Multiple sequence alignment - TraesCS5D01G420000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G420000 chr5D 100.000 2173 0 0 1404 3576 480706844 480704672 0.000000e+00 4013.0
1 TraesCS5D01G420000 chr5D 100.000 1016 0 0 1 1016 480708247 480707232 0.000000e+00 1877.0
2 TraesCS5D01G420000 chr5D 94.667 75 4 0 2495 2569 338409816 338409742 2.260000e-22 117.0
3 TraesCS5D01G420000 chr5D 90.909 77 7 0 11 87 440904731 440904655 1.760000e-18 104.0
4 TraesCS5D01G420000 chr5D 83.019 106 17 1 11 116 440381578 440381682 1.060000e-15 95.3
5 TraesCS5D01G420000 chr5A 95.780 2180 76 8 1404 3576 599804019 599801849 0.000000e+00 3502.0
6 TraesCS5D01G420000 chr5A 92.857 322 20 3 2354 2672 549975052 549975373 6.990000e-127 464.0
7 TraesCS5D01G420000 chr5A 88.493 365 34 6 202 563 599808504 599808145 5.480000e-118 435.0
8 TraesCS5D01G420000 chr5A 80.787 432 42 18 561 971 599804506 599804095 2.090000e-77 300.0
9 TraesCS5D01G420000 chr5B 94.694 2186 99 8 1404 3576 589121566 589119385 0.000000e+00 3378.0
10 TraesCS5D01G420000 chr5B 81.356 118 21 1 11 128 45704617 45704501 1.060000e-15 95.3
11 TraesCS5D01G420000 chr3A 90.748 1697 99 18 1898 3564 19634807 19636475 0.000000e+00 2211.0
12 TraesCS5D01G420000 chr3A 87.500 80 10 0 1453 1532 17272164 17272085 3.800000e-15 93.5
13 TraesCS5D01G420000 chr3A 88.235 68 6 2 11 77 659933601 659933667 2.960000e-11 80.5
14 TraesCS5D01G420000 chr2A 90.283 1698 116 18 1898 3564 659737480 659739159 0.000000e+00 2176.0
15 TraesCS5D01G420000 chr2A 86.350 337 42 2 1451 1787 764330659 764330991 7.300000e-97 364.0
16 TraesCS5D01G420000 chr2A 89.209 278 27 1 1504 1781 683565170 683565444 9.510000e-91 344.0
17 TraesCS5D01G420000 chr2A 86.268 284 31 2 1504 1782 513850434 513850714 5.800000e-78 302.0
18 TraesCS5D01G420000 chr2A 87.879 165 17 1 1618 1782 513849262 513849423 1.310000e-44 191.0
19 TraesCS5D01G420000 chr2A 91.250 80 7 0 1455 1534 16935398 16935477 3.770000e-20 110.0
20 TraesCS5D01G420000 chr2A 80.508 118 22 1 11 128 524136887 524136771 4.920000e-14 89.8
21 TraesCS5D01G420000 chr2A 95.122 41 2 0 1808 1848 16935355 16935395 8.290000e-07 65.8
22 TraesCS5D01G420000 chr1D 91.361 1227 60 17 2369 3564 32535990 32537201 0.000000e+00 1637.0
23 TraesCS5D01G420000 chr6D 94.508 1056 46 5 1898 2945 277050269 277051320 0.000000e+00 1618.0
24 TraesCS5D01G420000 chr6D 92.098 367 29 0 2987 3353 277051328 277051694 5.290000e-143 518.0
25 TraesCS5D01G420000 chr6D 94.565 92 5 0 3350 3441 277053030 277053121 3.720000e-30 143.0
26 TraesCS5D01G420000 chr7D 93.730 319 20 0 2354 2672 521905139 521905457 2.500000e-131 479.0
27 TraesCS5D01G420000 chr7D 91.756 279 20 1 1504 1782 120302480 120302755 5.600000e-103 385.0
28 TraesCS5D01G420000 chr7D 85.357 280 24 7 2710 2981 521905455 521905725 1.260000e-69 274.0
29 TraesCS5D01G420000 chr7D 87.879 198 17 4 1817 2014 8274442 8274632 3.590000e-55 226.0
30 TraesCS5D01G420000 chr6B 92.308 273 21 0 1451 1723 645652298 645652570 4.330000e-104 388.0
31 TraesCS5D01G420000 chr6A 82.079 279 19 16 1504 1782 552206884 552206637 3.620000e-50 209.0
32 TraesCS5D01G420000 chr6A 81.667 120 19 3 10 128 660523 660640 2.940000e-16 97.1
33 TraesCS5D01G420000 chr6A 79.032 124 24 2 12 133 560446182 560446059 2.290000e-12 84.2
34 TraesCS5D01G420000 chr6A 79.032 124 24 2 11 133 560490025 560489903 2.290000e-12 84.2
35 TraesCS5D01G420000 chr7A 91.579 95 8 0 1817 1911 8702133 8702227 8.060000e-27 132.0
36 TraesCS5D01G420000 chr7A 80.165 121 21 3 13 133 167674995 167675112 1.770000e-13 87.9
37 TraesCS5D01G420000 chr4D 90.476 84 8 0 1451 1534 384271439 384271522 1.050000e-20 111.0
38 TraesCS5D01G420000 chr4D 97.727 44 1 0 1807 1850 384271399 384271442 3.830000e-10 76.8
39 TraesCS5D01G420000 chr1A 85.870 92 10 2 1446 1537 543639208 543639120 1.060000e-15 95.3
40 TraesCS5D01G420000 chr7B 100.000 44 0 0 1807 1850 708484663 708484620 8.230000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G420000 chr5D 480704672 480708247 3575 True 2945.000000 4013 100.000000 1 3576 2 chr5D.!!$R3 3575
1 TraesCS5D01G420000 chr5A 599801849 599808504 6655 True 1412.333333 3502 88.353333 202 3576 3 chr5A.!!$R1 3374
2 TraesCS5D01G420000 chr5B 589119385 589121566 2181 True 3378.000000 3378 94.694000 1404 3576 1 chr5B.!!$R2 2172
3 TraesCS5D01G420000 chr3A 19634807 19636475 1668 False 2211.000000 2211 90.748000 1898 3564 1 chr3A.!!$F1 1666
4 TraesCS5D01G420000 chr2A 659737480 659739159 1679 False 2176.000000 2176 90.283000 1898 3564 1 chr2A.!!$F1 1666
5 TraesCS5D01G420000 chr2A 513849262 513850714 1452 False 246.500000 302 87.073500 1504 1782 2 chr2A.!!$F5 278
6 TraesCS5D01G420000 chr1D 32535990 32537201 1211 False 1637.000000 1637 91.361000 2369 3564 1 chr1D.!!$F1 1195
7 TraesCS5D01G420000 chr6D 277050269 277053121 2852 False 759.666667 1618 93.723667 1898 3441 3 chr6D.!!$F1 1543
8 TraesCS5D01G420000 chr7D 521905139 521905725 586 False 376.500000 479 89.543500 2354 2981 2 chr7D.!!$F3 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
883 4564 0.034059 CCGCTCACTCACTCCAAAGT 59.966 55.0 0.0 0.0 35.6 2.66 F
920 4601 0.041238 CTCCTCTCCACCACACCCTA 59.959 60.0 0.0 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2551 6253 0.251354 TCAGAGGCTTCATGGTCTGC 59.749 55.00 0.0 0.0 37.04 4.26 R
2740 6451 5.386958 AACACTAACAGCATAACGAGAGA 57.613 39.13 0.0 0.0 0.00 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.437716 GATCCGCCGGAGCCAAAA 60.438 61.111 10.98 0.00 34.05 2.44
55 56 1.786049 GATCCGCCGGAGCCAAAATC 61.786 60.000 10.98 0.00 34.05 2.17
56 57 3.876198 CCGCCGGAGCCAAAATCG 61.876 66.667 5.05 0.00 34.57 3.34
74 75 3.134127 GCCAGAGCCGGCGAAAAT 61.134 61.111 23.20 1.65 43.52 1.82
75 76 2.700773 GCCAGAGCCGGCGAAAATT 61.701 57.895 23.20 0.68 43.52 1.82
76 77 1.137404 CCAGAGCCGGCGAAAATTG 59.863 57.895 23.20 13.59 0.00 2.32
77 78 1.514873 CAGAGCCGGCGAAAATTGC 60.515 57.895 23.20 0.94 0.00 3.56
78 79 2.576847 GAGCCGGCGAAAATTGCG 60.577 61.111 23.20 0.00 0.00 4.85
79 80 3.322706 GAGCCGGCGAAAATTGCGT 62.323 57.895 23.20 0.00 0.00 5.24
80 81 2.430075 GCCGGCGAAAATTGCGTT 60.430 55.556 12.58 0.00 0.00 4.84
81 82 2.019408 GCCGGCGAAAATTGCGTTT 61.019 52.632 12.58 0.00 0.00 3.60
82 83 1.940404 GCCGGCGAAAATTGCGTTTC 61.940 55.000 12.58 0.00 34.71 2.78
84 85 0.702383 CGGCGAAAATTGCGTTTCTG 59.298 50.000 0.00 2.23 35.70 3.02
85 86 1.059942 GGCGAAAATTGCGTTTCTGG 58.940 50.000 0.00 0.00 35.70 3.86
87 88 1.696988 CGAAAATTGCGTTTCTGGGG 58.303 50.000 5.97 0.00 35.70 4.96
88 89 1.268352 CGAAAATTGCGTTTCTGGGGA 59.732 47.619 5.97 0.00 35.70 4.81
89 90 2.672714 GAAAATTGCGTTTCTGGGGAC 58.327 47.619 1.28 0.00 35.12 4.46
90 91 1.698506 AAATTGCGTTTCTGGGGACA 58.301 45.000 0.00 0.00 39.59 4.02
92 93 1.234615 ATTGCGTTTCTGGGGACACG 61.235 55.000 1.13 1.13 45.13 4.49
93 94 3.047877 GCGTTTCTGGGGACACGG 61.048 66.667 6.79 0.00 43.33 4.94
94 95 2.358247 CGTTTCTGGGGACACGGG 60.358 66.667 0.00 0.00 40.60 5.28
95 96 2.833957 GTTTCTGGGGACACGGGT 59.166 61.111 0.00 0.00 35.60 5.28
97 98 1.766864 TTTCTGGGGACACGGGTGA 60.767 57.895 0.00 0.00 35.60 4.02
99 100 4.394712 CTGGGGACACGGGTGAGC 62.395 72.222 0.00 0.00 35.60 4.26
102 103 3.948719 GGGACACGGGTGAGCCAA 61.949 66.667 0.00 0.00 36.17 4.52
103 104 2.112297 GGACACGGGTGAGCCAAA 59.888 61.111 0.00 0.00 36.17 3.28
104 105 1.303317 GGACACGGGTGAGCCAAAT 60.303 57.895 0.00 0.00 36.17 2.32
106 107 0.958822 GACACGGGTGAGCCAAATTT 59.041 50.000 0.00 0.00 36.17 1.82
107 108 1.339929 GACACGGGTGAGCCAAATTTT 59.660 47.619 0.00 0.00 36.17 1.82
108 109 1.339929 ACACGGGTGAGCCAAATTTTC 59.660 47.619 5.71 0.00 36.17 2.29
109 110 0.596082 ACGGGTGAGCCAAATTTTCG 59.404 50.000 0.08 0.00 36.17 3.46
110 111 0.878416 CGGGTGAGCCAAATTTTCGA 59.122 50.000 0.08 0.00 36.17 3.71
111 112 1.401018 CGGGTGAGCCAAATTTTCGAC 60.401 52.381 0.08 0.00 36.17 4.20
114 115 0.239879 TGAGCCAAATTTTCGACGCC 59.760 50.000 0.00 0.00 0.00 5.68
115 116 0.793104 GAGCCAAATTTTCGACGCCG 60.793 55.000 0.00 0.00 37.07 6.46
116 117 1.208103 GCCAAATTTTCGACGCCGA 59.792 52.632 0.00 0.00 43.96 5.54
117 118 1.063412 GCCAAATTTTCGACGCCGAC 61.063 55.000 0.00 0.00 45.50 4.79
118 119 0.787908 CCAAATTTTCGACGCCGACG 60.788 55.000 1.88 1.88 45.50 5.12
119 120 0.162082 CAAATTTTCGACGCCGACGA 59.838 50.000 7.70 7.70 45.50 4.20
120 121 0.162294 AAATTTTCGACGCCGACGAC 59.838 50.000 11.68 0.00 45.50 4.34
121 122 0.940519 AATTTTCGACGCCGACGACA 60.941 50.000 11.68 1.93 45.50 4.35
122 123 0.940519 ATTTTCGACGCCGACGACAA 60.941 50.000 11.68 11.99 45.50 3.18
123 124 1.144565 TTTTCGACGCCGACGACAAA 61.145 50.000 11.68 11.94 45.50 2.83
124 125 1.144565 TTTCGACGCCGACGACAAAA 61.145 50.000 11.68 0.67 45.50 2.44
125 126 1.144565 TTCGACGCCGACGACAAAAA 61.145 50.000 11.68 0.00 45.50 1.94
141 142 2.260619 AAAAAGGCCTTGAGGGGGA 58.739 52.632 21.33 0.00 35.18 4.81
142 143 0.792960 AAAAAGGCCTTGAGGGGGAT 59.207 50.000 21.33 0.00 35.18 3.85
143 144 0.041684 AAAAGGCCTTGAGGGGGATG 59.958 55.000 21.33 0.00 35.18 3.51
144 145 2.520657 AAAGGCCTTGAGGGGGATGC 62.521 60.000 21.33 0.00 35.18 3.91
145 146 3.424105 GGCCTTGAGGGGGATGCT 61.424 66.667 0.00 0.00 35.18 3.79
146 147 2.194326 GCCTTGAGGGGGATGCTC 59.806 66.667 0.00 0.00 35.18 4.26
147 148 2.381941 GCCTTGAGGGGGATGCTCT 61.382 63.158 0.00 0.00 35.18 4.09
148 149 1.931007 GCCTTGAGGGGGATGCTCTT 61.931 60.000 0.00 0.00 35.18 2.85
151 152 3.251484 CCTTGAGGGGGATGCTCTTATA 58.749 50.000 0.00 0.00 0.00 0.98
152 153 3.848975 CCTTGAGGGGGATGCTCTTATAT 59.151 47.826 0.00 0.00 0.00 0.86
153 154 4.290722 CCTTGAGGGGGATGCTCTTATATT 59.709 45.833 0.00 0.00 0.00 1.28
154 155 5.222213 CCTTGAGGGGGATGCTCTTATATTT 60.222 44.000 0.00 0.00 0.00 1.40
155 156 5.930209 TGAGGGGGATGCTCTTATATTTT 57.070 39.130 0.00 0.00 0.00 1.82
156 157 5.634118 TGAGGGGGATGCTCTTATATTTTG 58.366 41.667 0.00 0.00 0.00 2.44
157 158 4.411013 AGGGGGATGCTCTTATATTTTGC 58.589 43.478 0.00 0.00 0.00 3.68
158 159 4.140947 AGGGGGATGCTCTTATATTTTGCA 60.141 41.667 0.00 0.00 38.05 4.08
159 160 4.021981 GGGGGATGCTCTTATATTTTGCAC 60.022 45.833 0.00 0.00 36.44 4.57
160 161 4.829492 GGGGATGCTCTTATATTTTGCACT 59.171 41.667 0.00 0.00 36.44 4.40
161 162 6.003950 GGGGATGCTCTTATATTTTGCACTA 58.996 40.000 0.00 0.00 36.44 2.74
163 164 6.150140 GGGATGCTCTTATATTTTGCACTAGG 59.850 42.308 0.00 0.00 36.44 3.02
164 165 6.936900 GGATGCTCTTATATTTTGCACTAGGA 59.063 38.462 0.00 0.00 36.44 2.94
166 167 9.658799 GATGCTCTTATATTTTGCACTAGGATA 57.341 33.333 0.00 0.00 36.44 2.59
168 169 9.273016 TGCTCTTATATTTTGCACTAGGATAAC 57.727 33.333 0.00 0.00 0.00 1.89
169 170 9.273016 GCTCTTATATTTTGCACTAGGATAACA 57.727 33.333 0.00 0.00 0.00 2.41
200 201 5.438761 AAAAAGTTGTCACTATGTCCAGC 57.561 39.130 0.00 0.00 30.68 4.85
204 205 0.530744 TGTCACTATGTCCAGCCGAC 59.469 55.000 0.00 0.00 42.33 4.79
223 224 4.378459 CCGACAAGCATCTAAACTTGGAAC 60.378 45.833 7.57 0.00 46.03 3.62
226 227 5.376625 ACAAGCATCTAAACTTGGAACTGA 58.623 37.500 7.57 0.00 46.03 3.41
230 231 5.003804 GCATCTAAACTTGGAACTGAGGAA 58.996 41.667 0.00 0.00 0.00 3.36
231 232 5.106515 GCATCTAAACTTGGAACTGAGGAAC 60.107 44.000 0.00 0.00 0.00 3.62
251 252 4.579454 ACTTTGTGTAGCTGAACGAGTA 57.421 40.909 0.00 0.00 0.00 2.59
253 254 5.539048 ACTTTGTGTAGCTGAACGAGTAAT 58.461 37.500 0.00 0.00 0.00 1.89
254 255 6.684686 ACTTTGTGTAGCTGAACGAGTAATA 58.315 36.000 0.00 0.00 0.00 0.98
287 288 9.762933 TTGCTTCTCAAAACTAGCAATAAAAAT 57.237 25.926 0.00 0.00 45.63 1.82
313 314 2.622942 TCATCTGTTGCAACCTTCAACC 59.377 45.455 26.14 0.00 42.17 3.77
334 335 6.620877 ACCATGAAATCCAGTCTGTAGTAA 57.379 37.500 0.00 0.00 0.00 2.24
345 346 5.352569 CCAGTCTGTAGTAAGAAGCCAAATG 59.647 44.000 0.00 0.00 0.00 2.32
351 352 4.708726 AGTAAGAAGCCAAATGCACATC 57.291 40.909 0.00 0.00 44.83 3.06
354 355 1.203994 AGAAGCCAAATGCACATCTGC 59.796 47.619 0.00 0.00 44.83 4.26
419 420 1.002624 GGGCCGTGACCATTCTGAA 60.003 57.895 0.00 0.00 0.00 3.02
421 422 1.463674 GGCCGTGACCATTCTGAATT 58.536 50.000 0.00 0.00 0.00 2.17
428 429 2.749076 TGACCATTCTGAATTCAAGCCG 59.251 45.455 9.88 0.00 0.00 5.52
470 471 9.387123 CTCAACAGTATTTAGTTTCAAAAGAGC 57.613 33.333 0.00 0.00 0.00 4.09
480 481 1.609208 TCAAAAGAGCAGCTGGGAAC 58.391 50.000 17.12 0.00 0.00 3.62
498 510 6.397272 TGGGAACAATATGCTTCAAATGTTC 58.603 36.000 7.68 7.68 43.51 3.18
502 514 8.483307 GAACAATATGCTTCAAATGTTCCATT 57.517 30.769 5.40 0.00 40.25 3.16
503 515 8.851541 AACAATATGCTTCAAATGTTCCATTT 57.148 26.923 0.00 0.00 0.00 2.32
504 516 8.851541 ACAATATGCTTCAAATGTTCCATTTT 57.148 26.923 0.00 0.00 0.00 1.82
505 517 9.287373 ACAATATGCTTCAAATGTTCCATTTTT 57.713 25.926 0.00 0.00 0.00 1.94
554 566 4.382793 GCACCTCTACGAATTTTCCTAGGT 60.383 45.833 9.08 0.00 0.00 3.08
593 4246 0.957395 AAGTTCCGTGATGCAGCAGG 60.957 55.000 17.29 17.29 0.00 4.85
595 4248 1.078918 TTCCGTGATGCAGCAGGAG 60.079 57.895 24.96 14.95 32.03 3.69
623 4280 2.437180 TGATGCAGCAGGGAAGCG 60.437 61.111 0.00 0.00 40.15 4.68
624 4281 3.885521 GATGCAGCAGGGAAGCGC 61.886 66.667 0.00 0.00 40.15 5.92
643 4300 2.048503 GGGACGTCAACTCCGGTG 60.049 66.667 18.91 0.00 0.00 4.94
644 4301 2.567497 GGGACGTCAACTCCGGTGA 61.567 63.158 18.91 0.00 0.00 4.02
645 4302 1.590147 GGACGTCAACTCCGGTGAT 59.410 57.895 18.91 0.00 0.00 3.06
659 4316 2.772739 GTGATCTGCACGCCATTCT 58.227 52.632 0.00 0.00 37.83 2.40
717 4374 0.251121 TTTGGTGATCCGCCACACAT 60.251 50.000 5.70 0.00 44.22 3.21
720 4377 1.151777 GGTGATCCGCCACACATACG 61.152 60.000 0.00 0.00 38.74 3.06
722 4379 1.520564 GATCCGCCACACATACGCA 60.521 57.895 0.00 0.00 0.00 5.24
724 4381 2.514510 ATCCGCCACACATACGCACA 62.515 55.000 0.00 0.00 0.00 4.57
725 4382 2.474266 CGCCACACATACGCACAC 59.526 61.111 0.00 0.00 0.00 3.82
726 4383 2.313909 CGCCACACATACGCACACA 61.314 57.895 0.00 0.00 0.00 3.72
727 4384 1.497278 GCCACACATACGCACACAG 59.503 57.895 0.00 0.00 0.00 3.66
743 4400 5.053145 GCACACAGAAAGAAAGAGAGAGAA 58.947 41.667 0.00 0.00 0.00 2.87
745 4402 6.037610 GCACACAGAAAGAAAGAGAGAGAAAA 59.962 38.462 0.00 0.00 0.00 2.29
769 4429 5.729974 AAAAGTCGTCACTCTAACAAACC 57.270 39.130 0.00 0.00 29.93 3.27
775 4435 1.068474 CACTCTAACAAACCGGCTCG 58.932 55.000 0.00 0.00 0.00 5.03
828 4488 2.487532 CGTACCTGACCTAGCCCGG 61.488 68.421 0.00 0.00 0.00 5.73
830 4490 3.305619 TACCTGACCTAGCCCGGCA 62.306 63.158 13.15 0.00 0.00 5.69
831 4491 4.162690 CCTGACCTAGCCCGGCAC 62.163 72.222 13.15 0.00 0.00 5.01
878 4559 4.803426 CCGCCGCTCACTCACTCC 62.803 72.222 0.00 0.00 0.00 3.85
879 4560 4.056125 CGCCGCTCACTCACTCCA 62.056 66.667 0.00 0.00 0.00 3.86
880 4561 2.343758 GCCGCTCACTCACTCCAA 59.656 61.111 0.00 0.00 0.00 3.53
882 4563 1.294659 GCCGCTCACTCACTCCAAAG 61.295 60.000 0.00 0.00 0.00 2.77
883 4564 0.034059 CCGCTCACTCACTCCAAAGT 59.966 55.000 0.00 0.00 35.60 2.66
884 4565 1.272490 CCGCTCACTCACTCCAAAGTA 59.728 52.381 0.00 0.00 33.25 2.24
886 4567 2.731976 CGCTCACTCACTCCAAAGTAAC 59.268 50.000 0.00 0.00 33.25 2.50
888 4569 3.665190 CTCACTCACTCCAAAGTAACCC 58.335 50.000 0.00 0.00 33.25 4.11
889 4570 2.370849 TCACTCACTCCAAAGTAACCCC 59.629 50.000 0.00 0.00 33.25 4.95
890 4571 1.703513 ACTCACTCCAAAGTAACCCCC 59.296 52.381 0.00 0.00 33.25 5.40
905 4586 3.039526 CCCCTCCCCTCCTCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
907 4588 2.018086 CCCTCCCCTCCTCTCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
909 4590 1.541672 CTCCCCTCCTCTCCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
910 4591 1.230650 TCCCCTCCTCTCCTCTCCA 60.231 63.158 0.00 0.00 0.00 3.86
919 4600 1.229336 CTCCTCTCCACCACACCCT 60.229 63.158 0.00 0.00 0.00 4.34
920 4601 0.041238 CTCCTCTCCACCACACCCTA 59.959 60.000 0.00 0.00 0.00 3.53
971 4652 2.764547 GCTAACCCCGCTCCTCCT 60.765 66.667 0.00 0.00 0.00 3.69
973 4654 2.042230 TAACCCCGCTCCTCCTCC 60.042 66.667 0.00 0.00 0.00 4.30
974 4655 2.591193 CTAACCCCGCTCCTCCTCCT 62.591 65.000 0.00 0.00 0.00 3.69
975 4656 2.584873 TAACCCCGCTCCTCCTCCTC 62.585 65.000 0.00 0.00 0.00 3.71
977 4658 4.150454 CCCGCTCCTCCTCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
978 4659 2.520741 CCGCTCCTCCTCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
980 4661 3.024217 GCTCCTCCTCCTCCTCCT 58.976 66.667 0.00 0.00 0.00 3.69
981 4662 1.152546 GCTCCTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
982 4663 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
983 4664 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
984 4665 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
985 4666 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
986 4667 2.015726 TCCTCCTCCTCCTCCTCCC 61.016 68.421 0.00 0.00 0.00 4.30
987 4668 2.612251 CTCCTCCTCCTCCTCCCC 59.388 72.222 0.00 0.00 0.00 4.81
988 4669 3.430497 TCCTCCTCCTCCTCCCCG 61.430 72.222 0.00 0.00 0.00 5.73
989 4670 3.430497 CCTCCTCCTCCTCCCCGA 61.430 72.222 0.00 0.00 0.00 5.14
990 4671 2.784654 CCTCCTCCTCCTCCCCGAT 61.785 68.421 0.00 0.00 0.00 4.18
991 4672 1.228737 CTCCTCCTCCTCCCCGATC 60.229 68.421 0.00 0.00 0.00 3.69
992 4673 2.203714 CCTCCTCCTCCCCGATCC 60.204 72.222 0.00 0.00 0.00 3.36
993 4674 2.609339 CTCCTCCTCCCCGATCCA 59.391 66.667 0.00 0.00 0.00 3.41
1429 5110 4.755507 ACCCTCCCGGTCGACCTC 62.756 72.222 30.92 7.40 43.58 3.85
1579 5260 3.834799 GGCTACGACCCGTCCCTG 61.835 72.222 0.00 0.00 41.54 4.45
1601 5282 2.882876 GCGGCGTCTCCTACAAGA 59.117 61.111 9.37 0.00 0.00 3.02
1954 5640 2.398498 CGCATCCAGATTTACTCCTCG 58.602 52.381 0.00 0.00 0.00 4.63
1957 5643 0.102481 TCCAGATTTACTCCTCGCGC 59.898 55.000 0.00 0.00 0.00 6.86
2017 5703 2.671070 CAGTCCAGGCCGTTCCAT 59.329 61.111 0.00 0.00 37.29 3.41
2551 6253 2.775911 TGGATTTGTCCTCTCTGCTG 57.224 50.000 0.00 0.00 0.00 4.41
2737 6448 7.494625 CACTCCTAAGTTTGTTAAGTCTTGTCA 59.505 37.037 0.00 0.00 31.71 3.58
2740 6451 9.403583 TCCTAAGTTTGTTAAGTCTTGTCATTT 57.596 29.630 0.00 0.00 0.00 2.32
2741 6452 9.665264 CCTAAGTTTGTTAAGTCTTGTCATTTC 57.335 33.333 0.00 0.00 0.00 2.17
2831 6552 7.335924 TGGTTCATTATGTACTTTAGCCAGTTC 59.664 37.037 2.25 0.00 0.00 3.01
3078 6844 5.871524 TGATTGTATTCTCACTGCTGAACTC 59.128 40.000 0.00 0.00 0.00 3.01
3079 6845 4.871933 TGTATTCTCACTGCTGAACTCA 57.128 40.909 0.00 0.00 0.00 3.41
3110 6876 6.261158 TCTGACAAATCGTGTTTTTCATGGTA 59.739 34.615 0.00 0.00 41.96 3.25
3162 6930 7.864379 ACTGATCATTAGAGTTTTGCACAAAAG 59.136 33.333 8.73 0.00 40.53 2.27
3169 6937 6.225981 AGAGTTTTGCACAAAAGAATTCCT 57.774 33.333 8.73 2.08 40.53 3.36
3202 6970 8.351495 TCAGTTGAAGTTATTGTTGAAATTGC 57.649 30.769 0.00 0.00 0.00 3.56
3233 7001 0.034186 TGCATGCAGAAACTAGGGGG 60.034 55.000 18.46 0.00 0.00 5.40
3246 7014 6.827251 AGAAACTAGGGGGAACGATTAAATTC 59.173 38.462 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.987954 TTTTGGCTCCGGCGGATCC 62.988 63.158 35.47 35.47 38.39 3.36
36 37 1.786049 GATTTTGGCTCCGGCGGATC 61.786 60.000 31.23 25.77 39.81 3.36
37 38 1.823899 GATTTTGGCTCCGGCGGAT 60.824 57.895 31.23 13.10 39.81 4.18
38 39 2.437716 GATTTTGGCTCCGGCGGA 60.438 61.111 29.14 29.14 39.81 5.54
39 40 3.876198 CGATTTTGGCTCCGGCGG 61.876 66.667 22.51 22.51 39.81 6.13
59 60 1.514873 GCAATTTTCGCCGGCTCTG 60.515 57.895 26.68 9.50 0.00 3.35
60 61 2.877691 GCAATTTTCGCCGGCTCT 59.122 55.556 26.68 0.56 0.00 4.09
61 62 2.576847 CGCAATTTTCGCCGGCTC 60.577 61.111 26.68 0.00 0.00 4.70
63 64 1.940404 GAAACGCAATTTTCGCCGGC 61.940 55.000 19.07 19.07 0.00 6.13
65 66 0.702383 CAGAAACGCAATTTTCGCCG 59.298 50.000 0.00 0.00 39.96 6.46
66 67 1.059942 CCAGAAACGCAATTTTCGCC 58.940 50.000 0.00 0.00 39.96 5.54
68 69 1.268352 TCCCCAGAAACGCAATTTTCG 59.732 47.619 0.00 0.00 39.96 3.46
70 71 2.035632 TGTCCCCAGAAACGCAATTTT 58.964 42.857 0.00 0.00 0.00 1.82
71 72 1.339929 GTGTCCCCAGAAACGCAATTT 59.660 47.619 0.00 0.00 0.00 1.82
72 73 0.958822 GTGTCCCCAGAAACGCAATT 59.041 50.000 0.00 0.00 0.00 2.32
73 74 1.234615 CGTGTCCCCAGAAACGCAAT 61.235 55.000 0.00 0.00 46.19 3.56
74 75 1.890041 CGTGTCCCCAGAAACGCAA 60.890 57.895 0.00 0.00 46.19 4.85
75 76 2.280524 CGTGTCCCCAGAAACGCA 60.281 61.111 0.00 0.00 46.19 5.24
78 79 1.599797 CACCCGTGTCCCCAGAAAC 60.600 63.158 0.00 0.00 0.00 2.78
79 80 1.764571 CTCACCCGTGTCCCCAGAAA 61.765 60.000 0.00 0.00 0.00 2.52
80 81 2.122769 TCACCCGTGTCCCCAGAA 60.123 61.111 0.00 0.00 0.00 3.02
81 82 2.603473 CTCACCCGTGTCCCCAGA 60.603 66.667 0.00 0.00 0.00 3.86
82 83 4.394712 GCTCACCCGTGTCCCCAG 62.395 72.222 0.00 0.00 0.00 4.45
85 86 2.764637 ATTTGGCTCACCCGTGTCCC 62.765 60.000 0.00 0.00 35.87 4.46
87 88 0.958822 AAATTTGGCTCACCCGTGTC 59.041 50.000 0.00 0.00 35.87 3.67
88 89 1.339929 GAAAATTTGGCTCACCCGTGT 59.660 47.619 0.00 0.00 35.87 4.49
89 90 1.665735 CGAAAATTTGGCTCACCCGTG 60.666 52.381 0.00 0.00 35.87 4.94
90 91 0.596082 CGAAAATTTGGCTCACCCGT 59.404 50.000 0.00 0.00 35.87 5.28
92 93 1.401018 CGTCGAAAATTTGGCTCACCC 60.401 52.381 0.00 0.00 33.59 4.61
93 94 1.963747 CGTCGAAAATTTGGCTCACC 58.036 50.000 0.00 0.00 0.00 4.02
94 95 1.327507 GCGTCGAAAATTTGGCTCAC 58.672 50.000 0.00 0.00 0.00 3.51
95 96 0.239879 GGCGTCGAAAATTTGGCTCA 59.760 50.000 0.00 0.00 0.00 4.26
97 98 1.209127 CGGCGTCGAAAATTTGGCT 59.791 52.632 1.44 0.00 39.00 4.75
107 108 1.588403 TTTTTGTCGTCGGCGTCGA 60.588 52.632 23.93 23.93 43.86 4.20
108 109 2.922360 TTTTTGTCGTCGGCGTCG 59.078 55.556 19.85 19.85 39.49 5.12
123 124 0.792960 ATCCCCCTCAAGGCCTTTTT 59.207 50.000 17.61 0.00 0.00 1.94
124 125 0.041684 CATCCCCCTCAAGGCCTTTT 59.958 55.000 17.61 0.00 0.00 2.27
125 126 1.699752 CATCCCCCTCAAGGCCTTT 59.300 57.895 17.61 0.00 0.00 3.11
126 127 3.001358 GCATCCCCCTCAAGGCCTT 62.001 63.158 13.78 13.78 0.00 4.35
127 128 3.424105 GCATCCCCCTCAAGGCCT 61.424 66.667 0.00 0.00 0.00 5.19
128 129 3.424105 AGCATCCCCCTCAAGGCC 61.424 66.667 0.00 0.00 0.00 5.19
132 133 5.930209 AAATATAAGAGCATCCCCCTCAA 57.070 39.130 0.00 0.00 33.66 3.02
133 134 5.634118 CAAAATATAAGAGCATCCCCCTCA 58.366 41.667 0.00 0.00 33.66 3.86
134 135 4.460731 GCAAAATATAAGAGCATCCCCCTC 59.539 45.833 0.00 0.00 33.66 4.30
135 136 4.140947 TGCAAAATATAAGAGCATCCCCCT 60.141 41.667 0.00 0.00 33.66 4.79
136 137 4.021981 GTGCAAAATATAAGAGCATCCCCC 60.022 45.833 0.00 0.00 37.56 5.40
137 138 4.829492 AGTGCAAAATATAAGAGCATCCCC 59.171 41.667 0.00 0.00 37.56 4.81
138 139 6.150140 CCTAGTGCAAAATATAAGAGCATCCC 59.850 42.308 0.00 0.00 37.56 3.85
139 140 6.936900 TCCTAGTGCAAAATATAAGAGCATCC 59.063 38.462 0.00 0.00 37.56 3.51
142 143 9.273016 GTTATCCTAGTGCAAAATATAAGAGCA 57.727 33.333 0.00 0.00 0.00 4.26
143 144 9.273016 TGTTATCCTAGTGCAAAATATAAGAGC 57.727 33.333 0.00 0.00 0.00 4.09
178 179 4.278419 GGCTGGACATAGTGACAACTTTTT 59.722 41.667 0.00 0.00 37.88 1.94
179 180 3.821033 GGCTGGACATAGTGACAACTTTT 59.179 43.478 0.00 0.00 37.88 2.27
180 181 3.412386 GGCTGGACATAGTGACAACTTT 58.588 45.455 0.00 0.00 37.88 2.66
181 182 2.612972 CGGCTGGACATAGTGACAACTT 60.613 50.000 0.00 0.00 37.88 2.66
182 183 1.066858 CGGCTGGACATAGTGACAACT 60.067 52.381 0.00 0.00 40.67 3.16
183 184 1.067142 TCGGCTGGACATAGTGACAAC 60.067 52.381 0.00 0.00 0.00 3.32
184 185 1.067142 GTCGGCTGGACATAGTGACAA 60.067 52.381 0.00 0.00 45.36 3.18
185 186 0.530744 GTCGGCTGGACATAGTGACA 59.469 55.000 0.00 0.00 45.36 3.58
186 187 3.347411 GTCGGCTGGACATAGTGAC 57.653 57.895 0.00 0.00 45.36 3.67
195 196 0.901827 TTAGATGCTTGTCGGCTGGA 59.098 50.000 0.00 0.00 0.00 3.86
196 197 1.398390 GTTTAGATGCTTGTCGGCTGG 59.602 52.381 0.00 0.00 0.00 4.85
197 198 2.350522 AGTTTAGATGCTTGTCGGCTG 58.649 47.619 0.00 0.00 0.00 4.85
199 200 2.159517 CCAAGTTTAGATGCTTGTCGGC 60.160 50.000 0.00 0.00 40.13 5.54
200 201 3.334691 TCCAAGTTTAGATGCTTGTCGG 58.665 45.455 0.00 0.00 40.13 4.79
204 205 5.106396 CCTCAGTTCCAAGTTTAGATGCTTG 60.106 44.000 0.00 0.00 41.08 4.01
223 224 3.995199 TCAGCTACACAAAGTTCCTCAG 58.005 45.455 0.00 0.00 0.00 3.35
226 227 3.131396 CGTTCAGCTACACAAAGTTCCT 58.869 45.455 0.00 0.00 0.00 3.36
230 231 3.454371 ACTCGTTCAGCTACACAAAGT 57.546 42.857 0.00 0.00 0.00 2.66
231 232 7.576750 TTATTACTCGTTCAGCTACACAAAG 57.423 36.000 0.00 0.00 0.00 2.77
232 233 7.949903 TTTATTACTCGTTCAGCTACACAAA 57.050 32.000 0.00 0.00 0.00 2.83
253 254 9.448438 TGCTAGTTTTGAGAAGCAAGATATTTA 57.552 29.630 0.00 0.00 41.74 1.40
254 255 8.340618 TGCTAGTTTTGAGAAGCAAGATATTT 57.659 30.769 0.00 0.00 41.74 1.40
287 288 6.647334 TGAAGGTTGCAACAGATGAATTTA 57.353 33.333 29.55 7.47 0.00 1.40
292 293 2.622942 GGTTGAAGGTTGCAACAGATGA 59.377 45.455 29.55 10.57 45.58 2.92
301 302 3.006752 TGGATTTCATGGTTGAAGGTTGC 59.993 43.478 0.00 0.00 42.60 4.17
313 314 7.010923 GCTTCTTACTACAGACTGGATTTCATG 59.989 40.741 7.51 0.00 0.00 3.07
351 352 2.000447 GTAAGGCCGAGTACTTTGCAG 59.000 52.381 16.47 0.00 0.00 4.41
379 380 5.114081 CCTTTCATGGCTGGATGAAAATTC 58.886 41.667 15.29 0.00 46.61 2.17
385 386 0.396139 GCCCTTTCATGGCTGGATGA 60.396 55.000 0.00 0.00 45.70 2.92
419 420 2.185004 AGCACTTGTACGGCTTGAAT 57.815 45.000 0.00 0.00 33.21 2.57
421 422 3.698250 AAGCACTTGTACGGCTTGA 57.302 47.368 11.50 0.00 45.44 3.02
470 471 3.018856 TGAAGCATATTGTTCCCAGCTG 58.981 45.455 6.78 6.78 31.88 4.24
522 534 6.527057 AATTCGTAGAGGTGCTAGTACTTT 57.473 37.500 10.95 0.00 38.43 2.66
532 544 5.340439 ACCTAGGAAAATTCGTAGAGGTG 57.660 43.478 17.98 8.86 44.32 4.00
554 566 3.033659 TGGGCCAGAAAGTAACCAAAA 57.966 42.857 0.00 0.00 0.00 2.44
593 4246 3.095347 GCATCACGGACCCCTCCTC 62.095 68.421 0.00 0.00 33.79 3.71
595 4248 3.391665 CTGCATCACGGACCCCTCC 62.392 68.421 0.00 0.00 0.00 4.30
634 4291 1.079819 CGTGCAGATCACCGGAGTT 60.080 57.895 9.46 0.00 42.69 3.01
635 4292 2.573869 CGTGCAGATCACCGGAGT 59.426 61.111 9.46 0.00 42.69 3.85
636 4293 2.887568 GCGTGCAGATCACCGGAG 60.888 66.667 9.46 0.00 42.69 4.63
637 4294 4.451150 GGCGTGCAGATCACCGGA 62.451 66.667 9.46 0.00 42.69 5.14
638 4295 4.758251 TGGCGTGCAGATCACCGG 62.758 66.667 0.00 0.00 42.69 5.28
639 4296 2.040213 GAATGGCGTGCAGATCACCG 62.040 60.000 0.00 0.00 42.69 4.94
640 4297 0.745845 AGAATGGCGTGCAGATCACC 60.746 55.000 0.00 0.00 42.69 4.02
641 4298 1.089920 AAGAATGGCGTGCAGATCAC 58.910 50.000 0.00 0.00 42.23 3.06
642 4299 1.469703 CAAAGAATGGCGTGCAGATCA 59.530 47.619 0.00 0.00 0.00 2.92
643 4300 1.470098 ACAAAGAATGGCGTGCAGATC 59.530 47.619 0.00 0.00 0.00 2.75
644 4301 1.470098 GACAAAGAATGGCGTGCAGAT 59.530 47.619 0.00 0.00 0.00 2.90
645 4302 0.874390 GACAAAGAATGGCGTGCAGA 59.126 50.000 0.00 0.00 0.00 4.26
687 4344 1.464997 GATCACCAAAGCGAACTGACC 59.535 52.381 0.00 0.00 0.00 4.02
693 4350 2.038269 GGCGGATCACCAAAGCGAA 61.038 57.895 0.00 0.00 35.59 4.70
699 4356 0.615850 TATGTGTGGCGGATCACCAA 59.384 50.000 8.19 0.00 39.39 3.67
717 4374 4.037565 TCTCTCTTTCTTTCTGTGTGCGTA 59.962 41.667 0.00 0.00 0.00 4.42
720 4377 4.626042 TCTCTCTCTTTCTTTCTGTGTGC 58.374 43.478 0.00 0.00 0.00 4.57
798 4458 1.529010 AGGTACGTCACGTCACCCA 60.529 57.895 5.85 0.00 41.54 4.51
831 4491 3.762247 TTTAGGGCCGTCCGTCCG 61.762 66.667 0.00 0.00 41.52 4.79
832 4492 2.125391 GTTTAGGGCCGTCCGTCC 60.125 66.667 0.00 0.00 41.52 4.79
833 4493 0.532115 TAAGTTTAGGGCCGTCCGTC 59.468 55.000 0.00 0.00 41.52 4.79
888 4569 3.039526 AGGAGAGGAGGGGAGGGG 61.040 72.222 0.00 0.00 0.00 4.79
889 4570 2.018086 AGAGGAGAGGAGGGGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
890 4571 1.541672 GAGAGGAGAGGAGGGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
891 4572 1.292941 TGGAGAGGAGAGGAGGGGAG 61.293 65.000 0.00 0.00 0.00 4.30
892 4573 1.230650 TGGAGAGGAGAGGAGGGGA 60.231 63.158 0.00 0.00 0.00 4.81
893 4574 1.075600 GTGGAGAGGAGAGGAGGGG 60.076 68.421 0.00 0.00 0.00 4.79
894 4575 1.075600 GGTGGAGAGGAGAGGAGGG 60.076 68.421 0.00 0.00 0.00 4.30
895 4576 0.686112 GTGGTGGAGAGGAGAGGAGG 60.686 65.000 0.00 0.00 0.00 4.30
896 4577 0.040351 TGTGGTGGAGAGGAGAGGAG 59.960 60.000 0.00 0.00 0.00 3.69
897 4578 0.251832 GTGTGGTGGAGAGGAGAGGA 60.252 60.000 0.00 0.00 0.00 3.71
900 4581 1.229209 GGGTGTGGTGGAGAGGAGA 60.229 63.158 0.00 0.00 0.00 3.71
905 4586 2.409064 TTCTTAGGGTGTGGTGGAGA 57.591 50.000 0.00 0.00 0.00 3.71
907 4588 3.955524 TTTTTCTTAGGGTGTGGTGGA 57.044 42.857 0.00 0.00 0.00 4.02
932 4613 3.425359 CGCAGTGAGTGAATGAATTGACC 60.425 47.826 0.00 0.00 0.00 4.02
971 4652 3.430497 CGGGGAGGAGGAGGAGGA 61.430 72.222 0.00 0.00 0.00 3.71
973 4654 1.228737 GATCGGGGAGGAGGAGGAG 60.229 68.421 0.00 0.00 0.00 3.69
974 4655 2.780185 GGATCGGGGAGGAGGAGGA 61.780 68.421 0.00 0.00 0.00 3.71
975 4656 2.203714 GGATCGGGGAGGAGGAGG 60.204 72.222 0.00 0.00 0.00 4.30
977 4658 2.282446 GTGGATCGGGGAGGAGGA 59.718 66.667 0.00 0.00 0.00 3.71
978 4659 2.844839 GGTGGATCGGGGAGGAGG 60.845 72.222 0.00 0.00 0.00 4.30
980 4661 4.492303 GGGGTGGATCGGGGAGGA 62.492 72.222 0.00 0.00 0.00 3.71
1601 5282 4.194720 GGCGTCGCTGTCCTCGAT 62.195 66.667 18.11 0.00 38.29 3.59
2017 5703 1.305623 GACGAGGGGGTAGGAGTCA 59.694 63.158 0.00 0.00 0.00 3.41
2551 6253 0.251354 TCAGAGGCTTCATGGTCTGC 59.749 55.000 0.00 0.00 37.04 4.26
2582 6284 6.530019 ACATTCCCAAAACTGATCCATAAC 57.470 37.500 0.00 0.00 0.00 1.89
2617 6319 5.456822 GCAAACAAAGCAGTAGAACAAGAAG 59.543 40.000 0.00 0.00 0.00 2.85
2737 6448 6.398918 ACACTAACAGCATAACGAGAGAAAT 58.601 36.000 0.00 0.00 0.00 2.17
2740 6451 5.386958 AACACTAACAGCATAACGAGAGA 57.613 39.130 0.00 0.00 0.00 3.10
2741 6452 5.668866 GCAAACACTAACAGCATAACGAGAG 60.669 44.000 0.00 0.00 0.00 3.20
2831 6552 8.490355 GCAAACAGATTTTATTTCACCTTTGAG 58.510 33.333 0.00 0.00 31.71 3.02
3061 6827 3.758755 TGTGAGTTCAGCAGTGAGAAT 57.241 42.857 0.00 0.00 32.98 2.40
3078 6844 2.807967 ACACGATTTGTCAGACCATGTG 59.192 45.455 0.00 2.94 29.79 3.21
3079 6845 3.126001 ACACGATTTGTCAGACCATGT 57.874 42.857 0.00 0.00 29.79 3.21
3147 6915 5.812127 ACAGGAATTCTTTTGTGCAAAACTC 59.188 36.000 5.23 2.26 35.57 3.01
3202 6970 3.654178 GCATGCAGCAGGTAAATGG 57.346 52.632 14.21 0.00 44.79 3.16
3246 7014 6.748333 ATGTCACAGAAATATCACAACTGG 57.252 37.500 0.00 0.00 33.57 4.00
3357 8466 8.045176 AGTAAATGGTTCTCAAGAAATAGTGC 57.955 34.615 0.00 0.00 35.58 4.40
3500 8617 9.613428 TCATATCATGTAAGTTTCTCCGAAAAT 57.387 29.630 0.00 0.00 0.00 1.82
3520 8637 4.270566 CAGTGCACTTGAAGAGCTCATATC 59.729 45.833 18.94 11.54 32.86 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.