Multiple sequence alignment - TraesCS5D01G419300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G419300 chr5D 100.000 4907 0 0 1 4907 480480012 480475106 0.000000e+00 9062.0
1 TraesCS5D01G419300 chr5D 87.665 454 42 6 1 448 482299678 482300123 2.620000e-142 516.0
2 TraesCS5D01G419300 chr5D 84.412 417 31 14 841 1253 482300491 482300877 3.580000e-101 379.0
3 TraesCS5D01G419300 chr5D 90.204 245 15 3 1405 1648 482301300 482301536 1.330000e-80 311.0
4 TraesCS5D01G419300 chr5D 84.000 225 16 7 572 796 482300192 482300396 1.080000e-46 198.0
5 TraesCS5D01G419300 chr5A 94.170 1904 77 10 2148 4036 599220385 599218501 0.000000e+00 2870.0
6 TraesCS5D01G419300 chr5A 90.597 989 47 19 1183 2146 599221437 599220470 0.000000e+00 1269.0
7 TraesCS5D01G419300 chr5A 93.548 527 23 1 1 516 599222878 599222352 0.000000e+00 774.0
8 TraesCS5D01G419300 chr5A 89.888 445 39 4 5 448 602004585 602005024 7.130000e-158 568.0
9 TraesCS5D01G419300 chr5A 86.768 461 28 9 489 922 599222352 599221898 2.660000e-132 483.0
10 TraesCS5D01G419300 chr5A 87.625 299 24 6 1366 1660 602045509 602045798 7.870000e-88 335.0
11 TraesCS5D01G419300 chr5A 86.441 177 14 3 572 744 602005092 602005262 8.390000e-43 185.0
12 TraesCS5D01G419300 chr5A 90.625 96 7 1 4075 4168 599218501 599218406 5.160000e-25 126.0
13 TraesCS5D01G419300 chr5B 94.406 876 34 4 1 861 588682458 588681583 0.000000e+00 1332.0
14 TraesCS5D01G419300 chr5B 86.406 537 42 10 977 1505 588681283 588680770 4.290000e-155 558.0
15 TraesCS5D01G419300 chr5B 89.815 216 18 3 1500 1712 588680429 588680215 1.740000e-69 274.0
16 TraesCS5D01G419300 chr5B 80.992 363 38 13 1290 1645 591656040 591656378 4.870000e-65 259.0
17 TraesCS5D01G419300 chr5B 89.474 209 13 5 4170 4378 588658891 588658692 6.300000e-64 255.0
18 TraesCS5D01G419300 chr5B 82.155 297 34 7 949 1245 591655427 591655704 2.280000e-58 237.0
19 TraesCS5D01G419300 chr5B 83.628 226 14 11 572 797 591654933 591655135 1.800000e-44 191.0
20 TraesCS5D01G419300 chr5B 88.235 102 5 4 841 942 591655239 591655333 1.120000e-21 115.0
21 TraesCS5D01G419300 chr4B 81.502 1465 241 21 2400 3849 128022406 128020957 0.000000e+00 1177.0
22 TraesCS5D01G419300 chr4B 81.651 327 54 5 3170 3493 128023796 128023473 2.910000e-67 267.0
23 TraesCS5D01G419300 chr4B 100.000 31 0 0 4877 4907 602680041 602680071 1.910000e-04 58.4
24 TraesCS5D01G419300 chr4A 81.327 1462 246 18 2400 3849 503612857 503611411 0.000000e+00 1162.0
25 TraesCS5D01G419300 chr4D 81.246 1461 252 16 2400 3849 91220984 91219535 0.000000e+00 1160.0
26 TraesCS5D01G419300 chr4D 87.590 556 3 13 4378 4879 12035489 12034946 7.080000e-163 584.0
27 TraesCS5D01G419300 chr4D 81.231 325 56 4 3171 3493 91222396 91222075 1.750000e-64 257.0
28 TraesCS5D01G419300 chr4D 92.683 41 2 1 4868 4907 14974056 14974096 1.910000e-04 58.4
29 TraesCS5D01G419300 chr4D 100.000 31 0 0 4876 4906 65079349 65079379 1.910000e-04 58.4
30 TraesCS5D01G419300 chr6D 92.692 561 10 6 4378 4907 461429657 461429097 0.000000e+00 780.0
31 TraesCS5D01G419300 chr2A 85.393 89 13 0 4378 4466 538390677 538390765 5.230000e-15 93.5
32 TraesCS5D01G419300 chr2A 88.571 70 8 0 4378 4447 15755645 15755714 8.750000e-13 86.1
33 TraesCS5D01G419300 chr1B 84.444 90 11 3 4381 4468 536697800 536697712 8.750000e-13 86.1
34 TraesCS5D01G419300 chr6A 83.516 91 13 2 4377 4466 150134395 150134484 3.150000e-12 84.2
35 TraesCS5D01G419300 chr3A 85.185 81 10 1 4378 4458 700725928 700726006 1.130000e-11 82.4
36 TraesCS5D01G419300 chr7B 81.915 94 14 2 4378 4469 310410715 310410807 5.270000e-10 76.8
37 TraesCS5D01G419300 chr1A 81.609 87 15 1 4382 4467 496421750 496421664 2.450000e-08 71.3
38 TraesCS5D01G419300 chr7A 87.097 62 2 6 1770 1827 53264459 53264518 1.140000e-06 65.8
39 TraesCS5D01G419300 chr7D 100.000 32 0 0 4876 4907 230445094 230445063 5.300000e-05 60.2
40 TraesCS5D01G419300 chr3D 97.222 36 0 1 4872 4907 504043050 504043016 5.300000e-05 60.2
41 TraesCS5D01G419300 chr3D 100.000 29 0 0 4879 4907 8717565 8717537 2.000000e-03 54.7
42 TraesCS5D01G419300 chr1D 96.970 33 1 0 4875 4907 468804447 468804479 6.860000e-04 56.5
43 TraesCS5D01G419300 chr3B 94.444 36 1 1 4872 4907 183482901 183482867 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G419300 chr5D 480475106 480480012 4906 True 9062.000000 9062 100.00000 1 4907 1 chr5D.!!$R1 4906
1 TraesCS5D01G419300 chr5D 482299678 482301536 1858 False 351.000000 516 86.57025 1 1648 4 chr5D.!!$F1 1647
2 TraesCS5D01G419300 chr5A 599218406 599222878 4472 True 1104.400000 2870 91.14160 1 4168 5 chr5A.!!$R1 4167
3 TraesCS5D01G419300 chr5A 602004585 602005262 677 False 376.500000 568 88.16450 5 744 2 chr5A.!!$F2 739
4 TraesCS5D01G419300 chr5B 588680215 588682458 2243 True 721.333333 1332 90.20900 1 1712 3 chr5B.!!$R2 1711
5 TraesCS5D01G419300 chr5B 591654933 591656378 1445 False 200.500000 259 83.75250 572 1645 4 chr5B.!!$F1 1073
6 TraesCS5D01G419300 chr4B 128020957 128023796 2839 True 722.000000 1177 81.57650 2400 3849 2 chr4B.!!$R1 1449
7 TraesCS5D01G419300 chr4A 503611411 503612857 1446 True 1162.000000 1162 81.32700 2400 3849 1 chr4A.!!$R1 1449
8 TraesCS5D01G419300 chr4D 91219535 91222396 2861 True 708.500000 1160 81.23850 2400 3849 2 chr4D.!!$R2 1449
9 TraesCS5D01G419300 chr4D 12034946 12035489 543 True 584.000000 584 87.59000 4378 4879 1 chr4D.!!$R1 501
10 TraesCS5D01G419300 chr6D 461429097 461429657 560 True 780.000000 780 92.69200 4378 4907 1 chr6D.!!$R1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 292 0.874175 TGTTGGTCGTGTCTTCTGCG 60.874 55.000 0.0 0.0 0.00 5.18 F
800 877 1.802960 CTGTTGCATGTGTCCTCACTC 59.197 52.381 0.0 0.0 44.14 3.51 F
1163 1854 0.713883 CACCGCACGATTACAGTGAC 59.286 55.000 0.0 0.0 41.83 3.67 F
2325 3979 0.253327 GACCCCTTCATGTCACCTCC 59.747 60.000 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1143 1801 0.315886 TCACTGTAATCGTGCGGTGT 59.684 50.0 4.10 0.0 44.57 4.16 R
2325 3979 1.016130 AGAGCAGCAACACGATTCCG 61.016 55.0 0.00 0.0 42.50 4.30 R
3150 4814 0.605319 AGTTCGCCGCAAATTCTCCA 60.605 50.0 0.00 0.0 0.00 3.86 R
4312 5986 0.032130 AAGCGCGTGAAGAGTCTGAA 59.968 50.0 8.43 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
291 292 0.874175 TGTTGGTCGTGTCTTCTGCG 60.874 55.000 0.00 0.00 0.00 5.18
383 391 4.224433 TCTTGAGTGATTCGTGTTACGTC 58.776 43.478 0.00 0.00 43.14 4.34
448 456 4.679373 TCAGATGGAACCTGAGCTTATC 57.321 45.455 0.00 0.00 35.89 1.75
509 573 1.980765 TCACTGGAACCTGAGCTTGAT 59.019 47.619 4.82 0.00 0.00 2.57
779 856 2.874648 TATGCAGGCACAAGAGGCGG 62.875 60.000 0.00 0.00 39.37 6.13
800 877 1.802960 CTGTTGCATGTGTCCTCACTC 59.197 52.381 0.00 0.00 44.14 3.51
805 882 1.988063 CATGTGTCCTCACTCTCGTG 58.012 55.000 0.00 0.00 44.14 4.35
838 931 7.011016 TGTGATGATGACGTGATGGTTTATTAC 59.989 37.037 0.00 0.00 0.00 1.89
943 1298 5.220662 GGAAATATGTGATGAACCTGTGACG 60.221 44.000 0.00 0.00 0.00 4.35
949 1304 4.082949 TGTGATGAACCTGTGACGTACTAG 60.083 45.833 0.00 0.00 0.00 2.57
953 1308 7.011763 GTGATGAACCTGTGACGTACTAGTATA 59.988 40.741 5.75 0.00 0.00 1.47
954 1309 7.553760 TGATGAACCTGTGACGTACTAGTATAA 59.446 37.037 5.75 0.00 0.00 0.98
955 1310 7.870509 TGAACCTGTGACGTACTAGTATAAT 57.129 36.000 5.75 0.00 0.00 1.28
959 1314 5.099484 TGTGACGTACTAGTATAATGCCG 57.901 43.478 5.75 6.35 0.00 5.69
1013 1670 2.938451 TGTGCAATATGGAAAGCTCTCG 59.062 45.455 0.00 0.00 0.00 4.04
1044 1701 6.849085 TCTTCTCTGATACTTCTTCAAGCT 57.151 37.500 0.00 0.00 32.09 3.74
1050 1707 6.191315 TCTGATACTTCTTCAAGCTAGGAGT 58.809 40.000 1.55 1.55 35.62 3.85
1051 1708 6.096141 TCTGATACTTCTTCAAGCTAGGAGTG 59.904 42.308 6.23 0.00 33.51 3.51
1052 1709 5.717178 TGATACTTCTTCAAGCTAGGAGTGT 59.283 40.000 6.23 0.00 33.51 3.55
1053 1710 6.890268 TGATACTTCTTCAAGCTAGGAGTGTA 59.110 38.462 6.23 4.56 33.51 2.90
1054 1711 7.561722 TGATACTTCTTCAAGCTAGGAGTGTAT 59.438 37.037 6.23 8.04 33.51 2.29
1055 1712 6.613153 ACTTCTTCAAGCTAGGAGTGTATT 57.387 37.500 0.00 0.00 30.17 1.89
1097 1754 6.014584 GGGTCTTTGGAAGAATTACCAACAAT 60.015 38.462 9.70 0.00 44.34 2.71
1139 1797 8.542497 TTCTGGTATGTGTGATACAGTTTAAC 57.458 34.615 0.00 0.00 43.80 2.01
1152 1810 1.595794 AGTTTAACTGAACACCGCACG 59.404 47.619 0.00 0.00 31.94 5.34
1163 1854 0.713883 CACCGCACGATTACAGTGAC 59.286 55.000 0.00 0.00 41.83 3.67
1177 1901 9.175060 CGATTACAGTGACTGATTATACAAGAG 57.825 37.037 20.97 0.00 35.18 2.85
1223 1955 7.170828 CAGTGTGTTACTAACTATGACAGCAAA 59.829 37.037 0.71 0.00 37.60 3.68
1224 1956 7.385205 AGTGTGTTACTAACTATGACAGCAAAG 59.615 37.037 0.71 0.00 38.04 2.77
1536 3079 7.496529 TTCTGAATTTGTGATTCTTTCTCGT 57.503 32.000 1.09 0.00 0.00 4.18
1537 3080 7.496529 TCTGAATTTGTGATTCTTTCTCGTT 57.503 32.000 1.09 0.00 0.00 3.85
1564 3107 6.235231 ACCATAACTGAATAATCTCCGTGT 57.765 37.500 0.00 0.00 0.00 4.49
1581 3125 2.851824 CGTGTCTGAAAAACAAGCAACC 59.148 45.455 0.00 0.00 0.00 3.77
1620 3164 3.313249 TCTGAAATAATGATGCCTGCACG 59.687 43.478 0.00 0.00 0.00 5.34
1684 3233 6.238293 CGTAGCTGTTACAGTGTAGTATGCTA 60.238 42.308 14.23 17.46 33.43 3.49
1699 3248 4.991056 AGTATGCTATACAATGCACCTTCG 59.009 41.667 0.00 0.00 42.26 3.79
1750 3299 4.070009 GGACTTCACGTGGTTATTTTCCT 58.930 43.478 17.00 0.00 0.00 3.36
1761 3310 8.733458 ACGTGGTTATTTTCCTTTATTCTTACC 58.267 33.333 0.00 0.00 0.00 2.85
1785 3334 4.202336 GGGTGCTTAATAGTTACTCCCTCC 60.202 50.000 0.00 0.00 0.00 4.30
1795 3344 4.351127 AGTTACTCCCTCCGTAAACAGAT 58.649 43.478 0.00 0.00 0.00 2.90
1862 3411 4.839796 ACGTAAAACAAAATCGTGAGTGG 58.160 39.130 0.00 0.00 33.55 4.00
1914 3463 2.033550 AGAGCTTAGCATCCGAGTAACG 59.966 50.000 7.07 0.00 42.18 3.18
1919 3468 4.607955 CTTAGCATCCGAGTAACGATTGA 58.392 43.478 0.00 0.00 45.77 2.57
1931 3480 6.695713 CGAGTAACGATTGATATTGTTCAGGA 59.304 38.462 0.00 0.00 45.77 3.86
1967 3537 4.021807 TGACCTGTGCTACGATGTTCTTAA 60.022 41.667 0.00 0.00 0.00 1.85
1969 3539 5.109903 ACCTGTGCTACGATGTTCTTAATC 58.890 41.667 0.00 0.00 0.00 1.75
2008 3578 4.081752 TGCAGTGACAAGTTTTGTGGAAAT 60.082 37.500 0.00 0.00 45.52 2.17
2042 3612 7.706607 GGTTGGTGAGCCATCTTATTATTTTTC 59.293 37.037 0.00 0.00 45.56 2.29
2072 3642 7.094205 CCCATCAGTAGCTGTCTTTATTTTGTT 60.094 37.037 0.00 0.00 32.61 2.83
2146 3717 4.213482 GTGACACTCTTGTATTTGGTCCAC 59.787 45.833 0.00 0.00 35.47 4.02
2172 3826 4.379918 GGTTCTTCCAGCTGCATTCTTTAC 60.380 45.833 8.66 0.00 35.97 2.01
2231 3885 5.937540 TGTGGTGTAGGAATATTCAACTGTG 59.062 40.000 17.07 0.00 0.00 3.66
2232 3886 4.941263 TGGTGTAGGAATATTCAACTGTGC 59.059 41.667 17.07 0.00 0.00 4.57
2238 3892 5.003804 AGGAATATTCAACTGTGCGAACTT 58.996 37.500 17.07 0.00 0.00 2.66
2243 3897 3.878086 TCAACTGTGCGAACTTCATTC 57.122 42.857 0.00 0.00 0.00 2.67
2250 3904 2.096218 GTGCGAACTTCATTCAGTCACC 60.096 50.000 0.00 0.00 37.12 4.02
2262 3916 6.345298 TCATTCAGTCACCGATTATGCTTTA 58.655 36.000 0.00 0.00 0.00 1.85
2270 3924 8.184192 AGTCACCGATTATGCTTTATTGAAAAG 58.816 33.333 0.00 0.00 0.00 2.27
2307 3961 1.003118 ACTGCAGCCTTTATTGACCGA 59.997 47.619 15.27 0.00 0.00 4.69
2316 3970 3.371595 CCTTTATTGACCGACCCCTTCAT 60.372 47.826 0.00 0.00 0.00 2.57
2325 3979 0.253327 GACCCCTTCATGTCACCTCC 59.747 60.000 0.00 0.00 0.00 4.30
2328 3982 1.264749 CCCTTCATGTCACCTCCGGA 61.265 60.000 2.93 2.93 0.00 5.14
2364 4022 7.460751 GCTCTTTGCAAATTATCTTCCATTC 57.539 36.000 13.23 0.00 42.31 2.67
2509 4173 1.854280 AGGAGGAGGATCGTAGAAGGT 59.146 52.381 0.00 0.00 43.58 3.50
2537 4201 1.400846 CATCTTGCTGAGGATGCACAC 59.599 52.381 0.00 0.00 40.40 3.82
2619 4283 1.666311 GCGCTCATCGAGGGTATGTAC 60.666 57.143 0.00 0.00 43.22 2.90
2679 4343 0.805614 TTGGAGAAGAGAGCGTCGAG 59.194 55.000 0.00 0.00 0.00 4.04
2695 4359 0.811915 CGAGGATGACGAGGTGAGTT 59.188 55.000 0.00 0.00 0.00 3.01
2797 4461 1.176527 CACACCAGTAGCATTTGGGG 58.823 55.000 1.54 1.54 43.69 4.96
2850 4514 3.686016 TGAAAGTTTGGAGGCTCATACC 58.314 45.455 17.69 0.00 0.00 2.73
2919 4583 0.313987 CTCGCCAGCCATACGATACA 59.686 55.000 0.00 0.00 34.94 2.29
2991 4655 5.064071 GCAACTCCTCAACTTCTTACTATGC 59.936 44.000 0.00 0.00 0.00 3.14
2992 4656 6.166279 CAACTCCTCAACTTCTTACTATGCA 58.834 40.000 0.00 0.00 0.00 3.96
3009 4673 6.453943 ACTATGCAGTGATGATAGTCATGAC 58.546 40.000 18.47 18.47 40.56 3.06
3022 4686 6.878923 TGATAGTCATGACGGAACAAATTTCT 59.121 34.615 19.85 0.60 36.20 2.52
3164 4828 2.397549 GCATATTGGAGAATTTGCGGC 58.602 47.619 0.00 0.00 36.97 6.53
3230 4894 2.591753 CTGGGATGTGGATGCGGT 59.408 61.111 0.00 0.00 0.00 5.68
3231 4895 1.820906 CTGGGATGTGGATGCGGTG 60.821 63.158 0.00 0.00 0.00 4.94
3277 4941 3.261250 CAGAAGATGCCAGGTGCTT 57.739 52.632 0.00 0.00 42.00 3.91
3360 5024 2.496899 TCAGGATGAAGAGTTTGCCC 57.503 50.000 0.00 0.00 45.97 5.36
3421 5085 2.371179 GGAAGCATGGATCCTGATGAGA 59.629 50.000 14.23 0.00 32.75 3.27
3428 5092 2.507058 TGGATCCTGATGAGAACCCAAG 59.493 50.000 14.23 0.00 0.00 3.61
3468 5132 3.009033 TGCAGTTGGCTACTCACCTAAAT 59.991 43.478 0.00 0.00 45.15 1.40
3539 5203 7.716799 ATCCTGATACTAAATTTTGGTGCAA 57.283 32.000 8.26 0.00 0.00 4.08
3570 5234 5.591067 ACTGAGGATAAGAGAACTAGTTCGG 59.409 44.000 25.92 9.94 43.97 4.30
3572 5236 5.589452 TGAGGATAAGAGAACTAGTTCGGAC 59.411 44.000 25.92 20.72 43.97 4.79
3597 5264 1.146263 CTCCTTCGGCATACACCCC 59.854 63.158 0.00 0.00 0.00 4.95
3661 5328 1.802553 GTCCTATGTGGGGGCTAAGA 58.197 55.000 0.00 0.00 36.20 2.10
3720 5387 2.684843 GGAGCAAAGTGAGCTGCCG 61.685 63.158 0.00 0.00 43.61 5.69
3776 5443 6.458478 GCTGAAATTCCTGATGATGAAGACAG 60.458 42.308 0.00 0.00 0.00 3.51
3861 5528 3.800506 AGAAACAGAAACCACGTCGTAAG 59.199 43.478 0.00 0.00 0.00 2.34
3882 5549 2.485124 GGTCAGCAGGAGGAATCATCTG 60.485 54.545 0.00 0.00 0.00 2.90
3899 5566 1.269448 TCTGGCGCCAAGAAAAACATC 59.731 47.619 32.09 0.00 0.00 3.06
3902 5569 1.344226 GCGCCAAGAAAAACATCGGC 61.344 55.000 0.00 0.00 36.16 5.54
3910 5577 5.868801 CCAAGAAAAACATCGGCATAAATGT 59.131 36.000 0.00 0.00 37.71 2.71
3939 5606 2.223782 GCAAACACAAGTGCAAGGATGA 60.224 45.455 0.00 0.00 40.58 2.92
3941 5608 3.715628 AACACAAGTGCAAGGATGAAC 57.284 42.857 0.00 0.00 35.05 3.18
3943 5610 4.085357 ACACAAGTGCAAGGATGAACTA 57.915 40.909 0.00 0.00 45.22 2.24
3944 5611 4.655963 ACACAAGTGCAAGGATGAACTAT 58.344 39.130 0.00 0.00 45.22 2.12
3945 5612 5.804639 ACACAAGTGCAAGGATGAACTATA 58.195 37.500 0.00 0.00 45.22 1.31
3946 5613 6.418101 ACACAAGTGCAAGGATGAACTATAT 58.582 36.000 0.00 0.00 45.22 0.86
3947 5614 7.564793 ACACAAGTGCAAGGATGAACTATATA 58.435 34.615 0.00 0.00 45.22 0.86
3948 5615 8.213679 ACACAAGTGCAAGGATGAACTATATAT 58.786 33.333 0.00 0.00 45.22 0.86
3949 5616 8.501580 CACAAGTGCAAGGATGAACTATATATG 58.498 37.037 0.00 0.00 45.22 1.78
3987 5658 5.703130 GGTCAATAGGTCATTATTCTGCTCC 59.297 44.000 0.00 0.00 0.00 4.70
3998 5670 6.818644 TCATTATTCTGCTCCTGTGTTTACTC 59.181 38.462 0.00 0.00 0.00 2.59
4010 5682 6.154534 TCCTGTGTTTACTCATAGCTGTATGT 59.845 38.462 0.00 0.00 37.81 2.29
4011 5683 7.340999 TCCTGTGTTTACTCATAGCTGTATGTA 59.659 37.037 0.00 0.00 37.81 2.29
4012 5684 7.435488 CCTGTGTTTACTCATAGCTGTATGTAC 59.565 40.741 0.00 0.00 37.81 2.90
4013 5685 7.262772 TGTGTTTACTCATAGCTGTATGTACC 58.737 38.462 0.00 0.00 37.81 3.34
4036 5708 2.356125 GCCCATGTTACTGTGGAGATGT 60.356 50.000 8.50 0.00 37.72 3.06
4037 5709 3.118408 GCCCATGTTACTGTGGAGATGTA 60.118 47.826 8.50 0.00 37.72 2.29
4038 5710 4.625324 GCCCATGTTACTGTGGAGATGTAA 60.625 45.833 8.50 0.00 37.72 2.41
4039 5711 5.496556 CCCATGTTACTGTGGAGATGTAAA 58.503 41.667 8.50 0.00 37.72 2.01
4040 5712 5.943416 CCCATGTTACTGTGGAGATGTAAAA 59.057 40.000 8.50 0.00 37.72 1.52
4041 5713 6.603201 CCCATGTTACTGTGGAGATGTAAAAT 59.397 38.462 8.50 0.00 37.72 1.82
4042 5714 7.415541 CCCATGTTACTGTGGAGATGTAAAATG 60.416 40.741 8.50 0.00 39.62 2.32
4043 5715 6.494893 TGTTACTGTGGAGATGTAAAATGC 57.505 37.500 0.00 0.00 0.00 3.56
4044 5716 5.414454 TGTTACTGTGGAGATGTAAAATGCC 59.586 40.000 0.00 0.00 0.00 4.40
4045 5717 4.032960 ACTGTGGAGATGTAAAATGCCA 57.967 40.909 0.00 0.00 0.00 4.92
4046 5718 4.603131 ACTGTGGAGATGTAAAATGCCAT 58.397 39.130 0.00 0.00 0.00 4.40
4047 5719 4.641989 ACTGTGGAGATGTAAAATGCCATC 59.358 41.667 0.00 0.00 38.17 3.51
4048 5720 4.598022 TGTGGAGATGTAAAATGCCATCA 58.402 39.130 0.00 0.00 39.92 3.07
4049 5721 4.641541 TGTGGAGATGTAAAATGCCATCAG 59.358 41.667 0.00 0.00 39.92 2.90
4050 5722 4.641989 GTGGAGATGTAAAATGCCATCAGT 59.358 41.667 0.00 0.00 39.92 3.41
4051 5723 4.641541 TGGAGATGTAAAATGCCATCAGTG 59.358 41.667 0.00 0.00 39.92 3.66
4052 5724 4.883585 GGAGATGTAAAATGCCATCAGTGA 59.116 41.667 0.00 0.00 39.92 3.41
4053 5725 5.357878 GGAGATGTAAAATGCCATCAGTGAA 59.642 40.000 0.00 0.00 39.92 3.18
4054 5726 6.040166 GGAGATGTAAAATGCCATCAGTGAAT 59.960 38.462 0.00 0.00 39.92 2.57
4055 5727 7.229306 GGAGATGTAAAATGCCATCAGTGAATA 59.771 37.037 0.00 0.00 39.92 1.75
4056 5728 8.701908 AGATGTAAAATGCCATCAGTGAATAT 57.298 30.769 0.00 0.00 39.92 1.28
4057 5729 9.139734 AGATGTAAAATGCCATCAGTGAATATT 57.860 29.630 0.00 0.00 39.92 1.28
4058 5730 9.188588 GATGTAAAATGCCATCAGTGAATATTG 57.811 33.333 0.00 0.00 37.88 1.90
4059 5731 8.291191 TGTAAAATGCCATCAGTGAATATTGA 57.709 30.769 0.00 0.00 0.00 2.57
4060 5732 8.747471 TGTAAAATGCCATCAGTGAATATTGAA 58.253 29.630 0.00 0.00 0.00 2.69
4061 5733 9.023967 GTAAAATGCCATCAGTGAATATTGAAC 57.976 33.333 0.00 0.00 0.00 3.18
4062 5734 7.414222 AAATGCCATCAGTGAATATTGAACT 57.586 32.000 0.00 0.00 0.00 3.01
4063 5735 6.630444 ATGCCATCAGTGAATATTGAACTC 57.370 37.500 0.00 0.00 0.00 3.01
4064 5736 5.748402 TGCCATCAGTGAATATTGAACTCT 58.252 37.500 0.00 0.00 0.00 3.24
4065 5737 5.819379 TGCCATCAGTGAATATTGAACTCTC 59.181 40.000 0.00 0.00 0.00 3.20
4066 5738 6.054295 GCCATCAGTGAATATTGAACTCTCT 58.946 40.000 0.00 0.00 0.00 3.10
4067 5739 6.541641 GCCATCAGTGAATATTGAACTCTCTT 59.458 38.462 0.00 0.00 0.00 2.85
4068 5740 7.712639 GCCATCAGTGAATATTGAACTCTCTTA 59.287 37.037 0.00 0.00 0.00 2.10
4069 5741 9.039870 CCATCAGTGAATATTGAACTCTCTTAC 57.960 37.037 0.00 0.00 0.00 2.34
4070 5742 9.814899 CATCAGTGAATATTGAACTCTCTTACT 57.185 33.333 0.00 0.00 0.00 2.24
4071 5743 9.814899 ATCAGTGAATATTGAACTCTCTTACTG 57.185 33.333 0.00 0.00 33.79 2.74
4072 5744 7.761704 TCAGTGAATATTGAACTCTCTTACTGC 59.238 37.037 0.00 0.00 32.85 4.40
4073 5745 6.754209 AGTGAATATTGAACTCTCTTACTGCG 59.246 38.462 0.00 0.00 0.00 5.18
4074 5746 6.019479 GTGAATATTGAACTCTCTTACTGCGG 60.019 42.308 0.00 0.00 0.00 5.69
4097 5771 6.037172 CGGAGACAAGTCCATATTTTACCTTG 59.963 42.308 0.00 0.00 36.23 3.61
4110 5784 1.909700 TACCTTGCTCAGCCTTTTGG 58.090 50.000 0.00 0.00 44.18 3.28
4112 5786 1.144913 ACCTTGCTCAGCCTTTTGGTA 59.855 47.619 0.00 0.00 42.99 3.25
4126 5800 5.738783 GCCTTTTGGTAGAGTTCAAATGCAA 60.739 40.000 0.00 0.00 42.99 4.08
4161 5835 3.829886 ACAATCTTGTATTGCGTGGTG 57.170 42.857 0.00 0.00 40.16 4.17
4168 5842 1.752310 TATTGCGTGGTGGCCATGG 60.752 57.895 9.72 7.63 40.61 3.66
4169 5843 2.491770 TATTGCGTGGTGGCCATGGT 62.492 55.000 9.72 0.00 40.61 3.55
4172 5846 4.697756 CGTGGTGGCCATGGTCGT 62.698 66.667 9.72 0.00 36.92 4.34
4173 5847 2.282180 GTGGTGGCCATGGTCGTT 60.282 61.111 9.72 0.00 35.28 3.85
4174 5848 1.901464 GTGGTGGCCATGGTCGTTT 60.901 57.895 9.72 0.00 35.28 3.60
4175 5849 1.152652 TGGTGGCCATGGTCGTTTT 60.153 52.632 9.72 0.00 0.00 2.43
4176 5850 0.110678 TGGTGGCCATGGTCGTTTTA 59.889 50.000 9.72 0.00 0.00 1.52
4177 5851 0.808755 GGTGGCCATGGTCGTTTTAG 59.191 55.000 9.72 0.00 0.00 1.85
4178 5852 1.612199 GGTGGCCATGGTCGTTTTAGA 60.612 52.381 9.72 0.00 0.00 2.10
4179 5853 2.156098 GTGGCCATGGTCGTTTTAGAA 58.844 47.619 9.72 0.00 0.00 2.10
4180 5854 2.161609 GTGGCCATGGTCGTTTTAGAAG 59.838 50.000 9.72 0.00 0.00 2.85
4181 5855 1.743394 GGCCATGGTCGTTTTAGAAGG 59.257 52.381 14.67 0.00 0.00 3.46
4182 5856 1.132453 GCCATGGTCGTTTTAGAAGGC 59.868 52.381 14.67 0.00 0.00 4.35
4183 5857 2.711542 CCATGGTCGTTTTAGAAGGCT 58.288 47.619 2.57 0.00 0.00 4.58
4184 5858 3.081804 CCATGGTCGTTTTAGAAGGCTT 58.918 45.455 2.57 0.00 0.00 4.35
4185 5859 3.127030 CCATGGTCGTTTTAGAAGGCTTC 59.873 47.826 19.53 19.53 0.00 3.86
4186 5860 3.764237 TGGTCGTTTTAGAAGGCTTCT 57.236 42.857 30.67 30.67 43.72 2.85
4187 5861 3.660865 TGGTCGTTTTAGAAGGCTTCTC 58.339 45.455 31.69 16.98 41.14 2.87
4188 5862 3.001414 GGTCGTTTTAGAAGGCTTCTCC 58.999 50.000 31.69 20.67 41.14 3.71
4189 5863 3.001414 GTCGTTTTAGAAGGCTTCTCCC 58.999 50.000 31.69 16.72 41.14 4.30
4190 5864 2.904434 TCGTTTTAGAAGGCTTCTCCCT 59.096 45.455 31.69 12.26 41.14 4.20
4191 5865 3.056035 TCGTTTTAGAAGGCTTCTCCCTC 60.056 47.826 31.69 19.02 41.14 4.30
4192 5866 3.263261 GTTTTAGAAGGCTTCTCCCTCG 58.737 50.000 31.69 0.00 41.14 4.63
4193 5867 0.824759 TTAGAAGGCTTCTCCCTCGC 59.175 55.000 31.69 1.31 41.14 5.03
4194 5868 1.384989 TAGAAGGCTTCTCCCTCGCG 61.385 60.000 31.69 0.00 41.14 5.87
4195 5869 4.459089 AAGGCTTCTCCCTCGCGC 62.459 66.667 0.00 0.00 32.93 6.86
4218 5892 4.545706 GCCGGCCATGTCATCCGA 62.546 66.667 18.11 0.00 45.53 4.55
4219 5893 2.588877 CCGGCCATGTCATCCGAC 60.589 66.667 13.18 0.00 45.53 4.79
4220 5894 2.961721 CGGCCATGTCATCCGACG 60.962 66.667 2.24 0.00 45.80 5.12
4221 5895 3.272334 GGCCATGTCATCCGACGC 61.272 66.667 0.00 0.00 45.80 5.19
4222 5896 3.272334 GCCATGTCATCCGACGCC 61.272 66.667 0.00 0.00 45.80 5.68
4223 5897 2.186644 CCATGTCATCCGACGCCA 59.813 61.111 0.00 0.00 45.80 5.69
4224 5898 1.227645 CCATGTCATCCGACGCCAT 60.228 57.895 0.00 0.00 45.80 4.40
4225 5899 0.033366 CCATGTCATCCGACGCCATA 59.967 55.000 0.00 0.00 45.80 2.74
4226 5900 1.422388 CATGTCATCCGACGCCATAG 58.578 55.000 0.00 0.00 45.80 2.23
4227 5901 0.319900 ATGTCATCCGACGCCATAGC 60.320 55.000 0.00 0.00 45.80 2.97
4228 5902 1.067416 GTCATCCGACGCCATAGCA 59.933 57.895 0.00 0.00 39.83 3.49
4229 5903 0.319900 GTCATCCGACGCCATAGCAT 60.320 55.000 0.00 0.00 39.83 3.79
4230 5904 0.319813 TCATCCGACGCCATAGCATG 60.320 55.000 0.00 0.00 39.83 4.06
4231 5905 0.319813 CATCCGACGCCATAGCATGA 60.320 55.000 0.00 0.00 39.83 3.07
4232 5906 0.037882 ATCCGACGCCATAGCATGAG 60.038 55.000 0.00 0.00 39.83 2.90
4233 5907 2.313172 CCGACGCCATAGCATGAGC 61.313 63.158 0.00 0.00 39.83 4.26
4235 5909 2.947890 GACGCCATAGCATGAGCGC 61.948 63.158 20.32 0.00 46.50 5.92
4250 5924 3.429141 CGCCTGCTGCTGTTGGAG 61.429 66.667 0.00 0.00 38.05 3.86
4251 5925 2.033141 GCCTGCTGCTGTTGGAGA 59.967 61.111 0.00 0.00 36.87 3.71
4252 5926 1.378250 GCCTGCTGCTGTTGGAGAT 60.378 57.895 0.00 0.00 36.87 2.75
4253 5927 1.375098 GCCTGCTGCTGTTGGAGATC 61.375 60.000 0.00 0.00 36.87 2.75
4254 5928 0.035725 CCTGCTGCTGTTGGAGATCA 60.036 55.000 0.00 0.00 33.10 2.92
4255 5929 1.085091 CTGCTGCTGTTGGAGATCAC 58.915 55.000 0.00 0.00 33.10 3.06
4256 5930 0.689055 TGCTGCTGTTGGAGATCACT 59.311 50.000 0.00 0.00 33.10 3.41
4257 5931 1.901833 TGCTGCTGTTGGAGATCACTA 59.098 47.619 0.00 0.00 33.10 2.74
4258 5932 2.302733 TGCTGCTGTTGGAGATCACTAA 59.697 45.455 0.00 0.00 33.10 2.24
4259 5933 2.675348 GCTGCTGTTGGAGATCACTAAC 59.325 50.000 11.55 11.55 33.10 2.34
4260 5934 3.866066 GCTGCTGTTGGAGATCACTAACA 60.866 47.826 18.27 18.27 38.52 2.41
4263 5937 4.199432 CTGTTGGAGATCACTAACAGCT 57.801 45.455 27.28 0.00 46.25 4.24
4264 5938 4.573900 CTGTTGGAGATCACTAACAGCTT 58.426 43.478 27.28 0.00 46.25 3.74
4265 5939 4.569943 TGTTGGAGATCACTAACAGCTTC 58.430 43.478 16.08 0.00 36.60 3.86
4266 5940 4.284490 TGTTGGAGATCACTAACAGCTTCT 59.716 41.667 16.08 0.00 36.60 2.85
4267 5941 4.727507 TGGAGATCACTAACAGCTTCTC 57.272 45.455 0.00 0.07 0.00 2.87
4268 5942 3.449018 TGGAGATCACTAACAGCTTCTCC 59.551 47.826 16.63 16.63 46.13 3.71
4269 5943 3.704061 GGAGATCACTAACAGCTTCTCCT 59.296 47.826 16.32 0.00 43.77 3.69
4270 5944 4.161377 GGAGATCACTAACAGCTTCTCCTT 59.839 45.833 16.32 0.00 43.77 3.36
4271 5945 5.337975 GGAGATCACTAACAGCTTCTCCTTT 60.338 44.000 16.32 0.00 43.77 3.11
4272 5946 6.120507 AGATCACTAACAGCTTCTCCTTTT 57.879 37.500 0.00 0.00 0.00 2.27
4273 5947 6.169800 AGATCACTAACAGCTTCTCCTTTTC 58.830 40.000 0.00 0.00 0.00 2.29
4274 5948 5.290493 TCACTAACAGCTTCTCCTTTTCA 57.710 39.130 0.00 0.00 0.00 2.69
4275 5949 5.057149 TCACTAACAGCTTCTCCTTTTCAC 58.943 41.667 0.00 0.00 0.00 3.18
4276 5950 4.816385 CACTAACAGCTTCTCCTTTTCACA 59.184 41.667 0.00 0.00 0.00 3.58
4277 5951 5.296780 CACTAACAGCTTCTCCTTTTCACAA 59.703 40.000 0.00 0.00 0.00 3.33
4278 5952 4.639135 AACAGCTTCTCCTTTTCACAAC 57.361 40.909 0.00 0.00 0.00 3.32
4279 5953 2.952310 ACAGCTTCTCCTTTTCACAACC 59.048 45.455 0.00 0.00 0.00 3.77
4280 5954 2.031682 CAGCTTCTCCTTTTCACAACCG 60.032 50.000 0.00 0.00 0.00 4.44
4281 5955 1.335051 GCTTCTCCTTTTCACAACCGC 60.335 52.381 0.00 0.00 0.00 5.68
4282 5956 2.222027 CTTCTCCTTTTCACAACCGCT 58.778 47.619 0.00 0.00 0.00 5.52
4283 5957 2.341846 TCTCCTTTTCACAACCGCTT 57.658 45.000 0.00 0.00 0.00 4.68
4284 5958 2.218603 TCTCCTTTTCACAACCGCTTC 58.781 47.619 0.00 0.00 0.00 3.86
4285 5959 1.946768 CTCCTTTTCACAACCGCTTCA 59.053 47.619 0.00 0.00 0.00 3.02
4286 5960 1.673920 TCCTTTTCACAACCGCTTCAC 59.326 47.619 0.00 0.00 0.00 3.18
4287 5961 1.403679 CCTTTTCACAACCGCTTCACA 59.596 47.619 0.00 0.00 0.00 3.58
4288 5962 2.541588 CCTTTTCACAACCGCTTCACAG 60.542 50.000 0.00 0.00 0.00 3.66
4289 5963 0.380378 TTTCACAACCGCTTCACAGC 59.620 50.000 0.00 0.00 43.41 4.40
4290 5964 0.463654 TTCACAACCGCTTCACAGCT 60.464 50.000 0.00 0.00 44.85 4.24
4291 5965 0.880278 TCACAACCGCTTCACAGCTC 60.880 55.000 0.00 0.00 44.85 4.09
4292 5966 0.882042 CACAACCGCTTCACAGCTCT 60.882 55.000 0.00 0.00 44.85 4.09
4293 5967 0.601311 ACAACCGCTTCACAGCTCTC 60.601 55.000 0.00 0.00 44.85 3.20
4294 5968 1.373497 AACCGCTTCACAGCTCTCG 60.373 57.895 0.00 0.00 44.85 4.04
4295 5969 2.507992 CCGCTTCACAGCTCTCGG 60.508 66.667 0.00 0.00 44.85 4.63
4296 5970 3.184683 CGCTTCACAGCTCTCGGC 61.185 66.667 0.00 0.00 44.85 5.54
4297 5971 2.817396 GCTTCACAGCTCTCGGCC 60.817 66.667 0.00 0.00 43.51 6.13
4298 5972 2.659016 CTTCACAGCTCTCGGCCA 59.341 61.111 2.24 0.00 43.05 5.36
4299 5973 1.220206 CTTCACAGCTCTCGGCCAT 59.780 57.895 2.24 0.00 43.05 4.40
4300 5974 0.392193 CTTCACAGCTCTCGGCCATT 60.392 55.000 2.24 0.00 43.05 3.16
4301 5975 0.036732 TTCACAGCTCTCGGCCATTT 59.963 50.000 2.24 0.00 43.05 2.32
4302 5976 0.391661 TCACAGCTCTCGGCCATTTC 60.392 55.000 2.24 0.00 43.05 2.17
4303 5977 0.392193 CACAGCTCTCGGCCATTTCT 60.392 55.000 2.24 0.00 43.05 2.52
4304 5978 0.326264 ACAGCTCTCGGCCATTTCTT 59.674 50.000 2.24 0.00 43.05 2.52
4305 5979 0.731417 CAGCTCTCGGCCATTTCTTG 59.269 55.000 2.24 0.00 43.05 3.02
4306 5980 1.028868 AGCTCTCGGCCATTTCTTGC 61.029 55.000 2.24 0.00 43.05 4.01
4307 5981 1.028868 GCTCTCGGCCATTTCTTGCT 61.029 55.000 2.24 0.00 34.27 3.91
4308 5982 1.012841 CTCTCGGCCATTTCTTGCTC 58.987 55.000 2.24 0.00 0.00 4.26
4309 5983 0.324614 TCTCGGCCATTTCTTGCTCA 59.675 50.000 2.24 0.00 0.00 4.26
4310 5984 0.731417 CTCGGCCATTTCTTGCTCAG 59.269 55.000 2.24 0.00 0.00 3.35
4311 5985 1.138247 CGGCCATTTCTTGCTCAGC 59.862 57.895 2.24 0.00 0.00 4.26
4312 5986 1.310933 CGGCCATTTCTTGCTCAGCT 61.311 55.000 2.24 0.00 0.00 4.24
4313 5987 0.893447 GGCCATTTCTTGCTCAGCTT 59.107 50.000 0.00 0.00 0.00 3.74
4314 5988 1.135170 GGCCATTTCTTGCTCAGCTTC 60.135 52.381 0.00 0.00 0.00 3.86
4315 5989 1.542915 GCCATTTCTTGCTCAGCTTCA 59.457 47.619 0.00 0.00 0.00 3.02
4316 5990 2.415625 GCCATTTCTTGCTCAGCTTCAG 60.416 50.000 0.00 0.00 0.00 3.02
4317 5991 3.079578 CCATTTCTTGCTCAGCTTCAGA 58.920 45.455 0.00 0.00 0.00 3.27
4318 5992 3.119919 CCATTTCTTGCTCAGCTTCAGAC 60.120 47.826 0.00 0.00 0.00 3.51
4319 5993 3.482156 TTTCTTGCTCAGCTTCAGACT 57.518 42.857 0.00 0.00 0.00 3.24
4320 5994 2.739885 TCTTGCTCAGCTTCAGACTC 57.260 50.000 0.00 0.00 0.00 3.36
4321 5995 2.246469 TCTTGCTCAGCTTCAGACTCT 58.754 47.619 0.00 0.00 0.00 3.24
4322 5996 2.632028 TCTTGCTCAGCTTCAGACTCTT 59.368 45.455 0.00 0.00 0.00 2.85
4323 5997 2.739885 TGCTCAGCTTCAGACTCTTC 57.260 50.000 0.00 0.00 0.00 2.87
4324 5998 1.966354 TGCTCAGCTTCAGACTCTTCA 59.034 47.619 0.00 0.00 0.00 3.02
4325 5999 2.288702 TGCTCAGCTTCAGACTCTTCAC 60.289 50.000 0.00 0.00 0.00 3.18
4326 6000 2.594321 CTCAGCTTCAGACTCTTCACG 58.406 52.381 0.00 0.00 0.00 4.35
4327 6001 1.066914 CAGCTTCAGACTCTTCACGC 58.933 55.000 0.00 0.00 0.00 5.34
4328 6002 0.387878 AGCTTCAGACTCTTCACGCG 60.388 55.000 3.53 3.53 0.00 6.01
4329 6003 1.950098 GCTTCAGACTCTTCACGCGC 61.950 60.000 5.73 0.00 0.00 6.86
4330 6004 0.387878 CTTCAGACTCTTCACGCGCT 60.388 55.000 5.73 0.00 0.00 5.92
4331 6005 0.032130 TTCAGACTCTTCACGCGCTT 59.968 50.000 5.73 0.00 0.00 4.68
4332 6006 0.387367 TCAGACTCTTCACGCGCTTC 60.387 55.000 5.73 0.00 0.00 3.86
4333 6007 1.080434 AGACTCTTCACGCGCTTCC 60.080 57.895 5.73 0.00 0.00 3.46
4334 6008 1.080434 GACTCTTCACGCGCTTCCT 60.080 57.895 5.73 0.00 0.00 3.36
4335 6009 1.073768 GACTCTTCACGCGCTTCCTC 61.074 60.000 5.73 0.00 0.00 3.71
4336 6010 1.214062 CTCTTCACGCGCTTCCTCT 59.786 57.895 5.73 0.00 0.00 3.69
4337 6011 1.075425 CTCTTCACGCGCTTCCTCTG 61.075 60.000 5.73 0.00 0.00 3.35
4338 6012 1.080501 CTTCACGCGCTTCCTCTGA 60.081 57.895 5.73 0.00 0.00 3.27
4339 6013 1.347817 CTTCACGCGCTTCCTCTGAC 61.348 60.000 5.73 0.00 0.00 3.51
4340 6014 1.806461 TTCACGCGCTTCCTCTGACT 61.806 55.000 5.73 0.00 0.00 3.41
4341 6015 1.803519 CACGCGCTTCCTCTGACTC 60.804 63.158 5.73 0.00 0.00 3.36
4342 6016 2.202676 CGCGCTTCCTCTGACTCC 60.203 66.667 5.56 0.00 0.00 3.85
4343 6017 2.973899 GCGCTTCCTCTGACTCCA 59.026 61.111 0.00 0.00 0.00 3.86
4344 6018 1.519719 GCGCTTCCTCTGACTCCAT 59.480 57.895 0.00 0.00 0.00 3.41
4345 6019 0.809241 GCGCTTCCTCTGACTCCATG 60.809 60.000 0.00 0.00 0.00 3.66
4346 6020 0.820226 CGCTTCCTCTGACTCCATGA 59.180 55.000 0.00 0.00 0.00 3.07
4347 6021 1.411977 CGCTTCCTCTGACTCCATGAT 59.588 52.381 0.00 0.00 0.00 2.45
4348 6022 2.545532 CGCTTCCTCTGACTCCATGATC 60.546 54.545 0.00 0.00 0.00 2.92
4349 6023 2.433604 GCTTCCTCTGACTCCATGATCA 59.566 50.000 0.00 0.00 0.00 2.92
4350 6024 3.118482 GCTTCCTCTGACTCCATGATCAA 60.118 47.826 0.00 0.00 0.00 2.57
4351 6025 4.440880 CTTCCTCTGACTCCATGATCAAC 58.559 47.826 0.00 0.00 0.00 3.18
4352 6026 3.444029 TCCTCTGACTCCATGATCAACA 58.556 45.455 0.00 0.00 0.00 3.33
4353 6027 3.840078 TCCTCTGACTCCATGATCAACAA 59.160 43.478 0.00 0.00 0.00 2.83
4354 6028 3.937706 CCTCTGACTCCATGATCAACAAC 59.062 47.826 0.00 0.00 0.00 3.32
4355 6029 4.323333 CCTCTGACTCCATGATCAACAACT 60.323 45.833 0.00 0.00 0.00 3.16
4356 6030 4.825422 TCTGACTCCATGATCAACAACTC 58.175 43.478 0.00 0.00 0.00 3.01
4357 6031 3.937706 CTGACTCCATGATCAACAACTCC 59.062 47.826 0.00 0.00 0.00 3.85
4358 6032 3.327464 TGACTCCATGATCAACAACTCCA 59.673 43.478 0.00 0.00 0.00 3.86
4359 6033 3.937706 GACTCCATGATCAACAACTCCAG 59.062 47.826 0.00 0.00 0.00 3.86
4360 6034 3.328931 ACTCCATGATCAACAACTCCAGT 59.671 43.478 0.00 0.00 0.00 4.00
4361 6035 3.937706 CTCCATGATCAACAACTCCAGTC 59.062 47.826 0.00 0.00 0.00 3.51
4362 6036 2.674852 CCATGATCAACAACTCCAGTCG 59.325 50.000 0.00 0.00 0.00 4.18
4363 6037 3.329386 CATGATCAACAACTCCAGTCGT 58.671 45.455 0.00 0.00 0.00 4.34
4364 6038 4.494484 CATGATCAACAACTCCAGTCGTA 58.506 43.478 0.00 0.00 0.00 3.43
4365 6039 4.801330 TGATCAACAACTCCAGTCGTAT 57.199 40.909 0.00 0.00 0.00 3.06
4366 6040 4.744570 TGATCAACAACTCCAGTCGTATC 58.255 43.478 0.00 0.00 0.00 2.24
4367 6041 4.462834 TGATCAACAACTCCAGTCGTATCT 59.537 41.667 0.00 0.00 0.00 1.98
4368 6042 4.436242 TCAACAACTCCAGTCGTATCTC 57.564 45.455 0.00 0.00 0.00 2.75
4369 6043 3.192844 TCAACAACTCCAGTCGTATCTCC 59.807 47.826 0.00 0.00 0.00 3.71
4370 6044 1.743958 ACAACTCCAGTCGTATCTCCG 59.256 52.381 0.00 0.00 0.00 4.63
4371 6045 1.743958 CAACTCCAGTCGTATCTCCGT 59.256 52.381 0.00 0.00 0.00 4.69
4372 6046 2.941064 CAACTCCAGTCGTATCTCCGTA 59.059 50.000 0.00 0.00 0.00 4.02
4373 6047 2.836262 ACTCCAGTCGTATCTCCGTAG 58.164 52.381 0.00 0.00 0.00 3.51
4374 6048 2.170187 ACTCCAGTCGTATCTCCGTAGT 59.830 50.000 0.00 0.00 0.00 2.73
4375 6049 2.544686 CTCCAGTCGTATCTCCGTAGTG 59.455 54.545 0.00 0.00 0.00 2.74
4376 6050 1.602851 CCAGTCGTATCTCCGTAGTGG 59.397 57.143 0.00 0.00 40.09 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.813753 TTGCTCCGTGCTAATCCGC 60.814 57.895 0.00 0.00 43.37 5.54
39 40 1.064003 TATCCCTTGCCACACAGTGT 58.936 50.000 0.00 0.00 0.00 3.55
265 266 1.222115 GACACGACCAACACTCTGCC 61.222 60.000 0.00 0.00 0.00 4.85
291 292 1.802960 CTCAAGACATGTCAGCACCAC 59.197 52.381 27.02 0.00 0.00 4.16
383 391 5.974158 CAGGCTATAGAAATATCGTGGATCG 59.026 44.000 3.21 0.00 41.41 3.69
448 456 2.544267 GACAGAAAACTGAACCGACCTG 59.456 50.000 0.00 0.00 0.00 4.00
509 573 5.890985 TGAAACTGGAGAAAGGACAAATCAA 59.109 36.000 0.00 0.00 0.00 2.57
757 832 0.749454 CCTCTTGTGCCTGCATACCC 60.749 60.000 0.00 0.00 0.00 3.69
779 856 0.239347 GTGAGGACACATGCAACAGC 59.761 55.000 0.00 0.00 45.32 4.40
800 877 3.934579 TCATCATCACACAAATCCACGAG 59.065 43.478 0.00 0.00 0.00 4.18
805 882 3.684305 TCACGTCATCATCACACAAATCC 59.316 43.478 0.00 0.00 0.00 3.01
838 931 1.633852 GCAAGCAGCAGAAGAGGTCG 61.634 60.000 0.00 0.00 44.79 4.79
839 985 2.169842 GCAAGCAGCAGAAGAGGTC 58.830 57.895 0.00 0.00 44.79 3.85
887 1033 6.315091 TCTCCTGAATCAGTACGCTATAAC 57.685 41.667 9.63 0.00 0.00 1.89
943 1298 4.458295 TCCAGAGCGGCATTATACTAGTAC 59.542 45.833 4.31 0.00 33.14 2.73
949 1304 1.338200 CCCTCCAGAGCGGCATTATAC 60.338 57.143 1.45 0.00 33.14 1.47
953 1308 2.688666 TCCCTCCAGAGCGGCATT 60.689 61.111 1.45 0.00 33.14 3.56
954 1309 2.961559 ATCTCCCTCCAGAGCGGCAT 62.962 60.000 1.45 0.00 33.66 4.40
955 1310 3.686098 ATCTCCCTCCAGAGCGGCA 62.686 63.158 1.45 0.00 33.66 5.69
959 1314 4.716025 TGGATCTCCCTCCAGAGC 57.284 61.111 0.00 0.00 40.43 4.09
1027 1684 6.127479 ACACTCCTAGCTTGAAGAAGTATCAG 60.127 42.308 0.00 0.00 0.00 2.90
1028 1685 5.717178 ACACTCCTAGCTTGAAGAAGTATCA 59.283 40.000 0.00 0.00 0.00 2.15
1032 1689 6.613153 AATACACTCCTAGCTTGAAGAAGT 57.387 37.500 0.00 0.00 0.00 3.01
1050 1707 9.974980 GACCCTTCTTTTTCAAATACAAATACA 57.025 29.630 0.00 0.00 0.00 2.29
1080 1737 5.163612 GCAGAGGATTGTTGGTAATTCTTCC 60.164 44.000 0.00 0.00 0.00 3.46
1097 1754 1.552337 AGAAATGAGAAGCGCAGAGGA 59.448 47.619 11.47 0.00 0.00 3.71
1139 1797 1.390123 CTGTAATCGTGCGGTGTTCAG 59.610 52.381 0.00 0.00 0.00 3.02
1141 1799 1.126113 CACTGTAATCGTGCGGTGTTC 59.874 52.381 0.00 0.00 40.70 3.18
1143 1801 0.315886 TCACTGTAATCGTGCGGTGT 59.684 50.000 4.10 0.00 44.57 4.16
1144 1802 0.713883 GTCACTGTAATCGTGCGGTG 59.286 55.000 0.00 0.00 45.35 4.94
1145 1803 0.601558 AGTCACTGTAATCGTGCGGT 59.398 50.000 0.00 0.00 32.54 5.68
1146 1804 0.992072 CAGTCACTGTAATCGTGCGG 59.008 55.000 0.00 0.00 32.54 5.69
1147 1805 1.977188 TCAGTCACTGTAATCGTGCG 58.023 50.000 4.28 0.00 32.61 5.34
1148 1806 6.695713 TGTATAATCAGTCACTGTAATCGTGC 59.304 38.462 4.28 0.00 32.61 5.34
1149 1807 8.628882 TTGTATAATCAGTCACTGTAATCGTG 57.371 34.615 4.28 0.00 32.61 4.35
1150 1808 8.683615 TCTTGTATAATCAGTCACTGTAATCGT 58.316 33.333 4.28 0.00 32.61 3.73
1151 1809 9.175060 CTCTTGTATAATCAGTCACTGTAATCG 57.825 37.037 4.28 0.00 32.61 3.34
1249 1988 9.920946 AAGAAATTTAGGCCATCTTATTACAGA 57.079 29.630 5.01 0.00 0.00 3.41
1273 2121 5.379706 AGACCATAATGGGAAGGAAGAAG 57.620 43.478 0.00 0.00 43.37 2.85
1384 2416 2.203470 TCATGCATGCTCTGTTTCCA 57.797 45.000 22.25 0.00 0.00 3.53
1536 3079 8.262227 ACGGAGATTATTCAGTTATGGTTGTAA 58.738 33.333 0.00 0.00 0.00 2.41
1537 3080 7.709182 CACGGAGATTATTCAGTTATGGTTGTA 59.291 37.037 0.00 0.00 0.00 2.41
1564 3107 3.181501 CGACAGGTTGCTTGTTTTTCAGA 60.182 43.478 0.00 0.00 0.00 3.27
1581 3125 4.102035 TCAGATGAACTCATGACGACAG 57.898 45.455 0.00 0.00 36.57 3.51
1620 3164 4.134563 TGTTTCAAAGAGGCAGTAAGGAC 58.865 43.478 0.00 0.00 0.00 3.85
1684 3233 2.779755 TGGTCGAAGGTGCATTGTAT 57.220 45.000 0.00 0.00 0.00 2.29
1699 3248 5.123227 TGCAAAGCCTACATAGTATTGGTC 58.877 41.667 0.00 0.00 0.00 4.02
1750 3299 7.567458 ACTATTAAGCACCCGGTAAGAATAAA 58.433 34.615 0.00 0.00 0.00 1.40
1761 3310 3.387050 AGGGAGTAACTATTAAGCACCCG 59.613 47.826 0.00 0.00 39.67 5.28
1862 3411 3.333029 AACAAATTTAGCACCCATGGC 57.667 42.857 6.09 0.00 0.00 4.40
1914 3463 6.703165 GGGCATTTTCCTGAACAATATCAATC 59.297 38.462 0.00 0.00 0.00 2.67
1919 3468 5.662208 TCATGGGCATTTTCCTGAACAATAT 59.338 36.000 0.00 0.00 0.00 1.28
1931 3480 2.498481 CACAGGTCATCATGGGCATTTT 59.502 45.455 0.00 0.00 0.00 1.82
1967 3537 5.583854 CACTGCATACTCTTACTGCAAAGAT 59.416 40.000 1.38 0.00 44.59 2.40
1969 3539 4.931601 TCACTGCATACTCTTACTGCAAAG 59.068 41.667 0.00 0.00 44.59 2.77
2002 3572 5.047377 GCTCACCAACCAAATAAGATTTCCA 60.047 40.000 0.00 0.00 0.00 3.53
2008 3578 3.517296 TGGCTCACCAACCAAATAAGA 57.483 42.857 0.00 0.00 45.37 2.10
2042 3612 5.543507 AAAGACAGCTACTGATGGGATAG 57.456 43.478 0.78 0.00 35.18 2.08
2072 3642 5.900425 TTTGTGCAGATGAGCAAAAAGTTA 58.100 33.333 0.45 0.00 44.46 2.24
2231 3885 1.126846 CGGTGACTGAATGAAGTTCGC 59.873 52.381 0.00 0.00 39.80 4.70
2232 3886 2.672714 TCGGTGACTGAATGAAGTTCG 58.327 47.619 0.00 0.00 39.80 3.95
2238 3892 4.406648 AGCATAATCGGTGACTGAATGA 57.593 40.909 9.64 0.00 0.00 2.57
2243 3897 6.603237 TCAATAAAGCATAATCGGTGACTG 57.397 37.500 0.00 0.00 0.00 3.51
2250 3904 8.961092 CATGACCTTTTCAATAAAGCATAATCG 58.039 33.333 0.00 0.00 37.92 3.34
2262 3916 4.410099 TCCAGAAGCATGACCTTTTCAAT 58.590 39.130 0.00 0.00 37.92 2.57
2270 3924 2.354259 CAGTCTTCCAGAAGCATGACC 58.646 52.381 0.00 0.00 38.28 4.02
2307 3961 1.553690 CGGAGGTGACATGAAGGGGT 61.554 60.000 0.00 0.00 0.00 4.95
2325 3979 1.016130 AGAGCAGCAACACGATTCCG 61.016 55.000 0.00 0.00 42.50 4.30
2328 3982 1.335324 GCAAAGAGCAGCAACACGATT 60.335 47.619 0.00 0.00 44.79 3.34
2364 4022 1.153289 CTCCCTGGGAGCAATGACG 60.153 63.158 28.90 4.84 43.29 4.35
2440 4104 2.363683 CAGGAAAGAGATGAACCTGCC 58.636 52.381 0.00 0.00 40.90 4.85
2537 4201 1.532868 CCTCTGCTTCTTCAACAACGG 59.467 52.381 0.00 0.00 0.00 4.44
2619 4283 1.837439 TCCAGCATGTAGTACCCAAGG 59.163 52.381 0.00 0.00 0.00 3.61
2679 4343 2.287668 CCGATAACTCACCTCGTCATCC 60.288 54.545 0.00 0.00 0.00 3.51
2751 4415 2.030946 CGTTATAGAAGCAGCAACAGCC 59.969 50.000 0.00 0.00 0.00 4.85
2797 4461 1.734388 AACTTTGTTGTGCTCCCGGC 61.734 55.000 0.00 0.00 42.22 6.13
2850 4514 4.676546 TCACAAACTCTCTCATATCTGCG 58.323 43.478 0.00 0.00 0.00 5.18
2991 4655 4.574599 TCCGTCATGACTATCATCACTG 57.425 45.455 22.95 3.90 34.28 3.66
2992 4656 4.402474 TGTTCCGTCATGACTATCATCACT 59.598 41.667 22.95 0.00 34.28 3.41
3009 4673 3.855689 AGGATGCAGAAATTTGTTCCG 57.144 42.857 0.00 0.00 31.70 4.30
3022 4686 3.593834 CGATGATCGGAAGGATGCA 57.406 52.632 7.00 0.00 36.00 3.96
3150 4814 0.605319 AGTTCGCCGCAAATTCTCCA 60.605 50.000 0.00 0.00 0.00 3.86
3230 4894 1.198094 TCGGAAGTTCTCCCATGCCA 61.198 55.000 2.25 0.00 41.87 4.92
3231 4895 0.181350 ATCGGAAGTTCTCCCATGCC 59.819 55.000 2.25 0.00 41.87 4.40
3240 4904 0.659957 GCAGGCATGATCGGAAGTTC 59.340 55.000 0.62 0.00 0.00 3.01
3277 4941 6.821665 GTGCCTATCACTACAATTTTACTCCA 59.178 38.462 0.00 0.00 42.38 3.86
3302 4966 5.865552 CCCATTTTAGCAACTTGATCTGTTG 59.134 40.000 20.25 20.25 45.23 3.33
3421 5085 1.004044 CAGAGATGCCAGTCTTGGGTT 59.996 52.381 0.00 0.00 45.16 4.11
3428 5092 1.964552 CATTCCCAGAGATGCCAGTC 58.035 55.000 0.00 0.00 0.00 3.51
3468 5132 6.855763 ATATTTGCACCAAGAAAAGATCCA 57.144 33.333 0.00 0.00 0.00 3.41
3539 5203 7.726033 AGTTCTCTTATCCTCAGTAACATGT 57.274 36.000 0.00 0.00 0.00 3.21
3597 5264 3.299340 TTTCTCTCGAAAAGGTCCTCG 57.701 47.619 0.00 0.00 36.26 4.63
3661 5328 3.016736 CGTAAGCCCAACATCCTTGAAT 58.983 45.455 0.00 0.00 0.00 2.57
3720 5387 3.374745 CAGTTGTTGCCATGTCAGTTTC 58.625 45.455 0.00 0.00 0.00 2.78
3776 5443 1.617850 TCCATGCCAACACATCAAACC 59.382 47.619 0.00 0.00 0.00 3.27
3861 5528 1.767681 AGATGATTCCTCCTGCTGACC 59.232 52.381 0.00 0.00 0.00 4.02
3882 5549 0.732538 CCGATGTTTTTCTTGGCGCC 60.733 55.000 22.73 22.73 0.00 6.53
3899 5566 4.566545 TGCCAGATTAACATTTATGCCG 57.433 40.909 0.00 0.00 0.00 5.69
3902 5569 8.531622 TTGTGTTTGCCAGATTAACATTTATG 57.468 30.769 0.00 0.00 34.63 1.90
3910 5577 3.382865 TGCACTTGTGTTTGCCAGATTAA 59.617 39.130 2.61 0.00 38.00 1.40
3946 5613 9.937876 CCTATTGACCTATAGGATAAGGACATA 57.062 37.037 26.01 8.36 46.81 2.29
3947 5614 8.410623 ACCTATTGACCTATAGGATAAGGACAT 58.589 37.037 26.01 0.00 46.81 3.06
3948 5615 7.776745 ACCTATTGACCTATAGGATAAGGACA 58.223 38.462 26.01 1.68 46.81 4.02
3949 5616 7.894364 TGACCTATTGACCTATAGGATAAGGAC 59.106 40.741 26.01 20.15 46.81 3.85
3981 5652 3.868077 GCTATGAGTAAACACAGGAGCAG 59.132 47.826 10.37 0.00 33.10 4.24
3983 5654 3.868077 CAGCTATGAGTAAACACAGGAGC 59.132 47.826 8.31 8.31 33.06 4.70
3987 5658 7.435488 GGTACATACAGCTATGAGTAAACACAG 59.565 40.741 3.45 0.00 34.77 3.66
3998 5670 2.368548 TGGGCAGGTACATACAGCTATG 59.631 50.000 0.00 0.00 36.54 2.23
4010 5682 1.280710 CCACAGTAACATGGGCAGGTA 59.719 52.381 0.00 0.00 31.83 3.08
4011 5683 0.038166 CCACAGTAACATGGGCAGGT 59.962 55.000 0.00 0.00 31.83 4.00
4012 5684 0.327924 TCCACAGTAACATGGGCAGG 59.672 55.000 0.00 0.00 36.56 4.85
4013 5685 1.278985 TCTCCACAGTAACATGGGCAG 59.721 52.381 0.00 0.00 36.56 4.85
4036 5708 8.970020 AGTTCAATATTCACTGATGGCATTTTA 58.030 29.630 0.00 0.00 0.00 1.52
4037 5709 7.844009 AGTTCAATATTCACTGATGGCATTTT 58.156 30.769 0.00 0.00 0.00 1.82
4038 5710 7.341256 AGAGTTCAATATTCACTGATGGCATTT 59.659 33.333 0.00 0.00 0.00 2.32
4039 5711 6.832384 AGAGTTCAATATTCACTGATGGCATT 59.168 34.615 0.00 0.00 0.00 3.56
4040 5712 6.363065 AGAGTTCAATATTCACTGATGGCAT 58.637 36.000 0.00 0.00 0.00 4.40
4041 5713 5.748402 AGAGTTCAATATTCACTGATGGCA 58.252 37.500 2.13 0.00 0.00 4.92
4042 5714 6.054295 AGAGAGTTCAATATTCACTGATGGC 58.946 40.000 2.13 0.00 0.00 4.40
4043 5715 9.039870 GTAAGAGAGTTCAATATTCACTGATGG 57.960 37.037 2.13 0.00 0.00 3.51
4044 5716 9.814899 AGTAAGAGAGTTCAATATTCACTGATG 57.185 33.333 2.13 0.00 0.00 3.07
4045 5717 9.814899 CAGTAAGAGAGTTCAATATTCACTGAT 57.185 33.333 2.13 0.00 0.00 2.90
4046 5718 7.761704 GCAGTAAGAGAGTTCAATATTCACTGA 59.238 37.037 0.00 0.00 0.00 3.41
4047 5719 7.253917 CGCAGTAAGAGAGTTCAATATTCACTG 60.254 40.741 2.13 0.00 0.00 3.66
4048 5720 6.754209 CGCAGTAAGAGAGTTCAATATTCACT 59.246 38.462 0.00 0.00 0.00 3.41
4049 5721 6.019479 CCGCAGTAAGAGAGTTCAATATTCAC 60.019 42.308 0.00 0.00 0.00 3.18
4050 5722 6.042777 CCGCAGTAAGAGAGTTCAATATTCA 58.957 40.000 0.00 0.00 0.00 2.57
4051 5723 6.273825 TCCGCAGTAAGAGAGTTCAATATTC 58.726 40.000 0.00 0.00 0.00 1.75
4052 5724 6.096987 TCTCCGCAGTAAGAGAGTTCAATATT 59.903 38.462 0.00 0.00 34.23 1.28
4053 5725 5.594725 TCTCCGCAGTAAGAGAGTTCAATAT 59.405 40.000 0.00 0.00 34.23 1.28
4054 5726 4.948004 TCTCCGCAGTAAGAGAGTTCAATA 59.052 41.667 0.00 0.00 34.23 1.90
4055 5727 3.764434 TCTCCGCAGTAAGAGAGTTCAAT 59.236 43.478 0.00 0.00 34.23 2.57
4056 5728 3.057456 GTCTCCGCAGTAAGAGAGTTCAA 60.057 47.826 0.00 0.00 39.74 2.69
4057 5729 2.488545 GTCTCCGCAGTAAGAGAGTTCA 59.511 50.000 0.00 0.00 39.74 3.18
4058 5730 2.488545 TGTCTCCGCAGTAAGAGAGTTC 59.511 50.000 0.00 0.00 39.74 3.01
4059 5731 2.515854 TGTCTCCGCAGTAAGAGAGTT 58.484 47.619 0.00 0.00 39.74 3.01
4060 5732 2.201921 TGTCTCCGCAGTAAGAGAGT 57.798 50.000 0.00 0.00 39.74 3.24
4061 5733 2.490115 ACTTGTCTCCGCAGTAAGAGAG 59.510 50.000 1.18 0.00 39.74 3.20
4062 5734 2.488545 GACTTGTCTCCGCAGTAAGAGA 59.511 50.000 1.18 0.00 36.80 3.10
4063 5735 2.416162 GGACTTGTCTCCGCAGTAAGAG 60.416 54.545 0.61 0.00 0.00 2.85
4064 5736 1.544691 GGACTTGTCTCCGCAGTAAGA 59.455 52.381 0.61 0.00 0.00 2.10
4065 5737 1.272490 TGGACTTGTCTCCGCAGTAAG 59.728 52.381 0.61 0.00 32.22 2.34
4066 5738 1.334160 TGGACTTGTCTCCGCAGTAA 58.666 50.000 0.61 0.00 32.22 2.24
4067 5739 1.557099 ATGGACTTGTCTCCGCAGTA 58.443 50.000 0.61 0.00 32.22 2.74
4068 5740 1.557099 TATGGACTTGTCTCCGCAGT 58.443 50.000 0.61 0.00 32.22 4.40
4069 5741 2.898729 ATATGGACTTGTCTCCGCAG 57.101 50.000 0.61 0.00 32.22 5.18
4070 5742 3.627395 AAATATGGACTTGTCTCCGCA 57.373 42.857 0.61 0.00 32.22 5.69
4071 5743 4.272748 GGTAAAATATGGACTTGTCTCCGC 59.727 45.833 0.61 0.00 32.22 5.54
4072 5744 5.671493 AGGTAAAATATGGACTTGTCTCCG 58.329 41.667 0.61 0.00 32.22 4.63
4073 5745 6.183360 GCAAGGTAAAATATGGACTTGTCTCC 60.183 42.308 0.00 0.00 38.01 3.71
4074 5746 6.599638 AGCAAGGTAAAATATGGACTTGTCTC 59.400 38.462 0.00 0.00 38.01 3.36
4097 5771 2.481289 ACTCTACCAAAAGGCTGAGC 57.519 50.000 0.00 0.00 0.00 4.26
4155 5829 4.697756 ACGACCATGGCCACCACG 62.698 66.667 8.16 14.63 35.80 4.94
4160 5834 2.432444 CTTCTAAAACGACCATGGCCA 58.568 47.619 13.04 8.56 0.00 5.36
4161 5835 1.743394 CCTTCTAAAACGACCATGGCC 59.257 52.381 13.04 0.00 0.00 5.36
4168 5842 3.001414 GGGAGAAGCCTTCTAAAACGAC 58.999 50.000 7.02 0.00 40.87 4.34
4169 5843 2.904434 AGGGAGAAGCCTTCTAAAACGA 59.096 45.455 7.02 0.00 40.87 3.85
4170 5844 3.263261 GAGGGAGAAGCCTTCTAAAACG 58.737 50.000 7.02 0.00 40.87 3.60
4171 5845 3.263261 CGAGGGAGAAGCCTTCTAAAAC 58.737 50.000 7.02 0.00 40.48 2.43
4172 5846 2.354805 GCGAGGGAGAAGCCTTCTAAAA 60.355 50.000 7.02 0.00 40.48 1.52
4173 5847 1.207329 GCGAGGGAGAAGCCTTCTAAA 59.793 52.381 7.02 0.00 40.48 1.85
4174 5848 0.824759 GCGAGGGAGAAGCCTTCTAA 59.175 55.000 7.02 0.00 40.48 2.10
4175 5849 1.384989 CGCGAGGGAGAAGCCTTCTA 61.385 60.000 7.02 0.00 40.48 2.10
4176 5850 2.716017 CGCGAGGGAGAAGCCTTCT 61.716 63.158 6.69 6.69 40.48 2.85
4177 5851 2.202810 CGCGAGGGAGAAGCCTTC 60.203 66.667 0.00 0.00 39.31 3.46
4178 5852 4.459089 GCGCGAGGGAGAAGCCTT 62.459 66.667 12.10 0.00 36.66 4.35
4201 5875 4.545706 TCGGATGACATGGCCGGC 62.546 66.667 21.18 21.18 44.87 6.13
4202 5876 2.588877 GTCGGATGACATGGCCGG 60.589 66.667 13.82 0.00 44.82 6.13
4203 5877 2.961721 CGTCGGATGACATGGCCG 60.962 66.667 8.85 8.85 45.80 6.13
4204 5878 3.272334 GCGTCGGATGACATGGCC 61.272 66.667 0.00 0.00 45.80 5.36
4205 5879 3.272334 GGCGTCGGATGACATGGC 61.272 66.667 0.33 0.00 45.80 4.40
4206 5880 0.033366 TATGGCGTCGGATGACATGG 59.967 55.000 25.36 0.00 45.80 3.66
4207 5881 1.422388 CTATGGCGTCGGATGACATG 58.578 55.000 25.36 13.20 45.80 3.21
4208 5882 0.319900 GCTATGGCGTCGGATGACAT 60.320 55.000 21.50 21.50 45.80 3.06
4209 5883 1.067416 GCTATGGCGTCGGATGACA 59.933 57.895 8.45 8.45 45.80 3.58
4210 5884 0.319900 ATGCTATGGCGTCGGATGAC 60.320 55.000 0.33 0.00 42.25 3.06
4211 5885 0.319813 CATGCTATGGCGTCGGATGA 60.320 55.000 6.87 0.00 42.25 2.92
4212 5886 0.319813 TCATGCTATGGCGTCGGATG 60.320 55.000 6.41 6.41 42.25 3.51
4213 5887 0.037882 CTCATGCTATGGCGTCGGAT 60.038 55.000 0.00 0.00 42.25 4.18
4214 5888 1.363807 CTCATGCTATGGCGTCGGA 59.636 57.895 0.00 0.00 42.25 4.55
4215 5889 2.313172 GCTCATGCTATGGCGTCGG 61.313 63.158 0.00 0.00 42.25 4.79
4216 5890 2.652079 CGCTCATGCTATGGCGTCG 61.652 63.158 16.12 0.00 41.62 5.12
4217 5891 2.947890 GCGCTCATGCTATGGCGTC 61.948 63.158 20.74 14.54 45.32 5.19
4218 5892 2.969238 GCGCTCATGCTATGGCGT 60.969 61.111 20.74 0.00 45.32 5.68
4219 5893 3.720193 GGCGCTCATGCTATGGCG 61.720 66.667 7.64 18.17 45.87 5.69
4220 5894 2.281345 AGGCGCTCATGCTATGGC 60.281 61.111 7.64 0.00 36.97 4.40
4221 5895 2.614446 GCAGGCGCTCATGCTATGG 61.614 63.158 20.39 0.00 39.38 2.74
4222 5896 2.944429 GCAGGCGCTCATGCTATG 59.056 61.111 20.39 4.44 39.38 2.23
4234 5908 1.375098 GATCTCCAACAGCAGCAGGC 61.375 60.000 0.00 0.00 45.30 4.85
4235 5909 0.035725 TGATCTCCAACAGCAGCAGG 60.036 55.000 0.00 0.00 0.00 4.85
4236 5910 1.085091 GTGATCTCCAACAGCAGCAG 58.915 55.000 0.00 0.00 0.00 4.24
4237 5911 0.689055 AGTGATCTCCAACAGCAGCA 59.311 50.000 0.00 0.00 0.00 4.41
4238 5912 2.675348 GTTAGTGATCTCCAACAGCAGC 59.325 50.000 1.88 0.00 0.00 5.25
4239 5913 3.930336 TGTTAGTGATCTCCAACAGCAG 58.070 45.455 4.92 0.00 0.00 4.24
4240 5914 3.930336 CTGTTAGTGATCTCCAACAGCA 58.070 45.455 18.55 0.04 40.82 4.41
4242 5916 4.199432 AGCTGTTAGTGATCTCCAACAG 57.801 45.455 23.32 23.32 46.78 3.16
4243 5917 4.284490 AGAAGCTGTTAGTGATCTCCAACA 59.716 41.667 8.20 8.20 0.00 3.33
4244 5918 4.826556 AGAAGCTGTTAGTGATCTCCAAC 58.173 43.478 0.00 0.00 0.00 3.77
4245 5919 5.078411 GAGAAGCTGTTAGTGATCTCCAA 57.922 43.478 0.00 0.00 0.00 3.53
4246 5920 4.727507 GAGAAGCTGTTAGTGATCTCCA 57.272 45.455 0.00 0.00 0.00 3.86
4247 5921 4.053469 GGAGAAGCTGTTAGTGATCTCC 57.947 50.000 10.30 10.30 44.25 3.71
4248 5922 5.337578 AAGGAGAAGCTGTTAGTGATCTC 57.662 43.478 0.00 0.00 34.08 2.75
4249 5923 5.753721 AAAGGAGAAGCTGTTAGTGATCT 57.246 39.130 0.00 0.00 0.00 2.75
4250 5924 5.934625 TGAAAAGGAGAAGCTGTTAGTGATC 59.065 40.000 0.00 0.00 0.00 2.92
4251 5925 5.703130 GTGAAAAGGAGAAGCTGTTAGTGAT 59.297 40.000 0.00 0.00 0.00 3.06
4252 5926 5.057149 GTGAAAAGGAGAAGCTGTTAGTGA 58.943 41.667 0.00 0.00 0.00 3.41
4253 5927 4.816385 TGTGAAAAGGAGAAGCTGTTAGTG 59.184 41.667 0.00 0.00 0.00 2.74
4254 5928 5.036117 TGTGAAAAGGAGAAGCTGTTAGT 57.964 39.130 0.00 0.00 0.00 2.24
4255 5929 5.278022 GGTTGTGAAAAGGAGAAGCTGTTAG 60.278 44.000 0.00 0.00 0.00 2.34
4256 5930 4.578928 GGTTGTGAAAAGGAGAAGCTGTTA 59.421 41.667 0.00 0.00 0.00 2.41
4257 5931 3.381590 GGTTGTGAAAAGGAGAAGCTGTT 59.618 43.478 0.00 0.00 0.00 3.16
4258 5932 2.952310 GGTTGTGAAAAGGAGAAGCTGT 59.048 45.455 0.00 0.00 0.00 4.40
4259 5933 2.031682 CGGTTGTGAAAAGGAGAAGCTG 60.032 50.000 0.00 0.00 0.00 4.24
4260 5934 2.222027 CGGTTGTGAAAAGGAGAAGCT 58.778 47.619 0.00 0.00 0.00 3.74
4261 5935 1.335051 GCGGTTGTGAAAAGGAGAAGC 60.335 52.381 0.00 0.00 0.00 3.86
4262 5936 2.222027 AGCGGTTGTGAAAAGGAGAAG 58.778 47.619 0.00 0.00 0.00 2.85
4263 5937 2.341846 AGCGGTTGTGAAAAGGAGAA 57.658 45.000 0.00 0.00 0.00 2.87
4264 5938 2.218603 GAAGCGGTTGTGAAAAGGAGA 58.781 47.619 3.70 0.00 0.00 3.71
4265 5939 1.946768 TGAAGCGGTTGTGAAAAGGAG 59.053 47.619 3.70 0.00 0.00 3.69
4266 5940 1.673920 GTGAAGCGGTTGTGAAAAGGA 59.326 47.619 3.70 0.00 0.00 3.36
4267 5941 1.403679 TGTGAAGCGGTTGTGAAAAGG 59.596 47.619 3.70 0.00 0.00 3.11
4268 5942 2.719798 CTGTGAAGCGGTTGTGAAAAG 58.280 47.619 3.70 0.00 0.00 2.27
4269 5943 1.202245 GCTGTGAAGCGGTTGTGAAAA 60.202 47.619 3.70 0.00 0.00 2.29
4270 5944 0.380378 GCTGTGAAGCGGTTGTGAAA 59.620 50.000 3.70 0.00 0.00 2.69
4271 5945 0.463654 AGCTGTGAAGCGGTTGTGAA 60.464 50.000 3.70 0.00 40.27 3.18
4272 5946 0.880278 GAGCTGTGAAGCGGTTGTGA 60.880 55.000 3.70 0.00 40.27 3.58
4273 5947 0.882042 AGAGCTGTGAAGCGGTTGTG 60.882 55.000 3.70 0.00 40.27 3.33
4274 5948 0.601311 GAGAGCTGTGAAGCGGTTGT 60.601 55.000 3.70 0.00 40.27 3.32
4275 5949 1.621301 CGAGAGCTGTGAAGCGGTTG 61.621 60.000 3.70 0.00 40.27 3.77
4276 5950 1.373497 CGAGAGCTGTGAAGCGGTT 60.373 57.895 0.00 0.00 40.27 4.44
4277 5951 2.259818 CGAGAGCTGTGAAGCGGT 59.740 61.111 0.00 0.00 40.27 5.68
4278 5952 2.507992 CCGAGAGCTGTGAAGCGG 60.508 66.667 0.00 0.00 40.27 5.52
4279 5953 3.184683 GCCGAGAGCTGTGAAGCG 61.185 66.667 0.00 0.00 40.27 4.68
4280 5954 2.817396 GGCCGAGAGCTGTGAAGC 60.817 66.667 0.00 0.00 43.05 3.86
4281 5955 0.392193 AATGGCCGAGAGCTGTGAAG 60.392 55.000 0.00 0.00 43.05 3.02
4282 5956 0.036732 AAATGGCCGAGAGCTGTGAA 59.963 50.000 0.00 0.00 43.05 3.18
4283 5957 0.391661 GAAATGGCCGAGAGCTGTGA 60.392 55.000 0.00 0.00 43.05 3.58
4284 5958 0.392193 AGAAATGGCCGAGAGCTGTG 60.392 55.000 0.00 0.00 43.05 3.66
4285 5959 0.326264 AAGAAATGGCCGAGAGCTGT 59.674 50.000 0.00 0.00 43.05 4.40
4286 5960 0.731417 CAAGAAATGGCCGAGAGCTG 59.269 55.000 0.00 0.00 43.05 4.24
4287 5961 1.028868 GCAAGAAATGGCCGAGAGCT 61.029 55.000 0.00 0.00 43.05 4.09
4288 5962 1.028868 AGCAAGAAATGGCCGAGAGC 61.029 55.000 0.00 0.00 42.60 4.09
4289 5963 1.012841 GAGCAAGAAATGGCCGAGAG 58.987 55.000 0.00 0.00 0.00 3.20
4290 5964 0.324614 TGAGCAAGAAATGGCCGAGA 59.675 50.000 0.00 0.00 0.00 4.04
4291 5965 0.731417 CTGAGCAAGAAATGGCCGAG 59.269 55.000 0.00 0.00 0.00 4.63
4292 5966 1.308069 GCTGAGCAAGAAATGGCCGA 61.308 55.000 0.00 0.00 0.00 5.54
4293 5967 1.138247 GCTGAGCAAGAAATGGCCG 59.862 57.895 0.00 0.00 0.00 6.13
4294 5968 0.893447 AAGCTGAGCAAGAAATGGCC 59.107 50.000 7.39 0.00 0.00 5.36
4295 5969 1.542915 TGAAGCTGAGCAAGAAATGGC 59.457 47.619 7.39 0.00 0.00 4.40
4296 5970 3.079578 TCTGAAGCTGAGCAAGAAATGG 58.920 45.455 7.39 0.00 0.00 3.16
4297 5971 3.752222 AGTCTGAAGCTGAGCAAGAAATG 59.248 43.478 7.39 0.00 0.00 2.32
4298 5972 4.002316 GAGTCTGAAGCTGAGCAAGAAAT 58.998 43.478 7.39 0.00 0.00 2.17
4299 5973 3.070734 AGAGTCTGAAGCTGAGCAAGAAA 59.929 43.478 7.39 0.00 0.00 2.52
4300 5974 2.632028 AGAGTCTGAAGCTGAGCAAGAA 59.368 45.455 7.39 0.00 0.00 2.52
4301 5975 2.246469 AGAGTCTGAAGCTGAGCAAGA 58.754 47.619 7.39 3.66 0.00 3.02
4302 5976 2.747396 AGAGTCTGAAGCTGAGCAAG 57.253 50.000 7.39 0.92 0.00 4.01
4303 5977 2.366590 TGAAGAGTCTGAAGCTGAGCAA 59.633 45.455 7.39 0.00 0.00 3.91
4304 5978 1.966354 TGAAGAGTCTGAAGCTGAGCA 59.034 47.619 7.39 0.00 0.00 4.26
4305 5979 2.336667 GTGAAGAGTCTGAAGCTGAGC 58.663 52.381 0.00 0.00 0.00 4.26
4306 5980 2.594321 CGTGAAGAGTCTGAAGCTGAG 58.406 52.381 0.00 0.00 0.00 3.35
4307 5981 1.336332 GCGTGAAGAGTCTGAAGCTGA 60.336 52.381 0.00 0.00 0.00 4.26
4308 5982 1.066914 GCGTGAAGAGTCTGAAGCTG 58.933 55.000 0.00 0.00 0.00 4.24
4309 5983 0.387878 CGCGTGAAGAGTCTGAAGCT 60.388 55.000 0.00 0.00 0.00 3.74
4310 5984 1.950098 GCGCGTGAAGAGTCTGAAGC 61.950 60.000 8.43 0.00 0.00 3.86
4311 5985 0.387878 AGCGCGTGAAGAGTCTGAAG 60.388 55.000 8.43 0.00 0.00 3.02
4312 5986 0.032130 AAGCGCGTGAAGAGTCTGAA 59.968 50.000 8.43 0.00 0.00 3.02
4313 5987 0.387367 GAAGCGCGTGAAGAGTCTGA 60.387 55.000 8.43 0.00 0.00 3.27
4314 5988 1.347817 GGAAGCGCGTGAAGAGTCTG 61.348 60.000 8.43 0.00 0.00 3.51
4315 5989 1.080434 GGAAGCGCGTGAAGAGTCT 60.080 57.895 8.43 0.00 0.00 3.24
4316 5990 1.073768 GAGGAAGCGCGTGAAGAGTC 61.074 60.000 8.43 0.00 0.00 3.36
4317 5991 1.080434 GAGGAAGCGCGTGAAGAGT 60.080 57.895 8.43 0.00 0.00 3.24
4318 5992 1.075425 CAGAGGAAGCGCGTGAAGAG 61.075 60.000 8.43 0.00 0.00 2.85
4319 5993 1.080501 CAGAGGAAGCGCGTGAAGA 60.081 57.895 8.43 0.00 0.00 2.87
4320 5994 1.080501 TCAGAGGAAGCGCGTGAAG 60.081 57.895 8.43 0.00 0.00 3.02
4321 5995 1.372997 GTCAGAGGAAGCGCGTGAA 60.373 57.895 8.43 0.00 0.00 3.18
4322 5996 2.201436 GAGTCAGAGGAAGCGCGTGA 62.201 60.000 8.43 0.00 0.00 4.35
4323 5997 1.803519 GAGTCAGAGGAAGCGCGTG 60.804 63.158 8.43 0.00 0.00 5.34
4324 5998 2.569134 GAGTCAGAGGAAGCGCGT 59.431 61.111 8.43 0.00 0.00 6.01
4325 5999 2.202676 GGAGTCAGAGGAAGCGCG 60.203 66.667 0.00 0.00 0.00 6.86
4326 6000 0.809241 CATGGAGTCAGAGGAAGCGC 60.809 60.000 0.00 0.00 0.00 5.92
4327 6001 0.820226 TCATGGAGTCAGAGGAAGCG 59.180 55.000 0.00 0.00 0.00 4.68
4328 6002 2.433604 TGATCATGGAGTCAGAGGAAGC 59.566 50.000 0.00 0.00 0.00 3.86
4329 6003 4.081254 TGTTGATCATGGAGTCAGAGGAAG 60.081 45.833 0.00 0.00 0.00 3.46
4330 6004 3.840078 TGTTGATCATGGAGTCAGAGGAA 59.160 43.478 0.00 0.00 0.00 3.36
4331 6005 3.444029 TGTTGATCATGGAGTCAGAGGA 58.556 45.455 0.00 0.00 0.00 3.71
4332 6006 3.900966 TGTTGATCATGGAGTCAGAGG 57.099 47.619 0.00 0.00 0.00 3.69
4333 6007 4.829968 AGTTGTTGATCATGGAGTCAGAG 58.170 43.478 0.00 0.00 0.00 3.35
4334 6008 4.323028 GGAGTTGTTGATCATGGAGTCAGA 60.323 45.833 0.00 0.00 0.00 3.27
4335 6009 3.937706 GGAGTTGTTGATCATGGAGTCAG 59.062 47.826 0.00 0.00 0.00 3.51
4336 6010 3.327464 TGGAGTTGTTGATCATGGAGTCA 59.673 43.478 0.00 0.00 0.00 3.41
4337 6011 3.937706 CTGGAGTTGTTGATCATGGAGTC 59.062 47.826 0.00 0.00 0.00 3.36
4338 6012 3.328931 ACTGGAGTTGTTGATCATGGAGT 59.671 43.478 0.00 0.00 0.00 3.85
4339 6013 3.937706 GACTGGAGTTGTTGATCATGGAG 59.062 47.826 0.00 0.00 0.00 3.86
4340 6014 3.617288 CGACTGGAGTTGTTGATCATGGA 60.617 47.826 0.00 0.00 0.00 3.41
4341 6015 2.674852 CGACTGGAGTTGTTGATCATGG 59.325 50.000 0.00 0.00 0.00 3.66
4342 6016 3.329386 ACGACTGGAGTTGTTGATCATG 58.671 45.455 0.00 0.00 39.53 3.07
4343 6017 3.685139 ACGACTGGAGTTGTTGATCAT 57.315 42.857 0.00 0.00 39.53 2.45
4344 6018 4.462834 AGATACGACTGGAGTTGTTGATCA 59.537 41.667 4.99 0.00 42.36 2.92
4345 6019 5.000012 AGATACGACTGGAGTTGTTGATC 58.000 43.478 4.99 3.94 42.36 2.92
4346 6020 4.142138 GGAGATACGACTGGAGTTGTTGAT 60.142 45.833 4.99 0.00 42.36 2.57
4347 6021 3.192844 GGAGATACGACTGGAGTTGTTGA 59.807 47.826 4.99 0.00 42.36 3.18
4348 6022 3.512680 GGAGATACGACTGGAGTTGTTG 58.487 50.000 4.99 0.00 42.36 3.33
4349 6023 2.163815 CGGAGATACGACTGGAGTTGTT 59.836 50.000 4.99 0.00 42.36 2.83
4350 6024 1.743958 CGGAGATACGACTGGAGTTGT 59.256 52.381 5.05 5.05 44.38 3.32
4351 6025 1.743958 ACGGAGATACGACTGGAGTTG 59.256 52.381 0.00 0.00 37.61 3.16
4352 6026 2.125773 ACGGAGATACGACTGGAGTT 57.874 50.000 0.00 0.00 37.61 3.01
4353 6027 2.170187 ACTACGGAGATACGACTGGAGT 59.830 50.000 0.00 0.00 37.61 3.85
4354 6028 2.544686 CACTACGGAGATACGACTGGAG 59.455 54.545 0.00 0.00 37.61 3.86
4355 6029 2.558378 CACTACGGAGATACGACTGGA 58.442 52.381 0.00 0.00 37.61 3.86
4356 6030 1.602851 CCACTACGGAGATACGACTGG 59.397 57.143 0.00 0.00 36.56 4.00
4357 6031 1.002684 GCCACTACGGAGATACGACTG 60.003 57.143 0.00 0.00 36.56 3.51
4358 6032 1.307097 GCCACTACGGAGATACGACT 58.693 55.000 0.00 0.00 36.56 4.18
4359 6033 1.002684 CTGCCACTACGGAGATACGAC 60.003 57.143 0.00 0.00 36.56 4.34
4360 6034 1.306148 CTGCCACTACGGAGATACGA 58.694 55.000 0.00 0.00 36.56 3.43
4361 6035 0.311165 CCTGCCACTACGGAGATACG 59.689 60.000 0.00 0.00 36.56 3.06
4362 6036 0.674534 CCCTGCCACTACGGAGATAC 59.325 60.000 0.00 0.00 36.56 2.24
4363 6037 0.469331 CCCCTGCCACTACGGAGATA 60.469 60.000 0.00 0.00 36.56 1.98
4364 6038 1.762460 CCCCTGCCACTACGGAGAT 60.762 63.158 0.00 0.00 36.56 2.75
4365 6039 2.363795 CCCCTGCCACTACGGAGA 60.364 66.667 0.00 0.00 36.56 3.71
4366 6040 4.162690 GCCCCTGCCACTACGGAG 62.163 72.222 0.00 0.00 36.56 4.63
4370 6044 3.462199 GATCCGCCCCTGCCACTAC 62.462 68.421 0.00 0.00 0.00 2.73
4371 6045 3.161450 GATCCGCCCCTGCCACTA 61.161 66.667 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.