Multiple sequence alignment - TraesCS5D01G421000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G421000 chr5D 100.000 2869 0 0 508 3376 481302349 481305217 0.000000e+00 5299.0
1 TraesCS5D01G421000 chr5D 84.615 1352 98 41 1100 2382 481183673 481184983 0.000000e+00 1243.0
2 TraesCS5D01G421000 chr5D 88.287 1016 66 21 1387 2372 481425928 481426920 0.000000e+00 1168.0
3 TraesCS5D01G421000 chr5D 89.818 275 18 3 1099 1372 481425508 481425773 8.970000e-91 344.0
4 TraesCS5D01G421000 chr5D 100.000 115 0 0 1 115 481301842 481301956 2.640000e-51 213.0
5 TraesCS5D01G421000 chr5D 86.747 166 5 2 508 673 481292982 481293130 5.790000e-38 169.0
6 TraesCS5D01G421000 chr5D 80.814 172 9 8 2535 2706 481185229 481185376 2.750000e-21 113.0
7 TraesCS5D01G421000 chr5D 82.500 120 12 7 2535 2650 481164471 481164585 2.770000e-16 97.1
8 TraesCS5D01G421000 chr5B 89.723 2384 142 40 705 3005 589893849 589896212 0.000000e+00 2950.0
9 TraesCS5D01G421000 chr5B 86.018 1366 106 36 1069 2372 589998315 589999657 0.000000e+00 1386.0
10 TraesCS5D01G421000 chr5B 86.168 976 89 15 1450 2382 589677262 589678234 0.000000e+00 1013.0
11 TraesCS5D01G421000 chr5B 87.970 266 18 5 1094 1358 589676844 589677096 5.470000e-78 302.0
12 TraesCS5D01G421000 chr5B 81.992 261 37 7 844 1097 589676530 589676787 2.640000e-51 213.0
13 TraesCS5D01G421000 chr5B 96.460 113 4 0 1 113 698061066 698060954 1.600000e-43 187.0
14 TraesCS5D01G421000 chr5A 89.266 1593 118 32 972 2531 600361353 600362925 0.000000e+00 1945.0
15 TraesCS5D01G421000 chr5A 88.647 1286 80 25 1100 2372 600438333 600439565 0.000000e+00 1506.0
16 TraesCS5D01G421000 chr5A 85.672 1340 106 32 1100 2382 600236884 600238194 0.000000e+00 1332.0
17 TraesCS5D01G421000 chr5A 97.959 147 3 0 2579 2725 600362941 600363087 4.320000e-64 255.0
18 TraesCS5D01G421000 chr5A 83.588 262 24 8 2778 3024 600363243 600363500 9.420000e-56 228.0
19 TraesCS5D01G421000 chr5A 82.129 263 39 6 844 1101 600236566 600236825 5.670000e-53 219.0
20 TraesCS5D01G421000 chr5A 87.097 155 10 9 2535 2687 600238440 600238586 2.080000e-37 167.0
21 TraesCS5D01G421000 chr5A 77.660 188 24 13 733 905 600361162 600361346 7.710000e-17 99.0
22 TraesCS5D01G421000 chr5A 86.517 89 6 1 2388 2476 600238230 600238312 3.590000e-15 93.5
23 TraesCS5D01G421000 chr4B 83.880 701 85 16 1107 1792 663942170 663941483 0.000000e+00 643.0
24 TraesCS5D01G421000 chr4B 84.007 544 70 7 1818 2353 663941375 663940841 1.080000e-139 507.0
25 TraesCS5D01G421000 chr2D 96.012 326 10 2 3038 3363 43520499 43520821 8.300000e-146 527.0
26 TraesCS5D01G421000 chr2D 93.353 346 13 3 3038 3376 66155881 66155539 1.400000e-138 503.0
27 TraesCS5D01G421000 chr2D 97.345 113 3 0 1 113 586848599 586848487 3.440000e-45 193.0
28 TraesCS5D01G421000 chr2D 88.095 168 3 2 508 675 586848468 586848318 2.070000e-42 183.0
29 TraesCS5D01G421000 chr7D 93.043 345 17 1 3038 3375 31173612 31173268 6.510000e-137 497.0
30 TraesCS5D01G421000 chr7D 93.235 340 13 2 3034 3366 2215393 2215729 3.030000e-135 492.0
31 TraesCS5D01G421000 chr7D 92.174 345 16 3 3038 3375 575713863 575714203 8.470000e-131 477.0
32 TraesCS5D01G421000 chr7D 97.345 113 3 0 1 113 611129374 611129262 3.440000e-45 193.0
33 TraesCS5D01G421000 chr7D 86.310 168 6 9 508 675 302762305 302762155 2.080000e-37 167.0
34 TraesCS5D01G421000 chrUn 92.754 345 18 1 3038 3375 252285932 252286276 3.030000e-135 492.0
35 TraesCS5D01G421000 chrUn 95.575 113 5 0 1 113 7185293 7185405 7.440000e-42 182.0
36 TraesCS5D01G421000 chr2B 94.393 321 13 3 3021 3340 800045264 800044948 3.920000e-134 488.0
37 TraesCS5D01G421000 chr2B 96.460 113 4 0 1 113 773139365 773139477 1.600000e-43 187.0
38 TraesCS5D01G421000 chr2B 86.982 169 5 2 508 676 680293668 680293517 1.250000e-39 174.0
39 TraesCS5D01G421000 chr7A 93.155 336 16 1 3038 3366 10089374 10089039 1.410000e-133 486.0
40 TraesCS5D01G421000 chr7A 84.118 170 9 3 508 676 182394096 182393944 7.550000e-32 148.0
41 TraesCS5D01G421000 chr2A 91.908 346 18 5 3038 3376 17030790 17030448 3.050000e-130 475.0
42 TraesCS5D01G421000 chr2A 87.500 168 4 2 508 675 12346814 12346664 9.630000e-41 178.0
43 TraesCS5D01G421000 chr2A 98.969 97 0 1 508 604 762462615 762462520 4.480000e-39 172.0
44 TraesCS5D01G421000 chr4D 81.674 442 69 6 1925 2358 506482776 506483213 1.150000e-94 357.0
45 TraesCS5D01G421000 chr4D 88.095 168 3 2 508 675 14895366 14895216 2.070000e-42 183.0
46 TraesCS5D01G421000 chr7B 96.460 113 4 0 1 113 613570471 613570359 1.600000e-43 187.0
47 TraesCS5D01G421000 chr1D 96.460 113 4 0 1 113 475840330 475840442 1.600000e-43 187.0
48 TraesCS5D01G421000 chr1D 87.719 171 3 3 508 677 475840459 475840612 2.070000e-42 183.0
49 TraesCS5D01G421000 chr1D 83.929 168 10 8 508 675 107503547 107503697 9.760000e-31 145.0
50 TraesCS5D01G421000 chr6D 95.575 113 5 0 1 113 69250586 69250474 7.440000e-42 182.0
51 TraesCS5D01G421000 chr1B 95.575 113 5 0 1 113 626668708 626668596 7.440000e-42 182.0
52 TraesCS5D01G421000 chr1B 98.947 95 0 1 510 604 46066177 46066084 5.790000e-38 169.0
53 TraesCS5D01G421000 chr1B 85.714 168 7 3 508 675 112527668 112527818 9.690000e-36 161.0
54 TraesCS5D01G421000 chr1B 85.106 141 4 2 535 675 682338686 682338563 9.830000e-26 128.0
55 TraesCS5D01G421000 chr6B 86.905 168 5 3 508 675 96541287 96541137 4.480000e-39 172.0
56 TraesCS5D01G421000 chr4A 98.969 97 0 1 508 604 734933063 734932968 4.480000e-39 172.0
57 TraesCS5D01G421000 chr3B 86.982 169 3 3 508 676 726377486 726377635 4.480000e-39 172.0
58 TraesCS5D01G421000 chr1A 98.969 97 0 1 508 604 59548757 59548852 4.480000e-39 172.0
59 TraesCS5D01G421000 chr6A 97.030 101 1 2 508 607 54200289 54200388 5.790000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G421000 chr5D 481301842 481305217 3375 False 2756.000000 5299 100.000000 1 3376 2 chr5D.!!$F4 3375
1 TraesCS5D01G421000 chr5D 481425508 481426920 1412 False 756.000000 1168 89.052500 1099 2372 2 chr5D.!!$F5 1273
2 TraesCS5D01G421000 chr5D 481183673 481185376 1703 False 678.000000 1243 82.714500 1100 2706 2 chr5D.!!$F3 1606
3 TraesCS5D01G421000 chr5B 589893849 589896212 2363 False 2950.000000 2950 89.723000 705 3005 1 chr5B.!!$F1 2300
4 TraesCS5D01G421000 chr5B 589998315 589999657 1342 False 1386.000000 1386 86.018000 1069 2372 1 chr5B.!!$F2 1303
5 TraesCS5D01G421000 chr5B 589676530 589678234 1704 False 509.333333 1013 85.376667 844 2382 3 chr5B.!!$F3 1538
6 TraesCS5D01G421000 chr5A 600438333 600439565 1232 False 1506.000000 1506 88.647000 1100 2372 1 chr5A.!!$F1 1272
7 TraesCS5D01G421000 chr5A 600361162 600363500 2338 False 631.750000 1945 87.118250 733 3024 4 chr5A.!!$F3 2291
8 TraesCS5D01G421000 chr5A 600236566 600238586 2020 False 452.875000 1332 85.353750 844 2687 4 chr5A.!!$F2 1843
9 TraesCS5D01G421000 chr4B 663940841 663942170 1329 True 575.000000 643 83.943500 1107 2353 2 chr4B.!!$R1 1246

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
668 669 0.037303 CACAGCCCACATCTTGTCCT 59.963 55.0 0.0 0.0 0.0 3.85 F
1375 1517 0.469070 AGCTCCATCTCTCCATGCAC 59.531 55.0 0.0 0.0 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1959 2419 0.038067 TTGGAGTTCGAATCGGCGAA 60.038 50.0 15.93 0.0 46.77 4.70 R
3236 3981 0.033228 CTGCAGATCCCAGATCGGTC 59.967 60.0 8.42 0.0 32.03 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.375908 TTCTCCATGTGCCGACTGC 60.376 57.895 0.00 0.00 41.77 4.40
34 35 2.689083 CTGCACAACAGTTCACCGA 58.311 52.632 0.00 0.00 41.86 4.69
35 36 1.229428 CTGCACAACAGTTCACCGAT 58.771 50.000 0.00 0.00 41.86 4.18
36 37 0.943673 TGCACAACAGTTCACCGATG 59.056 50.000 0.00 0.00 0.00 3.84
37 38 0.944386 GCACAACAGTTCACCGATGT 59.056 50.000 0.00 0.00 0.00 3.06
38 39 1.333619 GCACAACAGTTCACCGATGTT 59.666 47.619 0.00 0.00 37.64 2.71
39 40 2.546368 GCACAACAGTTCACCGATGTTA 59.454 45.455 0.00 0.00 35.47 2.41
40 41 3.188460 GCACAACAGTTCACCGATGTTAT 59.812 43.478 0.00 0.00 35.47 1.89
41 42 4.711721 CACAACAGTTCACCGATGTTATG 58.288 43.478 0.00 0.00 35.47 1.90
42 43 4.450757 CACAACAGTTCACCGATGTTATGA 59.549 41.667 0.00 0.00 34.13 2.15
43 44 4.451096 ACAACAGTTCACCGATGTTATGAC 59.549 41.667 0.00 0.00 35.47 3.06
44 45 3.250744 ACAGTTCACCGATGTTATGACG 58.749 45.455 0.00 0.00 0.00 4.35
45 46 3.057104 ACAGTTCACCGATGTTATGACGA 60.057 43.478 0.00 0.00 0.00 4.20
46 47 3.924073 CAGTTCACCGATGTTATGACGAA 59.076 43.478 0.00 0.00 0.00 3.85
47 48 4.031765 CAGTTCACCGATGTTATGACGAAG 59.968 45.833 0.00 0.00 0.00 3.79
48 49 3.159353 TCACCGATGTTATGACGAAGG 57.841 47.619 0.00 0.00 0.00 3.46
49 50 2.159156 TCACCGATGTTATGACGAAGGG 60.159 50.000 0.00 0.00 0.00 3.95
50 51 1.829222 ACCGATGTTATGACGAAGGGT 59.171 47.619 0.00 0.00 0.00 4.34
51 52 2.159142 ACCGATGTTATGACGAAGGGTC 60.159 50.000 0.00 0.00 46.27 4.46
52 53 2.100916 CCGATGTTATGACGAAGGGTCT 59.899 50.000 0.00 0.00 46.24 3.85
53 54 3.116300 CGATGTTATGACGAAGGGTCTG 58.884 50.000 0.00 0.00 46.24 3.51
54 55 2.380084 TGTTATGACGAAGGGTCTGC 57.620 50.000 0.00 0.00 46.24 4.26
55 56 1.066430 TGTTATGACGAAGGGTCTGCC 60.066 52.381 0.00 0.00 46.24 4.85
56 57 0.174845 TTATGACGAAGGGTCTGCCG 59.825 55.000 0.00 0.00 46.24 5.69
57 58 0.681887 TATGACGAAGGGTCTGCCGA 60.682 55.000 0.00 0.00 46.24 5.54
58 59 2.126031 GACGAAGGGTCTGCCGAC 60.126 66.667 0.00 0.00 42.62 4.79
59 60 2.600769 ACGAAGGGTCTGCCGACT 60.601 61.111 8.25 0.00 40.10 4.18
60 61 2.156051 GACGAAGGGTCTGCCGACTT 62.156 60.000 8.25 0.00 42.62 3.01
61 62 1.446272 CGAAGGGTCTGCCGACTTC 60.446 63.158 8.25 4.49 40.10 3.01
62 63 1.079057 GAAGGGTCTGCCGACTTCC 60.079 63.158 8.25 2.07 40.10 3.46
63 64 1.827399 GAAGGGTCTGCCGACTTCCA 61.827 60.000 8.25 0.00 40.10 3.53
64 65 2.047179 GGGTCTGCCGACTTCCAC 60.047 66.667 8.25 0.00 40.10 4.02
65 66 2.047179 GGTCTGCCGACTTCCACC 60.047 66.667 8.25 0.00 40.10 4.61
66 67 2.584391 GGTCTGCCGACTTCCACCT 61.584 63.158 8.25 0.00 40.10 4.00
67 68 1.371558 GTCTGCCGACTTCCACCTT 59.628 57.895 0.37 0.00 37.19 3.50
68 69 0.670854 GTCTGCCGACTTCCACCTTC 60.671 60.000 0.37 0.00 37.19 3.46
69 70 1.738099 CTGCCGACTTCCACCTTCG 60.738 63.158 0.00 0.00 0.00 3.79
70 71 2.154798 CTGCCGACTTCCACCTTCGA 62.155 60.000 0.00 0.00 34.62 3.71
71 72 1.446272 GCCGACTTCCACCTTCGAG 60.446 63.158 0.00 0.00 34.62 4.04
72 73 1.215647 CCGACTTCCACCTTCGAGG 59.784 63.158 0.00 0.03 42.49 4.63
73 74 1.248785 CCGACTTCCACCTTCGAGGA 61.249 60.000 7.76 0.00 37.67 3.71
74 75 0.171455 CGACTTCCACCTTCGAGGAG 59.829 60.000 7.76 0.61 37.67 3.69
75 76 1.258676 GACTTCCACCTTCGAGGAGT 58.741 55.000 7.76 0.00 37.67 3.85
76 77 1.619332 GACTTCCACCTTCGAGGAGTT 59.381 52.381 7.76 0.00 37.67 3.01
77 78 2.037381 GACTTCCACCTTCGAGGAGTTT 59.963 50.000 7.76 0.00 37.67 2.66
78 79 2.037381 ACTTCCACCTTCGAGGAGTTTC 59.963 50.000 7.76 0.00 37.67 2.78
79 80 0.601558 TCCACCTTCGAGGAGTTTCG 59.398 55.000 7.76 0.00 37.67 3.46
80 81 0.317479 CCACCTTCGAGGAGTTTCGT 59.683 55.000 7.76 0.00 37.67 3.85
81 82 1.270147 CCACCTTCGAGGAGTTTCGTT 60.270 52.381 7.76 0.00 37.67 3.85
82 83 2.059541 CACCTTCGAGGAGTTTCGTTC 58.940 52.381 7.76 0.00 37.67 3.95
83 84 1.000618 ACCTTCGAGGAGTTTCGTTCC 59.999 52.381 7.76 0.00 37.67 3.62
84 85 1.000506 CCTTCGAGGAGTTTCGTTCCA 59.999 52.381 0.00 0.00 37.67 3.53
85 86 2.329379 CTTCGAGGAGTTTCGTTCCAG 58.671 52.381 0.00 0.00 41.22 3.86
86 87 1.325355 TCGAGGAGTTTCGTTCCAGT 58.675 50.000 0.00 0.00 41.22 4.00
87 88 1.268899 TCGAGGAGTTTCGTTCCAGTC 59.731 52.381 0.00 0.00 41.22 3.51
88 89 1.269998 CGAGGAGTTTCGTTCCAGTCT 59.730 52.381 0.00 0.00 37.18 3.24
89 90 2.288273 CGAGGAGTTTCGTTCCAGTCTT 60.288 50.000 0.00 0.00 37.18 3.01
90 91 3.729966 GAGGAGTTTCGTTCCAGTCTTT 58.270 45.455 0.00 0.00 37.18 2.52
91 92 3.467803 AGGAGTTTCGTTCCAGTCTTTG 58.532 45.455 0.00 0.00 37.18 2.77
92 93 2.031944 GGAGTTTCGTTCCAGTCTTTGC 60.032 50.000 0.00 0.00 34.74 3.68
93 94 1.597663 AGTTTCGTTCCAGTCTTTGCG 59.402 47.619 0.00 0.00 0.00 4.85
94 95 1.329599 GTTTCGTTCCAGTCTTTGCGT 59.670 47.619 0.00 0.00 0.00 5.24
95 96 1.214367 TTCGTTCCAGTCTTTGCGTC 58.786 50.000 0.00 0.00 0.00 5.19
96 97 0.103390 TCGTTCCAGTCTTTGCGTCA 59.897 50.000 0.00 0.00 0.00 4.35
97 98 0.232303 CGTTCCAGTCTTTGCGTCAC 59.768 55.000 0.00 0.00 0.00 3.67
98 99 1.583054 GTTCCAGTCTTTGCGTCACT 58.417 50.000 0.00 0.00 0.00 3.41
99 100 1.261619 GTTCCAGTCTTTGCGTCACTG 59.738 52.381 0.00 0.00 37.81 3.66
101 102 1.571460 CAGTCTTTGCGTCACTGGC 59.429 57.895 0.00 0.00 34.96 4.85
102 103 1.956170 AGTCTTTGCGTCACTGGCG 60.956 57.895 0.00 0.00 0.00 5.69
534 535 7.661127 ATTGTGTACGTGTATATTTGTGTGT 57.339 32.000 0.00 0.00 0.00 3.72
535 536 8.760103 ATTGTGTACGTGTATATTTGTGTGTA 57.240 30.769 0.00 0.00 0.00 2.90
536 537 7.800015 TGTGTACGTGTATATTTGTGTGTAG 57.200 36.000 0.00 0.00 0.00 2.74
537 538 6.807720 TGTGTACGTGTATATTTGTGTGTAGG 59.192 38.462 0.00 0.00 0.00 3.18
538 539 6.254157 GTGTACGTGTATATTTGTGTGTAGGG 59.746 42.308 0.00 0.00 0.00 3.53
539 540 4.186159 ACGTGTATATTTGTGTGTAGGGC 58.814 43.478 0.00 0.00 0.00 5.19
540 541 3.558418 CGTGTATATTTGTGTGTAGGGCC 59.442 47.826 0.00 0.00 0.00 5.80
541 542 3.881089 GTGTATATTTGTGTGTAGGGCCC 59.119 47.826 16.46 16.46 0.00 5.80
542 543 3.523972 TGTATATTTGTGTGTAGGGCCCA 59.476 43.478 27.56 7.27 0.00 5.36
543 544 2.500392 TATTTGTGTGTAGGGCCCAC 57.500 50.000 27.56 20.24 0.00 4.61
544 545 0.251608 ATTTGTGTGTAGGGCCCACC 60.252 55.000 27.56 14.70 40.67 4.61
553 554 2.035783 GGGCCCACCTCCTGTTTC 59.964 66.667 19.95 0.00 35.85 2.78
554 555 2.035783 GGCCCACCTCCTGTTTCC 59.964 66.667 0.00 0.00 0.00 3.13
555 556 2.539081 GGCCCACCTCCTGTTTCCT 61.539 63.158 0.00 0.00 0.00 3.36
556 557 1.460699 GCCCACCTCCTGTTTCCTT 59.539 57.895 0.00 0.00 0.00 3.36
557 558 0.178961 GCCCACCTCCTGTTTCCTTT 60.179 55.000 0.00 0.00 0.00 3.11
558 559 1.620822 CCCACCTCCTGTTTCCTTTG 58.379 55.000 0.00 0.00 0.00 2.77
559 560 1.133482 CCCACCTCCTGTTTCCTTTGT 60.133 52.381 0.00 0.00 0.00 2.83
560 561 2.107552 CCCACCTCCTGTTTCCTTTGTA 59.892 50.000 0.00 0.00 0.00 2.41
561 562 3.245264 CCCACCTCCTGTTTCCTTTGTAT 60.245 47.826 0.00 0.00 0.00 2.29
562 563 4.018779 CCCACCTCCTGTTTCCTTTGTATA 60.019 45.833 0.00 0.00 0.00 1.47
563 564 5.186198 CCACCTCCTGTTTCCTTTGTATAG 58.814 45.833 0.00 0.00 0.00 1.31
564 565 5.280521 CCACCTCCTGTTTCCTTTGTATAGT 60.281 44.000 0.00 0.00 0.00 2.12
565 566 6.238648 CACCTCCTGTTTCCTTTGTATAGTT 58.761 40.000 0.00 0.00 0.00 2.24
566 567 6.715264 CACCTCCTGTTTCCTTTGTATAGTTT 59.285 38.462 0.00 0.00 0.00 2.66
567 568 6.715264 ACCTCCTGTTTCCTTTGTATAGTTTG 59.285 38.462 0.00 0.00 0.00 2.93
568 569 6.940298 CCTCCTGTTTCCTTTGTATAGTTTGA 59.060 38.462 0.00 0.00 0.00 2.69
569 570 7.119846 CCTCCTGTTTCCTTTGTATAGTTTGAG 59.880 40.741 0.00 0.00 0.00 3.02
570 571 6.940298 TCCTGTTTCCTTTGTATAGTTTGAGG 59.060 38.462 0.00 0.00 0.00 3.86
571 572 6.715264 CCTGTTTCCTTTGTATAGTTTGAGGT 59.285 38.462 0.00 0.00 0.00 3.85
572 573 7.230712 CCTGTTTCCTTTGTATAGTTTGAGGTT 59.769 37.037 0.00 0.00 0.00 3.50
573 574 7.936584 TGTTTCCTTTGTATAGTTTGAGGTTG 58.063 34.615 0.00 0.00 0.00 3.77
574 575 7.558444 TGTTTCCTTTGTATAGTTTGAGGTTGT 59.442 33.333 0.00 0.00 0.00 3.32
575 576 7.504924 TTCCTTTGTATAGTTTGAGGTTGTG 57.495 36.000 0.00 0.00 0.00 3.33
576 577 6.001460 TCCTTTGTATAGTTTGAGGTTGTGG 58.999 40.000 0.00 0.00 0.00 4.17
577 578 5.335661 CCTTTGTATAGTTTGAGGTTGTGGC 60.336 44.000 0.00 0.00 0.00 5.01
578 579 3.681593 TGTATAGTTTGAGGTTGTGGCC 58.318 45.455 0.00 0.00 0.00 5.36
579 580 2.215942 ATAGTTTGAGGTTGTGGCCC 57.784 50.000 0.00 0.00 0.00 5.80
580 581 0.847373 TAGTTTGAGGTTGTGGCCCA 59.153 50.000 0.00 0.00 0.00 5.36
581 582 0.755327 AGTTTGAGGTTGTGGCCCAC 60.755 55.000 7.01 7.01 34.56 4.61
582 583 1.456705 TTTGAGGTTGTGGCCCACC 60.457 57.895 12.25 3.64 32.73 4.61
583 584 1.943730 TTTGAGGTTGTGGCCCACCT 61.944 55.000 16.46 16.46 36.63 4.00
584 585 2.034221 GAGGTTGTGGCCCACCTC 59.966 66.667 23.36 23.36 41.44 3.85
585 586 2.450502 AGGTTGTGGCCCACCTCT 60.451 61.111 12.25 3.11 36.63 3.69
586 587 2.282462 GGTTGTGGCCCACCTCTG 60.282 66.667 12.25 0.00 36.63 3.35
587 588 2.515901 GTTGTGGCCCACCTCTGT 59.484 61.111 12.25 0.00 36.63 3.41
588 589 1.758592 GTTGTGGCCCACCTCTGTA 59.241 57.895 12.25 0.00 36.63 2.74
589 590 0.605589 GTTGTGGCCCACCTCTGTAC 60.606 60.000 12.25 0.00 36.63 2.90
590 591 0.766674 TTGTGGCCCACCTCTGTACT 60.767 55.000 12.25 0.00 36.63 2.73
591 592 0.766674 TGTGGCCCACCTCTGTACTT 60.767 55.000 12.25 0.00 36.63 2.24
592 593 1.272807 GTGGCCCACCTCTGTACTTA 58.727 55.000 1.17 0.00 36.63 2.24
593 594 1.838077 GTGGCCCACCTCTGTACTTAT 59.162 52.381 1.17 0.00 36.63 1.73
594 595 3.036091 GTGGCCCACCTCTGTACTTATA 58.964 50.000 1.17 0.00 36.63 0.98
595 596 3.646637 GTGGCCCACCTCTGTACTTATAT 59.353 47.826 1.17 0.00 36.63 0.86
596 597 4.836736 GTGGCCCACCTCTGTACTTATATA 59.163 45.833 1.17 0.00 36.63 0.86
597 598 5.484290 GTGGCCCACCTCTGTACTTATATAT 59.516 44.000 1.17 0.00 36.63 0.86
598 599 6.666546 GTGGCCCACCTCTGTACTTATATATA 59.333 42.308 1.17 0.00 36.63 0.86
599 600 6.666546 TGGCCCACCTCTGTACTTATATATAC 59.333 42.308 0.00 0.00 36.63 1.47
600 601 6.183360 GGCCCACCTCTGTACTTATATATACG 60.183 46.154 0.00 0.00 0.00 3.06
601 602 6.376581 GCCCACCTCTGTACTTATATATACGT 59.623 42.308 7.04 7.04 0.00 3.57
602 603 7.627939 GCCCACCTCTGTACTTATATATACGTG 60.628 44.444 11.18 0.06 0.00 4.49
603 604 7.249147 CCACCTCTGTACTTATATATACGTGC 58.751 42.308 11.18 10.35 0.00 5.34
604 605 7.094506 CCACCTCTGTACTTATATATACGTGCA 60.095 40.741 15.88 15.88 0.00 4.57
605 606 7.963465 CACCTCTGTACTTATATATACGTGCAG 59.037 40.741 27.32 27.32 42.41 4.41
606 607 7.120873 ACCTCTGTACTTATATATACGTGCAGG 59.879 40.741 29.90 23.37 41.83 4.85
607 608 6.849502 TCTGTACTTATATATACGTGCAGGC 58.150 40.000 29.90 11.77 41.83 4.85
608 609 5.957798 TGTACTTATATATACGTGCAGGCC 58.042 41.667 13.70 0.00 0.00 5.19
609 610 5.713389 TGTACTTATATATACGTGCAGGCCT 59.287 40.000 13.70 0.00 0.00 5.19
610 611 5.073311 ACTTATATATACGTGCAGGCCTG 57.927 43.478 29.34 29.34 0.00 4.85
611 612 4.527038 ACTTATATATACGTGCAGGCCTGT 59.473 41.667 32.81 16.46 0.00 4.00
612 613 5.713389 ACTTATATATACGTGCAGGCCTGTA 59.287 40.000 32.81 27.30 0.00 2.74
613 614 6.380274 ACTTATATATACGTGCAGGCCTGTAT 59.620 38.462 32.81 23.25 0.00 2.29
614 615 7.558807 ACTTATATATACGTGCAGGCCTGTATA 59.441 37.037 32.81 24.48 35.09 1.47
615 616 2.814280 ATACGTGCAGGCCTGTATAC 57.186 50.000 32.81 25.53 0.00 1.47
616 617 0.382873 TACGTGCAGGCCTGTATACG 59.617 55.000 35.66 35.66 38.97 3.06
617 618 1.141019 CGTGCAGGCCTGTATACGT 59.859 57.895 32.40 0.00 33.45 3.57
618 619 1.145759 CGTGCAGGCCTGTATACGTG 61.146 60.000 32.40 17.77 33.45 4.49
619 620 0.108329 GTGCAGGCCTGTATACGTGT 60.108 55.000 32.81 0.00 0.00 4.49
620 621 0.174845 TGCAGGCCTGTATACGTGTC 59.825 55.000 32.81 13.92 0.00 3.67
621 622 0.460311 GCAGGCCTGTATACGTGTCT 59.540 55.000 32.81 0.00 0.00 3.41
622 623 1.802880 GCAGGCCTGTATACGTGTCTG 60.803 57.143 32.81 17.25 0.00 3.51
623 624 1.112113 AGGCCTGTATACGTGTCTGG 58.888 55.000 3.11 3.30 0.00 3.86
624 625 0.822164 GGCCTGTATACGTGTCTGGT 59.178 55.000 0.00 0.00 0.00 4.00
625 626 1.470979 GGCCTGTATACGTGTCTGGTG 60.471 57.143 0.00 0.00 0.00 4.17
626 627 1.922570 CCTGTATACGTGTCTGGTGC 58.077 55.000 0.00 0.00 0.00 5.01
627 628 1.203758 CCTGTATACGTGTCTGGTGCA 59.796 52.381 0.00 0.00 0.00 4.57
628 629 2.259618 CTGTATACGTGTCTGGTGCAC 58.740 52.381 8.80 8.80 0.00 4.57
629 630 1.067425 TGTATACGTGTCTGGTGCACC 60.067 52.381 29.67 29.67 33.61 5.01
630 631 0.171679 TATACGTGTCTGGTGCACCG 59.828 55.000 30.07 23.48 39.43 4.94
631 632 1.529152 ATACGTGTCTGGTGCACCGA 61.529 55.000 30.07 25.24 39.43 4.69
632 633 1.529152 TACGTGTCTGGTGCACCGAT 61.529 55.000 30.07 16.46 39.43 4.18
633 634 2.094659 CGTGTCTGGTGCACCGATC 61.095 63.158 30.07 21.25 39.43 3.69
634 635 1.005037 GTGTCTGGTGCACCGATCA 60.005 57.895 30.07 23.40 39.43 2.92
635 636 0.602638 GTGTCTGGTGCACCGATCAA 60.603 55.000 30.07 12.05 39.43 2.57
636 637 0.324614 TGTCTGGTGCACCGATCAAT 59.675 50.000 30.07 0.00 39.43 2.57
637 638 1.552792 TGTCTGGTGCACCGATCAATA 59.447 47.619 30.07 10.51 39.43 1.90
638 639 2.170397 TGTCTGGTGCACCGATCAATAT 59.830 45.455 30.07 0.00 39.43 1.28
639 640 3.386402 TGTCTGGTGCACCGATCAATATA 59.614 43.478 30.07 8.97 39.43 0.86
640 641 4.040339 TGTCTGGTGCACCGATCAATATAT 59.960 41.667 30.07 0.00 39.43 0.86
641 642 4.997395 GTCTGGTGCACCGATCAATATATT 59.003 41.667 30.07 0.00 39.43 1.28
642 643 4.996758 TCTGGTGCACCGATCAATATATTG 59.003 41.667 30.07 17.82 39.43 1.90
643 644 3.501828 TGGTGCACCGATCAATATATTGC 59.498 43.478 30.07 8.23 39.43 3.56
644 645 3.424829 GGTGCACCGATCAATATATTGCG 60.425 47.826 22.49 16.60 37.68 4.85
645 646 3.431912 GTGCACCGATCAATATATTGCGA 59.568 43.478 18.89 5.09 37.68 5.10
646 647 4.093408 GTGCACCGATCAATATATTGCGAT 59.907 41.667 18.89 9.50 37.68 4.58
647 648 4.694982 TGCACCGATCAATATATTGCGATT 59.305 37.500 18.89 7.02 37.68 3.34
648 649 5.023920 GCACCGATCAATATATTGCGATTG 58.976 41.667 18.89 16.52 37.68 2.67
649 650 5.023920 CACCGATCAATATATTGCGATTGC 58.976 41.667 18.89 0.00 43.20 3.56
659 660 3.364441 GCGATTGCACAGCCCACA 61.364 61.111 0.00 0.00 42.15 4.17
660 661 2.703798 GCGATTGCACAGCCCACAT 61.704 57.895 0.00 0.00 42.15 3.21
661 662 1.430632 CGATTGCACAGCCCACATC 59.569 57.895 0.00 0.00 0.00 3.06
662 663 1.028330 CGATTGCACAGCCCACATCT 61.028 55.000 0.00 0.00 0.00 2.90
663 664 1.180029 GATTGCACAGCCCACATCTT 58.820 50.000 0.00 0.00 0.00 2.40
664 665 0.892755 ATTGCACAGCCCACATCTTG 59.107 50.000 0.00 0.00 0.00 3.02
665 666 0.467844 TTGCACAGCCCACATCTTGT 60.468 50.000 0.00 0.00 0.00 3.16
666 667 0.890542 TGCACAGCCCACATCTTGTC 60.891 55.000 0.00 0.00 0.00 3.18
667 668 1.589716 GCACAGCCCACATCTTGTCC 61.590 60.000 0.00 0.00 0.00 4.02
668 669 0.037303 CACAGCCCACATCTTGTCCT 59.963 55.000 0.00 0.00 0.00 3.85
669 670 0.773644 ACAGCCCACATCTTGTCCTT 59.226 50.000 0.00 0.00 0.00 3.36
670 671 1.271597 ACAGCCCACATCTTGTCCTTC 60.272 52.381 0.00 0.00 0.00 3.46
671 672 1.004044 CAGCCCACATCTTGTCCTTCT 59.996 52.381 0.00 0.00 0.00 2.85
672 673 2.237143 CAGCCCACATCTTGTCCTTCTA 59.763 50.000 0.00 0.00 0.00 2.10
673 674 2.237392 AGCCCACATCTTGTCCTTCTAC 59.763 50.000 0.00 0.00 0.00 2.59
674 675 2.027192 GCCCACATCTTGTCCTTCTACA 60.027 50.000 0.00 0.00 0.00 2.74
675 676 3.600388 CCCACATCTTGTCCTTCTACAC 58.400 50.000 0.00 0.00 0.00 2.90
676 677 3.007940 CCCACATCTTGTCCTTCTACACA 59.992 47.826 0.00 0.00 0.00 3.72
677 678 4.323792 CCCACATCTTGTCCTTCTACACAT 60.324 45.833 0.00 0.00 0.00 3.21
678 679 5.104941 CCCACATCTTGTCCTTCTACACATA 60.105 44.000 0.00 0.00 0.00 2.29
679 680 5.812642 CCACATCTTGTCCTTCTACACATAC 59.187 44.000 0.00 0.00 0.00 2.39
680 681 5.812642 CACATCTTGTCCTTCTACACATACC 59.187 44.000 0.00 0.00 0.00 2.73
681 682 5.721960 ACATCTTGTCCTTCTACACATACCT 59.278 40.000 0.00 0.00 0.00 3.08
682 683 6.895756 ACATCTTGTCCTTCTACACATACCTA 59.104 38.462 0.00 0.00 0.00 3.08
683 684 7.399191 ACATCTTGTCCTTCTACACATACCTAA 59.601 37.037 0.00 0.00 0.00 2.69
684 685 7.406031 TCTTGTCCTTCTACACATACCTAAG 57.594 40.000 0.00 0.00 0.00 2.18
685 686 7.179966 TCTTGTCCTTCTACACATACCTAAGA 58.820 38.462 0.00 0.00 0.00 2.10
686 687 7.839705 TCTTGTCCTTCTACACATACCTAAGAT 59.160 37.037 0.00 0.00 0.00 2.40
687 688 9.132923 CTTGTCCTTCTACACATACCTAAGATA 57.867 37.037 0.00 0.00 0.00 1.98
688 689 8.461249 TGTCCTTCTACACATACCTAAGATAC 57.539 38.462 0.00 0.00 0.00 2.24
689 690 7.228108 TGTCCTTCTACACATACCTAAGATACG 59.772 40.741 0.00 0.00 0.00 3.06
690 691 7.228308 GTCCTTCTACACATACCTAAGATACGT 59.772 40.741 0.00 0.00 0.00 3.57
691 692 8.432013 TCCTTCTACACATACCTAAGATACGTA 58.568 37.037 0.00 0.00 0.00 3.57
692 693 8.719648 CCTTCTACACATACCTAAGATACGTAG 58.280 40.741 0.08 0.00 0.00 3.51
693 694 8.613060 TTCTACACATACCTAAGATACGTAGG 57.387 38.462 0.08 0.00 43.37 3.18
701 702 5.961396 CCTAAGATACGTAGGTGTAGCAT 57.039 43.478 0.08 0.00 34.50 3.79
702 703 6.328641 CCTAAGATACGTAGGTGTAGCATT 57.671 41.667 0.08 0.00 34.50 3.56
703 704 7.444629 CCTAAGATACGTAGGTGTAGCATTA 57.555 40.000 0.08 0.00 34.50 1.90
963 1003 3.825908 ATAGTCCCCCAAAGCTTTCAA 57.174 42.857 9.23 0.00 0.00 2.69
969 1009 2.224042 CCCCCAAAGCTTTCAACTTCAC 60.224 50.000 9.23 0.00 0.00 3.18
994 1036 3.458487 ACTTAACTCCAAGACCACCAAGT 59.542 43.478 0.00 0.00 0.00 3.16
1004 1053 3.450904 AGACCACCAAGTGCTTCCTATA 58.549 45.455 0.00 0.00 31.34 1.31
1005 1054 4.040755 AGACCACCAAGTGCTTCCTATAT 58.959 43.478 0.00 0.00 31.34 0.86
1006 1055 5.216622 AGACCACCAAGTGCTTCCTATATA 58.783 41.667 0.00 0.00 31.34 0.86
1007 1056 5.846714 AGACCACCAAGTGCTTCCTATATAT 59.153 40.000 0.00 0.00 31.34 0.86
1008 1057 7.016914 AGACCACCAAGTGCTTCCTATATATA 58.983 38.462 0.00 0.00 31.34 0.86
1009 1058 7.005709 ACCACCAAGTGCTTCCTATATATAC 57.994 40.000 0.00 0.00 31.34 1.47
1010 1059 6.557253 ACCACCAAGTGCTTCCTATATATACA 59.443 38.462 0.00 0.00 31.34 2.29
1011 1060 7.099764 CCACCAAGTGCTTCCTATATATACAG 58.900 42.308 0.00 0.00 31.34 2.74
1053 1102 6.068010 ACACAAGGAACAAGATCCATACAAA 58.932 36.000 0.00 0.00 42.27 2.83
1076 1128 4.944930 AGTATATAACTAGGCAGAGGAGCG 59.055 45.833 0.00 0.00 36.36 5.03
1097 1156 3.951979 GCAGCAAGCAAGACGTATAAT 57.048 42.857 0.00 0.00 44.79 1.28
1277 1409 1.000521 TTCTACCTCCGCCGGAAGA 60.001 57.895 9.11 5.24 0.00 2.87
1362 1494 1.692762 GGATCTCCCCAGTAAGCTCCA 60.693 57.143 0.00 0.00 0.00 3.86
1375 1517 0.469070 AGCTCCATCTCTCCATGCAC 59.531 55.000 0.00 0.00 0.00 4.57
1379 1521 1.848388 TCCATCTCTCCATGCACCATT 59.152 47.619 0.00 0.00 0.00 3.16
1381 1523 2.422377 CCATCTCTCCATGCACCATTCA 60.422 50.000 0.00 0.00 0.00 2.57
1382 1524 3.487372 CATCTCTCCATGCACCATTCAT 58.513 45.455 0.00 0.00 0.00 2.57
1383 1525 3.204306 TCTCTCCATGCACCATTCATC 57.796 47.619 0.00 0.00 0.00 2.92
1771 2111 1.470098 GAAGCGGTAAGTAGTCCACGA 59.530 52.381 0.00 0.00 0.00 4.35
1799 2191 5.867903 TTCCATTTCCACACAAAATCACT 57.132 34.783 0.00 0.00 0.00 3.41
1813 2217 0.973632 ATCACTGTCCGTGGCACTTA 59.026 50.000 16.72 0.00 43.94 2.24
1826 2253 1.086696 GCACTTATGATGTGGTGCGT 58.913 50.000 0.00 0.00 43.91 5.24
1922 2370 1.153229 GGCCATCACCTACCGGAAC 60.153 63.158 9.46 0.00 0.00 3.62
2066 2538 2.520260 GCTCCATGCATCCCCCAC 60.520 66.667 0.00 0.00 42.31 4.61
2095 2573 1.067743 CAGCAGCAGTACGTCAGTCG 61.068 60.000 0.00 0.00 46.00 4.18
2222 2718 3.760684 AGAAACAGCAGAATCCATTGTCC 59.239 43.478 0.00 0.00 0.00 4.02
2233 2729 3.687102 ATTGTCCACGGCCGTCGA 61.687 61.111 31.80 26.73 42.43 4.20
2250 2746 1.967779 TCGACTTCCACCAGAATGACA 59.032 47.619 0.00 0.00 39.69 3.58
2261 2757 2.283298 CAGAATGACAATAGCCACGCT 58.717 47.619 0.00 0.00 40.21 5.07
2288 2784 3.547601 CGCGAACGATTTTTACAAGGTT 58.452 40.909 0.00 0.00 43.93 3.50
2302 2807 1.073098 AAGGTTGAGGGGTACTTGGG 58.927 55.000 0.00 0.00 0.00 4.12
2328 2833 1.519455 GCGAGGATGTTGGAGGTCG 60.519 63.158 0.00 0.00 0.00 4.79
2486 3038 0.605589 GGGTAACACTCGGCTGCTTT 60.606 55.000 0.00 0.00 39.74 3.51
2676 3301 3.363844 GAGTCCTGGCGGCTGAGTC 62.364 68.421 17.63 17.11 0.00 3.36
2727 3376 3.065095 GTCTTCATTGCTTGGCTCATCTC 59.935 47.826 0.00 0.00 0.00 2.75
2745 3394 6.097356 TCATCTCGTCCTTGTTAACATGTAC 58.903 40.000 9.56 8.04 0.00 2.90
2746 3395 4.478699 TCTCGTCCTTGTTAACATGTACG 58.521 43.478 24.41 24.41 0.00 3.67
2747 3396 4.022935 TCTCGTCCTTGTTAACATGTACGT 60.023 41.667 27.05 0.00 0.00 3.57
2852 3582 4.415512 AGCAAAGTATAATAAGGGGCTCCA 59.584 41.667 4.79 0.00 34.83 3.86
2968 3711 7.785033 ACTCAAATGATTCCCCAAATGATTAC 58.215 34.615 0.00 0.00 30.97 1.89
2979 3722 4.036734 CCCAAATGATTACATTCGGTCCAG 59.963 45.833 0.00 0.00 44.67 3.86
3009 3754 2.427506 CTGGAGCAAAAGTAGGGACAC 58.572 52.381 0.00 0.00 0.00 3.67
3032 3777 4.426313 CGGCCCCTGGGAGGAAAC 62.426 72.222 16.20 0.00 37.67 2.78
3033 3778 3.264845 GGCCCCTGGGAGGAAACA 61.265 66.667 16.20 0.00 37.67 2.83
3034 3779 2.851045 GCCCCTGGGAGGAAACAA 59.149 61.111 16.20 0.00 37.67 2.83
3035 3780 1.606601 GCCCCTGGGAGGAAACAAC 60.607 63.158 16.20 0.00 37.67 3.32
3036 3781 1.303317 CCCCTGGGAGGAAACAACG 60.303 63.158 16.20 0.00 37.67 4.10
3037 3782 1.971695 CCCTGGGAGGAAACAACGC 60.972 63.158 7.01 0.00 37.67 4.84
3038 3783 1.971695 CCTGGGAGGAAACAACGCC 60.972 63.158 0.00 0.00 37.67 5.68
3039 3784 1.971695 CTGGGAGGAAACAACGCCC 60.972 63.158 0.00 0.00 39.29 6.13
3040 3785 3.053896 GGGAGGAAACAACGCCCG 61.054 66.667 0.00 0.00 0.00 6.13
3041 3786 3.733960 GGAGGAAACAACGCCCGC 61.734 66.667 0.00 0.00 0.00 6.13
3042 3787 4.084888 GAGGAAACAACGCCCGCG 62.085 66.667 7.69 7.69 46.03 6.46
3075 3820 4.208686 GGTGACTCGGGCGGCTAG 62.209 72.222 9.56 9.64 0.00 3.42
3076 3821 3.138798 GTGACTCGGGCGGCTAGA 61.139 66.667 9.56 8.23 0.00 2.43
3077 3822 2.361992 TGACTCGGGCGGCTAGAA 60.362 61.111 9.56 0.00 0.00 2.10
3078 3823 1.980232 TGACTCGGGCGGCTAGAAA 60.980 57.895 9.56 0.00 0.00 2.52
3079 3824 1.518792 GACTCGGGCGGCTAGAAAC 60.519 63.158 9.56 2.66 0.00 2.78
3080 3825 2.202892 CTCGGGCGGCTAGAAACC 60.203 66.667 9.56 0.00 0.00 3.27
3081 3826 2.682494 TCGGGCGGCTAGAAACCT 60.682 61.111 9.56 0.00 0.00 3.50
3082 3827 1.380246 TCGGGCGGCTAGAAACCTA 60.380 57.895 9.56 0.00 0.00 3.08
3083 3828 1.067582 CGGGCGGCTAGAAACCTAG 59.932 63.158 9.56 0.00 37.33 3.02
3089 3834 4.732106 CTAGAAACCTAGCCGCCG 57.268 61.111 0.00 0.00 0.00 6.46
3090 3835 1.591863 CTAGAAACCTAGCCGCCGC 60.592 63.158 0.00 0.00 0.00 6.53
3091 3836 2.973180 CTAGAAACCTAGCCGCCGCC 62.973 65.000 0.00 0.00 34.57 6.13
3111 3856 4.394712 CGCCGCAAACTCCCTCCT 62.395 66.667 0.00 0.00 0.00 3.69
3112 3857 2.436824 GCCGCAAACTCCCTCCTC 60.437 66.667 0.00 0.00 0.00 3.71
3113 3858 2.269241 CCGCAAACTCCCTCCTCC 59.731 66.667 0.00 0.00 0.00 4.30
3114 3859 2.125512 CGCAAACTCCCTCCTCCG 60.126 66.667 0.00 0.00 0.00 4.63
3115 3860 2.436824 GCAAACTCCCTCCTCCGC 60.437 66.667 0.00 0.00 0.00 5.54
3116 3861 2.960688 GCAAACTCCCTCCTCCGCT 61.961 63.158 0.00 0.00 0.00 5.52
3117 3862 1.219393 CAAACTCCCTCCTCCGCTC 59.781 63.158 0.00 0.00 0.00 5.03
3118 3863 1.990614 AAACTCCCTCCTCCGCTCC 60.991 63.158 0.00 0.00 0.00 4.70
3119 3864 3.986116 AACTCCCTCCTCCGCTCCC 62.986 68.421 0.00 0.00 0.00 4.30
3120 3865 4.150454 CTCCCTCCTCCGCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
3121 3866 4.144727 TCCCTCCTCCGCTCCCTC 62.145 72.222 0.00 0.00 0.00 4.30
3187 3932 3.551407 GTGGCGGGGGATCTCCTC 61.551 72.222 12.53 3.62 35.95 3.71
3188 3933 3.767268 TGGCGGGGGATCTCCTCT 61.767 66.667 12.53 0.00 36.50 3.69
3189 3934 2.920384 GGCGGGGGATCTCCTCTC 60.920 72.222 12.53 0.51 36.50 3.20
3190 3935 2.200092 GCGGGGGATCTCCTCTCT 59.800 66.667 12.53 0.00 36.50 3.10
3191 3936 1.906333 GCGGGGGATCTCCTCTCTC 60.906 68.421 12.53 0.00 36.50 3.20
3192 3937 1.602323 CGGGGGATCTCCTCTCTCG 60.602 68.421 12.53 1.69 43.20 4.04
3193 3938 1.906333 GGGGGATCTCCTCTCTCGC 60.906 68.421 12.53 0.00 36.50 5.03
3194 3939 2.265182 GGGGATCTCCTCTCTCGCG 61.265 68.421 3.62 0.00 32.35 5.87
3195 3940 2.642700 GGATCTCCTCTCTCGCGC 59.357 66.667 0.00 0.00 0.00 6.86
3196 3941 2.251075 GATCTCCTCTCTCGCGCG 59.749 66.667 26.76 26.76 0.00 6.86
3197 3942 2.515057 ATCTCCTCTCTCGCGCGT 60.515 61.111 30.98 2.41 0.00 6.01
3198 3943 2.438385 GATCTCCTCTCTCGCGCGTC 62.438 65.000 30.98 11.97 0.00 5.19
3199 3944 2.933878 ATCTCCTCTCTCGCGCGTCT 62.934 60.000 30.98 0.33 0.00 4.18
3200 3945 3.163110 CTCCTCTCTCGCGCGTCTC 62.163 68.421 30.98 0.00 0.00 3.36
3201 3946 4.244802 CCTCTCTCGCGCGTCTCC 62.245 72.222 30.98 0.00 0.00 3.71
3202 3947 4.583254 CTCTCTCGCGCGTCTCCG 62.583 72.222 30.98 14.53 37.07 4.63
3226 3971 4.410400 GGAGGACCCCAAGGCGTG 62.410 72.222 0.00 0.00 36.11 5.34
3227 3972 3.637273 GAGGACCCCAAGGCGTGT 61.637 66.667 0.00 0.00 36.11 4.49
3228 3973 3.901797 GAGGACCCCAAGGCGTGTG 62.902 68.421 0.00 0.00 36.11 3.82
3230 3975 4.265056 GACCCCAAGGCGTGTGGT 62.265 66.667 7.36 7.36 41.30 4.16
3231 3976 4.579384 ACCCCAAGGCGTGTGGTG 62.579 66.667 6.80 0.00 36.50 4.17
3249 3994 4.286320 GCGCGACCGATCTGGGAT 62.286 66.667 12.10 0.00 44.64 3.85
3250 3995 2.049985 CGCGACCGATCTGGGATC 60.050 66.667 0.00 0.00 44.64 3.36
3251 3996 2.556459 CGCGACCGATCTGGGATCT 61.556 63.158 0.00 0.00 44.64 2.75
3252 3997 1.006805 GCGACCGATCTGGGATCTG 60.007 63.158 8.20 2.50 44.64 2.90
3253 3998 1.006805 CGACCGATCTGGGATCTGC 60.007 63.158 8.20 0.00 44.64 4.26
3254 3999 1.738346 CGACCGATCTGGGATCTGCA 61.738 60.000 8.20 0.00 44.64 4.41
3255 4000 0.033228 GACCGATCTGGGATCTGCAG 59.967 60.000 7.63 7.63 44.64 4.41
3256 4001 1.301558 CCGATCTGGGATCTGCAGC 60.302 63.158 9.47 0.00 0.00 5.25
3257 4002 1.664017 CGATCTGGGATCTGCAGCG 60.664 63.158 9.47 0.00 0.00 5.18
3258 4003 1.960250 GATCTGGGATCTGCAGCGC 60.960 63.158 9.47 0.00 0.00 5.92
3259 4004 3.804153 ATCTGGGATCTGCAGCGCG 62.804 63.158 9.47 0.00 0.00 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.375908 GCAGTCGGCACATGGAGAA 60.376 57.895 0.00 0.00 43.97 2.87
2 3 2.265739 GCAGTCGGCACATGGAGA 59.734 61.111 0.00 0.00 43.97 3.71
17 18 0.943673 CATCGGTGAACTGTTGTGCA 59.056 50.000 0.00 0.00 0.00 4.57
19 20 4.450757 TCATAACATCGGTGAACTGTTGTG 59.549 41.667 0.65 5.86 40.93 3.33
20 21 4.451096 GTCATAACATCGGTGAACTGTTGT 59.549 41.667 0.65 1.00 36.90 3.32
21 22 4.434198 CGTCATAACATCGGTGAACTGTTG 60.434 45.833 0.65 0.00 35.00 3.33
22 23 3.678072 CGTCATAACATCGGTGAACTGTT 59.322 43.478 0.65 0.00 37.00 3.16
23 24 3.057104 TCGTCATAACATCGGTGAACTGT 60.057 43.478 0.65 0.00 0.00 3.55
24 25 3.507786 TCGTCATAACATCGGTGAACTG 58.492 45.455 0.65 0.00 0.00 3.16
25 26 3.861276 TCGTCATAACATCGGTGAACT 57.139 42.857 0.65 0.00 0.00 3.01
26 27 3.306166 CCTTCGTCATAACATCGGTGAAC 59.694 47.826 0.65 0.00 0.00 3.18
27 28 3.517602 CCTTCGTCATAACATCGGTGAA 58.482 45.455 0.65 0.00 0.00 3.18
28 29 2.159156 CCCTTCGTCATAACATCGGTGA 60.159 50.000 0.65 0.00 0.00 4.02
29 30 2.201732 CCCTTCGTCATAACATCGGTG 58.798 52.381 0.00 0.00 0.00 4.94
30 31 1.829222 ACCCTTCGTCATAACATCGGT 59.171 47.619 0.00 0.00 0.00 4.69
31 32 2.100916 AGACCCTTCGTCATAACATCGG 59.899 50.000 0.00 0.00 44.66 4.18
32 33 3.116300 CAGACCCTTCGTCATAACATCG 58.884 50.000 0.00 0.00 44.66 3.84
33 34 2.866762 GCAGACCCTTCGTCATAACATC 59.133 50.000 0.00 0.00 44.66 3.06
34 35 2.420129 GGCAGACCCTTCGTCATAACAT 60.420 50.000 0.00 0.00 44.66 2.71
35 36 1.066430 GGCAGACCCTTCGTCATAACA 60.066 52.381 0.00 0.00 44.66 2.41
36 37 1.653151 GGCAGACCCTTCGTCATAAC 58.347 55.000 0.00 0.00 44.66 1.89
37 38 0.174845 CGGCAGACCCTTCGTCATAA 59.825 55.000 0.00 0.00 44.66 1.90
38 39 0.681887 TCGGCAGACCCTTCGTCATA 60.682 55.000 0.00 0.00 44.66 2.15
39 40 1.982395 TCGGCAGACCCTTCGTCAT 60.982 57.895 0.00 0.00 44.66 3.06
40 41 2.599281 TCGGCAGACCCTTCGTCA 60.599 61.111 0.00 0.00 44.66 4.35
41 42 2.126031 GTCGGCAGACCCTTCGTC 60.126 66.667 5.60 0.00 41.41 4.20
50 51 1.671742 GAAGGTGGAAGTCGGCAGA 59.328 57.895 0.00 0.00 0.00 4.26
51 52 1.738099 CGAAGGTGGAAGTCGGCAG 60.738 63.158 0.00 0.00 0.00 4.85
52 53 2.154798 CTCGAAGGTGGAAGTCGGCA 62.155 60.000 0.00 0.00 35.51 5.69
53 54 1.446272 CTCGAAGGTGGAAGTCGGC 60.446 63.158 0.00 0.00 35.51 5.54
54 55 1.215647 CCTCGAAGGTGGAAGTCGG 59.784 63.158 0.00 0.00 35.51 4.79
55 56 0.171455 CTCCTCGAAGGTGGAAGTCG 59.829 60.000 0.00 0.00 36.53 4.18
56 57 1.258676 ACTCCTCGAAGGTGGAAGTC 58.741 55.000 7.54 0.00 36.53 3.01
57 58 1.718280 AACTCCTCGAAGGTGGAAGT 58.282 50.000 7.54 0.16 36.53 3.01
58 59 2.689646 GAAACTCCTCGAAGGTGGAAG 58.310 52.381 7.54 0.00 36.53 3.46
59 60 1.000506 CGAAACTCCTCGAAGGTGGAA 59.999 52.381 7.54 0.00 41.44 3.53
60 61 0.601558 CGAAACTCCTCGAAGGTGGA 59.398 55.000 7.54 0.51 41.44 4.02
61 62 0.317479 ACGAAACTCCTCGAAGGTGG 59.683 55.000 0.00 0.00 41.44 4.61
62 63 2.059541 GAACGAAACTCCTCGAAGGTG 58.940 52.381 0.00 0.00 41.44 4.00
63 64 1.000618 GGAACGAAACTCCTCGAAGGT 59.999 52.381 0.00 0.00 41.44 3.50
64 65 1.000506 TGGAACGAAACTCCTCGAAGG 59.999 52.381 0.00 0.00 41.44 3.46
65 66 2.288273 ACTGGAACGAAACTCCTCGAAG 60.288 50.000 0.00 0.00 41.44 3.79
66 67 1.684983 ACTGGAACGAAACTCCTCGAA 59.315 47.619 0.00 0.00 41.44 3.71
67 68 1.268899 GACTGGAACGAAACTCCTCGA 59.731 52.381 0.00 0.00 41.44 4.04
68 69 1.269998 AGACTGGAACGAAACTCCTCG 59.730 52.381 0.00 0.00 44.50 4.63
69 70 3.388345 AAGACTGGAACGAAACTCCTC 57.612 47.619 0.00 0.00 33.77 3.71
70 71 3.467803 CAAAGACTGGAACGAAACTCCT 58.532 45.455 0.00 0.00 33.77 3.69
71 72 2.031944 GCAAAGACTGGAACGAAACTCC 60.032 50.000 0.00 0.00 0.00 3.85
72 73 2.348591 CGCAAAGACTGGAACGAAACTC 60.349 50.000 0.00 0.00 0.00 3.01
73 74 1.597663 CGCAAAGACTGGAACGAAACT 59.402 47.619 0.00 0.00 0.00 2.66
74 75 1.329599 ACGCAAAGACTGGAACGAAAC 59.670 47.619 0.00 0.00 0.00 2.78
75 76 1.595794 GACGCAAAGACTGGAACGAAA 59.404 47.619 0.00 0.00 0.00 3.46
76 77 1.214367 GACGCAAAGACTGGAACGAA 58.786 50.000 0.00 0.00 0.00 3.85
77 78 0.103390 TGACGCAAAGACTGGAACGA 59.897 50.000 0.00 0.00 0.00 3.85
78 79 0.232303 GTGACGCAAAGACTGGAACG 59.768 55.000 0.00 0.00 0.00 3.95
79 80 1.261619 CAGTGACGCAAAGACTGGAAC 59.738 52.381 0.00 0.00 34.63 3.62
80 81 1.581934 CAGTGACGCAAAGACTGGAA 58.418 50.000 0.00 0.00 34.63 3.53
81 82 3.289128 CAGTGACGCAAAGACTGGA 57.711 52.632 0.00 0.00 34.63 3.86
83 84 1.571460 GCCAGTGACGCAAAGACTG 59.429 57.895 0.00 0.00 37.45 3.51
84 85 1.956170 CGCCAGTGACGCAAAGACT 60.956 57.895 0.00 0.00 0.00 3.24
85 86 2.551270 CGCCAGTGACGCAAAGAC 59.449 61.111 0.00 0.00 0.00 3.01
508 509 9.373603 ACACACAAATATACACGTACACAATAT 57.626 29.630 0.00 0.00 0.00 1.28
509 510 8.760103 ACACACAAATATACACGTACACAATA 57.240 30.769 0.00 0.00 0.00 1.90
510 511 7.661127 ACACACAAATATACACGTACACAAT 57.339 32.000 0.00 0.00 0.00 2.71
511 512 7.328982 CCTACACACAAATATACACGTACACAA 59.671 37.037 0.00 0.00 0.00 3.33
512 513 6.807720 CCTACACACAAATATACACGTACACA 59.192 38.462 0.00 0.00 0.00 3.72
513 514 6.254157 CCCTACACACAAATATACACGTACAC 59.746 42.308 0.00 0.00 0.00 2.90
514 515 6.331845 CCCTACACACAAATATACACGTACA 58.668 40.000 0.00 0.00 0.00 2.90
515 516 5.232838 GCCCTACACACAAATATACACGTAC 59.767 44.000 0.00 0.00 0.00 3.67
516 517 5.350633 GCCCTACACACAAATATACACGTA 58.649 41.667 0.00 0.00 0.00 3.57
517 518 4.186159 GCCCTACACACAAATATACACGT 58.814 43.478 0.00 0.00 0.00 4.49
518 519 3.558418 GGCCCTACACACAAATATACACG 59.442 47.826 0.00 0.00 0.00 4.49
519 520 3.881089 GGGCCCTACACACAAATATACAC 59.119 47.826 17.04 0.00 0.00 2.90
520 521 3.523972 TGGGCCCTACACACAAATATACA 59.476 43.478 25.70 0.00 0.00 2.29
521 522 3.881089 GTGGGCCCTACACACAAATATAC 59.119 47.826 25.70 2.94 38.67 1.47
522 523 3.117813 GGTGGGCCCTACACACAAATATA 60.118 47.826 25.70 0.00 40.54 0.86
523 524 2.357777 GGTGGGCCCTACACACAAATAT 60.358 50.000 25.70 0.00 40.54 1.28
524 525 1.004979 GGTGGGCCCTACACACAAATA 59.995 52.381 25.70 0.00 40.54 1.40
525 526 0.251608 GGTGGGCCCTACACACAAAT 60.252 55.000 25.70 0.00 40.54 2.32
526 527 1.151908 GGTGGGCCCTACACACAAA 59.848 57.895 25.70 0.00 40.54 2.83
527 528 1.772567 AGGTGGGCCCTACACACAA 60.773 57.895 25.70 0.00 43.87 3.33
528 529 2.122144 AGGTGGGCCCTACACACA 60.122 61.111 25.70 0.00 43.87 3.72
529 530 2.669240 GAGGTGGGCCCTACACAC 59.331 66.667 25.70 12.48 46.51 3.82
530 531 2.609610 GGAGGTGGGCCCTACACA 60.610 66.667 25.70 0.00 46.51 3.72
533 534 1.498176 AAACAGGAGGTGGGCCCTAC 61.498 60.000 25.70 18.94 46.51 3.18
534 535 1.151677 AAACAGGAGGTGGGCCCTA 60.152 57.895 25.70 6.58 46.51 3.53
536 537 2.035783 GAAACAGGAGGTGGGCCC 59.964 66.667 17.59 17.59 34.57 5.80
537 538 2.035783 GGAAACAGGAGGTGGGCC 59.964 66.667 0.00 0.00 0.00 5.80
538 539 0.178961 AAAGGAAACAGGAGGTGGGC 60.179 55.000 0.00 0.00 0.00 5.36
539 540 1.133482 ACAAAGGAAACAGGAGGTGGG 60.133 52.381 0.00 0.00 0.00 4.61
540 541 2.364972 ACAAAGGAAACAGGAGGTGG 57.635 50.000 0.00 0.00 0.00 4.61
541 542 5.805728 ACTATACAAAGGAAACAGGAGGTG 58.194 41.667 0.00 0.00 0.00 4.00
542 543 6.449830 AACTATACAAAGGAAACAGGAGGT 57.550 37.500 0.00 0.00 0.00 3.85
543 544 6.940298 TCAAACTATACAAAGGAAACAGGAGG 59.060 38.462 0.00 0.00 0.00 4.30
544 545 7.119846 CCTCAAACTATACAAAGGAAACAGGAG 59.880 40.741 0.00 0.00 0.00 3.69
545 546 6.940298 CCTCAAACTATACAAAGGAAACAGGA 59.060 38.462 0.00 0.00 0.00 3.86
546 547 6.715264 ACCTCAAACTATACAAAGGAAACAGG 59.285 38.462 0.00 0.00 0.00 4.00
547 548 7.745620 ACCTCAAACTATACAAAGGAAACAG 57.254 36.000 0.00 0.00 0.00 3.16
548 549 7.558444 ACAACCTCAAACTATACAAAGGAAACA 59.442 33.333 0.00 0.00 0.00 2.83
549 550 7.860872 CACAACCTCAAACTATACAAAGGAAAC 59.139 37.037 0.00 0.00 0.00 2.78
550 551 7.013846 CCACAACCTCAAACTATACAAAGGAAA 59.986 37.037 0.00 0.00 0.00 3.13
551 552 6.488683 CCACAACCTCAAACTATACAAAGGAA 59.511 38.462 0.00 0.00 0.00 3.36
552 553 6.001460 CCACAACCTCAAACTATACAAAGGA 58.999 40.000 0.00 0.00 0.00 3.36
553 554 5.335661 GCCACAACCTCAAACTATACAAAGG 60.336 44.000 0.00 0.00 0.00 3.11
554 555 5.335661 GGCCACAACCTCAAACTATACAAAG 60.336 44.000 0.00 0.00 0.00 2.77
555 556 4.521256 GGCCACAACCTCAAACTATACAAA 59.479 41.667 0.00 0.00 0.00 2.83
556 557 4.076394 GGCCACAACCTCAAACTATACAA 58.924 43.478 0.00 0.00 0.00 2.41
557 558 3.560453 GGGCCACAACCTCAAACTATACA 60.560 47.826 4.39 0.00 0.00 2.29
558 559 3.014623 GGGCCACAACCTCAAACTATAC 58.985 50.000 4.39 0.00 0.00 1.47
559 560 2.645297 TGGGCCACAACCTCAAACTATA 59.355 45.455 0.00 0.00 0.00 1.31
560 561 1.427368 TGGGCCACAACCTCAAACTAT 59.573 47.619 0.00 0.00 0.00 2.12
561 562 0.847373 TGGGCCACAACCTCAAACTA 59.153 50.000 0.00 0.00 0.00 2.24
562 563 0.755327 GTGGGCCACAACCTCAAACT 60.755 55.000 31.26 0.00 34.08 2.66
563 564 1.739667 GTGGGCCACAACCTCAAAC 59.260 57.895 31.26 0.00 34.08 2.93
564 565 1.456705 GGTGGGCCACAACCTCAAA 60.457 57.895 35.69 0.00 35.86 2.69
565 566 2.197324 GGTGGGCCACAACCTCAA 59.803 61.111 35.69 0.00 35.86 3.02
566 567 2.776526 AGGTGGGCCACAACCTCA 60.777 61.111 35.69 0.00 37.57 3.86
567 568 2.034221 GAGGTGGGCCACAACCTC 59.966 66.667 35.69 28.30 37.57 3.85
568 569 2.450502 AGAGGTGGGCCACAACCT 60.451 61.111 35.69 25.10 37.57 3.50
569 570 1.774894 TACAGAGGTGGGCCACAACC 61.775 60.000 35.69 23.20 37.57 3.77
570 571 0.605589 GTACAGAGGTGGGCCACAAC 60.606 60.000 35.69 26.97 35.86 3.32
571 572 0.766674 AGTACAGAGGTGGGCCACAA 60.767 55.000 35.69 12.29 35.86 3.33
572 573 0.766674 AAGTACAGAGGTGGGCCACA 60.767 55.000 35.69 13.58 35.86 4.17
573 574 1.272807 TAAGTACAGAGGTGGGCCAC 58.727 55.000 28.69 28.69 37.19 5.01
574 575 2.263895 ATAAGTACAGAGGTGGGCCA 57.736 50.000 0.00 0.00 37.19 5.36
575 576 6.183360 CGTATATATAAGTACAGAGGTGGGCC 60.183 46.154 0.00 0.00 0.00 5.80
576 577 6.376581 ACGTATATATAAGTACAGAGGTGGGC 59.623 42.308 9.27 0.00 0.00 5.36
577 578 7.627939 GCACGTATATATAAGTACAGAGGTGGG 60.628 44.444 10.46 0.00 0.00 4.61
578 579 7.094506 TGCACGTATATATAAGTACAGAGGTGG 60.095 40.741 10.46 0.00 0.00 4.61
579 580 7.813645 TGCACGTATATATAAGTACAGAGGTG 58.186 38.462 10.46 4.25 0.00 4.00
580 581 7.120873 CCTGCACGTATATATAAGTACAGAGGT 59.879 40.741 27.33 4.62 37.94 3.85
581 582 7.473366 CCTGCACGTATATATAAGTACAGAGG 58.527 42.308 27.33 16.21 37.94 3.69
582 583 6.967767 GCCTGCACGTATATATAAGTACAGAG 59.032 42.308 27.33 20.87 37.94 3.35
583 584 6.127814 GGCCTGCACGTATATATAAGTACAGA 60.128 42.308 27.33 8.40 37.94 3.41
584 585 6.034591 GGCCTGCACGTATATATAAGTACAG 58.965 44.000 22.44 22.44 36.51 2.74
585 586 5.713389 AGGCCTGCACGTATATATAAGTACA 59.287 40.000 3.11 10.33 0.00 2.90
586 587 6.034591 CAGGCCTGCACGTATATATAAGTAC 58.965 44.000 22.33 6.56 0.00 2.73
587 588 5.713389 ACAGGCCTGCACGTATATATAAGTA 59.287 40.000 33.06 0.00 0.00 2.24
588 589 4.527038 ACAGGCCTGCACGTATATATAAGT 59.473 41.667 33.06 3.89 0.00 2.24
589 590 5.073311 ACAGGCCTGCACGTATATATAAG 57.927 43.478 33.06 3.09 0.00 1.73
590 591 6.785337 ATACAGGCCTGCACGTATATATAA 57.215 37.500 33.06 0.00 0.00 0.98
591 592 6.017687 CGTATACAGGCCTGCACGTATATATA 60.018 42.308 31.64 21.66 31.45 0.86
592 593 5.220989 CGTATACAGGCCTGCACGTATATAT 60.221 44.000 31.64 22.46 31.45 0.86
593 594 4.095334 CGTATACAGGCCTGCACGTATATA 59.905 45.833 31.64 22.74 31.45 0.86
594 595 3.119602 CGTATACAGGCCTGCACGTATAT 60.120 47.826 31.64 23.54 31.45 0.86
595 596 2.227149 CGTATACAGGCCTGCACGTATA 59.773 50.000 31.64 23.56 32.53 1.47
596 597 1.000607 CGTATACAGGCCTGCACGTAT 60.001 52.381 31.64 24.37 32.53 3.06
597 598 0.382873 CGTATACAGGCCTGCACGTA 59.617 55.000 31.64 20.43 32.53 3.57
598 599 1.141019 CGTATACAGGCCTGCACGT 59.859 57.895 31.64 19.16 32.53 4.49
599 600 1.141019 ACGTATACAGGCCTGCACG 59.859 57.895 35.15 35.15 38.59 5.34
600 601 0.108329 ACACGTATACAGGCCTGCAC 60.108 55.000 33.06 24.52 0.00 4.57
601 602 0.174845 GACACGTATACAGGCCTGCA 59.825 55.000 33.06 21.93 0.00 4.41
602 603 0.460311 AGACACGTATACAGGCCTGC 59.540 55.000 33.06 15.27 0.00 4.85
603 604 1.202417 CCAGACACGTATACAGGCCTG 60.202 57.143 31.60 31.60 0.00 4.85
604 605 1.112113 CCAGACACGTATACAGGCCT 58.888 55.000 0.00 0.00 0.00 5.19
605 606 0.822164 ACCAGACACGTATACAGGCC 59.178 55.000 3.32 0.00 0.00 5.19
606 607 1.922570 CACCAGACACGTATACAGGC 58.077 55.000 3.32 0.00 0.00 4.85
607 608 1.203758 TGCACCAGACACGTATACAGG 59.796 52.381 3.32 0.00 0.00 4.00
608 609 2.259618 GTGCACCAGACACGTATACAG 58.740 52.381 5.22 0.00 0.00 2.74
609 610 1.067425 GGTGCACCAGACACGTATACA 60.067 52.381 31.23 0.00 38.98 2.29
610 611 1.636988 GGTGCACCAGACACGTATAC 58.363 55.000 31.23 0.00 38.98 1.47
611 612 0.171679 CGGTGCACCAGACACGTATA 59.828 55.000 34.16 0.00 38.98 1.47
612 613 1.080093 CGGTGCACCAGACACGTAT 60.080 57.895 34.16 0.00 38.98 3.06
613 614 1.529152 ATCGGTGCACCAGACACGTA 61.529 55.000 34.16 11.09 38.98 3.57
614 615 2.765250 GATCGGTGCACCAGACACGT 62.765 60.000 34.16 16.86 38.98 4.49
615 616 2.048222 ATCGGTGCACCAGACACG 60.048 61.111 34.16 19.37 38.98 4.49
616 617 0.602638 TTGATCGGTGCACCAGACAC 60.603 55.000 34.16 24.83 37.31 3.67
617 618 0.324614 ATTGATCGGTGCACCAGACA 59.675 50.000 34.16 25.09 35.14 3.41
618 619 2.309528 TATTGATCGGTGCACCAGAC 57.690 50.000 34.16 22.97 35.14 3.51
619 620 4.890158 ATATATTGATCGGTGCACCAGA 57.110 40.909 34.16 29.26 35.14 3.86
620 621 4.378770 GCAATATATTGATCGGTGCACCAG 60.379 45.833 34.16 25.45 40.14 4.00
621 622 3.501828 GCAATATATTGATCGGTGCACCA 59.498 43.478 34.16 21.66 40.14 4.17
622 623 3.424829 CGCAATATATTGATCGGTGCACC 60.425 47.826 26.78 26.78 40.14 5.01
623 624 3.431912 TCGCAATATATTGATCGGTGCAC 59.568 43.478 26.22 8.80 40.14 4.57
624 625 3.658709 TCGCAATATATTGATCGGTGCA 58.341 40.909 26.22 5.37 40.14 4.57
625 626 4.864916 ATCGCAATATATTGATCGGTGC 57.135 40.909 26.22 10.79 40.14 5.01
626 627 5.023920 GCAATCGCAATATATTGATCGGTG 58.976 41.667 26.22 20.16 40.14 4.94
627 628 5.221891 GCAATCGCAATATATTGATCGGT 57.778 39.130 26.22 15.53 40.14 4.69
642 643 2.603135 GATGTGGGCTGTGCAATCGC 62.603 60.000 0.00 0.00 39.24 4.58
643 644 1.028330 AGATGTGGGCTGTGCAATCG 61.028 55.000 0.00 0.00 0.00 3.34
644 645 1.135199 CAAGATGTGGGCTGTGCAATC 60.135 52.381 0.00 0.00 0.00 2.67
645 646 0.892755 CAAGATGTGGGCTGTGCAAT 59.107 50.000 0.00 0.00 0.00 3.56
646 647 0.467844 ACAAGATGTGGGCTGTGCAA 60.468 50.000 0.00 0.00 0.00 4.08
647 648 0.890542 GACAAGATGTGGGCTGTGCA 60.891 55.000 0.00 0.00 0.00 4.57
648 649 1.589716 GGACAAGATGTGGGCTGTGC 61.590 60.000 0.00 0.00 0.00 4.57
649 650 0.037303 AGGACAAGATGTGGGCTGTG 59.963 55.000 0.00 0.00 0.00 3.66
650 651 0.773644 AAGGACAAGATGTGGGCTGT 59.226 50.000 0.00 0.00 0.00 4.40
651 652 1.004044 AGAAGGACAAGATGTGGGCTG 59.996 52.381 0.00 0.00 0.00 4.85
652 653 1.366319 AGAAGGACAAGATGTGGGCT 58.634 50.000 0.00 0.00 0.00 5.19
653 654 2.027192 TGTAGAAGGACAAGATGTGGGC 60.027 50.000 0.00 0.00 0.00 5.36
654 655 3.007940 TGTGTAGAAGGACAAGATGTGGG 59.992 47.826 0.00 0.00 0.00 4.61
655 656 4.271696 TGTGTAGAAGGACAAGATGTGG 57.728 45.455 0.00 0.00 0.00 4.17
656 657 5.812642 GGTATGTGTAGAAGGACAAGATGTG 59.187 44.000 0.00 0.00 0.00 3.21
657 658 5.721960 AGGTATGTGTAGAAGGACAAGATGT 59.278 40.000 0.00 0.00 0.00 3.06
658 659 6.227298 AGGTATGTGTAGAAGGACAAGATG 57.773 41.667 0.00 0.00 0.00 2.90
659 660 7.839705 TCTTAGGTATGTGTAGAAGGACAAGAT 59.160 37.037 0.00 0.00 0.00 2.40
660 661 7.179966 TCTTAGGTATGTGTAGAAGGACAAGA 58.820 38.462 0.00 0.00 0.00 3.02
661 662 7.406031 TCTTAGGTATGTGTAGAAGGACAAG 57.594 40.000 0.00 0.00 0.00 3.16
662 663 7.973048 ATCTTAGGTATGTGTAGAAGGACAA 57.027 36.000 0.00 0.00 0.00 3.18
663 664 7.228108 CGTATCTTAGGTATGTGTAGAAGGACA 59.772 40.741 0.00 0.00 0.00 4.02
664 665 7.228308 ACGTATCTTAGGTATGTGTAGAAGGAC 59.772 40.741 0.00 0.00 0.00 3.85
665 666 7.285566 ACGTATCTTAGGTATGTGTAGAAGGA 58.714 38.462 0.00 0.00 0.00 3.36
666 667 7.507733 ACGTATCTTAGGTATGTGTAGAAGG 57.492 40.000 0.00 0.00 0.00 3.46
667 668 8.719648 CCTACGTATCTTAGGTATGTGTAGAAG 58.280 40.741 7.57 0.00 32.67 2.85
668 669 8.213679 ACCTACGTATCTTAGGTATGTGTAGAA 58.786 37.037 5.13 0.00 46.34 2.10
669 670 7.658982 CACCTACGTATCTTAGGTATGTGTAGA 59.341 40.741 6.64 0.00 46.45 2.59
670 671 7.443575 ACACCTACGTATCTTAGGTATGTGTAG 59.556 40.741 18.32 5.43 46.45 2.74
671 672 7.282585 ACACCTACGTATCTTAGGTATGTGTA 58.717 38.462 18.32 0.00 46.45 2.90
672 673 6.125029 ACACCTACGTATCTTAGGTATGTGT 58.875 40.000 16.00 16.00 46.45 3.72
673 674 6.630444 ACACCTACGTATCTTAGGTATGTG 57.370 41.667 6.64 15.16 46.45 3.21
674 675 6.429385 GCTACACCTACGTATCTTAGGTATGT 59.571 42.308 6.64 2.73 46.45 2.29
675 676 6.429078 TGCTACACCTACGTATCTTAGGTATG 59.571 42.308 6.64 0.00 46.45 2.39
676 677 6.537355 TGCTACACCTACGTATCTTAGGTAT 58.463 40.000 6.64 0.00 46.45 2.73
677 678 5.928976 TGCTACACCTACGTATCTTAGGTA 58.071 41.667 6.64 0.00 46.45 3.08
679 680 5.961396 ATGCTACACCTACGTATCTTAGG 57.039 43.478 0.00 0.00 41.86 2.69
680 681 8.097078 AGTAATGCTACACCTACGTATCTTAG 57.903 38.462 0.00 0.00 0.00 2.18
681 682 7.935755 AGAGTAATGCTACACCTACGTATCTTA 59.064 37.037 0.00 0.00 0.00 2.10
682 683 6.771749 AGAGTAATGCTACACCTACGTATCTT 59.228 38.462 0.00 0.00 0.00 2.40
683 684 6.297582 AGAGTAATGCTACACCTACGTATCT 58.702 40.000 0.00 0.00 0.00 1.98
684 685 6.557291 AGAGTAATGCTACACCTACGTATC 57.443 41.667 0.00 0.00 0.00 2.24
685 686 6.016443 GGAAGAGTAATGCTACACCTACGTAT 60.016 42.308 0.00 0.00 0.00 3.06
686 687 5.297776 GGAAGAGTAATGCTACACCTACGTA 59.702 44.000 0.00 0.00 0.00 3.57
687 688 4.097589 GGAAGAGTAATGCTACACCTACGT 59.902 45.833 0.00 0.00 0.00 3.57
688 689 4.097437 TGGAAGAGTAATGCTACACCTACG 59.903 45.833 0.00 0.00 0.00 3.51
689 690 5.593679 TGGAAGAGTAATGCTACACCTAC 57.406 43.478 0.00 0.00 0.00 3.18
690 691 5.897250 TGATGGAAGAGTAATGCTACACCTA 59.103 40.000 0.00 0.00 0.00 3.08
691 692 4.716784 TGATGGAAGAGTAATGCTACACCT 59.283 41.667 0.00 0.00 0.00 4.00
692 693 4.811557 GTGATGGAAGAGTAATGCTACACC 59.188 45.833 0.00 0.00 0.00 4.16
693 694 5.665459 AGTGATGGAAGAGTAATGCTACAC 58.335 41.667 0.00 0.00 0.00 2.90
694 695 5.939764 AGTGATGGAAGAGTAATGCTACA 57.060 39.130 0.00 0.00 0.00 2.74
695 696 6.367422 GCATAGTGATGGAAGAGTAATGCTAC 59.633 42.308 0.00 0.00 33.26 3.58
696 697 6.268617 AGCATAGTGATGGAAGAGTAATGCTA 59.731 38.462 4.30 0.00 38.50 3.49
697 698 5.071519 AGCATAGTGATGGAAGAGTAATGCT 59.928 40.000 0.00 0.00 35.90 3.79
698 699 5.178996 CAGCATAGTGATGGAAGAGTAATGC 59.821 44.000 0.00 0.00 33.26 3.56
699 700 5.178996 GCAGCATAGTGATGGAAGAGTAATG 59.821 44.000 0.00 0.00 33.75 1.90
700 701 5.163269 TGCAGCATAGTGATGGAAGAGTAAT 60.163 40.000 0.00 0.00 29.38 1.89
701 702 4.162131 TGCAGCATAGTGATGGAAGAGTAA 59.838 41.667 0.00 0.00 29.38 2.24
702 703 3.706086 TGCAGCATAGTGATGGAAGAGTA 59.294 43.478 0.00 0.00 29.38 2.59
703 704 2.502947 TGCAGCATAGTGATGGAAGAGT 59.497 45.455 0.00 0.00 29.38 3.24
801 815 5.423015 TCTTGCTTACTGGCTATGAGAAAG 58.577 41.667 0.00 0.00 0.00 2.62
946 986 1.704641 AGTTGAAAGCTTTGGGGGAC 58.295 50.000 18.30 7.55 0.00 4.46
963 1003 5.011840 GGTCTTGGAGTTAAGTAGGTGAAGT 59.988 44.000 0.00 0.00 0.00 3.01
969 1009 3.581332 TGGTGGTCTTGGAGTTAAGTAGG 59.419 47.826 0.00 0.00 0.00 3.18
994 1036 7.040271 TGCGTTGTACTGTATATATAGGAAGCA 60.040 37.037 10.82 9.05 0.00 3.91
1004 1053 5.227908 GTGCCTATGCGTTGTACTGTATAT 58.772 41.667 0.00 0.00 41.78 0.86
1005 1054 4.613944 GTGCCTATGCGTTGTACTGTATA 58.386 43.478 0.00 0.00 41.78 1.47
1006 1055 3.454375 GTGCCTATGCGTTGTACTGTAT 58.546 45.455 0.00 0.00 41.78 2.29
1007 1056 2.732912 CGTGCCTATGCGTTGTACTGTA 60.733 50.000 0.00 0.00 41.78 2.74
1008 1057 1.722011 GTGCCTATGCGTTGTACTGT 58.278 50.000 0.00 0.00 41.78 3.55
1009 1058 0.645355 CGTGCCTATGCGTTGTACTG 59.355 55.000 0.00 0.00 41.78 2.74
1010 1059 0.528924 TCGTGCCTATGCGTTGTACT 59.471 50.000 0.00 0.00 41.78 2.73
1011 1060 0.643820 GTCGTGCCTATGCGTTGTAC 59.356 55.000 0.00 0.00 41.78 2.90
1023 1072 0.307760 CTTGTTCCTTGTGTCGTGCC 59.692 55.000 0.00 0.00 0.00 5.01
1053 1102 4.944930 CGCTCCTCTGCCTAGTTATATACT 59.055 45.833 0.00 0.00 41.04 2.12
1059 1108 1.392710 GCCGCTCCTCTGCCTAGTTA 61.393 60.000 0.00 0.00 0.00 2.24
1076 1128 1.651987 TATACGTCTTGCTTGCTGCC 58.348 50.000 0.00 0.00 42.00 4.85
1097 1156 4.776322 CGCCTTGGCCACCATCGA 62.776 66.667 3.88 0.00 31.53 3.59
1256 1388 4.222847 CCGGCGGAGGTAGAAGGC 62.223 72.222 24.41 0.00 0.00 4.35
1277 1409 2.586792 GAGCGACTTCCTGGCCAT 59.413 61.111 5.51 0.00 0.00 4.40
1362 1494 3.752665 GATGAATGGTGCATGGAGAGAT 58.247 45.455 0.00 0.00 0.00 2.75
1375 1517 5.865552 AGAAAAGAAATTGCACGATGAATGG 59.134 36.000 0.00 0.00 0.00 3.16
1379 1521 4.321156 CCCAGAAAAGAAATTGCACGATGA 60.321 41.667 0.00 0.00 0.00 2.92
1381 1523 3.826157 TCCCAGAAAAGAAATTGCACGAT 59.174 39.130 0.00 0.00 0.00 3.73
1382 1524 3.004315 GTCCCAGAAAAGAAATTGCACGA 59.996 43.478 0.00 0.00 0.00 4.35
1383 1525 3.243367 TGTCCCAGAAAAGAAATTGCACG 60.243 43.478 0.00 0.00 0.00 5.34
1763 2103 0.615331 ATGGAATGCACTCGTGGACT 59.385 50.000 0.00 0.00 32.58 3.85
1771 2111 2.596346 TGTGTGGAAATGGAATGCACT 58.404 42.857 0.00 0.00 39.55 4.40
1799 2191 1.277842 ACATCATAAGTGCCACGGACA 59.722 47.619 0.00 0.00 0.00 4.02
1813 2217 1.159285 CTCACAACGCACCACATCAT 58.841 50.000 0.00 0.00 0.00 2.45
1826 2253 4.385825 GAGGGTCAATGTTACACTCACAA 58.614 43.478 0.72 0.00 45.07 3.33
1959 2419 0.038067 TTGGAGTTCGAATCGGCGAA 60.038 50.000 15.93 0.00 46.77 4.70
1967 2439 1.070105 CCCCGTGTTGGAGTTCGAA 59.930 57.895 0.00 0.00 42.00 3.71
2222 2718 4.351938 TGGAAGTCGACGGCCGTG 62.352 66.667 39.65 26.80 39.75 4.94
2233 2729 4.265073 GCTATTGTCATTCTGGTGGAAGT 58.735 43.478 0.00 0.00 37.36 3.01
2250 2746 2.511600 GGCGACAGCGTGGCTATT 60.512 61.111 13.25 0.00 46.35 1.73
2261 2757 1.833434 AAAAATCGTTCGCGGCGACA 61.833 50.000 26.40 13.51 41.33 4.35
2288 2784 1.082206 CTCCCCCAAGTACCCCTCA 59.918 63.158 0.00 0.00 0.00 3.86
2302 2807 0.598680 CAACATCCTCGCGATCTCCC 60.599 60.000 10.36 0.00 0.00 4.30
2342 2847 7.035840 ACCGTATGATCTGTAGTCGTAAAAT 57.964 36.000 0.00 0.00 0.00 1.82
2467 3019 0.605589 AAAGCAGCCGAGTGTTACCC 60.606 55.000 0.00 0.00 0.00 3.69
2486 3038 1.314730 GCCGTTCCTTTCAGTTTCCA 58.685 50.000 0.00 0.00 0.00 3.53
2583 3206 2.648059 GTAGAAGCCGAGTACTACCCA 58.352 52.381 0.00 0.00 31.98 4.51
2717 3344 0.976641 AACAAGGACGAGATGAGCCA 59.023 50.000 0.00 0.00 0.00 4.75
2745 3394 6.978343 TTTCAGGGACATTGTTAAGATACG 57.022 37.500 0.00 0.00 0.00 3.06
2746 3395 8.506168 TGATTTCAGGGACATTGTTAAGATAC 57.494 34.615 0.00 0.00 0.00 2.24
2946 3689 8.967664 AATGTAATCATTTGGGGAATCATTTG 57.032 30.769 0.00 0.00 40.88 2.32
2950 3693 6.389830 CGAATGTAATCATTTGGGGAATCA 57.610 37.500 0.00 0.00 43.33 2.57
2968 3711 1.009829 GTTGCTAGCTGGACCGAATG 58.990 55.000 17.23 0.00 0.00 2.67
2979 3722 0.609131 TTTGCTCCAGGGTTGCTAGC 60.609 55.000 8.10 8.10 34.30 3.42
3016 3761 2.852281 TTGTTTCCTCCCAGGGGCC 61.852 63.158 5.33 0.00 35.59 5.80
3024 3769 3.733960 GCGGGCGTTGTTTCCTCC 61.734 66.667 0.00 0.00 0.00 4.30
3025 3770 4.084888 CGCGGGCGTTGTTTCCTC 62.085 66.667 4.64 0.00 34.35 3.71
3058 3803 4.208686 CTAGCCGCCCGAGTCACC 62.209 72.222 0.00 0.00 0.00 4.02
3059 3804 2.221906 TTTCTAGCCGCCCGAGTCAC 62.222 60.000 0.00 0.00 0.00 3.67
3060 3805 1.980232 TTTCTAGCCGCCCGAGTCA 60.980 57.895 0.00 0.00 0.00 3.41
3061 3806 1.518792 GTTTCTAGCCGCCCGAGTC 60.519 63.158 0.00 0.00 0.00 3.36
3062 3807 2.577593 GTTTCTAGCCGCCCGAGT 59.422 61.111 0.00 0.00 0.00 4.18
3063 3808 1.389609 TAGGTTTCTAGCCGCCCGAG 61.390 60.000 0.00 0.00 0.00 4.63
3064 3809 1.380246 TAGGTTTCTAGCCGCCCGA 60.380 57.895 0.00 0.00 0.00 5.14
3065 3810 1.067582 CTAGGTTTCTAGCCGCCCG 59.932 63.158 0.00 0.00 36.86 6.13
3072 3817 1.591863 GCGGCGGCTAGGTTTCTAG 60.592 63.158 9.78 0.00 44.40 2.43
3073 3818 2.497770 GCGGCGGCTAGGTTTCTA 59.502 61.111 9.78 0.00 35.83 2.10
3074 3819 4.468689 GGCGGCGGCTAGGTTTCT 62.469 66.667 27.22 0.00 39.81 2.52
3094 3839 4.394712 AGGAGGGAGTTTGCGGCG 62.395 66.667 0.51 0.51 0.00 6.46
3095 3840 2.436824 GAGGAGGGAGTTTGCGGC 60.437 66.667 0.00 0.00 0.00 6.53
3096 3841 2.269241 GGAGGAGGGAGTTTGCGG 59.731 66.667 0.00 0.00 0.00 5.69
3097 3842 2.125512 CGGAGGAGGGAGTTTGCG 60.126 66.667 0.00 0.00 0.00 4.85
3098 3843 2.436824 GCGGAGGAGGGAGTTTGC 60.437 66.667 0.00 0.00 0.00 3.68
3099 3844 1.219393 GAGCGGAGGAGGGAGTTTG 59.781 63.158 0.00 0.00 0.00 2.93
3100 3845 1.990614 GGAGCGGAGGAGGGAGTTT 60.991 63.158 0.00 0.00 0.00 2.66
3101 3846 2.364448 GGAGCGGAGGAGGGAGTT 60.364 66.667 0.00 0.00 0.00 3.01
3102 3847 4.467107 GGGAGCGGAGGAGGGAGT 62.467 72.222 0.00 0.00 0.00 3.85
3103 3848 4.150454 AGGGAGCGGAGGAGGGAG 62.150 72.222 0.00 0.00 0.00 4.30
3104 3849 4.144727 GAGGGAGCGGAGGAGGGA 62.145 72.222 0.00 0.00 0.00 4.20
3170 3915 3.551407 GAGGAGATCCCCCGCCAC 61.551 72.222 0.00 0.00 36.42 5.01
3171 3916 3.758133 GAGAGGAGATCCCCCGCCA 62.758 68.421 0.00 0.00 36.42 5.69
3172 3917 2.920384 GAGAGGAGATCCCCCGCC 60.920 72.222 0.00 0.00 36.42 6.13
3173 3918 1.906333 GAGAGAGGAGATCCCCCGC 60.906 68.421 0.00 0.00 36.42 6.13
3174 3919 1.602323 CGAGAGAGGAGATCCCCCG 60.602 68.421 0.00 0.00 36.42 5.73
3175 3920 1.906333 GCGAGAGAGGAGATCCCCC 60.906 68.421 0.00 0.00 36.42 5.40
3176 3921 2.265182 CGCGAGAGAGGAGATCCCC 61.265 68.421 0.00 0.00 36.42 4.81
3177 3922 2.914908 GCGCGAGAGAGGAGATCCC 61.915 68.421 12.10 0.00 36.42 3.85
3178 3923 2.642700 GCGCGAGAGAGGAGATCC 59.357 66.667 12.10 0.00 0.00 3.36
3179 3924 2.251075 CGCGCGAGAGAGGAGATC 59.749 66.667 28.94 0.00 0.00 2.75
3180 3925 2.515057 ACGCGCGAGAGAGGAGAT 60.515 61.111 39.36 6.60 33.96 2.75
3181 3926 3.196394 GACGCGCGAGAGAGGAGA 61.196 66.667 39.36 0.00 33.96 3.71
3182 3927 3.163110 GAGACGCGCGAGAGAGGAG 62.163 68.421 39.36 3.76 33.96 3.69
3183 3928 3.196394 GAGACGCGCGAGAGAGGA 61.196 66.667 39.36 0.00 33.96 3.71
3184 3929 4.244802 GGAGACGCGCGAGAGAGG 62.245 72.222 39.36 5.57 33.96 3.69
3209 3954 4.410400 CACGCCTTGGGGTCCTCC 62.410 72.222 6.38 0.00 34.45 4.30
3210 3955 3.637273 ACACGCCTTGGGGTCCTC 61.637 66.667 6.38 0.00 34.45 3.71
3211 3956 3.953775 CACACGCCTTGGGGTCCT 61.954 66.667 6.38 0.00 34.45 3.85
3232 3977 4.286320 ATCCCAGATCGGTCGCGC 62.286 66.667 0.00 0.00 0.00 6.86
3233 3978 2.049985 GATCCCAGATCGGTCGCG 60.050 66.667 0.00 0.00 0.00 5.87
3234 3979 1.006805 CAGATCCCAGATCGGTCGC 60.007 63.158 0.00 0.00 0.00 5.19
3235 3980 1.006805 GCAGATCCCAGATCGGTCG 60.007 63.158 6.60 0.00 0.00 4.79
3236 3981 0.033228 CTGCAGATCCCAGATCGGTC 59.967 60.000 8.42 0.00 32.03 4.79
3237 3982 2.037620 GCTGCAGATCCCAGATCGGT 62.038 60.000 20.43 0.00 32.03 4.69
3238 3983 1.301558 GCTGCAGATCCCAGATCGG 60.302 63.158 20.43 1.00 32.03 4.18
3239 3984 1.664017 CGCTGCAGATCCCAGATCG 60.664 63.158 20.43 3.82 32.03 3.69
3240 3985 1.960250 GCGCTGCAGATCCCAGATC 60.960 63.158 20.43 0.00 32.03 2.75
3241 3986 2.110627 GCGCTGCAGATCCCAGAT 59.889 61.111 20.43 0.00 32.03 2.90
3242 3987 4.519437 CGCGCTGCAGATCCCAGA 62.519 66.667 20.43 0.00 32.03 3.86
3289 4034 4.394078 CAAGCCGTCGTCGTCCGA 62.394 66.667 0.71 0.00 45.00 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.