTTGGCATAGTAGCA 59.899 41.667 0.00 0.00 35.83 3.49
192 193 4.694760 TGATGAGTTGGCATAGTAGCAT 57.305 40.909 0.00 0.00 35.83 3.79
193 194 4.383173 TGATGAGTTGGCATAGTAGCATG 58.617 43.478 0.00 0.00 35.83 4.06
194 195 3.912496 TGAGTTGGCATAGTAGCATGT 57.088 42.857 0.00 0.00 35.83 3.21
195 196 3.797039 TGAGTTGGCATAGTAGCATGTC 58.203 45.455 0.00 0.00 35.83 3.06
196 197 3.197549 TGAGTTGGCATAGTAGCATGTCA 59.802 43.478 0.00 0.00 38.71 3.58
197 198 4.191544 GAGTTGGCATAGTAGCATGTCAA 58.808 43.478 0.00 0.00 45.65 3.18
199 200 4.486125 TTGGCATAGTAGCATGTCAAGA 57.514 40.909 0.00 0.00 43.64 3.02
200 201 4.694760 TGGCATAGTAGCATGTCAAGAT 57.305 40.909 0.00 0.00 37.58 2.40
201 202 5.806654 TGGCATAGTAGCATGTCAAGATA 57.193 39.130 0.00 0.00 37.58 1.98
202 203 6.173427 TGGCATAGTAGCATGTCAAGATAA 57.827 37.500 0.00 0.00 37.58 1.75
203 204 6.772605 TGGCATAGTAGCATGTCAAGATAAT 58.227 36.000 0.00 0.00 37.58 1.28
204 205 7.226441 TGGCATAGTAGCATGTCAAGATAATT 58.774 34.615 0.00 0.00 37.58 1.40
205 206 7.173735 TGGCATAGTAGCATGTCAAGATAATTG 59.826 37.037 0.00 0.00 37.58 2.32
206 207 7.388776 GGCATAGTAGCATGTCAAGATAATTGA 59.611 37.037 0.00 0.00 35.83 2.57
207 208 8.441608 GCATAGTAGCATGTCAAGATAATTGAG 58.558 37.037 0.00 0.00 0.00 3.02
208 209 6.857777 AGTAGCATGTCAAGATAATTGAGC 57.142 37.500 0.00 0.00 0.00 4.26
209 210 6.590068 AGTAGCATGTCAAGATAATTGAGCT 58.410 36.000 7.64 7.64 33.77 4.09
210 211 7.730084 AGTAGCATGTCAAGATAATTGAGCTA 58.270 34.615 0.00 6.15 32.28 3.32
211 212 6.857777 AGCATGTCAAGATAATTGAGCTAC 57.142 37.500 0.00 0.00 29.42 3.58
212 213 6.590068 AGCATGTCAAGATAATTGAGCTACT 58.410 36.000 0.00 0.00 29.42 2.57
213 214 7.052873 AGCATGTCAAGATAATTGAGCTACTT 58.947 34.615 0.00 0.00 29.42 2.24
214 215 7.012138 AGCATGTCAAGATAATTGAGCTACTTG 59.988 37.037 0.00 0.00 36.91 3.16
215 216 7.637229 CATGTCAAGATAATTGAGCTACTTGG 58.363 38.462 0.00 0.00 36.45 3.61
216 217 6.115446 TGTCAAGATAATTGAGCTACTTGGG 58.885 40.000 0.00 0.00 36.45 4.12
217 218 5.529060 GTCAAGATAATTGAGCTACTTGGGG 59.471 44.000 0.00 0.00 36.45 4.96
218 219 5.428457 TCAAGATAATTGAGCTACTTGGGGA 59.572 40.000 0.00 0.00 36.45 4.81
219 220 6.101734 TCAAGATAATTGAGCTACTTGGGGAT 59.898 38.462 0.00 0.00 36.45 3.85
220 221 6.120507 AGATAATTGAGCTACTTGGGGATC 57.879 41.667 0.00 0.00 0.00 3.36
221 222 5.608437 AGATAATTGAGCTACTTGGGGATCA 59.392 40.000 0.00 0.00 0.00 2.92
222 223 4.591321 AATTGAGCTACTTGGGGATCAA 57.409 40.909 0.00 0.00 0.00 2.57
223 224 4.803329 ATTGAGCTACTTGGGGATCAAT 57.197 40.909 0.00 0.00 34.45 2.57
224 225 4.591321 TTGAGCTACTTGGGGATCAATT 57.409 40.909 0.00 0.00 34.45 2.32
225 226 5.708736 TTGAGCTACTTGGGGATCAATTA 57.291 39.130 0.00 0.00 34.45 1.40
226 227 5.912149 TGAGCTACTTGGGGATCAATTAT 57.088 39.130 0.00 0.00 34.45 1.28
227 228 6.266131 TGAGCTACTTGGGGATCAATTATT 57.734 37.500 0.00 0.00 34.45 1.40
228 229 6.672593 TGAGCTACTTGGGGATCAATTATTT 58.327 36.000 0.00 0.00 34.45 1.40
229 230 7.125391 TGAGCTACTTGGGGATCAATTATTTT 58.875 34.615 0.00 0.00 34.45 1.82
230 231 7.068593 TGAGCTACTTGGGGATCAATTATTTTG 59.931 37.037 0.00 0.00 34.45 2.44
231 232 6.324770 AGCTACTTGGGGATCAATTATTTTGG 59.675 38.462 0.00 0.00 34.45 3.28
232 233 6.098266 GCTACTTGGGGATCAATTATTTTGGT 59.902 38.462 0.00 0.00 34.45 3.67
233 234 7.286775 GCTACTTGGGGATCAATTATTTTGGTA 59.713 37.037 0.00 0.00 34.45 3.25
234 235 9.367160 CTACTTGGGGATCAATTATTTTGGTAT 57.633 33.333 0.00 0.00 34.45 2.73
236 237 9.897040 ACTTGGGGATCAATTATTTTGGTATAT 57.103 29.630 0.00 0.00 34.45 0.86
274 275 7.685849 TCCATACCTACTAATAAAGCAAGGT 57.314 36.000 0.00 0.00 43.76 3.50
275 276 7.506114 TCCATACCTACTAATAAAGCAAGGTG 58.494 38.462 2.14 0.00 42.25 4.00
276 277 6.204882 CCATACCTACTAATAAAGCAAGGTGC 59.795 42.308 2.14 0.00 42.25 5.01
285 286 2.556287 GCAAGGTGCGTTTCTCCG 59.444 61.111 0.00 0.00 31.71 4.63
286 287 2.251642 GCAAGGTGCGTTTCTCCGT 61.252 57.895 0.00 0.00 31.71 4.69
287 288 1.782028 GCAAGGTGCGTTTCTCCGTT 61.782 55.000 0.00 0.00 31.71 4.44
288 289 0.661020 CAAGGTGCGTTTCTCCGTTT 59.339 50.000 0.00 0.00 33.65 3.60
289 290 1.064952 CAAGGTGCGTTTCTCCGTTTT 59.935 47.619 0.00 0.00 33.65 2.43
290 291 1.385528 AGGTGCGTTTCTCCGTTTTT 58.614 45.000 0.00 0.00 33.65 1.94
311 312 6.406692 TTTTTATCCATTCACCGTCCAAAA 57.593 33.333 0.00 0.00 0.00 2.44
312 313 5.637006 TTTATCCATTCACCGTCCAAAAG 57.363 39.130 0.00 0.00 0.00 2.27
313 314 2.940994 TCCATTCACCGTCCAAAAGA 57.059 45.000 0.00 0.00 0.00 2.52
314 315 3.433306 TCCATTCACCGTCCAAAAGAT 57.567 42.857 0.00 0.00 0.00 2.40
315 316 3.761897 TCCATTCACCGTCCAAAAGATT 58.238 40.909 0.00 0.00 0.00 2.40
316 317 4.148838 TCCATTCACCGTCCAAAAGATTT 58.851 39.130 0.00 0.00 0.00 2.17
317 318 4.586841 TCCATTCACCGTCCAAAAGATTTT 59.413 37.500 0.00 0.00 0.00 1.82
318 319 5.069781 TCCATTCACCGTCCAAAAGATTTTT 59.930 36.000 0.00 0.00 0.00 1.94
337 338 5.382618 TTTTTCTACTCGAGGTGGTACTC 57.617 43.478 18.41 0.00 0.00 2.59
338 339 3.708403 TTCTACTCGAGGTGGTACTCA 57.292 47.619 18.41 0.00 37.34 3.41
339 340 3.708403 TCTACTCGAGGTGGTACTCAA 57.292 47.619 18.41 0.00 37.34 3.02
340 341 4.232188 TCTACTCGAGGTGGTACTCAAT 57.768 45.455 18.41 0.00 37.34 2.57
341 342 4.597004 TCTACTCGAGGTGGTACTCAATT 58.403 43.478 18.41 0.00 37.34 2.32
342 343 5.014858 TCTACTCGAGGTGGTACTCAATTT 58.985 41.667 18.41 0.00 37.34 1.82
343 344 4.618920 ACTCGAGGTGGTACTCAATTTT 57.381 40.909 18.41 0.00 37.34 1.82
344 345 5.733620 ACTCGAGGTGGTACTCAATTTTA 57.266 39.130 18.41 0.00 37.34 1.52
345 346 6.295719 ACTCGAGGTGGTACTCAATTTTAT 57.704 37.500 18.41 0.00 37.34 1.40
346 347 6.338937 ACTCGAGGTGGTACTCAATTTTATC 58.661 40.000 18.41 0.00 37.34 1.75
347 348 5.667466 TCGAGGTGGTACTCAATTTTATCC 58.333 41.667 0.00 0.00 37.34 2.59
348 349 5.188163 TCGAGGTGGTACTCAATTTTATCCA 59.812 40.000 0.00 0.00 37.34 3.41
349 350 6.055588 CGAGGTGGTACTCAATTTTATCCAT 58.944 40.000 0.00 0.00 37.34 3.41
350 351 7.070198 TCGAGGTGGTACTCAATTTTATCCATA 59.930 37.037 0.00 0.00 37.34 2.74
351 352 7.170998 CGAGGTGGTACTCAATTTTATCCATAC 59.829 40.741 0.00 0.00 37.34 2.39
352 353 7.287810 AGGTGGTACTCAATTTTATCCATACC 58.712 38.462 0.00 0.00 33.00 2.73
353 354 7.128883 AGGTGGTACTCAATTTTATCCATACCT 59.871 37.037 0.00 0.00 33.46 3.08
354 355 8.434392 GGTGGTACTCAATTTTATCCATACCTA 58.566 37.037 0.00 0.00 33.46 3.08
355 356 9.269453 GTGGTACTCAATTTTATCCATACCTAC 57.731 37.037 0.00 0.00 33.46 3.18
356 357 9.220906 TGGTACTCAATTTTATCCATACCTACT 57.779 33.333 0.00 0.00 33.46 2.57
357 358 9.708092 GGTACTCAATTTTATCCATACCTACTC 57.292 37.037 0.00 0.00 0.00 2.59
358 359 9.408069 GTACTCAATTTTATCCATACCTACTCG 57.592 37.037 0.00 0.00 0.00 4.18
359 360 6.929606 ACTCAATTTTATCCATACCTACTCGC 59.070 38.462 0.00 0.00 0.00 5.03
360 361 7.062749 TCAATTTTATCCATACCTACTCGCT 57.937 36.000 0.00 0.00 0.00 4.93
361 362 6.929049 TCAATTTTATCCATACCTACTCGCTG 59.071 38.462 0.00 0.00 0.00 5.18
362 363 4.866508 TTTATCCATACCTACTCGCTGG 57.133 45.455 0.00 0.00 0.00 4.85
363 364 2.677542 ATCCATACCTACTCGCTGGA 57.322 50.000 0.00 0.00 40.12 3.86
364 365 2.677542 TCCATACCTACTCGCTGGAT 57.322 50.000 0.00 0.00 31.19 3.41
365 366 2.515854 TCCATACCTACTCGCTGGATC 58.484 52.381 0.00 0.00 31.19 3.36
366 367 2.108425 TCCATACCTACTCGCTGGATCT 59.892 50.000 0.00 0.00 31.19 2.75
367 368 2.490115 CCATACCTACTCGCTGGATCTC 59.510 54.545 0.00 0.00 0.00 2.75
368 369 3.417101 CATACCTACTCGCTGGATCTCT 58.583 50.000 0.00 0.00 0.00 3.10
369 370 4.565861 CCATACCTACTCGCTGGATCTCTA 60.566 50.000 0.00 0.00 0.00 2.43
370 371 3.134574 ACCTACTCGCTGGATCTCTAG 57.865 52.381 0.00 0.00 0.00 2.43
371 372 2.224670 ACCTACTCGCTGGATCTCTAGG 60.225 54.545 0.00 0.00 0.00 3.02
382 383 2.159085 GGATCTCTAGGTTTGGTCACCG 60.159 54.545 0.00 0.00 42.33 4.94
393 394 3.083997 GTCACCGCCCTCCCTCAT 61.084 66.667 0.00 0.00 0.00 2.90
395 396 1.457643 TCACCGCCCTCCCTCATAG 60.458 63.158 0.00 0.00 0.00 2.23
399 400 2.219875 CGCCCTCCCTCATAGGCAT 61.220 63.158 0.30 0.00 46.08 4.40
481 486 3.016736 ACCACCGATTCATTGGTTCATC 58.983 45.455 0.00 0.00 41.90 2.92
483 488 2.935849 CACCGATTCATTGGTTCATCGA 59.064 45.455 2.06 0.00 41.90 3.59
487 492 3.301835 CGATTCATTGGTTCATCGACGAC 60.302 47.826 0.00 0.00 40.83 4.34
555 561 9.542462 TCAAGTCAAATTATACTACACATAGGC 57.458 33.333 0.00 0.00 32.08 3.93
556 562 8.774586 CAAGTCAAATTATACTACACATAGGCC 58.225 37.037 0.00 0.00 32.08 5.19
557 563 7.450903 AGTCAAATTATACTACACATAGGCCC 58.549 38.462 0.00 0.00 32.08 5.80
558 564 7.292591 AGTCAAATTATACTACACATAGGCCCT 59.707 37.037 0.00 0.00 32.08 5.19
559 565 7.387948 GTCAAATTATACTACACATAGGCCCTG 59.612 40.741 0.00 0.00 32.08 4.45
560 566 7.071950 TCAAATTATACTACACATAGGCCCTGT 59.928 37.037 0.00 0.00 32.08 4.00
561 567 7.388638 AATTATACTACACATAGGCCCTGTT 57.611 36.000 0.00 0.00 32.08 3.16
562 568 4.957684 ATACTACACATAGGCCCTGTTC 57.042 45.455 0.00 0.00 32.08 3.18
563 569 1.480954 ACTACACATAGGCCCTGTTCG 59.519 52.381 0.00 0.00 32.08 3.95
564 570 0.828022 TACACATAGGCCCTGTTCGG 59.172 55.000 0.00 0.00 0.00 4.30
565 571 0.907704 ACACATAGGCCCTGTTCGGA 60.908 55.000 0.00 0.00 33.16 4.55
566 572 0.251916 CACATAGGCCCTGTTCGGAA 59.748 55.000 0.00 0.00 33.16 4.30
567 573 0.988832 ACATAGGCCCTGTTCGGAAA 59.011 50.000 0.00 0.00 33.16 3.13
568 574 1.564348 ACATAGGCCCTGTTCGGAAAT 59.436 47.619 0.00 0.00 33.16 2.17
569 575 2.222027 CATAGGCCCTGTTCGGAAATC 58.778 52.381 0.00 0.00 33.16 2.17
570 576 0.177141 TAGGCCCTGTTCGGAAATCG 59.823 55.000 0.00 0.00 40.90 3.34
571 577 1.376812 GGCCCTGTTCGGAAATCGT 60.377 57.895 0.00 0.00 40.32 3.73
572 578 1.366854 GGCCCTGTTCGGAAATCGTC 61.367 60.000 0.00 0.00 40.32 4.20
573 579 1.366854 GCCCTGTTCGGAAATCGTCC 61.367 60.000 0.00 0.00 43.90 4.79
585 591 5.873179 GGAAATCGTCCAACTTCACATAA 57.127 39.130 0.00 0.00 46.97 1.90
586 592 6.436843 GGAAATCGTCCAACTTCACATAAT 57.563 37.500 0.00 0.00 46.97 1.28
587 593 7.548196 GGAAATCGTCCAACTTCACATAATA 57.452 36.000 0.00 0.00 46.97 0.98
588 594 7.407337 GGAAATCGTCCAACTTCACATAATAC 58.593 38.462 0.00 0.00 46.97 1.89
589 595 6.583912 AATCGTCCAACTTCACATAATACG 57.416 37.500 0.00 0.00 0.00 3.06
590 596 4.426416 TCGTCCAACTTCACATAATACGG 58.574 43.478 0.00 0.00 0.00 4.02
591 597 3.554324 CGTCCAACTTCACATAATACGGG 59.446 47.826 0.00 0.00 0.00 5.28
592 598 4.678574 CGTCCAACTTCACATAATACGGGA 60.679 45.833 0.00 0.00 0.00 5.14
593 599 4.809426 GTCCAACTTCACATAATACGGGAG 59.191 45.833 0.00 0.00 0.00 4.30
594 600 3.560068 CCAACTTCACATAATACGGGAGC 59.440 47.826 0.00 0.00 0.00 4.70
595 601 3.470645 ACTTCACATAATACGGGAGCC 57.529 47.619 0.00 0.00 0.00 4.70
606 612 3.502572 GGGAGCCGATTGAAGCAC 58.497 61.111 0.00 0.00 0.00 4.40
607 613 2.115291 GGGAGCCGATTGAAGCACC 61.115 63.158 0.00 0.00 38.83 5.01
608 614 1.377202 GGAGCCGATTGAAGCACCA 60.377 57.895 0.00 0.00 39.30 4.17
609 615 1.648467 GGAGCCGATTGAAGCACCAC 61.648 60.000 0.00 0.00 39.30 4.16
610 616 0.674895 GAGCCGATTGAAGCACCACT 60.675 55.000 0.00 0.00 0.00 4.00
611 617 0.250901 AGCCGATTGAAGCACCACTT 60.251 50.000 0.00 0.00 42.98 3.16
612 618 0.598065 GCCGATTGAAGCACCACTTT 59.402 50.000 0.00 0.00 39.29 2.66
613 619 1.401539 GCCGATTGAAGCACCACTTTC 60.402 52.381 0.00 0.00 39.29 2.62
614 620 1.135972 CCGATTGAAGCACCACTTTCG 60.136 52.381 0.00 0.00 39.29 3.46
615 621 1.725931 CGATTGAAGCACCACTTTCGC 60.726 52.381 0.00 0.00 39.29 4.70
616 622 1.266718 GATTGAAGCACCACTTTCGCA 59.733 47.619 0.00 0.00 39.29 5.10
617 623 1.098869 TTGAAGCACCACTTTCGCAA 58.901 45.000 0.00 0.00 39.29 4.85
618 624 0.380378 TGAAGCACCACTTTCGCAAC 59.620 50.000 0.00 0.00 39.29 4.17
619 625 0.663153 GAAGCACCACTTTCGCAACT 59.337 50.000 0.00 0.00 39.29 3.16
620 626 0.663153 AAGCACCACTTTCGCAACTC 59.337 50.000 0.00 0.00 33.71 3.01
621 627 1.166531 AGCACCACTTTCGCAACTCC 61.167 55.000 0.00 0.00 0.00 3.85
622 628 1.949257 CACCACTTTCGCAACTCCC 59.051 57.895 0.00 0.00 0.00 4.30
623 629 0.817634 CACCACTTTCGCAACTCCCA 60.818 55.000 0.00 0.00 0.00 4.37
624 630 0.535102 ACCACTTTCGCAACTCCCAG 60.535 55.000 0.00 0.00 0.00 4.45
625 631 0.250295 CCACTTTCGCAACTCCCAGA 60.250 55.000 0.00 0.00 0.00 3.86
626 632 1.593196 CACTTTCGCAACTCCCAGAA 58.407 50.000 0.00 0.00 0.00 3.02
627 633 1.946768 CACTTTCGCAACTCCCAGAAA 59.053 47.619 0.00 0.00 0.00 2.52
628 634 2.357637 CACTTTCGCAACTCCCAGAAAA 59.642 45.455 0.00 0.00 33.01 2.29
629 635 3.004734 CACTTTCGCAACTCCCAGAAAAT 59.995 43.478 0.00 0.00 33.01 1.82
630 636 4.215399 CACTTTCGCAACTCCCAGAAAATA 59.785 41.667 0.00 0.00 33.01 1.40
631 637 4.215613 ACTTTCGCAACTCCCAGAAAATAC 59.784 41.667 0.00 0.00 33.01 1.89
632 638 3.410631 TCGCAACTCCCAGAAAATACA 57.589 42.857 0.00 0.00 0.00 2.29
633 639 3.071479 TCGCAACTCCCAGAAAATACAC 58.929 45.455 0.00 0.00 0.00 2.90
634 640 2.161609 CGCAACTCCCAGAAAATACACC 59.838 50.000 0.00 0.00 0.00 4.16
635 641 2.161609 GCAACTCCCAGAAAATACACCG 59.838 50.000 0.00 0.00 0.00 4.94
636 642 2.109425 ACTCCCAGAAAATACACCGC 57.891 50.000 0.00 0.00 0.00 5.68
637 643 1.349688 ACTCCCAGAAAATACACCGCA 59.650 47.619 0.00 0.00 0.00 5.69
638 644 2.224670 ACTCCCAGAAAATACACCGCAA 60.225 45.455 0.00 0.00 0.00 4.85
639 645 2.420022 CTCCCAGAAAATACACCGCAAG 59.580 50.000 0.00 0.00 0.00 4.01
640 646 1.135402 CCCAGAAAATACACCGCAAGC 60.135 52.381 0.00 0.00 0.00 4.01
641 647 1.135402 CCAGAAAATACACCGCAAGCC 60.135 52.381 0.00 0.00 0.00 4.35
642 648 0.802494 AGAAAATACACCGCAAGCCG 59.198 50.000 0.00 0.00 0.00 5.52
643 649 0.796870 GAAAATACACCGCAAGCCGC 60.797 55.000 0.00 0.00 35.03 6.53
644 650 1.241315 AAAATACACCGCAAGCCGCT 61.241 50.000 0.00 0.00 39.08 5.52
645 651 1.644786 AAATACACCGCAAGCCGCTC 61.645 55.000 0.00 0.00 39.08 5.03
646 652 4.752879 TACACCGCAAGCCGCTCC 62.753 66.667 0.00 0.00 39.08 4.70
665 671 4.521062 CTCCGGCCGCTTCAGGAG 62.521 72.222 22.85 16.16 43.43 3.69
689 695 3.719883 CTGCAGAGCCGGAGAGCTG 62.720 68.421 8.42 7.31 45.15 4.24
691 697 4.527583 CAGAGCCGGAGAGCTGCC 62.528 72.222 5.05 0.00 45.15 4.85
714 720 5.065218 CCGAACAGGCTATAATATTGGATGC 59.935 44.000 0.00 0.00 0.00 3.91
718 724 5.412594 ACAGGCTATAATATTGGATGCAACG 59.587 40.000 0.12 0.00 0.00 4.10
719 725 4.396166 AGGCTATAATATTGGATGCAACGC 59.604 41.667 0.12 0.00 0.00 4.84
743 749 6.414987 GCTCATTAATAATCGAAAGGTGTTGC 59.585 38.462 0.00 0.00 0.00 4.17
790 796 1.004745 GAACCCATCCACCACACATCT 59.995 52.381 0.00 0.00 0.00 2.90
792 798 0.914644 CCCATCCACCACACATCTCT 59.085 55.000 0.00 0.00 0.00 3.10
793 799 1.134280 CCCATCCACCACACATCTCTC 60.134 57.143 0.00 0.00 0.00 3.20
794 800 1.472201 CCATCCACCACACATCTCTCG 60.472 57.143 0.00 0.00 0.00 4.04
1222 2089 4.363990 CCTCGTGCTGTCGGTGCT 62.364 66.667 0.00 0.00 0.00 4.40
1301 2173 1.508088 CCTTGGCCGTGCAATCTTC 59.492 57.895 0.00 0.00 0.00 2.87
1311 2184 0.674581 TGCAATCTTCCGTGCAGAGG 60.675 55.000 1.80 1.80 45.52 3.69
1325 2198 0.883833 CAGAGGGAGCAATGCGTTTT 59.116 50.000 0.00 0.00 0.00 2.43
1332 2205 1.200020 GAGCAATGCGTTTTGTAGCCT 59.800 47.619 0.00 0.00 0.00 4.58
1350 2223 3.415212 GCCTCTGGCTATTGCATTATGA 58.585 45.455 0.66 0.00 46.69 2.15
1352 2225 5.188434 GCCTCTGGCTATTGCATTATGATA 58.812 41.667 0.66 0.00 46.69 2.15
1359 2237 5.817296 GGCTATTGCATTATGATATGGACGA 59.183 40.000 0.66 0.00 41.91 4.20
1397 3038 5.126067 GCTAAGAACTTGGCATGATTAGGA 58.874 41.667 15.84 0.00 44.93 2.94
1467 3114 5.645497 CCTAACAAGCATCCATAGATTAGCC 59.355 44.000 0.00 0.00 0.00 3.93
1480 3127 3.462021 AGATTAGCCTGCTCGATTTGTC 58.538 45.455 0.00 0.00 0.00 3.18
1488 3135 1.739466 TGCTCGATTTGTCCAATGCTC 59.261 47.619 0.00 0.00 0.00 4.26
1514 3169 0.034767 CAGATTTCTGAGCCTGCCCA 60.035 55.000 1.15 0.00 46.59 5.36
1524 3179 2.277737 CCTGCCCATGCCATGACT 59.722 61.111 6.18 0.00 36.33 3.41
1525 3180 2.125326 CCTGCCCATGCCATGACTG 61.125 63.158 6.18 2.26 36.33 3.51
1526 3181 1.077285 CTGCCCATGCCATGACTGA 60.077 57.895 6.18 0.00 36.33 3.41
1527 3182 0.467474 CTGCCCATGCCATGACTGAT 60.467 55.000 6.18 0.00 36.33 2.90
1598 3254 8.997323 CAAGATGTCTTCAGTTATTCAGAAGTT 58.003 33.333 0.00 0.00 39.58 2.66
1649 3314 8.718102 AGTAATTATGTATGGTCACTGAACAC 57.282 34.615 0.00 0.00 29.56 3.32
1813 3702 1.523758 CCTTCCTTTGTCCTTGGTCG 58.476 55.000 0.00 0.00 0.00 4.79
1821 3710 6.713276 TCCTTTGTCCTTGGTCGAAAATATA 58.287 36.000 0.00 0.00 0.00 0.86
1829 3718 7.116519 GTCCTTGGTCGAAAATATATCTACTGC 59.883 40.741 0.00 0.00 0.00 4.40
1830 3719 7.015292 TCCTTGGTCGAAAATATATCTACTGCT 59.985 37.037 0.00 0.00 0.00 4.24
1831 3720 7.329717 CCTTGGTCGAAAATATATCTACTGCTC 59.670 40.741 0.00 0.00 0.00 4.26
1832 3721 7.526142 TGGTCGAAAATATATCTACTGCTCT 57.474 36.000 0.00 0.00 0.00 4.09
1833 3722 8.631480 TGGTCGAAAATATATCTACTGCTCTA 57.369 34.615 0.00 0.00 0.00 2.43
1834 3723 8.731605 TGGTCGAAAATATATCTACTGCTCTAG 58.268 37.037 0.00 0.00 0.00 2.43
1835 3724 8.948145 GGTCGAAAATATATCTACTGCTCTAGA 58.052 37.037 0.00 0.00 0.00 2.43
1859 3748 6.578023 ACTCTAGTTGCTATCTGTGGAAATC 58.422 40.000 0.00 0.00 0.00 2.17
1864 3753 4.944962 TGCTATCTGTGGAAATCGTTTG 57.055 40.909 0.00 0.00 0.00 2.93
1979 4599 8.562892 CATATTTACAGCTAGTCTTGATTTGGG 58.437 37.037 0.00 0.00 0.00 4.12
1985 4605 7.806180 ACAGCTAGTCTTGATTTGGGTATTAT 58.194 34.615 0.00 0.00 0.00 1.28
1986 4606 7.716998 ACAGCTAGTCTTGATTTGGGTATTATG 59.283 37.037 0.00 0.00 0.00 1.90
1987 4607 6.712547 AGCTAGTCTTGATTTGGGTATTATGC 59.287 38.462 0.00 0.00 0.00 3.14
1988 4608 6.712547 GCTAGTCTTGATTTGGGTATTATGCT 59.287 38.462 0.00 0.00 0.00 3.79
1989 4609 7.878127 GCTAGTCTTGATTTGGGTATTATGCTA 59.122 37.037 0.00 0.00 0.00 3.49
1990 4610 9.209175 CTAGTCTTGATTTGGGTATTATGCTAC 57.791 37.037 0.00 0.00 0.00 3.58
1991 4611 7.573710 AGTCTTGATTTGGGTATTATGCTACA 58.426 34.615 0.00 0.00 0.00 2.74
1992 4612 8.220559 AGTCTTGATTTGGGTATTATGCTACAT 58.779 33.333 0.00 0.00 0.00 2.29
2182 4935 4.082571 AGCATTGCCTTGTCTGTAAACATC 60.083 41.667 4.70 0.00 0.00 3.06
2183 4936 4.321156 GCATTGCCTTGTCTGTAAACATCA 60.321 41.667 0.00 0.00 0.00 3.07
2200 4956 9.840427 GTAAACATCAGCACTTTGTTATGTATT 57.160 29.630 0.00 0.00 33.44 1.89
2665 6013 7.068962 TGTCAATCTACACCGGAATCAGTAATA 59.931 37.037 9.46 0.00 0.00 0.98
2670 6018 7.613585 TCTACACCGGAATCAGTAATAAACAA 58.386 34.615 9.46 0.00 0.00 2.83
2690 6038 4.604930 ACAATGGAGGATGGTGATGGATAT 59.395 41.667 0.00 0.00 0.00 1.63
2731 6079 4.288105 AGATCTCATCACAAACACCCTTCT 59.712 41.667 0.00 0.00 0.00 2.85
2734 6082 6.867519 TCTCATCACAAACACCCTTCTATA 57.132 37.500 0.00 0.00 0.00 1.31
2806 6172 3.083997 ACCATGACGGGCTCCCTC 61.084 66.667 3.11 1.03 40.22 4.30
2886 6262 9.177608 GCATTATGTAAAGATGGCCATAGAATA 57.822 33.333 20.84 7.06 0.00 1.75
2913 6292 6.866770 CACTCGTCACCTATAAGTCTTGAAAA 59.133 38.462 0.00 0.00 0.00 2.29
3028 6411 6.373005 TGATGAGTTGTGAGATTCCCTTTA 57.627 37.500 0.00 0.00 0.00 1.85
3030 6413 8.089625 TGATGAGTTGTGAGATTCCCTTTATA 57.910 34.615 0.00 0.00 0.00 0.98
3054 6437 9.747898 ATAAACCACAAATTCTCATGGTACTAA 57.252 29.630 0.00 0.00 44.80 2.24
3407 7373 0.388778 TTCTTTACCATGTCGCGCGA 60.389 50.000 31.40 31.40 0.00 5.87
3577 10650 6.481976 TGATACTTTATCATTTAGTGGTGCGG 59.518 38.462 0.00 0.00 40.09 5.69
3608 10681 8.400947 TGAAAACATTGTCAAAGAAAGAGAGAG 58.599 33.333 0.00 0.00 0.00 3.20
3611 10684 8.511604 AACATTGTCAAAGAAAGAGAGAGAAA 57.488 30.769 0.00 0.00 0.00 2.52
3614 10687 7.778470 TTGTCAAAGAAAGAGAGAGAAAGAC 57.222 36.000 0.00 0.00 0.00 3.01
3650 10723 4.038642 TGGCAGTACTTTTCCATTTGAACC 59.961 41.667 0.00 0.00 31.05 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 9.171877 TGCATCATACATGTTACTTATGTTCAA 57.828 29.630 2.30 0.00 39.36 2.69
50 51 8.729805 TGCATCATACATGTTACTTATGTTCA 57.270 30.769 2.30 0.00 39.36 3.18
51 52 9.603298 CATGCATCATACATGTTACTTATGTTC 57.397 33.333 2.30 0.00 40.04 3.18
64 65 6.359804 ACTCACCTTAACATGCATCATACAT 58.640 36.000 0.00 0.00 0.00 2.29
65 66 5.744171 ACTCACCTTAACATGCATCATACA 58.256 37.500 0.00 0.00 0.00 2.29
66 67 6.683974 AACTCACCTTAACATGCATCATAC 57.316 37.500 0.00 0.00 0.00 2.39
67 68 7.701539 AAAACTCACCTTAACATGCATCATA 57.298 32.000 0.00 0.00 0.00 2.15
68 69 6.594788 AAAACTCACCTTAACATGCATCAT 57.405 33.333 0.00 0.00 0.00 2.45
69 70 6.403866 AAAAACTCACCTTAACATGCATCA 57.596 33.333 0.00 0.00 0.00 3.07
98 99 3.534554 CAACTCACTATGCCACTATGCA 58.465 45.455 0.00 0.00 46.94 3.96
99 100 2.874701 CCAACTCACTATGCCACTATGC 59.125 50.000 0.00 0.00 0.00 3.14
100 101 2.874701 GCCAACTCACTATGCCACTATG 59.125 50.000 0.00 0.00 0.00 2.23
101 102 2.505407 TGCCAACTCACTATGCCACTAT 59.495 45.455 0.00 0.00 0.00 2.12
102 103 1.905894 TGCCAACTCACTATGCCACTA 59.094 47.619 0.00 0.00 0.00 2.74
103 104 0.692476 TGCCAACTCACTATGCCACT 59.308 50.000 0.00 0.00 0.00 4.00
104 105 1.755179 ATGCCAACTCACTATGCCAC 58.245 50.000 0.00 0.00 0.00 5.01
105 106 2.505407 ACTATGCCAACTCACTATGCCA 59.495 45.455 0.00 0.00 0.00 4.92
106 107 3.199880 ACTATGCCAACTCACTATGCC 57.800 47.619 0.00 0.00 0.00 4.40
107 108 5.116180 TGTAACTATGCCAACTCACTATGC 58.884 41.667 0.00 0.00 0.00 3.14
108 109 5.755375 CCTGTAACTATGCCAACTCACTATG 59.245 44.000 0.00 0.00 0.00 2.23
109 110 5.425539 ACCTGTAACTATGCCAACTCACTAT 59.574 40.000 0.00 0.00 0.00 2.12
110 111 4.775780 ACCTGTAACTATGCCAACTCACTA 59.224 41.667 0.00 0.00 0.00 2.74
111 112 3.583086 ACCTGTAACTATGCCAACTCACT 59.417 43.478 0.00 0.00 0.00 3.41
112 113 3.939066 ACCTGTAACTATGCCAACTCAC 58.061 45.455 0.00 0.00 0.00 3.51
113 114 5.020795 TCTACCTGTAACTATGCCAACTCA 58.979 41.667 0.00 0.00 0.00 3.41
114 115 5.360144 TCTCTACCTGTAACTATGCCAACTC 59.640 44.000 0.00 0.00 0.00 3.01
115 116 5.269991 TCTCTACCTGTAACTATGCCAACT 58.730 41.667 0.00 0.00 0.00 3.16
116 117 5.360144 TCTCTCTACCTGTAACTATGCCAAC 59.640 44.000 0.00 0.00 0.00 3.77
117 118 5.516044 TCTCTCTACCTGTAACTATGCCAA 58.484 41.667 0.00 0.00 0.00 4.52
118 119 5.125367 TCTCTCTACCTGTAACTATGCCA 57.875 43.478 0.00 0.00 0.00 4.92
119 120 6.658188 ATTCTCTCTACCTGTAACTATGCC 57.342 41.667 0.00 0.00 0.00 4.40
127 128 9.745880 CGCTAAATTTAATTCTCTCTACCTGTA 57.254 33.333 0.00 0.00 0.00 2.74
128 129 7.711339 CCGCTAAATTTAATTCTCTCTACCTGT 59.289 37.037 0.00 0.00 0.00 4.00
129 130 7.711339 ACCGCTAAATTTAATTCTCTCTACCTG 59.289 37.037 0.00 0.00 0.00 4.00
130 131 7.711339 CACCGCTAAATTTAATTCTCTCTACCT 59.289 37.037 0.00 0.00 0.00 3.08
131 132 7.518529 GCACCGCTAAATTTAATTCTCTCTACC 60.519 40.741 0.00 0.00 0.00 3.18
132 133 7.011109 TGCACCGCTAAATTTAATTCTCTCTAC 59.989 37.037 0.00 0.00 0.00 2.59
133 134 7.045416 TGCACCGCTAAATTTAATTCTCTCTA 58.955 34.615 0.00 0.00 0.00 2.43
134 135 5.880332 TGCACCGCTAAATTTAATTCTCTCT 59.120 36.000 0.00 0.00 0.00 3.10
135 136 6.119144 TGCACCGCTAAATTTAATTCTCTC 57.881 37.500 0.00 0.00 0.00 3.20
136 137 6.498304 CATGCACCGCTAAATTTAATTCTCT 58.502 36.000 0.00 0.00 0.00 3.10
137 138 5.173854 GCATGCACCGCTAAATTTAATTCTC 59.826 40.000 14.21 0.00 0.00 2.87
138 139 5.043248 GCATGCACCGCTAAATTTAATTCT 58.957 37.500 14.21 0.00 0.00 2.40
139 140 4.803088 TGCATGCACCGCTAAATTTAATTC 59.197 37.500 18.46 0.00 0.00 2.17
140 141 4.753233 TGCATGCACCGCTAAATTTAATT 58.247 34.783 18.46 0.00 0.00 1.40
141 142 4.383850 TGCATGCACCGCTAAATTTAAT 57.616 36.364 18.46 0.00 0.00 1.40
142 143 3.857549 TGCATGCACCGCTAAATTTAA 57.142 38.095 18.46 0.00 0.00 1.52
143 144 3.379688 TCATGCATGCACCGCTAAATTTA 59.620 39.130 25.37 0.00 0.00 1.40
144 145 2.166050 TCATGCATGCACCGCTAAATTT 59.834 40.909 25.37 0.00 0.00 1.82
145 146 1.750206 TCATGCATGCACCGCTAAATT 59.250 42.857 25.37 0.00 0.00 1.82
146 147 1.391577 TCATGCATGCACCGCTAAAT 58.608 45.000 25.37 0.38 0.00 1.40
147 148 1.065851 CATCATGCATGCACCGCTAAA 59.934 47.619 25.37 3.72 0.00 1.85
148 149 0.664224 CATCATGCATGCACCGCTAA 59.336 50.000 25.37 5.23 0.00 3.09
149 150 0.464193 ACATCATGCATGCACCGCTA 60.464 50.000 25.37 7.14 35.65 4.26
150 151 1.721664 GACATCATGCATGCACCGCT 61.722 55.000 25.37 3.57 35.65 5.52
151 152 1.298863 GACATCATGCATGCACCGC 60.299 57.895 25.37 5.80 35.65 5.68
152 153 0.666374 ATGACATCATGCATGCACCG 59.334 50.000 25.37 17.57 35.65 4.94
153 154 2.134201 CATGACATCATGCATGCACC 57.866 50.000 25.37 10.86 45.92 5.01
162 163 3.893521 TGCCAACTCATCATGACATCAT 58.106 40.909 0.00 0.00 36.96 2.45
163 164 3.353370 TGCCAACTCATCATGACATCA 57.647 42.857 0.00 0.00 0.00 3.07
164 165 5.061853 ACTATGCCAACTCATCATGACATC 58.938 41.667 0.00 0.00 0.00 3.06
165 166 5.045012 ACTATGCCAACTCATCATGACAT 57.955 39.130 0.00 0.00 0.00 3.06
166 167 4.492494 ACTATGCCAACTCATCATGACA 57.508 40.909 0.00 0.00 0.00 3.58
167 168 4.450419 GCTACTATGCCAACTCATCATGAC 59.550 45.833 0.00 0.00 0.00 3.06
168 169 4.101430 TGCTACTATGCCAACTCATCATGA 59.899 41.667 0.00 0.00 0.00 3.07
169 170 4.383173 TGCTACTATGCCAACTCATCATG 58.617 43.478 0.00 0.00 0.00 3.07
170 171 4.694760 TGCTACTATGCCAACTCATCAT 57.305 40.909 0.00 0.00 0.00 2.45
171 172 4.141642 ACATGCTACTATGCCAACTCATCA 60.142 41.667 0.00 0.00 0.00 3.07
172 173 4.384056 ACATGCTACTATGCCAACTCATC 58.616 43.478 0.00 0.00 0.00 2.92
173 174 4.141642 TGACATGCTACTATGCCAACTCAT 60.142 41.667 0.00 0.00 0.00 2.90
174 175 3.197549 TGACATGCTACTATGCCAACTCA 59.802 43.478 0.00 0.00 0.00 3.41
175 176 3.797039 TGACATGCTACTATGCCAACTC 58.203 45.455 0.00 0.00 0.00 3.01
176 177 3.912496 TGACATGCTACTATGCCAACT 57.088 42.857 0.00 0.00 0.00 3.16
177 178 4.191544 TCTTGACATGCTACTATGCCAAC 58.808 43.478 0.00 0.00 29.34 3.77
178 179 4.486125 TCTTGACATGCTACTATGCCAA 57.514 40.909 0.00 0.00 31.17 4.52
179 180 4.694760 ATCTTGACATGCTACTATGCCA 57.305 40.909 0.00 0.00 0.00 4.92
180 181 7.388776 TCAATTATCTTGACATGCTACTATGCC 59.611 37.037 0.00 0.00 0.00 4.40
181 182 8.315391 TCAATTATCTTGACATGCTACTATGC 57.685 34.615 0.00 0.00 0.00 3.14
182 183 8.441608 GCTCAATTATCTTGACATGCTACTATG 58.558 37.037 0.00 0.00 0.00 2.23
183 184 8.373981 AGCTCAATTATCTTGACATGCTACTAT 58.626 33.333 0.00 0.00 29.42 2.12
184 185 7.730084 AGCTCAATTATCTTGACATGCTACTA 58.270 34.615 0.00 0.00 29.42 1.82
185 186 6.590068 AGCTCAATTATCTTGACATGCTACT 58.410 36.000 0.00 0.00 29.42 2.57
186 187 6.857777 AGCTCAATTATCTTGACATGCTAC 57.142 37.500 0.00 0.00 29.42 3.58
187 188 7.730084 AGTAGCTCAATTATCTTGACATGCTA 58.270 34.615 0.00 0.00 32.28 3.49
188 189 6.590068 AGTAGCTCAATTATCTTGACATGCT 58.410 36.000 0.00 5.78 33.77 3.79
189 190 6.857777 AGTAGCTCAATTATCTTGACATGC 57.142 37.500 0.00 0.00 0.00 4.06
190 191 7.255035 CCCAAGTAGCTCAATTATCTTGACATG 60.255 40.741 0.00 0.00 35.69 3.21
191 192 6.769822 CCCAAGTAGCTCAATTATCTTGACAT 59.230 38.462 0.00 0.00 35.69 3.06
192 193 6.115446 CCCAAGTAGCTCAATTATCTTGACA 58.885 40.000 0.00 0.00 35.69 3.58
193 194 5.529060 CCCCAAGTAGCTCAATTATCTTGAC 59.471 44.000 0.00 0.00 35.69 3.18
194 195 5.428457 TCCCCAAGTAGCTCAATTATCTTGA 59.572 40.000 0.00 0.00 35.69 3.02
195 196 5.684704 TCCCCAAGTAGCTCAATTATCTTG 58.315 41.667 0.00 0.00 34.14 3.02
196 197 5.975988 TCCCCAAGTAGCTCAATTATCTT 57.024 39.130 0.00 0.00 0.00 2.40
197 198 5.608437 TGATCCCCAAGTAGCTCAATTATCT 59.392 40.000 0.00 0.00 0.00 1.98
198 199 5.869579 TGATCCCCAAGTAGCTCAATTATC 58.130 41.667 0.00 0.00 0.00 1.75
199 200 5.912149 TGATCCCCAAGTAGCTCAATTAT 57.088 39.130 0.00 0.00 0.00 1.28
200 201 5.708736 TTGATCCCCAAGTAGCTCAATTA 57.291 39.130 0.00 0.00 0.00 1.40
201 202 4.591321 TTGATCCCCAAGTAGCTCAATT 57.409 40.909 0.00 0.00 0.00 2.32
202 203 4.803329 ATTGATCCCCAAGTAGCTCAAT 57.197 40.909 0.00 0.00 38.31 2.57
203 204 4.591321 AATTGATCCCCAAGTAGCTCAA 57.409 40.909 0.00 0.00 38.31 3.02
204 205 5.912149 ATAATTGATCCCCAAGTAGCTCA 57.088 39.130 0.00 0.00 38.50 4.26
205 206 7.428826 CAAAATAATTGATCCCCAAGTAGCTC 58.571 38.462 0.00 0.00 38.50 4.09
206 207 6.324770 CCAAAATAATTGATCCCCAAGTAGCT 59.675 38.462 0.00 0.00 38.50 3.32
207 208 6.098266 ACCAAAATAATTGATCCCCAAGTAGC 59.902 38.462 0.00 0.00 38.50 3.58
208 209 7.660030 ACCAAAATAATTGATCCCCAAGTAG 57.340 36.000 0.00 0.00 38.50 2.57
210 211 9.897040 ATATACCAAAATAATTGATCCCCAAGT 57.103 29.630 0.00 0.00 38.31 3.16
248 249 9.388672 ACCTTGCTTTATTAGTAGGTATGGATA 57.611 33.333 0.00 0.00 38.47 2.59
249 250 8.157476 CACCTTGCTTTATTAGTAGGTATGGAT 58.843 37.037 0.00 0.00 38.31 3.41
250 251 7.506114 CACCTTGCTTTATTAGTAGGTATGGA 58.494 38.462 0.00 0.00 38.31 3.41
251 252 6.204882 GCACCTTGCTTTATTAGTAGGTATGG 59.795 42.308 0.00 0.00 40.96 2.74
252 253 6.073765 CGCACCTTGCTTTATTAGTAGGTATG 60.074 42.308 0.00 0.00 42.25 2.39
253 254 5.989777 CGCACCTTGCTTTATTAGTAGGTAT 59.010 40.000 0.00 0.00 42.25 2.73
254 255 5.105228 ACGCACCTTGCTTTATTAGTAGGTA 60.105 40.000 0.00 0.00 42.25 3.08
255 256 4.189231 CGCACCTTGCTTTATTAGTAGGT 58.811 43.478 0.00 0.00 42.25 3.08
256 257 4.189231 ACGCACCTTGCTTTATTAGTAGG 58.811 43.478 0.00 0.00 42.25 3.18
257 258 5.796350 AACGCACCTTGCTTTATTAGTAG 57.204 39.130 0.00 0.00 42.25 2.57
258 259 5.935789 AGAAACGCACCTTGCTTTATTAGTA 59.064 36.000 0.00 0.00 42.25 1.82
259 260 4.760204 AGAAACGCACCTTGCTTTATTAGT 59.240 37.500 0.00 0.00 42.25 2.24
260 261 5.296813 AGAAACGCACCTTGCTTTATTAG 57.703 39.130 0.00 0.00 42.25 1.73
261 262 4.155280 GGAGAAACGCACCTTGCTTTATTA 59.845 41.667 0.00 0.00 42.25 0.98
262 263 3.057526 GGAGAAACGCACCTTGCTTTATT 60.058 43.478 0.00 0.00 42.25 1.40
263 264 2.488153 GGAGAAACGCACCTTGCTTTAT 59.512 45.455 0.00 0.00 42.25 1.40
264 265 1.877443 GGAGAAACGCACCTTGCTTTA 59.123 47.619 0.00 0.00 42.25 1.85
265 266 0.668535 GGAGAAACGCACCTTGCTTT 59.331 50.000 0.00 0.00 42.25 3.51
266 267 1.507141 CGGAGAAACGCACCTTGCTT 61.507 55.000 0.00 0.00 42.25 3.91
267 268 1.961277 CGGAGAAACGCACCTTGCT 60.961 57.895 0.00 0.00 42.25 3.91
268 269 1.782028 AACGGAGAAACGCACCTTGC 61.782 55.000 0.00 0.00 40.69 4.01
269 270 0.661020 AAACGGAGAAACGCACCTTG 59.339 50.000 0.00 0.00 37.37 3.61
270 271 1.385528 AAAACGGAGAAACGCACCTT 58.614 45.000 0.00 0.00 37.37 3.50
271 272 1.385528 AAAAACGGAGAAACGCACCT 58.614 45.000 0.00 0.00 37.37 4.00
272 273 3.930400 AAAAACGGAGAAACGCACC 57.070 47.368 0.00 0.00 37.37 5.01
288 289 6.265649 TCTTTTGGACGGTGAATGGATAAAAA 59.734 34.615 0.00 0.00 0.00 1.94
289 290 5.770663 TCTTTTGGACGGTGAATGGATAAAA 59.229 36.000 0.00 0.00 0.00 1.52
290 291 5.317808 TCTTTTGGACGGTGAATGGATAAA 58.682 37.500 0.00 0.00 0.00 1.40
291 292 4.912586 TCTTTTGGACGGTGAATGGATAA 58.087 39.130 0.00 0.00 0.00 1.75
292 293 4.561500 TCTTTTGGACGGTGAATGGATA 57.438 40.909 0.00 0.00 0.00 2.59
293 294 3.433306 TCTTTTGGACGGTGAATGGAT 57.567 42.857 0.00 0.00 0.00 3.41
294 295 2.940994 TCTTTTGGACGGTGAATGGA 57.059 45.000 0.00 0.00 0.00 3.41
295 296 4.519540 AAATCTTTTGGACGGTGAATGG 57.480 40.909 0.00 0.00 0.00 3.16
315 316 4.828939 TGAGTACCACCTCGAGTAGAAAAA 59.171 41.667 12.31 0.00 34.04 1.94
316 317 4.401022 TGAGTACCACCTCGAGTAGAAAA 58.599 43.478 12.31 0.00 34.04 2.29
317 318 4.025040 TGAGTACCACCTCGAGTAGAAA 57.975 45.455 12.31 0.00 34.04 2.52
318 319 3.708403 TGAGTACCACCTCGAGTAGAA 57.292 47.619 12.31 0.00 34.04 2.10
319 320 3.708403 TTGAGTACCACCTCGAGTAGA 57.292 47.619 12.31 0.00 34.04 2.59
320 321 4.985538 AATTGAGTACCACCTCGAGTAG 57.014 45.455 12.31 2.90 34.04 2.57
321 322 5.733620 AAAATTGAGTACCACCTCGAGTA 57.266 39.130 12.31 0.00 34.04 2.59
322 323 4.618920 AAAATTGAGTACCACCTCGAGT 57.381 40.909 12.31 0.00 34.04 4.18
323 324 5.753921 GGATAAAATTGAGTACCACCTCGAG 59.246 44.000 5.13 5.13 34.04 4.04
324 325 5.188163 TGGATAAAATTGAGTACCACCTCGA 59.812 40.000 0.00 0.00 34.04 4.04
325 326 5.424757 TGGATAAAATTGAGTACCACCTCG 58.575 41.667 0.00 0.00 34.04 4.63
326 327 7.444487 GGTATGGATAAAATTGAGTACCACCTC 59.556 40.741 0.00 0.00 32.58 3.85
327 328 7.128883 AGGTATGGATAAAATTGAGTACCACCT 59.871 37.037 0.00 0.00 34.28 4.00
328 329 7.287810 AGGTATGGATAAAATTGAGTACCACC 58.712 38.462 0.00 0.00 34.28 4.61
329 330 9.269453 GTAGGTATGGATAAAATTGAGTACCAC 57.731 37.037 0.00 0.00 34.28 4.16
330 331 9.220906 AGTAGGTATGGATAAAATTGAGTACCA 57.779 33.333 0.00 0.00 34.28 3.25
331 332 9.708092 GAGTAGGTATGGATAAAATTGAGTACC 57.292 37.037 0.00 0.00 0.00 3.34
332 333 9.408069 CGAGTAGGTATGGATAAAATTGAGTAC 57.592 37.037 0.00 0.00 0.00 2.73
333 334 8.086522 GCGAGTAGGTATGGATAAAATTGAGTA 58.913 37.037 0.00 0.00 0.00 2.59
334 335 6.929606 GCGAGTAGGTATGGATAAAATTGAGT 59.070 38.462 0.00 0.00 0.00 3.41
335 336 7.116948 CAGCGAGTAGGTATGGATAAAATTGAG 59.883 40.741 0.00 0.00 0.00 3.02
336 337 6.929049 CAGCGAGTAGGTATGGATAAAATTGA 59.071 38.462 0.00 0.00 0.00 2.57
337 338 6.147821 CCAGCGAGTAGGTATGGATAAAATTG 59.852 42.308 0.00 0.00 32.55 2.32
338 339 6.042781 TCCAGCGAGTAGGTATGGATAAAATT 59.957 38.462 0.00 0.00 35.16 1.82
339 340 5.542635 TCCAGCGAGTAGGTATGGATAAAAT 59.457 40.000 0.00 0.00 35.16 1.82
340 341 4.897076 TCCAGCGAGTAGGTATGGATAAAA 59.103 41.667 0.00 0.00 35.16 1.52
341 342 4.476297 TCCAGCGAGTAGGTATGGATAAA 58.524 43.478 0.00 0.00 35.16 1.40
342 343 4.108501 TCCAGCGAGTAGGTATGGATAA 57.891 45.455 0.00 0.00 35.16 1.75
343 344 3.801307 TCCAGCGAGTAGGTATGGATA 57.199 47.619 0.00 0.00 35.16 2.59
344 345 2.677542 TCCAGCGAGTAGGTATGGAT 57.322 50.000 0.00 0.00 35.16 3.41
345 346 2.108425 AGATCCAGCGAGTAGGTATGGA 59.892 50.000 0.00 0.00 43.82 3.41
346 347 2.490115 GAGATCCAGCGAGTAGGTATGG 59.510 54.545 0.00 0.00 0.00 2.74
347 348 3.417101 AGAGATCCAGCGAGTAGGTATG 58.583 50.000 0.00 0.00 0.00 2.39
348 349 3.799432 AGAGATCCAGCGAGTAGGTAT 57.201 47.619 0.00 0.00 0.00 2.73
349 350 3.008157 CCTAGAGATCCAGCGAGTAGGTA 59.992 52.174 0.00 0.00 0.00 3.08
350 351 2.224670 CCTAGAGATCCAGCGAGTAGGT 60.225 54.545 0.00 0.00 0.00 3.08
351 352 2.224670 ACCTAGAGATCCAGCGAGTAGG 60.225 54.545 0.00 0.00 33.20 3.18
352 353 3.134574 ACCTAGAGATCCAGCGAGTAG 57.865 52.381 0.00 0.00 0.00 2.57
353 354 3.579534 AACCTAGAGATCCAGCGAGTA 57.420 47.619 0.00 0.00 0.00 2.59
354 355 2.428890 CAAACCTAGAGATCCAGCGAGT 59.571 50.000 0.00 0.00 0.00 4.18
355 356 2.223923 CCAAACCTAGAGATCCAGCGAG 60.224 54.545 0.00 0.00 0.00 5.03
356 357 1.757118 CCAAACCTAGAGATCCAGCGA 59.243 52.381 0.00 0.00 0.00 4.93
357 358 1.482593 ACCAAACCTAGAGATCCAGCG 59.517 52.381 0.00 0.00 0.00 5.18
358 359 2.501723 TGACCAAACCTAGAGATCCAGC 59.498 50.000 0.00 0.00 0.00 4.85
359 360 3.118592 GGTGACCAAACCTAGAGATCCAG 60.119 52.174 0.00 0.00 37.24 3.86
360 361 2.838202 GGTGACCAAACCTAGAGATCCA 59.162 50.000 0.00 0.00 37.24 3.41
361 362 2.159085 CGGTGACCAAACCTAGAGATCC 60.159 54.545 1.11 0.00 38.14 3.36
362 363 2.738964 GCGGTGACCAAACCTAGAGATC 60.739 54.545 1.11 0.00 38.14 2.75
363 364 1.207329 GCGGTGACCAAACCTAGAGAT 59.793 52.381 1.11 0.00 38.14 2.75
364 365 0.606604 GCGGTGACCAAACCTAGAGA 59.393 55.000 1.11 0.00 38.14 3.10
365 366 0.391263 GGCGGTGACCAAACCTAGAG 60.391 60.000 1.11 0.00 38.14 2.43
366 367 1.675219 GGCGGTGACCAAACCTAGA 59.325 57.895 1.11 0.00 38.14 2.43
367 368 1.376812 GGGCGGTGACCAAACCTAG 60.377 63.158 1.11 0.00 38.14 3.02
368 369 1.833787 GAGGGCGGTGACCAAACCTA 61.834 60.000 8.49 0.00 38.14 3.08
369 370 3.175710 AGGGCGGTGACCAAACCT 61.176 61.111 1.11 2.36 38.14 3.50
370 371 2.671963 GAGGGCGGTGACCAAACC 60.672 66.667 1.11 0.00 36.82 3.27
371 372 2.671963 GGAGGGCGGTGACCAAAC 60.672 66.667 1.11 0.00 29.21 2.93
382 383 0.908198 CTATGCCTATGAGGGAGGGC 59.092 60.000 0.00 0.00 39.79 5.19
411 412 1.821258 GGCTCGATTCCCGGTTAGT 59.179 57.895 0.00 0.00 39.14 2.24
413 414 2.809706 CGGCTCGATTCCCGGTTA 59.190 61.111 0.00 0.00 40.79 2.85
419 420 2.107141 CCTCACCGGCTCGATTCC 59.893 66.667 0.00 0.00 0.00 3.01
432 433 2.338620 CGTGAACCGACTGCCTCA 59.661 61.111 0.00 0.00 39.56 3.86
456 461 1.284785 ACCAATGAATCGGTGGTCCAT 59.715 47.619 0.00 0.00 42.00 3.41
468 473 3.033368 TGTCGTCGATGAACCAATGAA 57.967 42.857 9.35 0.00 0.00 2.57
504 509 8.721133 AGGTCAATATTTTGGAAAACTAGGTT 57.279 30.769 0.00 0.00 33.44 3.50
506 511 8.348285 TGAGGTCAATATTTTGGAAAACTAGG 57.652 34.615 0.00 0.00 33.44 3.02
507 512 9.846248 CTTGAGGTCAATATTTTGGAAAACTAG 57.154 33.333 0.00 0.00 35.02 2.57
508 513 9.362151 ACTTGAGGTCAATATTTTGGAAAACTA 57.638 29.630 0.00 0.00 35.02 2.24
509 514 8.250143 ACTTGAGGTCAATATTTTGGAAAACT 57.750 30.769 0.00 0.00 35.02 2.66
510 515 8.520835 GACTTGAGGTCAATATTTTGGAAAAC 57.479 34.615 0.00 0.00 43.94 2.43
553 559 1.366854 GACGATTTCCGAACAGGGCC 61.367 60.000 0.00 0.00 41.76 5.80
554 560 1.366854 GGACGATTTCCGAACAGGGC 61.367 60.000 0.00 0.00 41.76 5.19
555 561 2.763651 GGACGATTTCCGAACAGGG 58.236 57.895 0.00 0.00 41.76 4.45
563 569 5.873179 TTATGTGAAGTTGGACGATTTCC 57.127 39.130 0.00 0.00 46.13 3.13
564 570 7.117454 CGTATTATGTGAAGTTGGACGATTTC 58.883 38.462 0.00 0.00 0.00 2.17
565 571 6.036735 CCGTATTATGTGAAGTTGGACGATTT 59.963 38.462 0.00 0.00 0.00 2.17
566 572 5.522460 CCGTATTATGTGAAGTTGGACGATT 59.478 40.000 0.00 0.00 0.00 3.34
567 573 5.047847 CCGTATTATGTGAAGTTGGACGAT 58.952 41.667 0.00 0.00 0.00 3.73
568 574 4.426416 CCGTATTATGTGAAGTTGGACGA 58.574 43.478 0.00 0.00 0.00 4.20
569 575 3.554324 CCCGTATTATGTGAAGTTGGACG 59.446 47.826 0.00 0.00 0.00 4.79
570 576 4.761975 TCCCGTATTATGTGAAGTTGGAC 58.238 43.478 0.00 0.00 0.00 4.02
571 577 4.682320 GCTCCCGTATTATGTGAAGTTGGA 60.682 45.833 0.00 0.00 0.00 3.53
572 578 3.560068 GCTCCCGTATTATGTGAAGTTGG 59.440 47.826 0.00 0.00 0.00 3.77
573 579 3.560068 GGCTCCCGTATTATGTGAAGTTG 59.440 47.826 0.00 0.00 0.00 3.16
574 580 3.740141 CGGCTCCCGTATTATGTGAAGTT 60.740 47.826 0.00 0.00 42.73 2.66
575 581 2.223971 CGGCTCCCGTATTATGTGAAGT 60.224 50.000 0.00 0.00 42.73 3.01
576 582 2.404215 CGGCTCCCGTATTATGTGAAG 58.596 52.381 0.00 0.00 42.73 3.02
577 583 2.519377 CGGCTCCCGTATTATGTGAA 57.481 50.000 0.00 0.00 42.73 3.18
589 595 2.115291 GGTGCTTCAATCGGCTCCC 61.115 63.158 0.00 0.00 36.47 4.30
590 596 1.377202 TGGTGCTTCAATCGGCTCC 60.377 57.895 0.00 0.00 40.99 4.70
591 597 0.674895 AGTGGTGCTTCAATCGGCTC 60.675 55.000 0.00 0.00 0.00 4.70
592 598 0.250901 AAGTGGTGCTTCAATCGGCT 60.251 50.000 0.00 0.00 30.06 5.52
593 599 0.598065 AAAGTGGTGCTTCAATCGGC 59.402 50.000 0.00 0.00 36.17 5.54
594 600 1.135972 CGAAAGTGGTGCTTCAATCGG 60.136 52.381 0.00 0.00 36.17 4.18
595 601 1.725931 GCGAAAGTGGTGCTTCAATCG 60.726 52.381 0.00 0.00 37.76 3.34
596 602 1.266718 TGCGAAAGTGGTGCTTCAATC 59.733 47.619 0.00 0.00 36.17 2.67
597 603 1.317613 TGCGAAAGTGGTGCTTCAAT 58.682 45.000 0.00 0.00 36.17 2.57
598 604 1.098869 TTGCGAAAGTGGTGCTTCAA 58.901 45.000 0.00 0.00 36.17 2.69
599 605 0.380378 GTTGCGAAAGTGGTGCTTCA 59.620 50.000 0.00 0.00 36.17 3.02
600 606 0.663153 AGTTGCGAAAGTGGTGCTTC 59.337 50.000 0.00 0.00 36.17 3.86
601 607 0.663153 GAGTTGCGAAAGTGGTGCTT 59.337 50.000 0.00 0.00 39.52 3.91
602 608 1.166531 GGAGTTGCGAAAGTGGTGCT 61.167 55.000 0.00 0.00 0.00 4.40
603 609 1.282875 GGAGTTGCGAAAGTGGTGC 59.717 57.895 0.00 0.00 0.00 5.01
604 610 0.817634 TGGGAGTTGCGAAAGTGGTG 60.818 55.000 0.00 0.00 0.00 4.17
605 611 0.535102 CTGGGAGTTGCGAAAGTGGT 60.535 55.000 0.00 0.00 0.00 4.16
606 612 0.250295 TCTGGGAGTTGCGAAAGTGG 60.250 55.000 0.00 0.00 0.00 4.00
607 613 1.593196 TTCTGGGAGTTGCGAAAGTG 58.407 50.000 0.00 0.00 0.00 3.16
608 614 2.341846 TTTCTGGGAGTTGCGAAAGT 57.658 45.000 0.00 0.00 0.00 2.66
609 615 3.923017 ATTTTCTGGGAGTTGCGAAAG 57.077 42.857 0.00 0.00 0.00 2.62
610 616 4.023536 GTGTATTTTCTGGGAGTTGCGAAA 60.024 41.667 0.00 0.00 0.00 3.46
611 617 3.500680 GTGTATTTTCTGGGAGTTGCGAA 59.499 43.478 0.00 0.00 0.00 4.70
612 618 3.071479 GTGTATTTTCTGGGAGTTGCGA 58.929 45.455 0.00 0.00 0.00 5.10
613 619 2.161609 GGTGTATTTTCTGGGAGTTGCG 59.838 50.000 0.00 0.00 0.00 4.85
614 620 2.161609 CGGTGTATTTTCTGGGAGTTGC 59.838 50.000 0.00 0.00 0.00 4.17
615 621 2.161609 GCGGTGTATTTTCTGGGAGTTG 59.838 50.000 0.00 0.00 0.00 3.16
616 622 2.224670 TGCGGTGTATTTTCTGGGAGTT 60.225 45.455 0.00 0.00 0.00 3.01
617 623 1.349688 TGCGGTGTATTTTCTGGGAGT 59.650 47.619 0.00 0.00 0.00 3.85
618 624 2.107950 TGCGGTGTATTTTCTGGGAG 57.892 50.000 0.00 0.00 0.00 4.30
619 625 2.432444 CTTGCGGTGTATTTTCTGGGA 58.568 47.619 0.00 0.00 0.00 4.37
620 626 1.135402 GCTTGCGGTGTATTTTCTGGG 60.135 52.381 0.00 0.00 0.00 4.45
621 627 1.135402 GGCTTGCGGTGTATTTTCTGG 60.135 52.381 0.00 0.00 0.00 3.86
622 628 1.465689 CGGCTTGCGGTGTATTTTCTG 60.466 52.381 0.00 0.00 0.00 3.02
623 629 0.802494 CGGCTTGCGGTGTATTTTCT 59.198 50.000 0.00 0.00 0.00 2.52
624 630 0.796870 GCGGCTTGCGGTGTATTTTC 60.797 55.000 0.00 0.00 0.00 2.29
625 631 1.211709 GCGGCTTGCGGTGTATTTT 59.788 52.632 0.00 0.00 0.00 1.82
626 632 2.874751 GCGGCTTGCGGTGTATTT 59.125 55.556 0.00 0.00 0.00 1.40
648 654 4.521062 CTCCTGAAGCGGCCGGAG 62.521 72.222 29.38 19.35 37.33 4.63
657 663 2.511145 GCAGCTCCGCTCCTGAAG 60.511 66.667 0.00 0.00 36.40 3.02
658 664 3.306595 CTGCAGCTCCGCTCCTGAA 62.307 63.158 0.00 0.00 36.40 3.02
659 665 3.767806 CTGCAGCTCCGCTCCTGA 61.768 66.667 0.00 0.00 36.40 3.86
660 666 3.719883 CTCTGCAGCTCCGCTCCTG 62.720 68.421 9.47 0.00 36.40 3.86
661 667 3.459965 CTCTGCAGCTCCGCTCCT 61.460 66.667 9.47 0.00 36.40 3.69
667 673 4.527583 CTCCGGCTCTGCAGCTCC 62.528 72.222 9.47 11.30 46.03 4.70
668 674 3.429080 CTCTCCGGCTCTGCAGCTC 62.429 68.421 9.47 2.39 46.03 4.09
669 675 3.459965 CTCTCCGGCTCTGCAGCT 61.460 66.667 9.47 0.00 46.03 4.24
671 677 3.459965 AGCTCTCCGGCTCTGCAG 61.460 66.667 7.63 7.63 38.24 4.41
672 678 3.767806 CAGCTCTCCGGCTCTGCA 61.768 66.667 0.00 0.00 41.00 4.41
674 680 4.527583 GGCAGCTCTCCGGCTCTG 62.528 72.222 0.00 1.97 41.00 3.35
679 685 3.997064 CTGTTCGGCAGCTCTCCGG 62.997 68.421 20.15 0.00 46.43 5.14
681 687 2.125350 CCTGTTCGGCAGCTCTCC 60.125 66.667 0.00 0.00 43.71 3.71
690 696 5.065218 GCATCCAATATTATAGCCTGTTCGG 59.935 44.000 0.00 0.00 0.00 4.30
691 697 5.643348 TGCATCCAATATTATAGCCTGTTCG 59.357 40.000 0.00 0.00 0.00 3.95
692 698 7.308435 GTTGCATCCAATATTATAGCCTGTTC 58.692 38.462 0.00 0.00 32.75 3.18
693 699 6.072508 CGTTGCATCCAATATTATAGCCTGTT 60.073 38.462 0.00 0.00 32.75 3.16
694 700 5.412594 CGTTGCATCCAATATTATAGCCTGT 59.587 40.000 0.00 0.00 32.75 4.00
695 701 5.674569 GCGTTGCATCCAATATTATAGCCTG 60.675 44.000 0.00 0.00 32.75 4.85
696 702 4.396166 GCGTTGCATCCAATATTATAGCCT 59.604 41.667 0.00 0.00 32.75 4.58
697 703 4.396166 AGCGTTGCATCCAATATTATAGCC 59.604 41.667 0.00 0.00 32.75 3.93
698 704 5.122239 TGAGCGTTGCATCCAATATTATAGC 59.878 40.000 0.00 0.00 32.75 2.97
699 705 6.726258 TGAGCGTTGCATCCAATATTATAG 57.274 37.500 0.00 0.00 32.75 1.31
700 706 7.686438 AATGAGCGTTGCATCCAATATTATA 57.314 32.000 0.00 0.00 32.75 0.98
701 707 6.579666 AATGAGCGTTGCATCCAATATTAT 57.420 33.333 0.00 0.00 32.75 1.28
702 708 7.503521 TTAATGAGCGTTGCATCCAATATTA 57.496 32.000 0.00 0.00 32.75 0.98
703 709 4.924305 AATGAGCGTTGCATCCAATATT 57.076 36.364 0.00 0.00 32.75 1.28
714 720 6.628856 CACCTTTCGATTATTAATGAGCGTTG 59.371 38.462 16.07 8.49 0.00 4.10
718 724 6.414987 GCAACACCTTTCGATTATTAATGAGC 59.585 38.462 0.00 0.00 0.00 4.26
719 725 7.697691 AGCAACACCTTTCGATTATTAATGAG 58.302 34.615 0.00 0.00 0.00 2.90
743 749 0.438830 GCACGAAGAACCAACGCTAG 59.561 55.000 0.00 0.00 0.00 3.42
777 783 1.338107 AACGAGAGATGTGTGGTGGA 58.662 50.000 0.00 0.00 0.00 4.02
790 796 0.108992 CCGGACCGAATGAAACGAGA 60.109 55.000 17.49 0.00 0.00 4.04
792 798 1.079681 CCCGGACCGAATGAAACGA 60.080 57.895 17.49 0.00 0.00 3.85
793 799 2.746803 GCCCGGACCGAATGAAACG 61.747 63.158 17.49 0.00 0.00 3.60
794 800 2.404186 GGCCCGGACCGAATGAAAC 61.404 63.158 17.49 0.00 0.00 2.78
1225 2093 2.844839 AGATCTGGGCGGGTAGGC 60.845 66.667 0.00 0.00 45.91 3.93
1301 2173 2.110967 CATTGCTCCCTCTGCACGG 61.111 63.158 0.00 0.00 40.40 4.94
1311 2184 1.617740 GCTACAAAACGCATTGCTCC 58.382 50.000 7.12 0.00 33.52 4.70
1332 2205 6.825213 GTCCATATCATAATGCAATAGCCAGA 59.175 38.462 0.00 0.00 41.13 3.86
1347 2220 1.613925 CCGGTGTCTCGTCCATATCAT 59.386 52.381 0.00 0.00 0.00 2.45
1350 2223 1.113517 CCCCGGTGTCTCGTCCATAT 61.114 60.000 0.00 0.00 0.00 1.78
1352 2225 2.873557 ATCCCCGGTGTCTCGTCCAT 62.874 60.000 0.00 0.00 0.00 3.41
1359 2237 0.263765 TTAGCCTATCCCCGGTGTCT 59.736 55.000 0.00 0.00 0.00 3.41
1420 3067 4.389374 ACATTCAAGTCACAGGTTACAGG 58.611 43.478 0.00 0.00 0.00 4.00
1423 3070 4.642429 AGGACATTCAAGTCACAGGTTAC 58.358 43.478 0.00 0.00 40.29 2.50
1467 3114 1.741706 AGCATTGGACAAATCGAGCAG 59.258 47.619 0.00 0.00 0.00 4.24
1511 3166 2.061509 TCAATCAGTCATGGCATGGG 57.938 50.000 26.15 16.13 0.00 4.00
1514 3169 7.776618 ATAATCAATCAATCAGTCATGGCAT 57.223 32.000 0.00 0.00 0.00 4.40
1649 3314 4.801891 GCCATGGCATGTTATACATTCAG 58.198 43.478 32.08 7.10 36.53 3.02
1744 3438 2.423538 AGAACAAATACTGCCATTCGCC 59.576 45.455 0.00 0.00 36.24 5.54
1746 3440 5.698832 TCAAAGAACAAATACTGCCATTCG 58.301 37.500 0.00 0.00 0.00 3.34
1748 3442 7.899973 AGAATCAAAGAACAAATACTGCCATT 58.100 30.769 0.00 0.00 0.00 3.16
1749 3443 7.177216 TGAGAATCAAAGAACAAATACTGCCAT 59.823 33.333 0.00 0.00 45.97 4.40
1750 3444 6.489700 TGAGAATCAAAGAACAAATACTGCCA 59.510 34.615 0.00 0.00 45.97 4.92
1751 3445 6.913170 TGAGAATCAAAGAACAAATACTGCC 58.087 36.000 0.00 0.00 45.97 4.85
1821 3710 5.763204 GCAACTAGAGTCTAGAGCAGTAGAT 59.237 44.000 29.87 4.92 31.66 1.98
1829 3718 6.204688 CCACAGATAGCAACTAGAGTCTAGAG 59.795 46.154 29.87 21.82 0.00 2.43
1830 3719 6.058833 CCACAGATAGCAACTAGAGTCTAGA 58.941 44.000 29.87 10.61 0.00 2.43
1831 3720 6.058833 TCCACAGATAGCAACTAGAGTCTAG 58.941 44.000 23.12 23.12 0.00 2.43
1832 3721 6.002653 TCCACAGATAGCAACTAGAGTCTA 57.997 41.667 0.00 0.00 0.00 2.59
1833 3722 4.861196 TCCACAGATAGCAACTAGAGTCT 58.139 43.478 0.00 0.00 0.00 3.24
1834 3723 5.584253 TTCCACAGATAGCAACTAGAGTC 57.416 43.478 0.00 0.00 0.00 3.36
1835 3724 6.552445 ATTTCCACAGATAGCAACTAGAGT 57.448 37.500 0.00 0.00 0.00 3.24
1859 3748 7.898309 CGGAGAGAAGAATAAACATAACAAACG 59.102 37.037 0.00 0.00 0.00 3.60
1864 3753 7.266400 AGTCCGGAGAGAAGAATAAACATAAC 58.734 38.462 3.06 0.00 0.00 1.89
1979 4599 7.378966 TCAGAGGTAGCAATGTAGCATAATAC 58.621 38.462 0.00 0.00 36.85 1.89
1985 4605 4.551702 TTTCAGAGGTAGCAATGTAGCA 57.448 40.909 0.00 0.00 36.85 3.49
1986 4606 9.442047 AATATATTTCAGAGGTAGCAATGTAGC 57.558 33.333 0.00 0.00 0.00 3.58
2182 4935 9.722056 GATAAGGAAATACATAACAAAGTGCTG 57.278 33.333 0.00 0.00 0.00 4.41
2183 4936 9.461312 TGATAAGGAAATACATAACAAAGTGCT 57.539 29.630 0.00 0.00 0.00 4.40
2213 4969 6.734137 AGCTTCGTTTGACATGTTTAATTGA 58.266 32.000 0.00 0.00 0.00 2.57
2665 6013 3.011595 TCCATCACCATCCTCCATTGTTT 59.988 43.478 0.00 0.00 0.00 2.83
2670 6018 4.411540 GCTATATCCATCACCATCCTCCAT 59.588 45.833 0.00 0.00 0.00 3.41
2690 6038 4.349048 AGATCTCTATTGGTTGGCATGCTA 59.651 41.667 18.92 9.16 0.00 3.49
2731 6079 7.738065 CCCTTTTTCCTTACCTCTATCCCTATA 59.262 40.741 0.00 0.00 0.00 1.31
2734 6082 4.727332 CCCTTTTTCCTTACCTCTATCCCT 59.273 45.833 0.00 0.00 0.00 4.20
2806 6172 8.897872 AACCCAGTATAAATTAACTATGGACG 57.102 34.615 0.00 0.00 0.00 4.79
2869 6245 6.169094 CGAGTGATATTCTATGGCCATCTTT 58.831 40.000 24.80 8.55 0.00 2.52
2886 6262 5.886474 TCAAGACTTATAGGTGACGAGTGAT 59.114 40.000 0.00 0.00 0.00 3.06
2887 6263 5.250982 TCAAGACTTATAGGTGACGAGTGA 58.749 41.667 0.00 0.00 0.00 3.41
2913 6292 6.357367 ACAACAACTAAGAAACTGATCACCT 58.643 36.000 0.00 0.00 0.00 4.00
2987 6370 7.121382 ACTCATCAAACAACTATCCAATCCAT 58.879 34.615 0.00 0.00 0.00 3.41
3028 6411 9.747898 TTAGTACCATGAGAATTTGTGGTTTAT 57.252 29.630 0.81 0.00 42.03 1.40
3030 6413 7.724061 AGTTAGTACCATGAGAATTTGTGGTTT 59.276 33.333 0.81 0.00 42.03 3.27
3054 6437 3.768757 CACCATCTTCCTCTCTTCTCAGT 59.231 47.826 0.00 0.00 0.00 3.41
3374 7340 7.389053 ACATGGTAAAGAAGAACATGAAGAGTC 59.611 37.037 7.62 0.00 40.92 3.36
3558 10631 3.616219 AGCCGCACCACTAAATGATAAA 58.384 40.909 0.00 0.00 0.00 1.40
3577 10650 7.915397 TCTTTCTTTGACAATGTTTTCAGTAGC 59.085 33.333 1.43 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.