Multiple sequence alignment - TraesCS5D01G420800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G420800 chr5D 100.000 3337 0 0 1 3337 481182692 481186028 0.000000e+00 6163.0
1 TraesCS5D01G420800 chr5D 84.615 1352 98 41 982 2292 481302941 481304223 0.000000e+00 1243.0
2 TraesCS5D01G420800 chr5D 87.548 1044 68 22 1250 2282 481425928 481426920 0.000000e+00 1151.0
3 TraesCS5D01G420800 chr5D 79.784 648 60 40 634 1241 481425151 481425767 4.010000e-109 405.0
4 TraesCS5D01G420800 chr5D 76.454 361 54 20 2498 2843 481164428 481164772 2.060000e-37 167.0
5 TraesCS5D01G420800 chr5D 76.224 286 40 13 361 623 426979468 426979188 3.500000e-25 126.0
6 TraesCS5D01G420800 chr5D 80.814 172 9 8 2538 2685 481304376 481304547 2.720000e-21 113.0
7 TraesCS5D01G420800 chr5D 92.982 57 3 1 412 468 427152842 427152787 7.670000e-12 82.4
8 TraesCS5D01G420800 chr5B 88.525 1865 122 43 1310 3126 589677262 589679082 0.000000e+00 2174.0
9 TraesCS5D01G420800 chr5B 84.230 1357 100 32 982 2286 589894272 589895566 0.000000e+00 1216.0
10 TraesCS5D01G420800 chr5B 86.004 986 66 25 1303 2265 589998698 589999634 0.000000e+00 990.0
11 TraesCS5D01G420800 chr5B 93.355 602 31 5 633 1232 589676503 589677097 0.000000e+00 881.0
12 TraesCS5D01G420800 chr5B 82.919 603 58 24 660 1241 589998031 589998609 4.970000e-138 501.0
13 TraesCS5D01G420800 chr5B 76.015 271 47 11 359 615 388730231 388729965 1.260000e-24 124.0
14 TraesCS5D01G420800 chr5B 79.651 172 32 2 454 624 622552550 622552719 1.630000e-23 121.0
15 TraesCS5D01G420800 chr5B 81.034 174 7 10 2538 2685 589895731 589895904 7.570000e-22 115.0
16 TraesCS5D01G420800 chr5B 89.552 67 7 0 500 566 420013657 420013591 5.930000e-13 86.1
17 TraesCS5D01G420800 chr5B 87.931 58 4 2 12 66 589676322 589676379 7.730000e-07 65.8
18 TraesCS5D01G420800 chr5A 90.205 1266 71 17 1717 2957 600237624 600238861 0.000000e+00 1602.0
19 TraesCS5D01G420800 chr5A 84.695 1359 105 43 982 2292 600361474 600362777 0.000000e+00 1262.0
20 TraesCS5D01G420800 chr5A 97.537 609 15 0 633 1241 600236535 600237143 0.000000e+00 1042.0
21 TraesCS5D01G420800 chr5A 82.442 1122 76 55 634 1680 600437965 600439040 0.000000e+00 869.0
22 TraesCS5D01G420800 chr5A 89.278 457 24 14 1242 1680 600237174 600237623 1.750000e-152 549.0
23 TraesCS5D01G420800 chr5A 84.534 569 41 11 1717 2282 600439041 600439565 1.370000e-143 520.0
24 TraesCS5D01G420800 chr5A 91.304 69 3 3 1 66 600234432 600234500 1.270000e-14 91.6
25 TraesCS5D01G420800 chr4B 85.239 691 72 16 989 1654 663942170 663941485 0.000000e+00 684.0
26 TraesCS5D01G420800 chr4B 83.393 560 65 11 1707 2263 663941375 663940841 8.320000e-136 494.0
27 TraesCS5D01G420800 chr4D 86.532 297 31 6 986 1273 506470753 506471049 5.370000e-83 318.0
28 TraesCS5D01G420800 chr4D 88.263 213 13 4 3135 3335 201880231 201880019 9.250000e-61 244.0
29 TraesCS5D01G420800 chr4D 89.600 125 7 3 1688 1812 506471114 506471232 1.600000e-33 154.0
30 TraesCS5D01G420800 chr7D 84.502 271 33 7 357 623 78671058 78671323 3.300000e-65 259.0
31 TraesCS5D01G420800 chr7A 84.314 204 30 2 389 592 26089135 26089336 7.300000e-47 198.0
32 TraesCS5D01G420800 chr7A 79.452 219 26 12 3132 3335 55010322 55010536 1.610000e-28 137.0
33 TraesCS5D01G420800 chr7A 85.393 89 10 3 3248 3335 495570833 495570747 4.590000e-14 89.8
34 TraesCS5D01G420800 chr3D 82.075 212 22 9 3136 3332 271437096 271437306 2.060000e-37 167.0
35 TraesCS5D01G420800 chr2B 81.765 170 28 3 454 623 654747802 654747968 4.490000e-29 139.0
36 TraesCS5D01G420800 chr7B 78.744 207 29 14 3135 3335 111989657 111989460 1.260000e-24 124.0
37 TraesCS5D01G420800 chr1A 75.618 283 48 10 361 622 33893029 33893311 1.630000e-23 121.0
38 TraesCS5D01G420800 chr1A 74.275 276 51 12 359 620 13879053 13879322 7.620000e-17 99.0
39 TraesCS5D01G420800 chr1D 86.747 83 11 0 3031 3113 41499648 41499730 3.540000e-15 93.5
40 TraesCS5D01G420800 chr1B 85.556 90 11 2 489 578 465270189 465270276 3.540000e-15 93.5
41 TraesCS5D01G420800 chr2D 81.513 119 12 6 2999 3110 448207126 448207011 4.590000e-14 89.8
42 TraesCS5D01G420800 chr2A 83.908 87 10 3 3037 3121 592850363 592850279 2.760000e-11 80.5
43 TraesCS5D01G420800 chr2A 91.111 45 4 0 3046 3090 771786874 771786830 1.000000e-05 62.1
44 TraesCS5D01G420800 chr6B 91.071 56 5 0 3054 3109 682422081 682422026 3.570000e-10 76.8
45 TraesCS5D01G420800 chr6D 87.500 64 8 0 3045 3108 449840577 449840640 1.280000e-09 75.0
46 TraesCS5D01G420800 chr3A 73.874 222 40 11 370 578 176139705 176139489 4.620000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G420800 chr5D 481182692 481186028 3336 False 6163.000000 6163 100.0000 1 3337 1 chr5D.!!$F2 3336
1 TraesCS5D01G420800 chr5D 481425151 481426920 1769 False 778.000000 1151 83.6660 634 2282 2 chr5D.!!$F4 1648
2 TraesCS5D01G420800 chr5D 481302941 481304547 1606 False 678.000000 1243 82.7145 982 2685 2 chr5D.!!$F3 1703
3 TraesCS5D01G420800 chr5B 589676322 589679082 2760 False 1040.266667 2174 89.9370 12 3126 3 chr5B.!!$F2 3114
4 TraesCS5D01G420800 chr5B 589998031 589999634 1603 False 745.500000 990 84.4615 660 2265 2 chr5B.!!$F4 1605
5 TraesCS5D01G420800 chr5B 589894272 589895904 1632 False 665.500000 1216 82.6320 982 2685 2 chr5B.!!$F3 1703
6 TraesCS5D01G420800 chr5A 600361474 600362777 1303 False 1262.000000 1262 84.6950 982 2292 1 chr5A.!!$F1 1310
7 TraesCS5D01G420800 chr5A 600234432 600238861 4429 False 821.150000 1602 92.0810 1 2957 4 chr5A.!!$F2 2956
8 TraesCS5D01G420800 chr5A 600437965 600439565 1600 False 694.500000 869 83.4880 634 2282 2 chr5A.!!$F3 1648
9 TraesCS5D01G420800 chr4B 663940841 663942170 1329 True 589.000000 684 84.3160 989 2263 2 chr4B.!!$R1 1274

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 225 0.032615 AACCAAAACAGGCCAGGTCA 60.033 50.0 5.01 0.0 0.00 4.02 F
497 2282 0.108396 AACTGCAAAATTGGGGTGCC 59.892 50.0 0.00 0.0 37.48 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2057 4229 0.036388 GAGCGTTCCATTGTCCCTGA 60.036 55.0 0.0 0.00 0.00 3.86 R
2404 4623 1.586154 GAGGGCGAACCATGGTGTTG 61.586 60.0 20.6 12.45 43.89 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 146 4.330740 TTTTAAATGCTACGTTCCGAGC 57.669 40.909 0.00 0.00 39.25 5.03
106 152 1.270068 GCTACGTTCCGAGCTTTCTC 58.730 55.000 0.00 0.00 35.73 2.87
119 165 2.893489 AGCTTTCTCAACCAATCAACCC 59.107 45.455 0.00 0.00 0.00 4.11
121 167 2.302587 TTCTCAACCAATCAACCCCC 57.697 50.000 0.00 0.00 0.00 5.40
132 178 3.541242 ATCAACCCCCTGATTTTCACA 57.459 42.857 0.00 0.00 31.84 3.58
165 211 3.580895 GGGCCTTCTTAATTTCCAACCAA 59.419 43.478 0.84 0.00 0.00 3.67
166 212 4.041075 GGGCCTTCTTAATTTCCAACCAAA 59.959 41.667 0.84 0.00 0.00 3.28
167 213 5.455469 GGGCCTTCTTAATTTCCAACCAAAA 60.455 40.000 0.84 0.00 0.00 2.44
169 215 6.052360 GCCTTCTTAATTTCCAACCAAAACA 58.948 36.000 0.00 0.00 0.00 2.83
170 216 6.202762 GCCTTCTTAATTTCCAACCAAAACAG 59.797 38.462 0.00 0.00 0.00 3.16
171 217 6.705825 CCTTCTTAATTTCCAACCAAAACAGG 59.294 38.462 0.00 0.00 0.00 4.00
173 219 2.928801 ATTTCCAACCAAAACAGGCC 57.071 45.000 0.00 0.00 0.00 5.19
174 220 1.573108 TTTCCAACCAAAACAGGCCA 58.427 45.000 5.01 0.00 0.00 5.36
175 221 1.118838 TTCCAACCAAAACAGGCCAG 58.881 50.000 5.01 0.00 0.00 4.85
176 222 0.758685 TCCAACCAAAACAGGCCAGG 60.759 55.000 5.01 0.00 0.00 4.45
178 224 0.389025 CAACCAAAACAGGCCAGGTC 59.611 55.000 5.01 0.00 0.00 3.85
179 225 0.032615 AACCAAAACAGGCCAGGTCA 60.033 50.000 5.01 0.00 0.00 4.02
180 226 0.188342 ACCAAAACAGGCCAGGTCAT 59.812 50.000 5.01 0.00 0.00 3.06
181 227 0.890683 CCAAAACAGGCCAGGTCATC 59.109 55.000 5.01 0.00 0.00 2.92
182 228 0.890683 CAAAACAGGCCAGGTCATCC 59.109 55.000 5.01 0.00 0.00 3.51
183 229 0.251787 AAAACAGGCCAGGTCATCCC 60.252 55.000 5.01 0.00 0.00 3.85
184 230 2.484287 AAACAGGCCAGGTCATCCCG 62.484 60.000 5.01 0.00 38.74 5.14
185 231 3.402681 CAGGCCAGGTCATCCCGT 61.403 66.667 5.01 0.00 38.74 5.28
186 232 2.610859 AGGCCAGGTCATCCCGTT 60.611 61.111 5.01 0.00 38.74 4.44
187 233 1.306654 AGGCCAGGTCATCCCGTTA 60.307 57.895 5.01 0.00 38.74 3.18
188 234 1.146263 GGCCAGGTCATCCCGTTAG 59.854 63.158 0.00 0.00 38.74 2.34
189 235 1.623542 GGCCAGGTCATCCCGTTAGT 61.624 60.000 0.00 0.00 38.74 2.24
190 236 1.117150 GCCAGGTCATCCCGTTAGTA 58.883 55.000 0.00 0.00 38.74 1.82
191 237 1.483415 GCCAGGTCATCCCGTTAGTAA 59.517 52.381 0.00 0.00 38.74 2.24
192 238 2.483188 GCCAGGTCATCCCGTTAGTAAG 60.483 54.545 0.00 0.00 38.74 2.34
193 239 2.764572 CCAGGTCATCCCGTTAGTAAGT 59.235 50.000 0.00 0.00 38.74 2.24
194 240 3.197116 CCAGGTCATCCCGTTAGTAAGTT 59.803 47.826 0.00 0.00 38.74 2.66
195 241 4.403432 CCAGGTCATCCCGTTAGTAAGTTA 59.597 45.833 0.00 0.00 38.74 2.24
196 242 5.105228 CCAGGTCATCCCGTTAGTAAGTTAA 60.105 44.000 0.00 0.00 38.74 2.01
197 243 6.040878 CAGGTCATCCCGTTAGTAAGTTAAG 58.959 44.000 0.00 0.00 38.74 1.85
198 244 5.718607 AGGTCATCCCGTTAGTAAGTTAAGT 59.281 40.000 0.00 0.00 38.74 2.24
199 245 6.891908 AGGTCATCCCGTTAGTAAGTTAAGTA 59.108 38.462 0.00 0.00 38.74 2.24
200 246 7.397192 AGGTCATCCCGTTAGTAAGTTAAGTAA 59.603 37.037 0.00 0.00 38.74 2.24
201 247 7.489435 GGTCATCCCGTTAGTAAGTTAAGTAAC 59.511 40.741 6.43 6.43 36.46 2.50
202 248 8.028938 GTCATCCCGTTAGTAAGTTAAGTAACA 58.971 37.037 13.19 0.45 38.62 2.41
203 249 8.584157 TCATCCCGTTAGTAAGTTAAGTAACAA 58.416 33.333 13.19 3.38 38.62 2.83
204 250 9.374838 CATCCCGTTAGTAAGTTAAGTAACAAT 57.625 33.333 13.19 0.00 38.62 2.71
205 251 8.761575 TCCCGTTAGTAAGTTAAGTAACAATG 57.238 34.615 13.19 0.00 38.62 2.82
206 252 8.367156 TCCCGTTAGTAAGTTAAGTAACAATGT 58.633 33.333 13.19 0.00 38.62 2.71
207 253 8.992073 CCCGTTAGTAAGTTAAGTAACAATGTT 58.008 33.333 3.43 3.43 38.62 2.71
259 305 5.943416 TGTTTATGTATGTGTAGCAAAGCCT 59.057 36.000 0.00 0.00 0.00 4.58
261 307 7.608376 TGTTTATGTATGTGTAGCAAAGCCTTA 59.392 33.333 0.00 0.00 0.00 2.69
267 313 7.812191 TGTATGTGTAGCAAAGCCTTAAATTTG 59.188 33.333 0.00 4.05 39.01 2.32
280 326 8.563123 AGCCTTAAATTTGTTACTCTCTAACC 57.437 34.615 0.00 0.00 0.00 2.85
281 327 8.161425 AGCCTTAAATTTGTTACTCTCTAACCA 58.839 33.333 0.00 0.00 0.00 3.67
345 2130 6.633583 GCTCCTCTAAAGATTCAAGGGATTGA 60.634 42.308 0.00 0.00 0.00 2.57
382 2167 4.142609 GAGAATCTCCAACAGGCATACA 57.857 45.455 0.00 0.00 0.00 2.29
383 2168 4.517285 GAGAATCTCCAACAGGCATACAA 58.483 43.478 0.00 0.00 0.00 2.41
384 2169 4.922206 AGAATCTCCAACAGGCATACAAA 58.078 39.130 0.00 0.00 0.00 2.83
385 2170 5.324409 AGAATCTCCAACAGGCATACAAAA 58.676 37.500 0.00 0.00 0.00 2.44
386 2171 5.774690 AGAATCTCCAACAGGCATACAAAAA 59.225 36.000 0.00 0.00 0.00 1.94
387 2172 4.846779 TCTCCAACAGGCATACAAAAAC 57.153 40.909 0.00 0.00 0.00 2.43
388 2173 3.252215 TCTCCAACAGGCATACAAAAACG 59.748 43.478 0.00 0.00 0.00 3.60
389 2174 2.058057 CCAACAGGCATACAAAAACGC 58.942 47.619 0.00 0.00 0.00 4.84
390 2175 2.288152 CCAACAGGCATACAAAAACGCT 60.288 45.455 0.00 0.00 0.00 5.07
391 2176 2.979813 CAACAGGCATACAAAAACGCTC 59.020 45.455 0.00 0.00 0.00 5.03
392 2177 1.539827 ACAGGCATACAAAAACGCTCC 59.460 47.619 0.00 0.00 0.00 4.70
393 2178 0.802494 AGGCATACAAAAACGCTCCG 59.198 50.000 0.00 0.00 0.00 4.63
394 2179 0.800012 GGCATACAAAAACGCTCCGA 59.200 50.000 0.00 0.00 0.00 4.55
395 2180 1.202031 GGCATACAAAAACGCTCCGAG 60.202 52.381 0.00 0.00 0.00 4.63
396 2181 1.790481 GCATACAAAAACGCTCCGAGC 60.790 52.381 10.59 10.59 38.02 5.03
397 2182 1.463056 CATACAAAAACGCTCCGAGCA 59.537 47.619 20.22 0.00 42.58 4.26
398 2183 0.863144 TACAAAAACGCTCCGAGCAC 59.137 50.000 20.22 0.00 42.58 4.40
399 2184 0.814010 ACAAAAACGCTCCGAGCACT 60.814 50.000 20.22 3.34 42.58 4.40
400 2185 1.144969 CAAAAACGCTCCGAGCACTA 58.855 50.000 20.22 0.00 42.58 2.74
401 2186 1.529438 CAAAAACGCTCCGAGCACTAA 59.471 47.619 20.22 0.00 42.58 2.24
402 2187 1.873698 AAAACGCTCCGAGCACTAAA 58.126 45.000 20.22 0.00 42.58 1.85
403 2188 1.873698 AAACGCTCCGAGCACTAAAA 58.126 45.000 20.22 0.00 42.58 1.52
404 2189 2.094762 AACGCTCCGAGCACTAAAAT 57.905 45.000 20.22 0.00 42.58 1.82
405 2190 2.094762 ACGCTCCGAGCACTAAAATT 57.905 45.000 20.22 0.00 42.58 1.82
406 2191 2.000447 ACGCTCCGAGCACTAAAATTC 59.000 47.619 20.22 0.00 42.58 2.17
407 2192 1.999735 CGCTCCGAGCACTAAAATTCA 59.000 47.619 20.22 0.00 42.58 2.57
408 2193 2.415168 CGCTCCGAGCACTAAAATTCAA 59.585 45.455 20.22 0.00 42.58 2.69
409 2194 3.120338 CGCTCCGAGCACTAAAATTCAAA 60.120 43.478 20.22 0.00 42.58 2.69
410 2195 4.437390 CGCTCCGAGCACTAAAATTCAAAT 60.437 41.667 20.22 0.00 42.58 2.32
411 2196 5.402398 GCTCCGAGCACTAAAATTCAAATT 58.598 37.500 15.78 0.00 41.89 1.82
412 2197 5.863935 GCTCCGAGCACTAAAATTCAAATTT 59.136 36.000 15.78 0.00 41.89 1.82
413 2198 6.366061 GCTCCGAGCACTAAAATTCAAATTTT 59.634 34.615 15.78 15.53 44.04 1.82
414 2199 7.095649 GCTCCGAGCACTAAAATTCAAATTTTT 60.096 33.333 15.78 1.42 41.81 1.94
428 2213 3.912614 TTTTTGGGCGCCGGATAG 58.087 55.556 22.54 0.00 0.00 2.08
429 2214 2.411504 TTTTTGGGCGCCGGATAGC 61.412 57.895 22.54 7.11 0.00 2.97
430 2215 2.830186 TTTTTGGGCGCCGGATAGCT 62.830 55.000 22.54 0.00 0.00 3.32
431 2216 2.830186 TTTTGGGCGCCGGATAGCTT 62.830 55.000 22.54 0.00 0.00 3.74
432 2217 3.750373 TTGGGCGCCGGATAGCTTC 62.750 63.158 22.54 3.09 0.00 3.86
433 2218 4.235762 GGGCGCCGGATAGCTTCA 62.236 66.667 22.54 0.00 0.00 3.02
434 2219 2.663188 GGCGCCGGATAGCTTCAG 60.663 66.667 12.58 0.00 0.00 3.02
435 2220 3.341835 GCGCCGGATAGCTTCAGC 61.342 66.667 5.05 0.00 42.49 4.26
436 2221 2.106938 CGCCGGATAGCTTCAGCA 59.893 61.111 5.05 0.00 45.16 4.41
437 2222 1.953138 CGCCGGATAGCTTCAGCAG 60.953 63.158 5.05 0.00 45.16 4.24
438 2223 1.443407 GCCGGATAGCTTCAGCAGA 59.557 57.895 5.05 0.00 45.16 4.26
439 2224 0.179073 GCCGGATAGCTTCAGCAGAA 60.179 55.000 5.05 0.00 45.16 3.02
440 2225 1.743772 GCCGGATAGCTTCAGCAGAAA 60.744 52.381 5.05 0.00 45.16 2.52
441 2226 1.936547 CCGGATAGCTTCAGCAGAAAC 59.063 52.381 0.00 0.00 45.16 2.78
442 2227 2.419297 CCGGATAGCTTCAGCAGAAACT 60.419 50.000 0.00 0.26 45.16 2.66
443 2228 2.606725 CGGATAGCTTCAGCAGAAACTG 59.393 50.000 5.13 0.00 45.16 3.16
444 2229 3.604582 GGATAGCTTCAGCAGAAACTGT 58.395 45.455 5.13 0.00 45.16 3.55
445 2230 4.678044 CGGATAGCTTCAGCAGAAACTGTA 60.678 45.833 5.13 0.00 45.16 2.74
446 2231 5.178797 GGATAGCTTCAGCAGAAACTGTAA 58.821 41.667 5.13 0.00 45.16 2.41
447 2232 5.643777 GGATAGCTTCAGCAGAAACTGTAAA 59.356 40.000 5.13 0.00 45.16 2.01
448 2233 6.149474 GGATAGCTTCAGCAGAAACTGTAAAA 59.851 38.462 5.13 0.00 45.16 1.52
449 2234 7.148171 GGATAGCTTCAGCAGAAACTGTAAAAT 60.148 37.037 5.13 0.00 45.16 1.82
450 2235 8.792830 ATAGCTTCAGCAGAAACTGTAAAATA 57.207 30.769 5.13 0.00 45.16 1.40
451 2236 7.138692 AGCTTCAGCAGAAACTGTAAAATAG 57.861 36.000 0.75 0.00 45.16 1.73
452 2237 6.712547 AGCTTCAGCAGAAACTGTAAAATAGT 59.287 34.615 0.75 0.00 45.16 2.12
453 2238 6.798959 GCTTCAGCAGAAACTGTAAAATAGTG 59.201 38.462 0.00 0.00 41.59 2.74
454 2239 6.241207 TCAGCAGAAACTGTAAAATAGTGC 57.759 37.500 0.00 0.00 38.84 4.40
455 2240 5.762711 TCAGCAGAAACTGTAAAATAGTGCA 59.237 36.000 0.00 0.00 38.84 4.57
456 2241 5.853282 CAGCAGAAACTGTAAAATAGTGCAC 59.147 40.000 9.40 9.40 33.43 4.57
457 2242 4.846137 GCAGAAACTGTAAAATAGTGCACG 59.154 41.667 12.01 0.00 33.43 5.34
458 2243 4.846137 CAGAAACTGTAAAATAGTGCACGC 59.154 41.667 12.01 0.00 0.00 5.34
459 2244 3.449322 AACTGTAAAATAGTGCACGCG 57.551 42.857 12.01 3.53 0.00 6.01
460 2245 1.127951 ACTGTAAAATAGTGCACGCGC 59.872 47.619 12.01 0.00 39.24 6.86
461 2246 1.393539 CTGTAAAATAGTGCACGCGCT 59.606 47.619 12.01 10.35 39.64 5.92
462 2247 2.601314 CTGTAAAATAGTGCACGCGCTA 59.399 45.455 14.19 14.19 42.28 4.26
463 2248 2.994578 TGTAAAATAGTGCACGCGCTAA 59.005 40.909 15.63 0.00 41.55 3.09
464 2249 3.432592 TGTAAAATAGTGCACGCGCTAAA 59.567 39.130 15.63 0.00 41.55 1.85
465 2250 3.546002 AAAATAGTGCACGCGCTAAAA 57.454 38.095 15.63 0.00 41.55 1.52
466 2251 3.546002 AAATAGTGCACGCGCTAAAAA 57.454 38.095 15.63 0.00 41.55 1.94
467 2252 2.806288 ATAGTGCACGCGCTAAAAAG 57.194 45.000 15.63 0.00 41.55 2.27
468 2253 0.165079 TAGTGCACGCGCTAAAAAGC 59.835 50.000 12.01 0.00 39.64 3.51
481 2266 5.223225 GCTAAAAAGCGCTATGAGAAACT 57.777 39.130 12.05 0.00 0.00 2.66
482 2267 5.024555 GCTAAAAAGCGCTATGAGAAACTG 58.975 41.667 12.05 0.00 0.00 3.16
483 2268 3.477899 AAAAGCGCTATGAGAAACTGC 57.522 42.857 12.05 0.00 0.00 4.40
484 2269 2.099141 AAGCGCTATGAGAAACTGCA 57.901 45.000 12.05 0.00 0.00 4.41
485 2270 2.099141 AGCGCTATGAGAAACTGCAA 57.901 45.000 8.99 0.00 0.00 4.08
486 2271 2.426522 AGCGCTATGAGAAACTGCAAA 58.573 42.857 8.99 0.00 0.00 3.68
487 2272 2.813754 AGCGCTATGAGAAACTGCAAAA 59.186 40.909 8.99 0.00 0.00 2.44
488 2273 3.441572 AGCGCTATGAGAAACTGCAAAAT 59.558 39.130 8.99 0.00 0.00 1.82
489 2274 4.082571 AGCGCTATGAGAAACTGCAAAATT 60.083 37.500 8.99 0.00 0.00 1.82
490 2275 4.030977 GCGCTATGAGAAACTGCAAAATTG 59.969 41.667 0.00 0.00 0.00 2.32
491 2276 4.560035 CGCTATGAGAAACTGCAAAATTGG 59.440 41.667 0.00 0.00 0.00 3.16
492 2277 4.866486 GCTATGAGAAACTGCAAAATTGGG 59.134 41.667 0.00 0.00 0.00 4.12
493 2278 3.749665 TGAGAAACTGCAAAATTGGGG 57.250 42.857 0.00 0.00 0.00 4.96
494 2279 3.037549 TGAGAAACTGCAAAATTGGGGT 58.962 40.909 0.00 0.00 0.00 4.95
495 2280 3.181467 TGAGAAACTGCAAAATTGGGGTG 60.181 43.478 0.00 0.00 0.00 4.61
496 2281 1.872952 GAAACTGCAAAATTGGGGTGC 59.127 47.619 0.00 0.00 38.78 5.01
497 2282 0.108396 AACTGCAAAATTGGGGTGCC 59.892 50.000 0.00 0.00 37.48 5.01
498 2283 1.003476 CTGCAAAATTGGGGTGCCC 60.003 57.895 0.00 0.00 45.71 5.36
504 2289 2.759560 ATTGGGGTGCCCGATTGC 60.760 61.111 0.54 0.00 45.09 3.56
520 2305 2.800746 GCGCGCGCTTCACAATTT 60.801 55.556 44.38 0.00 38.26 1.82
521 2306 3.046460 GCGCGCGCTTCACAATTTG 62.046 57.895 44.38 10.35 38.26 2.32
522 2307 2.765150 GCGCGCTTCACAATTTGC 59.235 55.556 26.67 0.00 0.00 3.68
523 2308 2.015627 GCGCGCTTCACAATTTGCA 61.016 52.632 26.67 0.00 0.00 4.08
524 2309 1.768603 CGCGCTTCACAATTTGCAC 59.231 52.632 5.56 0.00 0.00 4.57
525 2310 0.661187 CGCGCTTCACAATTTGCACT 60.661 50.000 5.56 0.00 0.00 4.40
526 2311 1.399599 CGCGCTTCACAATTTGCACTA 60.400 47.619 5.56 0.00 0.00 2.74
527 2312 2.660490 GCGCTTCACAATTTGCACTAA 58.340 42.857 0.00 0.00 0.00 2.24
528 2313 2.658325 GCGCTTCACAATTTGCACTAAG 59.342 45.455 0.00 0.00 0.00 2.18
529 2314 3.853307 GCGCTTCACAATTTGCACTAAGT 60.853 43.478 0.00 0.00 0.00 2.24
530 2315 3.665409 CGCTTCACAATTTGCACTAAGTG 59.335 43.478 0.00 0.00 36.51 3.16
531 2316 4.610945 GCTTCACAATTTGCACTAAGTGT 58.389 39.130 0.00 0.00 36.84 3.55
532 2317 5.043248 GCTTCACAATTTGCACTAAGTGTT 58.957 37.500 1.65 0.00 34.44 3.32
533 2318 5.519927 GCTTCACAATTTGCACTAAGTGTTT 59.480 36.000 1.65 0.00 34.44 2.83
534 2319 6.035975 GCTTCACAATTTGCACTAAGTGTTTT 59.964 34.615 1.65 0.00 34.44 2.43
535 2320 7.412891 GCTTCACAATTTGCACTAAGTGTTTTT 60.413 33.333 1.65 0.00 34.44 1.94
553 2338 2.733820 TTTTAGACGCGCGTTTTTGA 57.266 40.000 38.03 20.02 0.00 2.69
554 2339 2.288365 TTTAGACGCGCGTTTTTGAG 57.712 45.000 38.03 4.76 0.00 3.02
555 2340 0.111001 TTAGACGCGCGTTTTTGAGC 60.111 50.000 38.03 21.89 0.00 4.26
556 2341 1.216298 TAGACGCGCGTTTTTGAGCA 61.216 50.000 38.03 12.46 33.99 4.26
557 2342 1.440353 GACGCGCGTTTTTGAGCAT 60.440 52.632 38.03 9.86 33.99 3.79
558 2343 1.388475 GACGCGCGTTTTTGAGCATC 61.388 55.000 38.03 16.20 33.99 3.91
559 2344 1.154413 CGCGCGTTTTTGAGCATCT 60.154 52.632 24.19 0.00 33.99 2.90
560 2345 1.390664 CGCGCGTTTTTGAGCATCTG 61.391 55.000 24.19 0.00 33.99 2.90
561 2346 1.067199 GCGCGTTTTTGAGCATCTGG 61.067 55.000 8.43 0.00 34.56 3.86
562 2347 0.238289 CGCGTTTTTGAGCATCTGGT 59.762 50.000 0.00 0.00 34.92 4.00
563 2348 1.463056 CGCGTTTTTGAGCATCTGGTA 59.537 47.619 0.00 0.00 34.92 3.25
564 2349 2.095969 CGCGTTTTTGAGCATCTGGTAA 60.096 45.455 0.00 0.00 34.92 2.85
565 2350 3.608241 CGCGTTTTTGAGCATCTGGTAAA 60.608 43.478 0.00 0.00 34.92 2.01
566 2351 3.668656 GCGTTTTTGAGCATCTGGTAAAC 59.331 43.478 0.00 0.00 34.92 2.01
567 2352 4.226761 CGTTTTTGAGCATCTGGTAAACC 58.773 43.478 0.00 0.00 34.92 3.27
568 2353 4.261405 CGTTTTTGAGCATCTGGTAAACCA 60.261 41.667 1.13 1.13 45.30 3.67
569 2354 5.596845 GTTTTTGAGCATCTGGTAAACCAA 58.403 37.500 2.97 0.00 46.97 3.67
570 2355 6.223120 GTTTTTGAGCATCTGGTAAACCAAT 58.777 36.000 2.97 0.00 46.97 3.16
571 2356 5.389859 TTTGAGCATCTGGTAAACCAATG 57.610 39.130 2.97 10.52 46.97 2.82
572 2357 4.032960 TGAGCATCTGGTAAACCAATGT 57.967 40.909 17.73 10.01 46.97 2.71
573 2358 4.406456 TGAGCATCTGGTAAACCAATGTT 58.594 39.130 17.73 14.47 46.97 2.71
574 2359 5.565509 TGAGCATCTGGTAAACCAATGTTA 58.434 37.500 17.73 8.32 46.97 2.41
575 2360 5.647658 TGAGCATCTGGTAAACCAATGTTAG 59.352 40.000 17.73 3.12 46.97 2.34
576 2361 4.949856 AGCATCTGGTAAACCAATGTTAGG 59.050 41.667 17.73 2.58 46.97 2.69
577 2362 4.705023 GCATCTGGTAAACCAATGTTAGGT 59.295 41.667 17.73 0.00 46.97 3.08
586 2371 3.089284 ACCAATGTTAGGTTTAGCAGGC 58.911 45.455 0.00 0.00 35.33 4.85
587 2372 3.245264 ACCAATGTTAGGTTTAGCAGGCT 60.245 43.478 0.00 0.00 35.33 4.58
588 2373 4.018779 ACCAATGTTAGGTTTAGCAGGCTA 60.019 41.667 0.00 0.00 35.33 3.93
589 2374 4.947388 CCAATGTTAGGTTTAGCAGGCTAA 59.053 41.667 9.56 9.56 36.81 3.09
590 2375 5.417580 CCAATGTTAGGTTTAGCAGGCTAAA 59.582 40.000 19.51 19.51 43.64 1.85
591 2376 6.071616 CCAATGTTAGGTTTAGCAGGCTAAAA 60.072 38.462 23.64 10.91 46.15 1.52
592 2377 7.375053 CAATGTTAGGTTTAGCAGGCTAAAAA 58.625 34.615 23.64 14.20 46.15 1.94
593 2378 7.718334 ATGTTAGGTTTAGCAGGCTAAAAAT 57.282 32.000 23.64 17.89 46.15 1.82
594 2379 6.919721 TGTTAGGTTTAGCAGGCTAAAAATG 58.080 36.000 23.64 0.00 46.15 2.32
595 2380 4.456280 AGGTTTAGCAGGCTAAAAATGC 57.544 40.909 23.64 13.51 46.15 3.56
602 2387 4.284378 GCAGGCTAAAAATGCTAGAGTG 57.716 45.455 0.00 0.00 37.00 3.51
603 2388 3.941483 GCAGGCTAAAAATGCTAGAGTGA 59.059 43.478 0.00 0.00 37.00 3.41
604 2389 4.201861 GCAGGCTAAAAATGCTAGAGTGAC 60.202 45.833 0.00 0.00 37.00 3.67
605 2390 4.033358 CAGGCTAAAAATGCTAGAGTGACG 59.967 45.833 0.00 0.00 0.00 4.35
606 2391 3.242446 GGCTAAAAATGCTAGAGTGACGC 60.242 47.826 0.00 0.00 0.00 5.19
607 2392 3.370978 GCTAAAAATGCTAGAGTGACGCA 59.629 43.478 0.00 0.00 38.14 5.24
608 2393 3.813529 AAAAATGCTAGAGTGACGCAC 57.186 42.857 0.00 2.28 36.37 5.34
610 2395 3.868757 AAATGCTAGAGTGACGCACTA 57.131 42.857 11.60 0.00 45.44 2.74
611 2396 3.868757 AATGCTAGAGTGACGCACTAA 57.131 42.857 11.60 4.16 45.44 2.24
612 2397 3.868757 ATGCTAGAGTGACGCACTAAA 57.131 42.857 11.60 3.87 45.44 1.85
613 2398 3.653539 TGCTAGAGTGACGCACTAAAA 57.346 42.857 11.60 1.86 45.44 1.52
614 2399 3.314553 TGCTAGAGTGACGCACTAAAAC 58.685 45.455 11.60 4.72 45.44 2.43
615 2400 3.005472 TGCTAGAGTGACGCACTAAAACT 59.995 43.478 11.60 7.88 45.44 2.66
616 2401 4.216902 TGCTAGAGTGACGCACTAAAACTA 59.783 41.667 11.60 8.46 45.44 2.24
617 2402 5.105877 TGCTAGAGTGACGCACTAAAACTAT 60.106 40.000 11.60 0.00 45.44 2.12
618 2403 5.805994 GCTAGAGTGACGCACTAAAACTATT 59.194 40.000 11.60 0.00 45.44 1.73
619 2404 6.310711 GCTAGAGTGACGCACTAAAACTATTT 59.689 38.462 11.60 0.00 45.44 1.40
620 2405 7.148623 GCTAGAGTGACGCACTAAAACTATTTT 60.149 37.037 11.60 0.00 45.44 1.82
621 2406 9.350357 CTAGAGTGACGCACTAAAACTATTTTA 57.650 33.333 11.60 0.00 45.44 1.52
690 2486 5.807520 GCTGTGAAGAAGATTCGTCAAGATA 59.192 40.000 11.86 1.18 44.86 1.98
839 2667 7.180663 AGCTTCCTACCCTATATATACAACGT 58.819 38.462 0.00 0.00 0.00 3.99
885 2716 8.824756 AAGATCCATACAAGTGTAGAACTAGA 57.175 34.615 0.00 0.00 38.56 2.43
939 2774 3.126001 ACGAGAACAAAGGCAAGATCA 57.874 42.857 0.00 0.00 0.00 2.92
1234 3088 2.892784 GGATCTCCCCAGTAAGTTCG 57.107 55.000 0.00 0.00 0.00 3.95
1237 3108 3.522553 GATCTCCCCAGTAAGTTCGTTG 58.477 50.000 0.00 0.00 0.00 4.10
1239 3110 2.298163 TCTCCCCAGTAAGTTCGTTGTC 59.702 50.000 0.00 0.00 0.00 3.18
1287 3312 6.042093 TGGAACAAGACTTCTAATCTGACAGT 59.958 38.462 1.59 0.00 31.92 3.55
1288 3313 6.367422 GGAACAAGACTTCTAATCTGACAGTG 59.633 42.308 1.59 0.00 0.00 3.66
1289 3314 5.233988 ACAAGACTTCTAATCTGACAGTGC 58.766 41.667 1.59 0.00 0.00 4.40
1290 3315 4.464069 AGACTTCTAATCTGACAGTGCC 57.536 45.455 1.59 0.00 0.00 5.01
1291 3316 3.834813 AGACTTCTAATCTGACAGTGCCA 59.165 43.478 1.59 0.00 0.00 4.92
1292 3317 4.469227 AGACTTCTAATCTGACAGTGCCAT 59.531 41.667 1.59 0.00 0.00 4.40
1293 3318 4.764172 ACTTCTAATCTGACAGTGCCATC 58.236 43.478 1.59 0.00 0.00 3.51
1294 3319 3.443099 TCTAATCTGACAGTGCCATCG 57.557 47.619 1.59 0.00 0.00 3.84
1295 3320 2.760650 TCTAATCTGACAGTGCCATCGT 59.239 45.455 1.59 0.00 0.00 3.73
1296 3321 2.015736 AATCTGACAGTGCCATCGTC 57.984 50.000 1.59 0.00 0.00 4.20
1297 3322 0.176680 ATCTGACAGTGCCATCGTCC 59.823 55.000 1.59 0.00 0.00 4.79
1457 3502 4.685026 CCGATCTACTCCGCCGCG 62.685 72.222 5.59 5.59 0.00 6.46
1502 3565 0.667792 GGCTGAAGAAGTCGCTCGTT 60.668 55.000 0.00 0.00 0.00 3.85
1562 3625 1.154205 GGATGATGCACGAGTTCCGG 61.154 60.000 0.00 0.00 43.93 5.14
1565 3628 1.741770 GATGCACGAGTTCCGGCTT 60.742 57.895 0.00 0.00 43.93 4.35
1633 3702 3.475774 CGTAAGTGGTCCACGCGC 61.476 66.667 16.44 9.13 39.64 6.86
1634 3703 3.475774 GTAAGTGGTCCACGCGCG 61.476 66.667 30.96 30.96 39.64 6.86
1635 3704 3.980989 TAAGTGGTCCACGCGCGT 61.981 61.111 32.73 32.73 39.64 6.01
1654 3771 0.527113 TGCGCATTCCATTTCCACAG 59.473 50.000 5.66 0.00 0.00 3.66
1714 3853 4.428922 CGCGTGTGATGTGGTGCG 62.429 66.667 0.00 0.00 39.57 5.34
1715 3854 4.088762 GCGTGTGATGTGGTGCGG 62.089 66.667 0.00 0.00 0.00 5.69
1718 3857 2.977456 TGTGATGTGGTGCGGTGC 60.977 61.111 0.00 0.00 0.00 5.01
1727 3866 0.536233 TGGTGCGGTGCAAAGTGTAT 60.536 50.000 0.00 0.00 41.47 2.29
1865 4007 2.591753 CCATCCACCGCCATCACT 59.408 61.111 0.00 0.00 0.00 3.41
1988 4160 1.077930 CCAGCAGCAGCACCAGTAT 60.078 57.895 3.17 0.00 45.49 2.12
2057 4229 0.390124 CCATGCACAACCAGCAGTTT 59.610 50.000 0.00 0.00 46.36 2.66
2063 4235 0.550914 ACAACCAGCAGTTTCAGGGA 59.449 50.000 0.00 0.00 36.18 4.20
2300 4509 2.747855 GCAGGAAACAGAGGGCCG 60.748 66.667 0.00 0.00 0.00 6.13
2308 4517 3.452786 CAGAGGGCCGAGCTTCGA 61.453 66.667 0.00 0.00 43.74 3.71
2333 4542 2.363018 CTCCACTCCTCGGCTCCA 60.363 66.667 0.00 0.00 0.00 3.86
2641 4889 1.338200 CGGAAGGTCTTGAAGTGGAGG 60.338 57.143 0.00 0.00 0.00 4.30
2693 4944 1.312815 GGAAACAGCAGCAGTCACTT 58.687 50.000 0.00 0.00 0.00 3.16
2708 4959 1.067846 TCACTTACTGTAGCAGCCGTG 60.068 52.381 0.00 2.29 34.37 4.94
2767 5022 2.611518 AGACAACGATAGCAGTCTTGC 58.388 47.619 0.00 0.00 46.98 4.01
2794 5049 0.471617 GGCTGGGCTCATGTATCTGT 59.528 55.000 0.00 0.00 0.00 3.41
2974 5230 4.103311 GCTCCCCAGAACCTATATTTGAGT 59.897 45.833 0.00 0.00 0.00 3.41
2981 5237 9.331282 CCCAGAACCTATATTTGAGTAGAAAAG 57.669 37.037 0.00 0.00 0.00 2.27
2982 5238 9.331282 CCAGAACCTATATTTGAGTAGAAAAGG 57.669 37.037 0.00 0.00 0.00 3.11
2987 5243 9.503369 ACCTATATTTGAGTAGAAAAGGTAGGT 57.497 33.333 0.00 0.00 36.71 3.08
3017 5273 3.952323 GGGAGTTAAGGGCATTTCTAACC 59.048 47.826 0.00 0.00 0.00 2.85
3023 5279 2.127708 AGGGCATTTCTAACCGATCCT 58.872 47.619 0.00 0.00 0.00 3.24
3024 5280 3.314693 AGGGCATTTCTAACCGATCCTA 58.685 45.455 0.00 0.00 0.00 2.94
3025 5281 3.910627 AGGGCATTTCTAACCGATCCTAT 59.089 43.478 0.00 0.00 0.00 2.57
3026 5282 4.003648 GGGCATTTCTAACCGATCCTATG 58.996 47.826 0.00 0.00 0.00 2.23
3028 5284 5.063880 GGCATTTCTAACCGATCCTATGTT 58.936 41.667 0.00 0.00 0.00 2.71
3029 5285 6.228258 GGCATTTCTAACCGATCCTATGTTA 58.772 40.000 0.00 0.00 0.00 2.41
3059 5327 6.519679 AAATTCGGTTTTACCCATCTAACC 57.480 37.500 0.00 0.00 33.75 2.85
3081 5349 0.969894 CACCTAGCCGATCCCCTAAG 59.030 60.000 0.00 0.00 0.00 2.18
3090 5358 2.168496 CGATCCCCTAAGCCGAATAGA 58.832 52.381 0.00 0.00 0.00 1.98
3122 5390 1.439543 ATCCTCTGCCACTTATCCCC 58.560 55.000 0.00 0.00 0.00 4.81
3142 5410 2.916181 CCCCCTATCGGTCCGTCC 60.916 72.222 11.88 0.00 0.00 4.79
3143 5411 2.916181 CCCCTATCGGTCCGTCCC 60.916 72.222 11.88 0.00 0.00 4.46
3144 5412 2.197875 CCCTATCGGTCCGTCCCT 59.802 66.667 11.88 0.00 0.00 4.20
3145 5413 1.902432 CCCTATCGGTCCGTCCCTC 60.902 68.421 11.88 0.00 0.00 4.30
3146 5414 2.259439 CCTATCGGTCCGTCCCTCG 61.259 68.421 11.88 0.00 39.52 4.63
3147 5415 1.525535 CTATCGGTCCGTCCCTCGT 60.526 63.158 11.88 0.00 37.94 4.18
3148 5416 0.250038 CTATCGGTCCGTCCCTCGTA 60.250 60.000 11.88 0.00 37.94 3.43
3149 5417 0.250038 TATCGGTCCGTCCCTCGTAG 60.250 60.000 11.88 0.00 37.94 3.51
3150 5418 2.955022 ATCGGTCCGTCCCTCGTAGG 62.955 65.000 11.88 0.00 37.94 3.18
3151 5419 2.044551 GGTCCGTCCCTCGTAGGT 60.045 66.667 0.00 0.00 37.94 3.08
3152 5420 2.413142 GGTCCGTCCCTCGTAGGTG 61.413 68.421 0.00 0.00 37.94 4.00
3153 5421 1.377725 GTCCGTCCCTCGTAGGTGA 60.378 63.158 0.00 0.00 37.94 4.02
3154 5422 1.377725 TCCGTCCCTCGTAGGTGAC 60.378 63.158 0.00 0.00 37.94 3.67
3171 5439 4.157817 CGGTTCACGTTAGGTCCG 57.842 61.111 0.00 0.00 37.93 4.79
3172 5440 1.444895 CGGTTCACGTTAGGTCCGG 60.445 63.158 0.00 0.00 37.93 5.14
3173 5441 1.739196 GGTTCACGTTAGGTCCGGC 60.739 63.158 0.00 0.00 0.00 6.13
3174 5442 2.090524 GTTCACGTTAGGTCCGGCG 61.091 63.158 0.00 0.00 0.00 6.46
3175 5443 2.267351 TTCACGTTAGGTCCGGCGA 61.267 57.895 9.30 0.00 0.00 5.54
3176 5444 1.597797 TTCACGTTAGGTCCGGCGAT 61.598 55.000 9.30 0.00 0.00 4.58
3177 5445 1.588139 CACGTTAGGTCCGGCGATC 60.588 63.158 9.30 0.00 0.00 3.69
3178 5446 2.353145 CGTTAGGTCCGGCGATCG 60.353 66.667 11.69 11.69 38.88 3.69
3179 5447 2.657620 GTTAGGTCCGGCGATCGC 60.658 66.667 31.52 31.52 41.06 4.58
3180 5448 4.260355 TTAGGTCCGGCGATCGCG 62.260 66.667 31.76 25.28 43.06 5.87
3200 5468 4.459089 GCGCTCCTGTCCTGGGTC 62.459 72.222 0.00 0.00 0.00 4.46
3201 5469 2.681778 CGCTCCTGTCCTGGGTCT 60.682 66.667 0.00 0.00 0.00 3.85
3202 5470 2.716017 CGCTCCTGTCCTGGGTCTC 61.716 68.421 0.00 0.00 0.00 3.36
3203 5471 2.716017 GCTCCTGTCCTGGGTCTCG 61.716 68.421 0.00 0.00 0.00 4.04
3204 5472 1.304547 CTCCTGTCCTGGGTCTCGT 60.305 63.158 0.00 0.00 0.00 4.18
3205 5473 1.599606 CTCCTGTCCTGGGTCTCGTG 61.600 65.000 0.00 0.00 0.00 4.35
3206 5474 1.606601 CCTGTCCTGGGTCTCGTGA 60.607 63.158 0.00 0.00 0.00 4.35
3207 5475 0.972983 CCTGTCCTGGGTCTCGTGAT 60.973 60.000 0.00 0.00 0.00 3.06
3208 5476 0.457851 CTGTCCTGGGTCTCGTGATC 59.542 60.000 0.00 0.00 0.00 2.92
3209 5477 0.039764 TGTCCTGGGTCTCGTGATCT 59.960 55.000 0.00 0.00 0.00 2.75
3210 5478 1.283905 TGTCCTGGGTCTCGTGATCTA 59.716 52.381 0.00 0.00 0.00 1.98
3211 5479 1.950909 GTCCTGGGTCTCGTGATCTAG 59.049 57.143 4.29 4.29 32.48 2.43
3212 5480 1.323412 CCTGGGTCTCGTGATCTAGG 58.677 60.000 14.68 14.68 43.96 3.02
3213 5481 1.323412 CTGGGTCTCGTGATCTAGGG 58.677 60.000 3.39 0.00 29.51 3.53
3214 5482 0.629596 TGGGTCTCGTGATCTAGGGT 59.370 55.000 0.00 0.00 0.00 4.34
3215 5483 1.006758 TGGGTCTCGTGATCTAGGGTT 59.993 52.381 0.00 0.00 0.00 4.11
3216 5484 2.108970 GGGTCTCGTGATCTAGGGTTT 58.891 52.381 0.00 0.00 0.00 3.27
3217 5485 2.101082 GGGTCTCGTGATCTAGGGTTTC 59.899 54.545 0.00 0.00 0.00 2.78
3218 5486 3.025262 GGTCTCGTGATCTAGGGTTTCT 58.975 50.000 0.00 0.00 0.00 2.52
3219 5487 3.447944 GGTCTCGTGATCTAGGGTTTCTT 59.552 47.826 0.00 0.00 0.00 2.52
3220 5488 4.440387 GGTCTCGTGATCTAGGGTTTCTTC 60.440 50.000 0.00 0.00 0.00 2.87
3221 5489 3.377485 TCTCGTGATCTAGGGTTTCTTCG 59.623 47.826 0.00 0.00 0.00 3.79
3222 5490 3.087031 TCGTGATCTAGGGTTTCTTCGT 58.913 45.455 0.00 0.00 0.00 3.85
3223 5491 3.508793 TCGTGATCTAGGGTTTCTTCGTT 59.491 43.478 0.00 0.00 0.00 3.85
3224 5492 3.858238 CGTGATCTAGGGTTTCTTCGTTC 59.142 47.826 0.00 0.00 0.00 3.95
3225 5493 3.858238 GTGATCTAGGGTTTCTTCGTTCG 59.142 47.826 0.00 0.00 0.00 3.95
3226 5494 3.119245 TGATCTAGGGTTTCTTCGTTCGG 60.119 47.826 0.00 0.00 0.00 4.30
3227 5495 1.547372 TCTAGGGTTTCTTCGTTCGGG 59.453 52.381 0.00 0.00 0.00 5.14
3228 5496 0.037046 TAGGGTTTCTTCGTTCGGGC 60.037 55.000 0.00 0.00 0.00 6.13
3229 5497 1.598685 GGGTTTCTTCGTTCGGGCA 60.599 57.895 0.00 0.00 0.00 5.36
3230 5498 0.958876 GGGTTTCTTCGTTCGGGCAT 60.959 55.000 0.00 0.00 0.00 4.40
3231 5499 0.446616 GGTTTCTTCGTTCGGGCATC 59.553 55.000 0.00 0.00 0.00 3.91
3232 5500 1.153353 GTTTCTTCGTTCGGGCATCA 58.847 50.000 0.00 0.00 0.00 3.07
3233 5501 1.128692 GTTTCTTCGTTCGGGCATCAG 59.871 52.381 0.00 0.00 0.00 2.90
3234 5502 0.606096 TTCTTCGTTCGGGCATCAGA 59.394 50.000 0.00 0.00 0.00 3.27
3235 5503 0.824109 TCTTCGTTCGGGCATCAGAT 59.176 50.000 0.00 0.00 0.00 2.90
3236 5504 1.202417 TCTTCGTTCGGGCATCAGATC 60.202 52.381 0.00 0.00 0.00 2.75
3237 5505 0.824109 TTCGTTCGGGCATCAGATCT 59.176 50.000 0.00 0.00 0.00 2.75
3238 5506 0.385751 TCGTTCGGGCATCAGATCTC 59.614 55.000 0.00 0.00 0.00 2.75
3239 5507 0.598680 CGTTCGGGCATCAGATCTCC 60.599 60.000 0.00 0.00 0.00 3.71
3240 5508 0.250081 GTTCGGGCATCAGATCTCCC 60.250 60.000 7.09 7.09 35.42 4.30
3241 5509 0.399091 TTCGGGCATCAGATCTCCCT 60.399 55.000 13.81 0.00 36.61 4.20
3242 5510 0.399091 TCGGGCATCAGATCTCCCTT 60.399 55.000 13.81 0.00 36.61 3.95
3243 5511 0.034616 CGGGCATCAGATCTCCCTTC 59.965 60.000 13.81 0.00 36.61 3.46
3244 5512 0.399833 GGGCATCAGATCTCCCTTCC 59.600 60.000 9.52 0.51 35.87 3.46
3245 5513 0.399833 GGCATCAGATCTCCCTTCCC 59.600 60.000 0.00 0.00 0.00 3.97
3246 5514 0.399833 GCATCAGATCTCCCTTCCCC 59.600 60.000 0.00 0.00 0.00 4.81
3247 5515 0.683973 CATCAGATCTCCCTTCCCCG 59.316 60.000 0.00 0.00 0.00 5.73
3248 5516 1.124477 ATCAGATCTCCCTTCCCCGC 61.124 60.000 0.00 0.00 0.00 6.13
3249 5517 2.840102 AGATCTCCCTTCCCCGCG 60.840 66.667 0.00 0.00 0.00 6.46
3250 5518 2.838225 GATCTCCCTTCCCCGCGA 60.838 66.667 8.23 0.00 0.00 5.87
3251 5519 2.840102 ATCTCCCTTCCCCGCGAG 60.840 66.667 8.23 0.00 0.00 5.03
3263 5531 4.838486 CGCGAGCGTCCCTCTGTC 62.838 72.222 0.00 0.00 38.49 3.51
3264 5532 3.444805 GCGAGCGTCCCTCTGTCT 61.445 66.667 0.00 0.00 38.49 3.41
3265 5533 2.995872 GCGAGCGTCCCTCTGTCTT 61.996 63.158 0.00 0.00 38.49 3.01
3266 5534 1.137825 CGAGCGTCCCTCTGTCTTC 59.862 63.158 0.00 0.00 38.49 2.87
3267 5535 1.137825 GAGCGTCCCTCTGTCTTCG 59.862 63.158 0.00 0.00 37.60 3.79
3268 5536 1.303398 AGCGTCCCTCTGTCTTCGA 60.303 57.895 0.00 0.00 0.00 3.71
3269 5537 0.681564 AGCGTCCCTCTGTCTTCGAT 60.682 55.000 0.00 0.00 0.00 3.59
3270 5538 0.248702 GCGTCCCTCTGTCTTCGATC 60.249 60.000 0.00 0.00 0.00 3.69
3271 5539 0.382515 CGTCCCTCTGTCTTCGATCC 59.617 60.000 0.00 0.00 0.00 3.36
3272 5540 0.747852 GTCCCTCTGTCTTCGATCCC 59.252 60.000 0.00 0.00 0.00 3.85
3273 5541 0.752009 TCCCTCTGTCTTCGATCCCG 60.752 60.000 0.00 0.00 37.07 5.14
3274 5542 0.752009 CCCTCTGTCTTCGATCCCGA 60.752 60.000 0.00 0.00 43.96 5.14
3275 5543 1.323412 CCTCTGTCTTCGATCCCGAT 58.677 55.000 0.00 0.00 45.10 4.18
3276 5544 1.268352 CCTCTGTCTTCGATCCCGATC 59.732 57.143 0.00 0.00 45.10 3.69
3277 5545 1.268352 CTCTGTCTTCGATCCCGATCC 59.732 57.143 0.00 0.00 45.10 3.36
3278 5546 0.315568 CTGTCTTCGATCCCGATCCC 59.684 60.000 0.00 0.00 45.10 3.85
3279 5547 1.113517 TGTCTTCGATCCCGATCCCC 61.114 60.000 0.00 0.00 45.10 4.81
3280 5548 1.113517 GTCTTCGATCCCGATCCCCA 61.114 60.000 0.00 0.00 45.10 4.96
3281 5549 0.178932 TCTTCGATCCCGATCCCCAT 60.179 55.000 0.00 0.00 45.10 4.00
3282 5550 0.247736 CTTCGATCCCGATCCCCATC 59.752 60.000 0.00 0.00 45.10 3.51
3283 5551 1.192146 TTCGATCCCGATCCCCATCC 61.192 60.000 0.00 0.00 45.10 3.51
3284 5552 1.913262 CGATCCCGATCCCCATCCA 60.913 63.158 0.00 0.00 38.22 3.41
3285 5553 1.679898 GATCCCGATCCCCATCCAC 59.320 63.158 0.00 0.00 31.76 4.02
3286 5554 1.842381 GATCCCGATCCCCATCCACC 61.842 65.000 0.00 0.00 31.76 4.61
3287 5555 3.941188 CCCGATCCCCATCCACCG 61.941 72.222 0.00 0.00 0.00 4.94
3288 5556 3.941188 CCGATCCCCATCCACCGG 61.941 72.222 0.00 0.00 0.00 5.28
3289 5557 2.842462 CGATCCCCATCCACCGGA 60.842 66.667 9.46 0.00 35.55 5.14
3290 5558 2.872388 CGATCCCCATCCACCGGAG 61.872 68.421 9.46 0.00 34.05 4.63
3304 5572 4.400961 GGAGGCCTTCTGCGTGCT 62.401 66.667 6.77 0.00 42.19 4.40
3305 5573 2.817396 GAGGCCTTCTGCGTGCTC 60.817 66.667 6.77 0.00 42.61 4.26
3306 5574 4.400961 AGGCCTTCTGCGTGCTCC 62.401 66.667 0.00 0.00 42.61 4.70
3308 5576 4.400961 GCCTTCTGCGTGCTCCCT 62.401 66.667 0.00 0.00 0.00 4.20
3309 5577 3.019003 GCCTTCTGCGTGCTCCCTA 62.019 63.158 0.00 0.00 0.00 3.53
3310 5578 1.142748 CCTTCTGCGTGCTCCCTAG 59.857 63.158 0.00 0.00 0.00 3.02
3311 5579 1.142748 CTTCTGCGTGCTCCCTAGG 59.857 63.158 0.06 0.06 0.00 3.02
3312 5580 2.303549 CTTCTGCGTGCTCCCTAGGG 62.304 65.000 23.22 23.22 0.00 3.53
3313 5581 4.537433 CTGCGTGCTCCCTAGGGC 62.537 72.222 24.42 13.14 34.68 5.19
3324 5592 4.021631 CTAGGGCGCGCGATCGTA 62.022 66.667 37.18 25.84 38.14 3.43
3325 5593 3.531920 CTAGGGCGCGCGATCGTAA 62.532 63.158 37.18 11.92 38.14 3.18
3326 5594 2.797866 CTAGGGCGCGCGATCGTAAT 62.798 60.000 37.18 13.43 38.14 1.89
3327 5595 1.576451 TAGGGCGCGCGATCGTAATA 61.576 55.000 37.18 12.35 38.14 0.98
3328 5596 2.713894 GGGCGCGCGATCGTAATAC 61.714 63.158 37.18 12.28 38.14 1.89
3329 5597 2.012414 GGCGCGCGATCGTAATACA 61.012 57.895 37.18 0.00 38.14 2.29
3330 5598 1.125266 GCGCGCGATCGTAATACAC 59.875 57.895 37.18 6.98 38.14 2.90
3331 5599 1.533988 GCGCGCGATCGTAATACACA 61.534 55.000 37.18 0.00 38.14 3.72
3332 5600 0.841356 CGCGCGATCGTAATACACAA 59.159 50.000 28.94 0.00 38.14 3.33
3333 5601 1.450533 CGCGCGATCGTAATACACAAT 59.549 47.619 28.94 0.00 38.14 2.71
3334 5602 2.468549 CGCGCGATCGTAATACACAATC 60.469 50.000 28.94 0.00 38.14 2.67
3335 5603 2.469886 GCGCGATCGTAATACACAATCA 59.530 45.455 17.81 0.00 38.14 2.57
3336 5604 3.060807 GCGCGATCGTAATACACAATCAA 60.061 43.478 17.81 0.00 38.14 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.884792 CACTTCTCAGATAATTTTGGCCTCT 59.115 40.000 3.32 0.00 0.00 3.69
7 8 5.067023 CCACTTCTCAGATAATTTTGGCCTC 59.933 44.000 3.32 0.00 0.00 4.70
53 55 0.257039 AGGAGTTAGGCAGCCCAATG 59.743 55.000 8.22 0.00 0.00 2.82
54 56 1.002857 AAGGAGTTAGGCAGCCCAAT 58.997 50.000 8.22 0.00 0.00 3.16
95 141 2.426522 TGATTGGTTGAGAAAGCTCGG 58.573 47.619 0.00 0.00 44.33 4.63
100 146 2.562738 GGGGGTTGATTGGTTGAGAAAG 59.437 50.000 0.00 0.00 0.00 2.62
106 152 2.236489 ATCAGGGGGTTGATTGGTTG 57.764 50.000 0.00 0.00 34.17 3.77
121 167 0.890683 GCCCACCCTGTGAAAATCAG 59.109 55.000 0.00 0.00 35.23 2.90
165 211 1.384191 GGGATGACCTGGCCTGTTT 59.616 57.895 3.32 0.00 35.85 2.83
166 212 2.971598 CGGGATGACCTGGCCTGTT 61.972 63.158 3.32 0.00 38.80 3.16
167 213 3.402681 CGGGATGACCTGGCCTGT 61.403 66.667 3.32 0.00 38.80 4.00
169 215 1.306654 TAACGGGATGACCTGGCCT 60.307 57.895 3.32 0.00 46.20 5.19
170 216 1.146263 CTAACGGGATGACCTGGCC 59.854 63.158 0.00 0.00 46.20 5.36
171 217 1.117150 TACTAACGGGATGACCTGGC 58.883 55.000 0.00 0.00 46.20 4.85
174 220 5.718607 ACTTAACTTACTAACGGGATGACCT 59.281 40.000 0.00 0.00 36.97 3.85
175 221 5.970592 ACTTAACTTACTAACGGGATGACC 58.029 41.667 0.00 0.00 0.00 4.02
176 222 8.028938 TGTTACTTAACTTACTAACGGGATGAC 58.971 37.037 1.04 0.00 37.12 3.06
178 224 8.761575 TTGTTACTTAACTTACTAACGGGATG 57.238 34.615 1.04 0.00 37.12 3.51
179 225 9.374838 CATTGTTACTTAACTTACTAACGGGAT 57.625 33.333 1.04 0.00 37.12 3.85
180 226 8.367156 ACATTGTTACTTAACTTACTAACGGGA 58.633 33.333 1.04 0.00 37.12 5.14
181 227 8.538409 ACATTGTTACTTAACTTACTAACGGG 57.462 34.615 1.04 0.00 37.12 5.28
240 286 7.645058 ATTTAAGGCTTTGCTACACATACAT 57.355 32.000 4.45 0.00 0.00 2.29
241 287 7.461182 AATTTAAGGCTTTGCTACACATACA 57.539 32.000 4.45 0.00 0.00 2.29
244 290 6.758254 ACAAATTTAAGGCTTTGCTACACAT 58.242 32.000 4.45 0.00 36.12 3.21
267 313 9.074443 CGAACTCTTAAATGGTTAGAGAGTAAC 57.926 37.037 0.00 2.98 44.48 2.50
280 326 3.309954 GCACCTAGCCGAACTCTTAAATG 59.690 47.826 0.00 0.00 37.23 2.32
281 327 3.532542 GCACCTAGCCGAACTCTTAAAT 58.467 45.455 0.00 0.00 37.23 1.40
313 359 7.758528 CCTTGAATCTTTAGAGGAGCAAATTTG 59.241 37.037 14.03 14.03 0.00 2.32
364 2149 5.564651 CGTTTTTGTATGCCTGTTGGAGATT 60.565 40.000 0.00 0.00 34.57 2.40
365 2150 4.082787 CGTTTTTGTATGCCTGTTGGAGAT 60.083 41.667 0.00 0.00 34.57 2.75
366 2151 3.252215 CGTTTTTGTATGCCTGTTGGAGA 59.748 43.478 0.00 0.00 34.57 3.71
367 2152 3.564511 CGTTTTTGTATGCCTGTTGGAG 58.435 45.455 0.00 0.00 34.57 3.86
368 2153 2.287909 GCGTTTTTGTATGCCTGTTGGA 60.288 45.455 0.00 0.00 34.57 3.53
369 2154 2.058057 GCGTTTTTGTATGCCTGTTGG 58.942 47.619 0.00 0.00 0.00 3.77
370 2155 2.979813 GAGCGTTTTTGTATGCCTGTTG 59.020 45.455 0.00 0.00 0.00 3.33
371 2156 2.030274 GGAGCGTTTTTGTATGCCTGTT 60.030 45.455 0.00 0.00 0.00 3.16
372 2157 1.539827 GGAGCGTTTTTGTATGCCTGT 59.460 47.619 0.00 0.00 0.00 4.00
373 2158 1.465689 CGGAGCGTTTTTGTATGCCTG 60.466 52.381 0.00 0.00 0.00 4.85
374 2159 0.802494 CGGAGCGTTTTTGTATGCCT 59.198 50.000 0.00 0.00 0.00 4.75
375 2160 0.800012 TCGGAGCGTTTTTGTATGCC 59.200 50.000 0.00 0.00 0.00 4.40
376 2161 1.790481 GCTCGGAGCGTTTTTGTATGC 60.790 52.381 15.09 0.00 0.00 3.14
377 2162 1.463056 TGCTCGGAGCGTTTTTGTATG 59.537 47.619 23.72 0.00 46.26 2.39
378 2163 1.463444 GTGCTCGGAGCGTTTTTGTAT 59.537 47.619 23.72 0.00 46.26 2.29
379 2164 0.863144 GTGCTCGGAGCGTTTTTGTA 59.137 50.000 23.72 1.90 46.26 2.41
380 2165 0.814010 AGTGCTCGGAGCGTTTTTGT 60.814 50.000 23.72 1.64 46.26 2.83
381 2166 1.144969 TAGTGCTCGGAGCGTTTTTG 58.855 50.000 23.72 0.00 46.26 2.44
382 2167 1.873698 TTAGTGCTCGGAGCGTTTTT 58.126 45.000 23.72 10.35 46.26 1.94
383 2168 1.873698 TTTAGTGCTCGGAGCGTTTT 58.126 45.000 23.72 11.96 46.26 2.43
384 2169 1.873698 TTTTAGTGCTCGGAGCGTTT 58.126 45.000 23.72 14.24 46.26 3.60
385 2170 2.094762 ATTTTAGTGCTCGGAGCGTT 57.905 45.000 23.72 16.56 46.26 4.84
386 2171 2.000447 GAATTTTAGTGCTCGGAGCGT 59.000 47.619 23.72 16.22 46.26 5.07
387 2172 1.999735 TGAATTTTAGTGCTCGGAGCG 59.000 47.619 23.72 0.00 46.26 5.03
388 2173 4.419522 TTTGAATTTTAGTGCTCGGAGC 57.580 40.909 22.78 22.78 42.82 4.70
389 2174 7.873739 AAAATTTGAATTTTAGTGCTCGGAG 57.126 32.000 11.58 0.00 44.36 4.63
411 2196 2.411504 GCTATCCGGCGCCCAAAAA 61.412 57.895 23.46 1.57 0.00 1.94
412 2197 2.826738 GCTATCCGGCGCCCAAAA 60.827 61.111 23.46 3.69 0.00 2.44
413 2198 3.338275 AAGCTATCCGGCGCCCAAA 62.338 57.895 23.46 6.70 37.29 3.28
414 2199 3.750373 GAAGCTATCCGGCGCCCAA 62.750 63.158 23.46 9.77 37.29 4.12
415 2200 4.235762 GAAGCTATCCGGCGCCCA 62.236 66.667 23.46 8.29 37.29 5.36
416 2201 4.235762 TGAAGCTATCCGGCGCCC 62.236 66.667 23.46 5.24 37.29 6.13
417 2202 2.663188 CTGAAGCTATCCGGCGCC 60.663 66.667 19.07 19.07 37.29 6.53
418 2203 3.341835 GCTGAAGCTATCCGGCGC 61.342 66.667 0.00 0.00 38.21 6.53
419 2204 1.953138 CTGCTGAAGCTATCCGGCG 60.953 63.158 0.00 0.00 42.66 6.46
420 2205 0.179073 TTCTGCTGAAGCTATCCGGC 60.179 55.000 0.00 7.35 42.66 6.13
421 2206 1.936547 GTTTCTGCTGAAGCTATCCGG 59.063 52.381 11.99 0.00 42.66 5.14
422 2207 2.606725 CAGTTTCTGCTGAAGCTATCCG 59.393 50.000 19.51 6.62 40.88 4.18
423 2208 3.604582 ACAGTTTCTGCTGAAGCTATCC 58.395 45.455 19.51 1.24 40.88 2.59
424 2209 6.727824 TTTACAGTTTCTGCTGAAGCTATC 57.272 37.500 19.51 4.96 40.88 2.08
425 2210 7.693969 ATTTTACAGTTTCTGCTGAAGCTAT 57.306 32.000 19.51 13.07 40.88 2.97
426 2211 7.878127 ACTATTTTACAGTTTCTGCTGAAGCTA 59.122 33.333 19.51 7.11 40.88 3.32
427 2212 6.712547 ACTATTTTACAGTTTCTGCTGAAGCT 59.287 34.615 15.37 15.37 43.04 3.74
428 2213 6.798959 CACTATTTTACAGTTTCTGCTGAAGC 59.201 38.462 11.44 11.44 39.62 3.86
429 2214 6.798959 GCACTATTTTACAGTTTCTGCTGAAG 59.201 38.462 6.13 0.00 39.62 3.02
430 2215 6.262049 TGCACTATTTTACAGTTTCTGCTGAA 59.738 34.615 1.33 1.33 39.62 3.02
431 2216 5.762711 TGCACTATTTTACAGTTTCTGCTGA 59.237 36.000 0.00 0.00 39.62 4.26
432 2217 5.853282 GTGCACTATTTTACAGTTTCTGCTG 59.147 40.000 10.32 0.00 41.92 4.41
433 2218 5.334105 CGTGCACTATTTTACAGTTTCTGCT 60.334 40.000 16.19 0.00 34.37 4.24
434 2219 4.846137 CGTGCACTATTTTACAGTTTCTGC 59.154 41.667 16.19 0.00 34.37 4.26
435 2220 4.846137 GCGTGCACTATTTTACAGTTTCTG 59.154 41.667 16.19 0.00 37.52 3.02
436 2221 4.377022 CGCGTGCACTATTTTACAGTTTCT 60.377 41.667 16.19 0.00 0.00 2.52
437 2222 3.838550 CGCGTGCACTATTTTACAGTTTC 59.161 43.478 16.19 0.00 0.00 2.78
438 2223 3.805823 CGCGTGCACTATTTTACAGTTT 58.194 40.909 16.19 0.00 0.00 2.66
439 2224 2.412325 GCGCGTGCACTATTTTACAGTT 60.412 45.455 17.66 0.00 42.15 3.16
440 2225 1.127951 GCGCGTGCACTATTTTACAGT 59.872 47.619 17.66 0.00 42.15 3.55
441 2226 1.393539 AGCGCGTGCACTATTTTACAG 59.606 47.619 24.79 0.00 46.23 2.74
442 2227 1.434555 AGCGCGTGCACTATTTTACA 58.565 45.000 24.79 0.00 46.23 2.41
443 2228 3.644805 TTAGCGCGTGCACTATTTTAC 57.355 42.857 24.79 0.00 46.23 2.01
444 2229 4.665281 TTTTAGCGCGTGCACTATTTTA 57.335 36.364 24.79 1.29 46.23 1.52
445 2230 3.546002 TTTTAGCGCGTGCACTATTTT 57.454 38.095 24.79 2.41 46.23 1.82
446 2231 3.488489 CTTTTTAGCGCGTGCACTATTT 58.512 40.909 24.79 3.23 46.23 1.40
447 2232 2.727916 GCTTTTTAGCGCGTGCACTATT 60.728 45.455 24.79 4.06 46.23 1.73
448 2233 1.202031 GCTTTTTAGCGCGTGCACTAT 60.202 47.619 24.79 4.49 46.23 2.12
449 2234 0.165079 GCTTTTTAGCGCGTGCACTA 59.835 50.000 24.79 4.59 46.23 2.74
450 2235 1.082104 GCTTTTTAGCGCGTGCACT 60.082 52.632 24.79 5.75 46.23 4.40
451 2236 3.437001 GCTTTTTAGCGCGTGCAC 58.563 55.556 24.79 6.82 46.23 4.57
459 2244 5.024555 CAGTTTCTCATAGCGCTTTTTAGC 58.975 41.667 18.68 0.00 0.00 3.09
460 2245 5.024555 GCAGTTTCTCATAGCGCTTTTTAG 58.975 41.667 18.68 8.88 0.00 1.85
461 2246 4.454161 TGCAGTTTCTCATAGCGCTTTTTA 59.546 37.500 18.68 0.00 0.00 1.52
462 2247 3.253188 TGCAGTTTCTCATAGCGCTTTTT 59.747 39.130 18.68 0.00 0.00 1.94
463 2248 2.813754 TGCAGTTTCTCATAGCGCTTTT 59.186 40.909 18.68 0.00 0.00 2.27
464 2249 2.426522 TGCAGTTTCTCATAGCGCTTT 58.573 42.857 18.68 4.25 0.00 3.51
465 2250 2.099141 TGCAGTTTCTCATAGCGCTT 57.901 45.000 18.68 0.00 0.00 4.68
466 2251 2.099141 TTGCAGTTTCTCATAGCGCT 57.901 45.000 17.26 17.26 0.00 5.92
467 2252 2.900122 TTTGCAGTTTCTCATAGCGC 57.100 45.000 0.00 0.00 0.00 5.92
468 2253 4.560035 CCAATTTTGCAGTTTCTCATAGCG 59.440 41.667 0.00 0.00 0.00 4.26
469 2254 4.866486 CCCAATTTTGCAGTTTCTCATAGC 59.134 41.667 0.00 0.00 0.00 2.97
470 2255 5.047092 ACCCCAATTTTGCAGTTTCTCATAG 60.047 40.000 0.00 0.00 0.00 2.23
471 2256 4.837860 ACCCCAATTTTGCAGTTTCTCATA 59.162 37.500 0.00 0.00 0.00 2.15
472 2257 3.647590 ACCCCAATTTTGCAGTTTCTCAT 59.352 39.130 0.00 0.00 0.00 2.90
473 2258 3.037549 ACCCCAATTTTGCAGTTTCTCA 58.962 40.909 0.00 0.00 0.00 3.27
474 2259 3.392882 CACCCCAATTTTGCAGTTTCTC 58.607 45.455 0.00 0.00 0.00 2.87
475 2260 2.485302 GCACCCCAATTTTGCAGTTTCT 60.485 45.455 0.00 0.00 36.22 2.52
476 2261 1.872952 GCACCCCAATTTTGCAGTTTC 59.127 47.619 0.00 0.00 36.22 2.78
477 2262 1.476652 GGCACCCCAATTTTGCAGTTT 60.477 47.619 0.00 0.00 38.04 2.66
478 2263 0.108396 GGCACCCCAATTTTGCAGTT 59.892 50.000 0.00 0.00 38.04 3.16
479 2264 1.754107 GGCACCCCAATTTTGCAGT 59.246 52.632 0.00 0.00 38.04 4.40
480 2265 4.699626 GGCACCCCAATTTTGCAG 57.300 55.556 0.00 0.00 38.04 4.41
503 2288 2.800746 AAATTGTGAAGCGCGCGC 60.801 55.556 45.10 45.10 42.33 6.86
504 2289 3.046460 GCAAATTGTGAAGCGCGCG 62.046 57.895 28.44 28.44 0.00 6.86
505 2290 2.015627 TGCAAATTGTGAAGCGCGC 61.016 52.632 26.66 26.66 0.00 6.86
506 2291 0.661187 AGTGCAAATTGTGAAGCGCG 60.661 50.000 0.00 0.00 41.96 6.86
507 2292 2.330231 TAGTGCAAATTGTGAAGCGC 57.670 45.000 0.00 0.00 37.74 5.92
508 2293 3.665409 CACTTAGTGCAAATTGTGAAGCG 59.335 43.478 0.00 0.00 0.00 4.68
509 2294 4.610945 ACACTTAGTGCAAATTGTGAAGC 58.389 39.130 12.80 0.00 36.98 3.86
510 2295 7.524294 AAAACACTTAGTGCAAATTGTGAAG 57.476 32.000 12.80 3.13 36.98 3.02
511 2296 7.897575 AAAAACACTTAGTGCAAATTGTGAA 57.102 28.000 12.80 0.00 36.98 3.18
533 2318 3.030441 CTCAAAAACGCGCGTCTAAAAA 58.970 40.909 37.77 18.60 0.00 1.94
534 2319 2.631158 CTCAAAAACGCGCGTCTAAAA 58.369 42.857 37.77 20.22 0.00 1.52
535 2320 1.658094 GCTCAAAAACGCGCGTCTAAA 60.658 47.619 37.77 19.13 0.00 1.85
536 2321 0.111001 GCTCAAAAACGCGCGTCTAA 60.111 50.000 37.77 18.40 0.00 2.10
537 2322 1.216298 TGCTCAAAAACGCGCGTCTA 61.216 50.000 37.77 18.05 0.00 2.59
538 2323 1.841663 ATGCTCAAAAACGCGCGTCT 61.842 50.000 37.77 22.47 0.00 4.18
539 2324 1.388475 GATGCTCAAAAACGCGCGTC 61.388 55.000 37.77 21.91 0.00 5.19
540 2325 1.440353 GATGCTCAAAAACGCGCGT 60.440 52.632 32.73 32.73 0.00 6.01
541 2326 1.154413 AGATGCTCAAAAACGCGCG 60.154 52.632 30.96 30.96 0.00 6.86
542 2327 1.067199 CCAGATGCTCAAAAACGCGC 61.067 55.000 5.73 0.00 0.00 6.86
543 2328 0.238289 ACCAGATGCTCAAAAACGCG 59.762 50.000 3.53 3.53 0.00 6.01
544 2329 3.552604 TTACCAGATGCTCAAAAACGC 57.447 42.857 0.00 0.00 0.00 4.84
545 2330 4.226761 GGTTTACCAGATGCTCAAAAACG 58.773 43.478 0.00 0.00 35.64 3.60
546 2331 5.195001 TGGTTTACCAGATGCTCAAAAAC 57.805 39.130 0.00 0.00 42.01 2.43
565 2350 3.089284 GCCTGCTAAACCTAACATTGGT 58.911 45.455 0.00 0.00 39.91 3.67
566 2351 3.356290 AGCCTGCTAAACCTAACATTGG 58.644 45.455 0.00 0.00 0.00 3.16
567 2352 6.509418 TTTAGCCTGCTAAACCTAACATTG 57.491 37.500 17.89 0.00 41.78 2.82
568 2353 7.533289 TTTTTAGCCTGCTAAACCTAACATT 57.467 32.000 20.70 0.00 44.95 2.71
569 2354 7.547227 CATTTTTAGCCTGCTAAACCTAACAT 58.453 34.615 20.70 6.76 44.95 2.71
570 2355 6.571537 GCATTTTTAGCCTGCTAAACCTAACA 60.572 38.462 20.70 5.77 44.95 2.41
571 2356 5.805486 GCATTTTTAGCCTGCTAAACCTAAC 59.195 40.000 20.70 8.72 44.95 2.34
572 2357 5.714806 AGCATTTTTAGCCTGCTAAACCTAA 59.285 36.000 20.70 14.24 44.95 2.69
573 2358 5.261216 AGCATTTTTAGCCTGCTAAACCTA 58.739 37.500 20.70 11.55 44.95 3.08
574 2359 4.089361 AGCATTTTTAGCCTGCTAAACCT 58.911 39.130 20.70 12.94 44.95 3.50
575 2360 4.456280 AGCATTTTTAGCCTGCTAAACC 57.544 40.909 20.70 11.33 44.95 3.27
576 2361 6.094186 ACTCTAGCATTTTTAGCCTGCTAAAC 59.906 38.462 20.70 11.39 45.14 2.01
577 2362 6.094048 CACTCTAGCATTTTTAGCCTGCTAAA 59.906 38.462 17.89 17.89 45.14 1.85
578 2363 5.586243 CACTCTAGCATTTTTAGCCTGCTAA 59.414 40.000 7.49 7.49 45.14 3.09
579 2364 5.104941 TCACTCTAGCATTTTTAGCCTGCTA 60.105 40.000 3.73 3.73 44.08 3.49
581 2366 3.941483 TCACTCTAGCATTTTTAGCCTGC 59.059 43.478 0.00 0.00 36.15 4.85
582 2367 4.033358 CGTCACTCTAGCATTTTTAGCCTG 59.967 45.833 0.00 0.00 0.00 4.85
583 2368 4.184629 CGTCACTCTAGCATTTTTAGCCT 58.815 43.478 0.00 0.00 0.00 4.58
584 2369 3.242446 GCGTCACTCTAGCATTTTTAGCC 60.242 47.826 0.00 0.00 0.00 3.93
585 2370 3.370978 TGCGTCACTCTAGCATTTTTAGC 59.629 43.478 0.00 0.00 35.81 3.09
586 2371 4.627467 AGTGCGTCACTCTAGCATTTTTAG 59.373 41.667 6.67 0.00 41.21 1.85
587 2372 4.566004 AGTGCGTCACTCTAGCATTTTTA 58.434 39.130 6.67 0.00 41.21 1.52
588 2373 3.403038 AGTGCGTCACTCTAGCATTTTT 58.597 40.909 6.67 0.00 41.21 1.94
589 2374 3.045601 AGTGCGTCACTCTAGCATTTT 57.954 42.857 6.67 0.00 41.21 1.82
590 2375 2.751166 AGTGCGTCACTCTAGCATTT 57.249 45.000 6.67 0.00 41.21 2.32
591 2376 3.868757 TTAGTGCGTCACTCTAGCATT 57.131 42.857 14.38 0.00 41.21 3.56
592 2377 3.868757 TTTAGTGCGTCACTCTAGCAT 57.131 42.857 14.38 0.00 41.21 3.79
593 2378 3.005472 AGTTTTAGTGCGTCACTCTAGCA 59.995 43.478 14.38 0.00 41.21 3.49
594 2379 3.576648 AGTTTTAGTGCGTCACTCTAGC 58.423 45.455 14.38 7.52 41.21 3.42
595 2380 7.813852 AAATAGTTTTAGTGCGTCACTCTAG 57.186 36.000 14.38 0.00 41.21 2.43
596 2381 9.350357 CTAAAATAGTTTTAGTGCGTCACTCTA 57.650 33.333 14.38 10.62 44.20 2.43
597 2382 8.240883 CTAAAATAGTTTTAGTGCGTCACTCT 57.759 34.615 14.38 9.09 44.20 3.24
618 2403 8.450964 GCTTGCATGTGTAGTTTAAGATCTAAA 58.549 33.333 0.00 0.00 0.00 1.85
619 2404 7.606073 TGCTTGCATGTGTAGTTTAAGATCTAA 59.394 33.333 0.00 0.00 0.00 2.10
620 2405 7.064609 GTGCTTGCATGTGTAGTTTAAGATCTA 59.935 37.037 0.00 0.00 0.00 1.98
621 2406 5.939883 TGCTTGCATGTGTAGTTTAAGATCT 59.060 36.000 1.14 0.00 0.00 2.75
622 2407 6.024049 GTGCTTGCATGTGTAGTTTAAGATC 58.976 40.000 0.00 0.00 0.00 2.75
623 2408 5.473162 TGTGCTTGCATGTGTAGTTTAAGAT 59.527 36.000 0.00 0.00 0.00 2.40
624 2409 4.819088 TGTGCTTGCATGTGTAGTTTAAGA 59.181 37.500 0.00 0.00 0.00 2.10
625 2410 5.107109 TGTGCTTGCATGTGTAGTTTAAG 57.893 39.130 0.00 0.00 0.00 1.85
626 2411 5.506686 TTGTGCTTGCATGTGTAGTTTAA 57.493 34.783 0.00 0.00 0.00 1.52
627 2412 5.703978 ATTGTGCTTGCATGTGTAGTTTA 57.296 34.783 0.00 0.00 0.00 2.01
628 2413 4.589216 ATTGTGCTTGCATGTGTAGTTT 57.411 36.364 0.00 0.00 0.00 2.66
629 2414 4.378356 CGTATTGTGCTTGCATGTGTAGTT 60.378 41.667 0.00 0.00 0.00 2.24
630 2415 3.125146 CGTATTGTGCTTGCATGTGTAGT 59.875 43.478 0.00 0.00 0.00 2.73
631 2416 3.125146 ACGTATTGTGCTTGCATGTGTAG 59.875 43.478 0.00 0.00 0.00 2.74
690 2486 0.885196 GACTTCTCTCGCCACAGTCT 59.115 55.000 0.00 0.00 32.64 3.24
839 2667 3.867857 TCTTCCTTGTGTTGCGCATATA 58.132 40.909 12.75 0.00 0.00 0.86
885 2716 3.397482 CTTGCTGCTGTTTCTACTCTGT 58.603 45.455 0.00 0.00 0.00 3.41
939 2774 5.275067 CTATCTAGCAAAGCTTCTCCTGT 57.725 43.478 0.00 0.00 40.44 4.00
1194 3048 2.102420 CCATGGGTCGTGCTTGTAGATA 59.898 50.000 2.85 0.00 0.00 1.98
1234 3088 5.766222 AGAAATTGCACTTGATCAGACAAC 58.234 37.500 0.00 0.00 0.00 3.32
1237 3108 7.114529 CAGAAAAGAAATTGCACTTGATCAGAC 59.885 37.037 0.00 0.00 0.00 3.51
1239 3110 6.365247 CCAGAAAAGAAATTGCACTTGATCAG 59.635 38.462 0.00 0.00 0.00 2.90
1287 3312 0.821301 TTTGCAAGTGGACGATGGCA 60.821 50.000 0.00 0.00 0.00 4.92
1288 3313 0.527565 ATTTGCAAGTGGACGATGGC 59.472 50.000 0.00 0.00 0.00 4.40
1289 3314 3.727673 CGTAATTTGCAAGTGGACGATGG 60.728 47.826 18.91 0.00 0.00 3.51
1290 3315 3.416277 CGTAATTTGCAAGTGGACGATG 58.584 45.455 18.91 0.00 0.00 3.84
1291 3316 2.159572 GCGTAATTTGCAAGTGGACGAT 60.160 45.455 24.56 3.28 0.00 3.73
1292 3317 1.195900 GCGTAATTTGCAAGTGGACGA 59.804 47.619 24.56 1.04 0.00 4.20
1293 3318 1.069568 TGCGTAATTTGCAAGTGGACG 60.070 47.619 19.20 19.20 39.87 4.79
1294 3319 2.225491 TCTGCGTAATTTGCAAGTGGAC 59.775 45.455 0.00 0.00 42.70 4.02
1295 3320 2.483877 CTCTGCGTAATTTGCAAGTGGA 59.516 45.455 0.00 0.87 42.70 4.02
1296 3321 2.414559 CCTCTGCGTAATTTGCAAGTGG 60.415 50.000 0.00 7.22 42.70 4.00
1297 3322 2.855180 CCTCTGCGTAATTTGCAAGTG 58.145 47.619 0.00 0.00 42.70 3.16
1502 3565 2.125832 GCGCTGCCACGGTAGTAA 60.126 61.111 0.00 0.00 0.00 2.24
1633 3702 0.798009 GTGGAAATGGAATGCGCACG 60.798 55.000 14.90 0.00 0.00 5.34
1634 3703 0.243365 TGTGGAAATGGAATGCGCAC 59.757 50.000 14.90 0.00 0.00 5.34
1635 3704 0.527113 CTGTGGAAATGGAATGCGCA 59.473 50.000 14.96 14.96 0.00 6.09
1636 3705 0.810648 TCTGTGGAAATGGAATGCGC 59.189 50.000 0.00 0.00 0.00 6.09
1637 3706 3.057315 ACTTTCTGTGGAAATGGAATGCG 60.057 43.478 0.00 0.00 40.19 4.73
1654 3771 1.373748 TAGCCGCACCGTGACTTTC 60.374 57.895 1.65 0.00 0.00 2.62
1698 3830 4.088762 CCGCACCACATCACACGC 62.089 66.667 0.00 0.00 0.00 5.34
1705 3837 1.827789 ACTTTGCACCGCACCACAT 60.828 52.632 0.00 0.00 38.71 3.21
1714 3853 3.119495 GGGTCAATGATACACTTTGCACC 60.119 47.826 0.00 0.00 35.63 5.01
1715 3854 3.758554 AGGGTCAATGATACACTTTGCAC 59.241 43.478 0.00 0.00 34.83 4.57
1718 3857 5.352569 GTCAGAGGGTCAATGATACACTTTG 59.647 44.000 0.00 0.00 34.61 2.77
1727 3866 1.000843 CACACGTCAGAGGGTCAATGA 59.999 52.381 0.00 0.00 0.00 2.57
1772 3911 0.837691 TCCTGCAGATGGTCCACACT 60.838 55.000 17.39 0.00 0.00 3.55
1865 4007 4.121669 GAGCTCGAGTCGGCAGCA 62.122 66.667 23.35 0.22 35.46 4.41
1916 4058 1.893137 AGGCAGTTCATGTACTCGTCA 59.107 47.619 1.42 0.00 0.00 4.35
1988 4160 2.734591 GTGCCCGTCTGACTGACA 59.265 61.111 12.33 0.00 45.60 3.58
2057 4229 0.036388 GAGCGTTCCATTGTCCCTGA 60.036 55.000 0.00 0.00 0.00 3.86
2300 4509 2.048127 AGGGTGCGTTCGAAGCTC 60.048 61.111 16.76 13.81 35.28 4.09
2308 4517 2.526873 AGGAGTGGAGGGTGCGTT 60.527 61.111 0.00 0.00 0.00 4.84
2404 4623 1.586154 GAGGGCGAACCATGGTGTTG 61.586 60.000 20.60 12.45 43.89 3.33
2611 4846 1.946984 AGACCTTCCGATGTACCCAA 58.053 50.000 0.00 0.00 0.00 4.12
2693 4944 2.577059 GGCACGGCTGCTACAGTA 59.423 61.111 0.00 0.00 43.66 2.74
2734 4989 6.198591 GCTATCGTTGTCTTGTATACTGTTCC 59.801 42.308 4.17 0.00 0.00 3.62
2794 5049 4.728772 ACCACAAGTTCCTCAATTCATGA 58.271 39.130 0.00 0.00 36.38 3.07
2989 5245 6.319715 AGAAATGCCCTTAACTCCCTAAAAA 58.680 36.000 0.00 0.00 0.00 1.94
2990 5246 5.899278 AGAAATGCCCTTAACTCCCTAAAA 58.101 37.500 0.00 0.00 0.00 1.52
2991 5247 5.530176 AGAAATGCCCTTAACTCCCTAAA 57.470 39.130 0.00 0.00 0.00 1.85
2992 5248 6.420638 GTTAGAAATGCCCTTAACTCCCTAA 58.579 40.000 0.00 0.00 0.00 2.69
2993 5249 5.104235 GGTTAGAAATGCCCTTAACTCCCTA 60.104 44.000 0.00 0.00 0.00 3.53
2994 5250 4.325109 GGTTAGAAATGCCCTTAACTCCCT 60.325 45.833 0.00 0.00 0.00 4.20
2995 5251 3.952323 GGTTAGAAATGCCCTTAACTCCC 59.048 47.826 0.00 0.00 0.00 4.30
3004 5260 2.640316 AGGATCGGTTAGAAATGCCC 57.360 50.000 0.00 0.00 0.00 5.36
3017 5273 8.700644 CCGAATTTTTACTCTAACATAGGATCG 58.299 37.037 0.00 0.00 0.00 3.69
3025 5281 8.567104 GGGTAAAACCGAATTTTTACTCTAACA 58.433 33.333 18.38 0.00 44.20 2.41
3026 5282 8.567104 TGGGTAAAACCGAATTTTTACTCTAAC 58.433 33.333 19.16 8.62 46.27 2.34
3028 5284 8.866970 ATGGGTAAAACCGAATTTTTACTCTA 57.133 30.769 19.16 11.92 46.27 2.43
3029 5285 7.668469 AGATGGGTAAAACCGAATTTTTACTCT 59.332 33.333 19.16 14.02 46.27 3.24
3050 5318 0.249911 GCTAGGTGCCGGTTAGATGG 60.250 60.000 1.90 0.00 35.15 3.51
3129 5397 3.341848 CGAGGGACGGACCGATAG 58.658 66.667 23.38 1.55 40.11 2.08
3154 5422 1.444895 CCGGACCTAACGTGAACCG 60.445 63.158 0.00 11.13 44.03 4.44
3155 5423 1.739196 GCCGGACCTAACGTGAACC 60.739 63.158 5.05 0.00 0.00 3.62
3156 5424 2.090524 CGCCGGACCTAACGTGAAC 61.091 63.158 5.05 0.00 0.00 3.18
3157 5425 1.597797 ATCGCCGGACCTAACGTGAA 61.598 55.000 5.05 0.00 0.00 3.18
3158 5426 1.996786 GATCGCCGGACCTAACGTGA 61.997 60.000 5.05 0.00 0.00 4.35
3159 5427 1.588139 GATCGCCGGACCTAACGTG 60.588 63.158 5.05 0.00 0.00 4.49
3160 5428 2.803479 GATCGCCGGACCTAACGT 59.197 61.111 5.05 0.00 0.00 3.99
3161 5429 2.353145 CGATCGCCGGACCTAACG 60.353 66.667 5.05 0.00 33.91 3.18
3162 5430 2.657620 GCGATCGCCGGACCTAAC 60.658 66.667 29.48 0.00 39.04 2.34
3163 5431 4.260355 CGCGATCGCCGGACCTAA 62.260 66.667 32.63 0.00 39.04 2.69
3183 5451 4.459089 GACCCAGGACAGGAGCGC 62.459 72.222 0.00 0.00 0.00 5.92
3184 5452 2.681778 AGACCCAGGACAGGAGCG 60.682 66.667 0.00 0.00 0.00 5.03
3185 5453 2.716017 CGAGACCCAGGACAGGAGC 61.716 68.421 0.00 0.00 0.00 4.70
3186 5454 1.304547 ACGAGACCCAGGACAGGAG 60.305 63.158 0.00 0.00 0.00 3.69
3187 5455 1.606601 CACGAGACCCAGGACAGGA 60.607 63.158 0.00 0.00 0.00 3.86
3188 5456 0.972983 ATCACGAGACCCAGGACAGG 60.973 60.000 0.00 0.00 0.00 4.00
3189 5457 0.457851 GATCACGAGACCCAGGACAG 59.542 60.000 0.00 0.00 0.00 3.51
3190 5458 0.039764 AGATCACGAGACCCAGGACA 59.960 55.000 0.00 0.00 0.00 4.02
3191 5459 1.950909 CTAGATCACGAGACCCAGGAC 59.049 57.143 0.00 0.00 0.00 3.85
3192 5460 1.133761 CCTAGATCACGAGACCCAGGA 60.134 57.143 0.00 0.00 0.00 3.86
3193 5461 1.323412 CCTAGATCACGAGACCCAGG 58.677 60.000 0.00 0.00 0.00 4.45
3194 5462 1.323412 CCCTAGATCACGAGACCCAG 58.677 60.000 0.00 0.00 0.00 4.45
3195 5463 0.629596 ACCCTAGATCACGAGACCCA 59.370 55.000 0.00 0.00 0.00 4.51
3196 5464 1.777941 AACCCTAGATCACGAGACCC 58.222 55.000 0.00 0.00 0.00 4.46
3197 5465 3.025262 AGAAACCCTAGATCACGAGACC 58.975 50.000 0.00 0.00 0.00 3.85
3198 5466 4.674475 GAAGAAACCCTAGATCACGAGAC 58.326 47.826 0.00 0.00 0.00 3.36
3199 5467 3.377485 CGAAGAAACCCTAGATCACGAGA 59.623 47.826 0.00 0.00 0.00 4.04
3200 5468 3.128938 ACGAAGAAACCCTAGATCACGAG 59.871 47.826 0.00 0.00 0.00 4.18
3201 5469 3.087031 ACGAAGAAACCCTAGATCACGA 58.913 45.455 0.00 0.00 0.00 4.35
3202 5470 3.505464 ACGAAGAAACCCTAGATCACG 57.495 47.619 0.00 0.00 0.00 4.35
3203 5471 3.858238 CGAACGAAGAAACCCTAGATCAC 59.142 47.826 0.00 0.00 0.00 3.06
3204 5472 3.119245 CCGAACGAAGAAACCCTAGATCA 60.119 47.826 0.00 0.00 0.00 2.92
3205 5473 3.445857 CCGAACGAAGAAACCCTAGATC 58.554 50.000 0.00 0.00 0.00 2.75
3206 5474 2.167900 CCCGAACGAAGAAACCCTAGAT 59.832 50.000 0.00 0.00 0.00 1.98
3207 5475 1.547372 CCCGAACGAAGAAACCCTAGA 59.453 52.381 0.00 0.00 0.00 2.43
3208 5476 2.005560 GCCCGAACGAAGAAACCCTAG 61.006 57.143 0.00 0.00 0.00 3.02
3209 5477 0.037046 GCCCGAACGAAGAAACCCTA 60.037 55.000 0.00 0.00 0.00 3.53
3210 5478 1.302271 GCCCGAACGAAGAAACCCT 60.302 57.895 0.00 0.00 0.00 4.34
3211 5479 0.958876 ATGCCCGAACGAAGAAACCC 60.959 55.000 0.00 0.00 0.00 4.11
3212 5480 0.446616 GATGCCCGAACGAAGAAACC 59.553 55.000 0.00 0.00 0.00 3.27
3213 5481 1.128692 CTGATGCCCGAACGAAGAAAC 59.871 52.381 0.00 0.00 0.00 2.78
3214 5482 1.001520 TCTGATGCCCGAACGAAGAAA 59.998 47.619 0.00 0.00 0.00 2.52
3215 5483 0.606096 TCTGATGCCCGAACGAAGAA 59.394 50.000 0.00 0.00 0.00 2.52
3216 5484 0.824109 ATCTGATGCCCGAACGAAGA 59.176 50.000 0.00 0.00 0.00 2.87
3217 5485 1.202463 AGATCTGATGCCCGAACGAAG 60.202 52.381 0.00 0.00 0.00 3.79
3218 5486 0.824109 AGATCTGATGCCCGAACGAA 59.176 50.000 0.00 0.00 0.00 3.85
3219 5487 0.385751 GAGATCTGATGCCCGAACGA 59.614 55.000 0.00 0.00 0.00 3.85
3220 5488 0.598680 GGAGATCTGATGCCCGAACG 60.599 60.000 0.00 0.00 0.00 3.95
3221 5489 0.250081 GGGAGATCTGATGCCCGAAC 60.250 60.000 0.00 0.00 0.00 3.95
3222 5490 0.399091 AGGGAGATCTGATGCCCGAA 60.399 55.000 15.67 0.00 45.40 4.30
3223 5491 0.399091 AAGGGAGATCTGATGCCCGA 60.399 55.000 15.67 0.00 45.40 5.14
3224 5492 0.034616 GAAGGGAGATCTGATGCCCG 59.965 60.000 15.67 0.00 45.40 6.13
3225 5493 0.399833 GGAAGGGAGATCTGATGCCC 59.600 60.000 14.43 14.43 41.00 5.36
3226 5494 0.399833 GGGAAGGGAGATCTGATGCC 59.600 60.000 0.00 0.00 0.00 4.40
3227 5495 0.399833 GGGGAAGGGAGATCTGATGC 59.600 60.000 0.00 0.00 0.00 3.91
3228 5496 0.683973 CGGGGAAGGGAGATCTGATG 59.316 60.000 0.00 0.00 0.00 3.07
3229 5497 1.124477 GCGGGGAAGGGAGATCTGAT 61.124 60.000 0.00 0.00 0.00 2.90
3230 5498 1.762460 GCGGGGAAGGGAGATCTGA 60.762 63.158 0.00 0.00 0.00 3.27
3231 5499 2.825264 GCGGGGAAGGGAGATCTG 59.175 66.667 0.00 0.00 0.00 2.90
3232 5500 2.840102 CGCGGGGAAGGGAGATCT 60.840 66.667 0.00 0.00 0.00 2.75
3233 5501 2.838225 TCGCGGGGAAGGGAGATC 60.838 66.667 6.13 0.00 0.00 2.75
3246 5514 4.838486 GACAGAGGGACGCTCGCG 62.838 72.222 13.32 10.06 35.27 5.87
3247 5515 2.875684 GAAGACAGAGGGACGCTCGC 62.876 65.000 13.32 7.70 35.27 5.03
3248 5516 1.137825 GAAGACAGAGGGACGCTCG 59.862 63.158 13.32 10.83 35.27 5.03
3249 5517 1.137825 CGAAGACAGAGGGACGCTC 59.862 63.158 11.44 11.44 35.27 5.03
3250 5518 0.681564 ATCGAAGACAGAGGGACGCT 60.682 55.000 0.00 0.00 42.51 5.07
3251 5519 0.248702 GATCGAAGACAGAGGGACGC 60.249 60.000 0.00 0.00 42.51 5.19
3252 5520 0.382515 GGATCGAAGACAGAGGGACG 59.617 60.000 0.00 0.00 42.51 4.79
3253 5521 0.747852 GGGATCGAAGACAGAGGGAC 59.252 60.000 0.00 0.00 42.51 4.46
3254 5522 0.752009 CGGGATCGAAGACAGAGGGA 60.752 60.000 0.00 0.00 42.51 4.20
3255 5523 0.752009 TCGGGATCGAAGACAGAGGG 60.752 60.000 0.00 0.00 42.51 4.30
3256 5524 2.795165 TCGGGATCGAAGACAGAGG 58.205 57.895 0.00 0.00 42.51 3.69
3266 5534 1.913262 TGGATGGGGATCGGGATCG 60.913 63.158 2.80 0.00 38.69 3.69
3267 5535 1.679898 GTGGATGGGGATCGGGATC 59.320 63.158 0.00 0.00 37.11 3.36
3268 5536 1.847968 GGTGGATGGGGATCGGGAT 60.848 63.158 0.00 0.00 0.00 3.85
3269 5537 2.447765 GGTGGATGGGGATCGGGA 60.448 66.667 0.00 0.00 0.00 5.14
3270 5538 3.941188 CGGTGGATGGGGATCGGG 61.941 72.222 0.00 0.00 0.00 5.14
3271 5539 3.941188 CCGGTGGATGGGGATCGG 61.941 72.222 0.00 0.00 0.00 4.18
3272 5540 2.842462 TCCGGTGGATGGGGATCG 60.842 66.667 0.00 0.00 0.00 3.69
3273 5541 2.520536 CCTCCGGTGGATGGGGATC 61.521 68.421 17.99 0.00 0.00 3.36
3274 5542 2.448542 CCTCCGGTGGATGGGGAT 60.449 66.667 17.99 0.00 0.00 3.85
3278 5546 3.406595 GAAGGCCTCCGGTGGATGG 62.407 68.421 26.61 10.77 0.00 3.51
3279 5547 2.190578 GAAGGCCTCCGGTGGATG 59.809 66.667 26.61 0.00 0.00 3.51
3280 5548 2.041265 AGAAGGCCTCCGGTGGAT 59.959 61.111 26.61 10.71 0.00 3.41
3281 5549 3.003173 CAGAAGGCCTCCGGTGGA 61.003 66.667 26.61 0.00 0.00 4.02
3282 5550 4.785453 GCAGAAGGCCTCCGGTGG 62.785 72.222 18.51 18.51 36.11 4.61
3287 5555 4.400961 AGCACGCAGAAGGCCTCC 62.401 66.667 5.23 0.00 40.31 4.30
3288 5556 2.817396 GAGCACGCAGAAGGCCTC 60.817 66.667 5.23 0.00 40.31 4.70
3289 5557 4.400961 GGAGCACGCAGAAGGCCT 62.401 66.667 0.00 0.00 40.31 5.19
3291 5559 2.914777 CTAGGGAGCACGCAGAAGGC 62.915 65.000 0.36 0.00 39.90 4.35
3292 5560 1.142748 CTAGGGAGCACGCAGAAGG 59.857 63.158 0.36 0.00 0.00 3.46
3293 5561 1.142748 CCTAGGGAGCACGCAGAAG 59.857 63.158 0.00 0.00 0.00 2.85
3294 5562 2.359169 CCCTAGGGAGCACGCAGAA 61.359 63.158 24.99 0.00 37.50 3.02
3295 5563 2.759973 CCCTAGGGAGCACGCAGA 60.760 66.667 24.99 0.00 37.50 4.26
3296 5564 4.537433 GCCCTAGGGAGCACGCAG 62.537 72.222 33.21 1.27 37.50 5.18
3307 5575 2.797866 ATTACGATCGCGCGCCCTAG 62.798 60.000 27.95 17.18 42.48 3.02
3308 5576 1.576451 TATTACGATCGCGCGCCCTA 61.576 55.000 27.95 12.12 42.48 3.53
3309 5577 2.911484 TATTACGATCGCGCGCCCT 61.911 57.895 27.95 13.37 42.48 5.19
3310 5578 2.429571 TATTACGATCGCGCGCCC 60.430 61.111 27.95 17.84 42.48 6.13
3311 5579 2.012414 TGTATTACGATCGCGCGCC 61.012 57.895 27.95 18.23 42.48 6.53
3312 5580 1.125266 GTGTATTACGATCGCGCGC 59.875 57.895 27.95 23.91 42.48 6.86
3313 5581 0.841356 TTGTGTATTACGATCGCGCG 59.159 50.000 26.76 26.76 42.48 6.86
3314 5582 3.073022 GATTGTGTATTACGATCGCGC 57.927 47.619 16.60 5.63 39.70 6.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.