Multiple sequence alignment - TraesCS5D01G419900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G419900 chr5D 100.000 3818 0 0 1 3818 480698664 480702481 0.000000e+00 7051.0
1 TraesCS5D01G419900 chr5D 98.346 1270 21 0 1352 2621 511472531 511473800 0.000000e+00 2230.0
2 TraesCS5D01G419900 chr5D 98.694 919 12 0 1703 2621 55036280 55035362 0.000000e+00 1631.0
3 TraesCS5D01G419900 chr5D 83.744 406 44 14 3416 3818 404496516 404496130 7.790000e-97 364.0
4 TraesCS5D01G419900 chr5D 88.593 263 19 9 1380 1642 404502166 404501915 3.700000e-80 309.0
5 TraesCS5D01G419900 chr7D 98.583 1270 17 1 1352 2621 620849483 620850751 0.000000e+00 2244.0
6 TraesCS5D01G419900 chrUn 99.238 919 7 0 1703 2621 237413451 237414369 0.000000e+00 1659.0
7 TraesCS5D01G419900 chrUn 99.238 919 7 0 1703 2621 259941042 259941960 0.000000e+00 1659.0
8 TraesCS5D01G419900 chr6D 99.238 919 7 0 1703 2621 420439017 420438099 0.000000e+00 1659.0
9 TraesCS5D01G419900 chr6D 98.168 273 4 1 1352 1624 22486289 22486560 3.450000e-130 475.0
10 TraesCS5D01G419900 chr1D 99.238 919 7 0 1703 2621 59641772 59642690 0.000000e+00 1659.0
11 TraesCS5D01G419900 chr1D 98.855 262 3 0 1363 1624 31007882 31007621 5.780000e-128 468.0
12 TraesCS5D01G419900 chr3D 98.912 919 10 0 1703 2621 535568609 535569527 0.000000e+00 1642.0
13 TraesCS5D01G419900 chr3D 99.618 262 1 0 1363 1624 26968024 26967763 2.670000e-131 479.0
14 TraesCS5D01G419900 chr3D 72.775 191 50 2 420 609 82124781 82124592 3.180000e-06 63.9
15 TraesCS5D01G419900 chr4D 98.909 917 10 0 1703 2619 210474478 210473562 0.000000e+00 1639.0
16 TraesCS5D01G419900 chr4D 72.862 269 57 13 196 461 418745799 418745544 1.140000e-10 78.7
17 TraesCS5D01G419900 chr5B 88.017 1402 99 28 1 1364 589109990 589111360 0.000000e+00 1594.0
18 TraesCS5D01G419900 chr5B 88.339 626 39 11 1402 2014 589114915 589115519 0.000000e+00 721.0
19 TraesCS5D01G419900 chr5B 85.533 629 39 21 2656 3235 589115861 589116486 9.070000e-171 610.0
20 TraesCS5D01G419900 chr5B 89.779 362 15 9 3280 3640 589116490 589116830 9.730000e-121 444.0
21 TraesCS5D01G419900 chr5B 83.951 405 46 12 3416 3818 485906759 485906372 1.680000e-98 370.0
22 TraesCS5D01G419900 chr5B 93.590 156 10 0 3657 3812 589116910 589117065 2.290000e-57 233.0
23 TraesCS5D01G419900 chr5B 83.505 194 19 5 2694 2878 485909123 485908934 6.560000e-38 169.0
24 TraesCS5D01G419900 chr5A 90.396 833 36 16 855 1663 599797418 599798230 0.000000e+00 1055.0
25 TraesCS5D01G419900 chr5A 92.873 449 20 4 2636 3075 599798605 599799050 3.220000e-180 641.0
26 TraesCS5D01G419900 chr5A 87.273 495 45 5 3 496 599787064 599787541 2.000000e-152 549.0
27 TraesCS5D01G419900 chr5A 95.708 233 7 2 3506 3737 599799342 599799572 4.660000e-99 372.0
28 TraesCS5D01G419900 chr5A 91.855 221 12 3 3188 3405 599799111 599799328 1.720000e-78 303.0
29 TraesCS5D01G419900 chr5A 89.956 229 20 3 567 793 599796303 599796530 3.730000e-75 292.0
30 TraesCS5D01G419900 chr5A 95.385 65 3 0 504 568 599796145 599796209 1.880000e-18 104.0
31 TraesCS5D01G419900 chr5A 97.143 35 1 0 3772 3806 599799571 599799605 4.120000e-05 60.2
32 TraesCS5D01G419900 chr2D 80.382 943 81 49 704 1611 681924 682797 4.190000e-174 621.0
33 TraesCS5D01G419900 chr2D 98.901 273 3 0 1352 1624 42209794 42209522 4.430000e-134 488.0
34 TraesCS5D01G419900 chr2A 82.674 733 67 29 912 1611 533336 534041 2.540000e-166 595.0
35 TraesCS5D01G419900 chr2B 80.172 696 89 28 447 1126 10778203 10777541 3.450000e-130 475.0
36 TraesCS5D01G419900 chr2B 80.048 421 50 21 1198 1611 10776991 10776598 8.080000e-72 281.0
37 TraesCS5D01G419900 chr2B 84.753 223 29 4 3416 3635 19070509 19070729 6.420000e-53 219.0
38 TraesCS5D01G419900 chr2B 84.375 224 29 4 3416 3635 18924878 18924657 8.310000e-52 215.0
39 TraesCS5D01G419900 chr2B 86.154 195 14 11 2695 2878 10775043 10774851 8.370000e-47 198.0
40 TraesCS5D01G419900 chr2B 81.159 138 23 3 10 146 10778531 10778396 1.450000e-19 108.0
41 TraesCS5D01G419900 chr7A 77.665 197 41 3 197 392 78542557 78542751 2.410000e-22 117.0
42 TraesCS5D01G419900 chr4B 100.000 29 0 0 913 941 34018857 34018885 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G419900 chr5D 480698664 480702481 3817 False 7051.000000 7051 100.000000 1 3818 1 chr5D.!!$F1 3817
1 TraesCS5D01G419900 chr5D 511472531 511473800 1269 False 2230.000000 2230 98.346000 1352 2621 1 chr5D.!!$F2 1269
2 TraesCS5D01G419900 chr5D 55035362 55036280 918 True 1631.000000 1631 98.694000 1703 2621 1 chr5D.!!$R1 918
3 TraesCS5D01G419900 chr7D 620849483 620850751 1268 False 2244.000000 2244 98.583000 1352 2621 1 chr7D.!!$F1 1269
4 TraesCS5D01G419900 chrUn 237413451 237414369 918 False 1659.000000 1659 99.238000 1703 2621 1 chrUn.!!$F1 918
5 TraesCS5D01G419900 chrUn 259941042 259941960 918 False 1659.000000 1659 99.238000 1703 2621 1 chrUn.!!$F2 918
6 TraesCS5D01G419900 chr6D 420438099 420439017 918 True 1659.000000 1659 99.238000 1703 2621 1 chr6D.!!$R1 918
7 TraesCS5D01G419900 chr1D 59641772 59642690 918 False 1659.000000 1659 99.238000 1703 2621 1 chr1D.!!$F1 918
8 TraesCS5D01G419900 chr3D 535568609 535569527 918 False 1642.000000 1642 98.912000 1703 2621 1 chr3D.!!$F1 918
9 TraesCS5D01G419900 chr4D 210473562 210474478 916 True 1639.000000 1639 98.909000 1703 2619 1 chr4D.!!$R1 916
10 TraesCS5D01G419900 chr5B 589109990 589117065 7075 False 720.400000 1594 89.051600 1 3812 5 chr5B.!!$F1 3811
11 TraesCS5D01G419900 chr5B 485906372 485909123 2751 True 269.500000 370 83.728000 2694 3818 2 chr5B.!!$R1 1124
12 TraesCS5D01G419900 chr5A 599796145 599799605 3460 False 403.885714 1055 93.330857 504 3806 7 chr5A.!!$F2 3302
13 TraesCS5D01G419900 chr2D 681924 682797 873 False 621.000000 621 80.382000 704 1611 1 chr2D.!!$F1 907
14 TraesCS5D01G419900 chr2A 533336 534041 705 False 595.000000 595 82.674000 912 1611 1 chr2A.!!$F1 699
15 TraesCS5D01G419900 chr2B 10774851 10778531 3680 True 265.500000 475 81.883250 10 2878 4 chr2B.!!$R2 2868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
349 352 0.162933 GTTGTGCGTATGTGACCACG 59.837 55.000 2.89 2.89 41.04 4.94 F
740 849 0.392998 AGGTGATAAAGCCTGTGCCG 60.393 55.000 0.00 0.00 38.69 5.69 F
1177 2144 1.152963 ACACAAGACACAGCCCACC 60.153 57.895 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1189 2617 0.528684 GGTCAGAAATCGGCGAGGAG 60.529 60.00 17.22 3.49 0.0 3.69 R
1701 6901 3.243839 ACACATTGCAAGGAATCGCTTTT 60.244 39.13 19.41 0.00 0.0 2.27 R
2833 8584 0.744281 ACAAAACTGCGGGACAAAGG 59.256 50.00 0.00 0.00 0.0 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 3.202151 TCATGGATTTGGTTCCCCTCTAC 59.798 47.826 0.00 0.00 34.67 2.59
102 103 1.066071 GTTCCCCTCTACTTGCCACTC 60.066 57.143 0.00 0.00 0.00 3.51
203 205 3.118454 CGCTCAAACGGATGGCGT 61.118 61.111 13.35 0.00 40.78 5.68
258 260 1.203994 TCCTCCTCAATTTCGTCCGTC 59.796 52.381 0.00 0.00 0.00 4.79
261 263 1.082117 CCTCAATTTCGTCCGTCGGG 61.082 60.000 12.29 0.00 40.32 5.14
300 302 3.460648 GGCGTAGATTCTTGCCAGT 57.539 52.632 19.31 0.00 46.76 4.00
302 304 2.084546 GGCGTAGATTCTTGCCAGTTT 58.915 47.619 19.31 0.00 46.76 2.66
332 334 4.734917 CGATGAGGTTAGAGTTTCTCGTT 58.265 43.478 0.00 0.00 35.36 3.85
342 344 2.729882 GAGTTTCTCGTTGTGCGTATGT 59.270 45.455 0.00 0.00 42.13 2.29
346 348 0.713883 CTCGTTGTGCGTATGTGACC 59.286 55.000 0.00 0.00 42.13 4.02
349 352 0.162933 GTTGTGCGTATGTGACCACG 59.837 55.000 2.89 2.89 41.04 4.94
398 401 2.404923 TCAAAGGTTCAACCACGACA 57.595 45.000 9.90 0.00 41.95 4.35
402 405 1.892209 AGGTTCAACCACGACAATCC 58.108 50.000 9.90 0.00 41.95 3.01
410 413 3.000819 ACGACAATCCCGGCTCCA 61.001 61.111 0.00 0.00 0.00 3.86
447 450 2.928361 CGCGTGCACGAAGACTTT 59.072 55.556 41.19 0.00 43.02 2.66
448 451 1.154836 CGCGTGCACGAAGACTTTC 60.155 57.895 41.19 20.02 43.02 2.62
459 462 2.860735 CGAAGACTTTCCGGATGTCATC 59.139 50.000 28.35 25.36 35.47 2.92
467 470 2.466846 TCCGGATGTCATCAAGAAGGA 58.533 47.619 14.72 10.94 0.00 3.36
495 498 1.005569 ACTCTGGTATGGGAGTGACGA 59.994 52.381 0.00 0.00 40.71 4.20
498 501 0.528924 TGGTATGGGAGTGACGAACG 59.471 55.000 0.00 0.00 0.00 3.95
500 503 1.407979 GGTATGGGAGTGACGAACGAT 59.592 52.381 0.14 0.00 0.00 3.73
525 528 1.227409 TCAGCGGCTCGTTTTGACA 60.227 52.632 0.00 0.00 0.00 3.58
609 707 6.209788 TGCTTTATATTTCCGGTGAACCTTTT 59.790 34.615 0.00 0.00 0.00 2.27
620 723 7.371936 TCCGGTGAACCTTTTGTAAATATTTG 58.628 34.615 11.05 0.00 0.00 2.32
655 758 8.898761 AGTAAAATGCACATTATCGGACAATAA 58.101 29.630 0.00 0.00 0.00 1.40
740 849 0.392998 AGGTGATAAAGCCTGTGCCG 60.393 55.000 0.00 0.00 38.69 5.69
872 1813 6.594788 AGAATTTTTCCTTGCTGCAGAATA 57.405 33.333 20.43 0.00 0.00 1.75
873 1814 6.393171 AGAATTTTTCCTTGCTGCAGAATAC 58.607 36.000 20.43 0.00 0.00 1.89
874 1815 5.990120 ATTTTTCCTTGCTGCAGAATACT 57.010 34.783 20.43 0.00 0.00 2.12
893 1835 2.578021 ACTTACTACTCCCCGTACTCCA 59.422 50.000 0.00 0.00 0.00 3.86
1093 2043 1.872679 CGCTACTTCTCGTTCGCCC 60.873 63.158 0.00 0.00 0.00 6.13
1165 2132 1.891919 CCCCGTCCACACACACAAG 60.892 63.158 0.00 0.00 0.00 3.16
1177 2144 1.152963 ACACAAGACACAGCCCACC 60.153 57.895 0.00 0.00 0.00 4.61
1701 6901 5.010820 TGTTCATGATTTTCAAGTCCATGCA 59.989 36.000 0.00 0.00 35.76 3.96
2226 7640 6.145535 GTGCTATTTTTGATACTGCTATGGC 58.854 40.000 0.00 0.00 39.26 4.40
2347 7801 3.542712 TTGCTTTTGTCGCTGATCTTC 57.457 42.857 0.00 0.00 0.00 2.87
2621 8100 1.411787 CCTCCTGACCGTTCCCTATCT 60.412 57.143 0.00 0.00 0.00 1.98
2623 8102 1.286849 TCCTGACCGTTCCCTATCTGA 59.713 52.381 0.00 0.00 0.00 3.27
2630 8357 5.045869 TGACCGTTCCCTATCTGAGATTTTT 60.046 40.000 0.00 0.00 0.00 1.94
2665 8393 1.098050 CCTTGCATAGTCCTGGCAAC 58.902 55.000 0.00 0.00 42.12 4.17
2672 8404 2.672961 TAGTCCTGGCAACGATGAAG 57.327 50.000 0.00 0.00 42.51 3.02
2678 8410 2.159476 CCTGGCAACGATGAAGATGTTG 60.159 50.000 0.00 0.22 44.38 3.33
2692 8437 7.099266 TGAAGATGTTGATTCTTGTGTTGTT 57.901 32.000 0.00 0.00 33.65 2.83
2763 8508 2.911143 CCTAGCAAGATGGGCCGT 59.089 61.111 0.00 0.00 0.00 5.68
2951 8738 5.874261 GCAGAGCAATAGAGAGTTTCTTCTT 59.126 40.000 0.00 0.00 37.36 2.52
2952 8739 6.183360 GCAGAGCAATAGAGAGTTTCTTCTTG 60.183 42.308 0.00 0.00 37.36 3.02
2953 8740 6.873076 CAGAGCAATAGAGAGTTTCTTCTTGT 59.127 38.462 0.00 0.00 37.36 3.16
2962 8749 8.147642 AGAGAGTTTCTTCTTGTGTAACATTG 57.852 34.615 0.00 0.00 39.20 2.82
3041 8856 1.351017 AGGTAGTAGCTGCAGGCAAAA 59.649 47.619 17.12 0.00 44.79 2.44
3074 8940 2.935849 GGTGATGATGCATTGACGTGTA 59.064 45.455 0.00 0.00 0.00 2.90
3075 8941 3.001634 GGTGATGATGCATTGACGTGTAG 59.998 47.826 0.00 0.00 0.00 2.74
3077 8943 1.368641 TGATGCATTGACGTGTAGCC 58.631 50.000 0.00 0.00 0.00 3.93
3081 8947 1.906994 GCATTGACGTGTAGCCGCAA 61.907 55.000 0.00 0.00 0.00 4.85
3180 9171 3.773974 GCTCGTTTGAGGAGAGCG 58.226 61.111 0.81 0.00 46.14 5.03
3185 9176 2.035442 GTTTGAGGAGAGCGGCACC 61.035 63.158 1.45 2.62 0.00 5.01
3198 9549 4.036498 AGAGCGGCACCGTATATATATGTC 59.964 45.833 11.27 0.00 42.09 3.06
3250 9601 3.498397 GCTGGATTTGGTACGTCCATATG 59.502 47.826 12.23 0.00 46.60 1.78
3277 10411 0.605589 GGCGTAACACCCTCTGCTTT 60.606 55.000 0.00 0.00 0.00 3.51
3405 10864 4.202503 ACAGGAAGAAGAAGAGGCAATGAA 60.203 41.667 0.00 0.00 0.00 2.57
3408 10867 3.409026 AGAAGAAGAGGCAATGAACGT 57.591 42.857 0.00 0.00 0.00 3.99
3411 10870 0.721718 GAAGAGGCAATGAACGTCGG 59.278 55.000 0.00 0.00 0.00 4.79
3412 10871 0.673644 AAGAGGCAATGAACGTCGGG 60.674 55.000 0.00 0.00 0.00 5.14
3414 10873 0.462047 GAGGCAATGAACGTCGGGAT 60.462 55.000 0.00 0.00 0.00 3.85
3420 10879 3.000041 CAATGAACGTCGGGATCAGAAA 59.000 45.455 0.00 0.00 0.00 2.52
3425 10884 3.347411 GTCGGGATCAGAAAGACGG 57.653 57.895 0.00 0.00 0.00 4.79
3491 10951 1.301165 GCAACCCCAAGTACGACGT 60.301 57.895 5.52 5.52 0.00 4.34
3500 10960 1.035139 AAGTACGACGTGACCCAGTT 58.965 50.000 11.56 0.00 0.00 3.16
3639 11100 4.514816 CCACAACTCAACACATGTACATCA 59.485 41.667 5.07 0.00 0.00 3.07
3640 11101 5.181811 CCACAACTCAACACATGTACATCAT 59.818 40.000 5.07 0.00 37.22 2.45
3648 11109 8.970691 TCAACACATGTACATCATATAGATCG 57.029 34.615 5.07 0.00 33.72 3.69
3700 11226 5.040635 CCATTTCAACTTTTGCTTACACGT 58.959 37.500 0.00 0.00 0.00 4.49
3755 11281 5.682943 TTGCAAATGAGGTACAACTACAC 57.317 39.130 0.00 0.00 0.00 2.90
3814 11340 5.227908 TGCGTTATATAGCTCCAAGTTAGC 58.772 41.667 0.00 0.00 40.40 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 3.762247 CCCGCCATTGGTTGCCAG 61.762 66.667 4.26 0.00 33.81 4.85
138 140 3.986277 ACTTATGTATTAACCGGAGCCG 58.014 45.455 9.46 1.06 39.44 5.52
170 172 0.593128 AGCGCCATCACAACAAGAAC 59.407 50.000 2.29 0.00 0.00 3.01
203 205 1.067565 ACTGCATCGAAGAAGAAGCGA 60.068 47.619 1.83 0.00 43.58 4.93
258 260 1.607628 ACTCCGATCTAATTCGTCCCG 59.392 52.381 0.00 0.00 37.42 5.14
261 263 3.797256 CCAACACTCCGATCTAATTCGTC 59.203 47.826 0.00 0.00 37.42 4.20
300 302 2.859165 AACCTCATCGCCTTGAGAAA 57.141 45.000 11.20 0.00 44.88 2.52
302 304 2.690497 CTCTAACCTCATCGCCTTGAGA 59.310 50.000 11.20 0.00 44.88 3.27
332 334 0.388006 CTCGTGGTCACATACGCACA 60.388 55.000 1.90 0.00 39.94 4.57
342 344 1.414550 TGACACCAAATCTCGTGGTCA 59.585 47.619 0.00 0.00 46.79 4.02
346 348 4.248859 AGAATCTGACACCAAATCTCGTG 58.751 43.478 0.00 0.00 36.04 4.35
374 377 2.546368 CGTGGTTGAACCTTTGAATCGA 59.454 45.455 16.33 0.00 39.58 3.59
410 413 2.518825 CCTACGGACTAGCGCCCT 60.519 66.667 2.29 0.00 0.00 5.19
447 450 2.168521 GTCCTTCTTGATGACATCCGGA 59.831 50.000 6.61 6.61 0.00 5.14
448 451 2.093500 TGTCCTTCTTGATGACATCCGG 60.093 50.000 12.90 0.00 34.28 5.14
459 462 4.256920 CCAGAGTTGGTATGTCCTTCTTG 58.743 47.826 0.00 0.00 39.79 3.02
495 498 1.291877 GCCGCTGACAAGTCATCGTT 61.292 55.000 20.51 0.00 44.70 3.85
498 501 1.416813 CGAGCCGCTGACAAGTCATC 61.417 60.000 0.00 0.00 39.13 2.92
500 503 2.049156 CGAGCCGCTGACAAGTCA 60.049 61.111 0.00 2.56 38.06 3.41
626 729 6.597672 TGTCCGATAATGTGCATTTTACTCTT 59.402 34.615 2.56 0.00 32.50 2.85
628 731 6.358118 TGTCCGATAATGTGCATTTTACTC 57.642 37.500 2.56 0.00 32.50 2.59
636 739 8.389779 ACATTATTATTGTCCGATAATGTGCA 57.610 30.769 15.99 0.00 46.81 4.57
716 820 3.989817 GCACAGGCTTTATCACCTTTTTG 59.010 43.478 0.00 0.00 32.56 2.44
872 1813 2.578021 TGGAGTACGGGGAGTAGTAAGT 59.422 50.000 0.00 0.00 39.00 2.24
873 1814 2.948315 GTGGAGTACGGGGAGTAGTAAG 59.052 54.545 0.00 0.00 39.00 2.34
874 1815 3.004752 GTGGAGTACGGGGAGTAGTAA 57.995 52.381 0.00 0.00 39.00 2.24
1049 1999 1.690219 GATGGTGAGGCCGATGAGGT 61.690 60.000 0.00 0.00 43.70 3.85
1189 2617 0.528684 GGTCAGAAATCGGCGAGGAG 60.529 60.000 17.22 3.49 0.00 3.69
1342 2775 3.311871 CGAAAGCATCTGGATTCAGGAAG 59.688 47.826 0.00 0.00 41.23 3.46
1701 6901 3.243839 ACACATTGCAAGGAATCGCTTTT 60.244 39.130 19.41 0.00 0.00 2.27
2226 7640 8.030692 AGTGACATTAACCAAATGAACATGATG 58.969 33.333 0.00 0.00 46.81 3.07
2347 7801 8.970691 ACTATCAATCGTTTTCCTGATTTTTG 57.029 30.769 0.00 0.00 32.68 2.44
2500 7979 5.368523 TCCTTAAGGTGGATTATGGAACGAT 59.631 40.000 21.04 0.00 36.53 3.73
2665 8393 6.174451 ACACAAGAATCAACATCTTCATCG 57.826 37.500 0.00 0.00 34.99 3.84
2672 8404 5.519566 TGCAAACAACACAAGAATCAACATC 59.480 36.000 0.00 0.00 0.00 3.06
2678 8410 3.798337 CACCTGCAAACAACACAAGAATC 59.202 43.478 0.00 0.00 0.00 2.52
2763 8508 2.741092 GGCACCCTCTTGTCGACA 59.259 61.111 15.76 15.76 0.00 4.35
2833 8584 0.744281 ACAAAACTGCGGGACAAAGG 59.256 50.000 0.00 0.00 0.00 3.11
2894 8657 1.980844 GCGCAATGTCTGTTCATGTTG 59.019 47.619 0.30 0.00 0.00 3.33
2976 8763 1.000396 CCTGCTTCCCCTTCCCTTG 60.000 63.158 0.00 0.00 0.00 3.61
3041 8856 3.302161 CATCATCACCATCCACCCAAAT 58.698 45.455 0.00 0.00 0.00 2.32
3180 9171 3.181484 TGGCGACATATATATACGGTGCC 60.181 47.826 19.50 19.50 39.18 5.01
3185 9176 7.921214 AGAGGATTTTGGCGACATATATATACG 59.079 37.037 0.00 13.58 42.32 3.06
3198 9549 5.818136 TCAAATTCTAGAGGATTTTGGCG 57.182 39.130 14.36 0.00 41.65 5.69
3212 9563 5.813513 ATCCAGCCAAAGTTTCAAATTCT 57.186 34.783 0.00 0.00 0.00 2.40
3250 9601 2.943653 GTGTTACGCCACCTGCAC 59.056 61.111 0.00 0.00 41.33 4.57
3263 10397 2.050144 TCAGAGAAAGCAGAGGGTGTT 58.950 47.619 0.00 0.00 0.00 3.32
3277 10411 0.472471 GGGTGTGTGGGTTTCAGAGA 59.528 55.000 0.00 0.00 0.00 3.10
3405 10864 0.170561 CGTCTTTCTGATCCCGACGT 59.829 55.000 0.00 0.00 41.60 4.34
3408 10867 1.956629 GCCCGTCTTTCTGATCCCGA 61.957 60.000 0.00 0.00 0.00 5.14
3411 10870 0.462759 CAGGCCCGTCTTTCTGATCC 60.463 60.000 0.00 0.00 0.00 3.36
3412 10871 0.250513 ACAGGCCCGTCTTTCTGATC 59.749 55.000 0.00 0.00 0.00 2.92
3414 10873 0.034896 GAACAGGCCCGTCTTTCTGA 59.965 55.000 0.00 0.00 0.00 3.27
3420 10879 4.681978 GCGTGAACAGGCCCGTCT 62.682 66.667 0.00 0.00 36.30 4.18
3425 10884 4.025401 CAACCGCGTGAACAGGCC 62.025 66.667 4.92 0.00 38.86 5.19
3479 10938 0.388134 CTGGGTCACGTCGTACTTGG 60.388 60.000 0.00 0.00 0.00 3.61
3491 10951 0.036732 GCAGGTGATCAACTGGGTCA 59.963 55.000 35.60 0.00 45.96 4.02
3639 11100 6.242396 ACTGTACTTCTCTGGCGATCTATAT 58.758 40.000 0.00 0.00 0.00 0.86
3640 11101 5.622180 ACTGTACTTCTCTGGCGATCTATA 58.378 41.667 0.00 0.00 0.00 1.31
3648 11109 3.239587 GAAGGACTGTACTTCTCTGGC 57.760 52.381 22.63 0.00 40.81 4.85
3700 11226 3.181435 TGTTCCTTCATTCATGTGGACCA 60.181 43.478 0.00 0.00 33.76 4.02
3755 11281 0.611618 TGGCTACCATGTTGGGCAAG 60.612 55.000 0.00 0.00 43.37 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.