Multiple sequence alignment - TraesCS5D01G418900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G418900 chr5D 100.000 4711 0 0 1 4711 480370560 480375270 0.000000e+00 8700.0
1 TraesCS5D01G418900 chr5D 91.139 237 20 1 1929 2165 184081213 184080978 2.120000e-83 320.0
2 TraesCS5D01G418900 chr5D 90.041 241 23 1 1926 2165 340963302 340963542 1.270000e-80 311.0
3 TraesCS5D01G418900 chr5A 95.041 1835 56 20 2575 4396 598872094 598873906 0.000000e+00 2852.0
4 TraesCS5D01G418900 chr5A 91.802 1171 73 17 776 1933 598870204 598871364 0.000000e+00 1609.0
5 TraesCS5D01G418900 chr5A 93.475 613 24 8 1952 2548 598871356 598871968 0.000000e+00 896.0
6 TraesCS5D01G418900 chr5A 77.778 306 37 22 372 652 598869728 598870027 4.880000e-35 159.0
7 TraesCS5D01G418900 chr5A 94.118 85 5 0 4517 4601 598873937 598874021 3.830000e-26 130.0
8 TraesCS5D01G418900 chr5A 77.824 239 34 7 1 220 622117310 622117548 3.830000e-26 130.0
9 TraesCS5D01G418900 chr5A 83.217 143 18 5 58 195 467736179 467736320 4.950000e-25 126.0
10 TraesCS5D01G418900 chr5B 87.034 1797 86 60 227 1945 588520588 588522315 0.000000e+00 1892.0
11 TraesCS5D01G418900 chr5B 95.829 935 27 3 3298 4231 588523946 588524869 0.000000e+00 1500.0
12 TraesCS5D01G418900 chr5B 95.522 603 21 3 1952 2548 588522298 588522900 0.000000e+00 959.0
13 TraesCS5D01G418900 chr5B 92.876 379 16 4 2575 2953 588523031 588523398 1.490000e-149 540.0
14 TraesCS5D01G418900 chr5B 89.879 247 12 3 2991 3230 588523488 588523728 5.920000e-79 305.0
15 TraesCS5D01G418900 chr5B 87.302 126 14 2 4394 4519 511610727 511610850 4.910000e-30 143.0
16 TraesCS5D01G418900 chr5B 98.684 76 1 0 3222 3297 588523779 588523854 8.220000e-28 135.0
17 TraesCS5D01G418900 chr5B 75.934 241 33 17 1 220 692566099 692565863 3.000000e-17 100.0
18 TraesCS5D01G418900 chr5B 94.444 54 3 0 1 54 580846795 580846742 3.020000e-12 84.2
19 TraesCS5D01G418900 chr7B 91.304 230 19 1 1936 2165 141816145 141815917 3.540000e-81 313.0
20 TraesCS5D01G418900 chr7B 90.517 116 9 2 4404 4518 682034403 682034289 8.170000e-33 152.0
21 TraesCS5D01G418900 chr7B 78.166 229 28 13 1 208 57850337 57850564 4.950000e-25 126.0
22 TraesCS5D01G418900 chr7B 80.625 160 24 5 58 212 641804083 641803926 2.980000e-22 117.0
23 TraesCS5D01G418900 chr7B 79.503 161 23 8 66 220 39550873 39551029 6.450000e-19 106.0
24 TraesCS5D01G418900 chr3A 90.041 241 24 0 1925 2165 353160435 353160675 3.540000e-81 313.0
25 TraesCS5D01G418900 chr3A 88.235 51 3 2 4600 4650 95531654 95531701 1.830000e-04 58.4
26 TraesCS5D01G418900 chr2A 91.342 231 17 3 1936 2165 310407154 310406926 3.540000e-81 313.0
27 TraesCS5D01G418900 chr6B 89.754 244 22 3 1925 2166 20231117 20230875 4.580000e-80 309.0
28 TraesCS5D01G418900 chr6B 87.903 124 7 5 4406 4524 579542311 579542431 6.360000e-29 139.0
29 TraesCS5D01G418900 chr7A 89.627 241 24 1 1925 2165 310591364 310591125 5.920000e-79 305.0
30 TraesCS5D01G418900 chr7A 100.000 31 0 0 4620 4650 443957812 443957782 1.830000e-04 58.4
31 TraesCS5D01G418900 chr7D 92.593 108 7 1 4411 4518 581442139 581442245 2.270000e-33 154.0
32 TraesCS5D01G418900 chr7D 88.889 117 11 2 4409 4524 562578172 562578287 4.910000e-30 143.0
33 TraesCS5D01G418900 chr1B 91.743 109 8 1 4411 4519 57618135 57618242 2.940000e-32 150.0
34 TraesCS5D01G418900 chr1B 90.826 109 8 2 4411 4519 159922531 159922637 1.370000e-30 145.0
35 TraesCS5D01G418900 chr1B 90.826 109 9 1 4411 4519 626498463 626498570 1.370000e-30 145.0
36 TraesCS5D01G418900 chr1B 84.722 144 14 8 4378 4518 57618273 57618135 2.290000e-28 137.0
37 TraesCS5D01G418900 chr6A 78.423 241 28 16 1 220 5126668 5126905 8.220000e-28 135.0
38 TraesCS5D01G418900 chr6A 89.394 66 5 2 4605 4669 33291756 33291692 1.090000e-11 82.4
39 TraesCS5D01G418900 chr3D 81.325 166 23 7 58 220 554949066 554949226 1.380000e-25 128.0
40 TraesCS5D01G418900 chr3D 76.860 242 31 15 1 220 104097587 104097349 3.850000e-21 113.0
41 TraesCS5D01G418900 chr3D 76.279 215 30 14 1 195 19286241 19286028 1.400000e-15 95.3
42 TraesCS5D01G418900 chr6D 77.459 244 32 14 1 222 389867908 389867666 1.780000e-24 124.0
43 TraesCS5D01G418900 chr6D 78.140 215 26 11 1 195 304688757 304688544 2.980000e-22 117.0
44 TraesCS5D01G418900 chr6D 92.593 54 4 0 1 54 144144415 144144362 1.410000e-10 78.7
45 TraesCS5D01G418900 chr1D 84.348 115 14 3 92 203 12933319 12933206 4.980000e-20 110.0
46 TraesCS5D01G418900 chr1D 79.355 155 14 11 1 138 227645337 227645490 5.020000e-15 93.5
47 TraesCS5D01G418900 chr1A 76.371 237 29 16 1 220 261137044 261137270 8.340000e-18 102.0
48 TraesCS5D01G418900 chr4D 76.852 216 27 12 1 195 405720902 405720689 3.000000e-17 100.0
49 TraesCS5D01G418900 chr4D 86.667 60 3 5 4605 4663 490095446 490095501 1.420000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G418900 chr5D 480370560 480375270 4710 False 8700.0 8700 100.0000 1 4711 1 chr5D.!!$F2 4710
1 TraesCS5D01G418900 chr5A 598869728 598874021 4293 False 1129.2 2852 90.4428 372 4601 5 chr5A.!!$F3 4229
2 TraesCS5D01G418900 chr5B 588520588 588524869 4281 False 888.5 1892 93.3040 227 4231 6 chr5B.!!$F2 4004

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 376 0.035056 CCACTCCACCCACATCCTTC 60.035 60.000 0.0 0.0 0.00 3.46 F
967 1093 0.109458 CTGCGGTGCTGTAGTTCGTA 60.109 55.000 0.0 0.0 0.00 3.43 F
1941 2073 0.179150 GCCAACAACAACGACAGCAA 60.179 50.000 0.0 0.0 0.00 3.91 F
1943 2075 1.135546 CCAACAACAACGACAGCAACA 60.136 47.619 0.0 0.0 0.00 3.33 F
1946 2078 1.537638 ACAACAACGACAGCAACAACA 59.462 42.857 0.0 0.0 0.00 3.33 F
1949 2081 1.537638 ACAACGACAGCAACAACAACA 59.462 42.857 0.0 0.0 0.00 3.33 F
3168 3483 2.029623 CTGCTGCCCAGATTTATGCTT 58.970 47.619 0.0 0.0 44.64 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 2113 1.062810 TGGCCTACCCCAACTTGTTTT 60.063 47.619 3.32 0.00 33.59 2.43 R
2023 2155 3.125316 GCCAGAACTATGAGTTGGTTTCG 59.875 47.826 0.00 0.00 38.80 3.46 R
3209 3524 1.067295 AGAAGTTGGTCATGAGCCCA 58.933 50.000 21.58 11.56 0.00 5.36 R
3391 3856 1.467734 GTTCAACAGAGATGGCAGCAG 59.532 52.381 5.19 0.00 0.00 4.24 R
3504 3969 2.209690 TAGTCCATGTCCACGTCTGA 57.790 50.000 0.00 0.00 0.00 3.27 R
3614 4079 3.860605 ACGCATATGCCGAGGCCA 61.861 61.111 21.77 0.00 41.09 5.36 R
4048 4515 0.109342 CAGGTTCCCTCTGCACAACT 59.891 55.000 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.241530 TTCTGGTGCGCTGGTCCT 61.242 61.111 9.73 0.00 0.00 3.85
18 19 1.911269 TTCTGGTGCGCTGGTCCTA 60.911 57.895 9.73 0.00 0.00 2.94
19 20 1.264749 TTCTGGTGCGCTGGTCCTAT 61.265 55.000 9.73 0.00 0.00 2.57
20 21 1.522355 CTGGTGCGCTGGTCCTATG 60.522 63.158 9.73 0.00 0.00 2.23
21 22 2.203070 GGTGCGCTGGTCCTATGG 60.203 66.667 9.73 0.00 0.00 2.74
22 23 2.203070 GTGCGCTGGTCCTATGGG 60.203 66.667 9.73 0.00 0.00 4.00
23 24 3.479203 TGCGCTGGTCCTATGGGG 61.479 66.667 9.73 0.00 0.00 4.96
24 25 4.937431 GCGCTGGTCCTATGGGGC 62.937 72.222 0.00 0.00 36.26 5.80
31 32 3.571755 GTCCTATGGGGCCTTAGGA 57.428 57.895 23.53 23.53 45.03 2.94
32 33 3.571755 TCCTATGGGGCCTTAGGAC 57.428 57.895 23.53 0.00 43.50 3.85
33 34 0.645496 TCCTATGGGGCCTTAGGACA 59.355 55.000 23.53 6.10 43.50 4.02
34 35 1.010294 TCCTATGGGGCCTTAGGACAA 59.990 52.381 23.53 9.23 43.50 3.18
35 36 1.143073 CCTATGGGGCCTTAGGACAAC 59.857 57.143 21.56 0.00 42.87 3.32
36 37 0.834612 TATGGGGCCTTAGGACAACG 59.165 55.000 6.40 0.00 27.52 4.10
37 38 0.912487 ATGGGGCCTTAGGACAACGA 60.912 55.000 6.40 0.00 27.52 3.85
38 39 1.078637 GGGGCCTTAGGACAACGAC 60.079 63.158 6.40 0.00 27.52 4.34
39 40 1.551019 GGGGCCTTAGGACAACGACT 61.551 60.000 6.40 0.00 27.52 4.18
40 41 0.323957 GGGCCTTAGGACAACGACTT 59.676 55.000 6.40 0.00 27.52 3.01
41 42 1.271217 GGGCCTTAGGACAACGACTTT 60.271 52.381 6.40 0.00 27.52 2.66
42 43 2.074576 GGCCTTAGGACAACGACTTTC 58.925 52.381 0.69 0.00 0.00 2.62
43 44 2.074576 GCCTTAGGACAACGACTTTCC 58.925 52.381 0.69 0.00 0.00 3.13
44 45 2.334838 CCTTAGGACAACGACTTTCCG 58.665 52.381 0.00 0.00 34.31 4.30
45 46 2.029649 CCTTAGGACAACGACTTTCCGA 60.030 50.000 0.00 0.00 34.31 4.55
46 47 2.712057 TAGGACAACGACTTTCCGAC 57.288 50.000 0.00 0.00 34.31 4.79
47 48 0.748450 AGGACAACGACTTTCCGACA 59.252 50.000 0.00 0.00 34.31 4.35
48 49 1.137479 AGGACAACGACTTTCCGACAA 59.863 47.619 0.00 0.00 34.31 3.18
49 50 2.140717 GGACAACGACTTTCCGACAAT 58.859 47.619 0.00 0.00 0.00 2.71
50 51 2.157085 GGACAACGACTTTCCGACAATC 59.843 50.000 0.00 0.00 0.00 2.67
51 52 3.057734 GACAACGACTTTCCGACAATCT 58.942 45.455 0.00 0.00 0.00 2.40
52 53 4.232221 GACAACGACTTTCCGACAATCTA 58.768 43.478 0.00 0.00 0.00 1.98
53 54 3.985925 ACAACGACTTTCCGACAATCTAC 59.014 43.478 0.00 0.00 0.00 2.59
54 55 3.227810 ACGACTTTCCGACAATCTACC 57.772 47.619 0.00 0.00 0.00 3.18
55 56 2.559668 ACGACTTTCCGACAATCTACCA 59.440 45.455 0.00 0.00 0.00 3.25
56 57 3.194968 ACGACTTTCCGACAATCTACCAT 59.805 43.478 0.00 0.00 0.00 3.55
57 58 3.551890 CGACTTTCCGACAATCTACCATG 59.448 47.826 0.00 0.00 0.00 3.66
58 59 3.270877 ACTTTCCGACAATCTACCATGC 58.729 45.455 0.00 0.00 0.00 4.06
59 60 3.055094 ACTTTCCGACAATCTACCATGCT 60.055 43.478 0.00 0.00 0.00 3.79
60 61 3.627395 TTCCGACAATCTACCATGCTT 57.373 42.857 0.00 0.00 0.00 3.91
61 62 3.179443 TCCGACAATCTACCATGCTTC 57.821 47.619 0.00 0.00 0.00 3.86
62 63 1.860950 CCGACAATCTACCATGCTTCG 59.139 52.381 0.00 0.00 0.00 3.79
63 64 2.481276 CCGACAATCTACCATGCTTCGA 60.481 50.000 0.00 0.00 0.00 3.71
64 65 3.384668 CGACAATCTACCATGCTTCGAT 58.615 45.455 0.00 0.00 0.00 3.59
65 66 3.183172 CGACAATCTACCATGCTTCGATG 59.817 47.826 0.00 0.00 0.00 3.84
66 67 4.371786 GACAATCTACCATGCTTCGATGA 58.628 43.478 1.89 0.00 0.00 2.92
67 68 4.375272 ACAATCTACCATGCTTCGATGAG 58.625 43.478 1.89 0.00 0.00 2.90
68 69 3.674528 ATCTACCATGCTTCGATGAGG 57.325 47.619 1.89 3.27 0.00 3.86
69 70 1.688735 TCTACCATGCTTCGATGAGGG 59.311 52.381 1.89 2.56 0.00 4.30
70 71 1.688735 CTACCATGCTTCGATGAGGGA 59.311 52.381 1.89 0.00 0.00 4.20
71 72 0.467384 ACCATGCTTCGATGAGGGAG 59.533 55.000 1.89 0.00 0.00 4.30
72 73 0.250209 CCATGCTTCGATGAGGGAGG 60.250 60.000 1.89 0.00 0.00 4.30
73 74 0.755079 CATGCTTCGATGAGGGAGGA 59.245 55.000 1.89 0.00 0.00 3.71
74 75 1.047002 ATGCTTCGATGAGGGAGGAG 58.953 55.000 1.89 0.00 0.00 3.69
75 76 1.068921 GCTTCGATGAGGGAGGAGC 59.931 63.158 1.89 0.00 0.00 4.70
76 77 1.361993 CTTCGATGAGGGAGGAGCG 59.638 63.158 0.00 0.00 0.00 5.03
77 78 1.076995 TTCGATGAGGGAGGAGCGA 60.077 57.895 0.00 0.00 0.00 4.93
78 79 0.468214 TTCGATGAGGGAGGAGCGAT 60.468 55.000 0.00 0.00 0.00 4.58
79 80 1.175347 TCGATGAGGGAGGAGCGATG 61.175 60.000 0.00 0.00 0.00 3.84
80 81 1.670590 GATGAGGGAGGAGCGATGG 59.329 63.158 0.00 0.00 0.00 3.51
81 82 2.447586 GATGAGGGAGGAGCGATGGC 62.448 65.000 0.00 0.00 40.37 4.40
82 83 4.292178 GAGGGAGGAGCGATGGCG 62.292 72.222 0.00 0.00 46.35 5.69
86 87 4.838152 GAGGAGCGATGGCGGCAA 62.838 66.667 18.31 0.00 46.35 4.52
87 88 4.181010 AGGAGCGATGGCGGCAAT 62.181 61.111 18.31 4.46 46.35 3.56
88 89 2.280797 GGAGCGATGGCGGCAATA 60.281 61.111 18.31 0.00 46.35 1.90
89 90 2.607892 GGAGCGATGGCGGCAATAC 61.608 63.158 18.31 8.15 46.35 1.89
90 91 2.943345 GAGCGATGGCGGCAATACG 61.943 63.158 18.31 21.85 46.35 3.06
91 92 3.269347 GCGATGGCGGCAATACGT 61.269 61.111 26.39 9.62 38.16 3.57
92 93 2.819552 GCGATGGCGGCAATACGTT 61.820 57.895 26.39 8.96 38.16 3.99
93 94 1.275657 CGATGGCGGCAATACGTTC 59.724 57.895 18.31 6.87 35.98 3.95
94 95 1.275657 GATGGCGGCAATACGTTCG 59.724 57.895 18.31 0.00 35.98 3.95
95 96 2.101209 GATGGCGGCAATACGTTCGG 62.101 60.000 18.31 0.00 35.98 4.30
96 97 4.232248 GGCGGCAATACGTTCGGC 62.232 66.667 3.07 0.00 40.61 5.54
97 98 3.192922 GCGGCAATACGTTCGGCT 61.193 61.111 0.00 0.00 35.98 5.52
98 99 3.003478 CGGCAATACGTTCGGCTC 58.997 61.111 0.00 0.00 0.00 4.70
99 100 2.856346 CGGCAATACGTTCGGCTCG 61.856 63.158 0.00 0.00 0.00 5.03
100 101 2.320044 GCAATACGTTCGGCTCGC 59.680 61.111 0.00 0.00 0.00 5.03
101 102 2.165301 GCAATACGTTCGGCTCGCT 61.165 57.895 0.00 0.00 0.00 4.93
102 103 1.693083 GCAATACGTTCGGCTCGCTT 61.693 55.000 0.00 0.00 0.00 4.68
103 104 0.297820 CAATACGTTCGGCTCGCTTC 59.702 55.000 0.00 0.00 0.00 3.86
104 105 0.108992 AATACGTTCGGCTCGCTTCA 60.109 50.000 0.00 0.00 0.00 3.02
105 106 0.525668 ATACGTTCGGCTCGCTTCAG 60.526 55.000 0.00 0.00 0.00 3.02
106 107 3.843240 CGTTCGGCTCGCTTCAGC 61.843 66.667 0.00 0.00 38.84 4.26
117 118 1.704582 GCTTCAGCGCTTGTAGTCG 59.295 57.895 7.50 0.00 0.00 4.18
118 119 1.009389 GCTTCAGCGCTTGTAGTCGT 61.009 55.000 7.50 0.00 0.00 4.34
119 120 0.985549 CTTCAGCGCTTGTAGTCGTC 59.014 55.000 7.50 0.00 0.00 4.20
120 121 0.728129 TTCAGCGCTTGTAGTCGTCG 60.728 55.000 7.50 0.00 0.00 5.12
121 122 2.504244 AGCGCTTGTAGTCGTCGC 60.504 61.111 2.64 0.00 45.34 5.19
122 123 2.504244 GCGCTTGTAGTCGTCGCT 60.504 61.111 0.00 0.00 42.19 4.93
123 124 1.226211 GCGCTTGTAGTCGTCGCTA 60.226 57.895 0.00 0.00 42.19 4.26
124 125 1.194896 GCGCTTGTAGTCGTCGCTAG 61.195 60.000 0.00 0.00 42.19 3.42
125 126 0.372679 CGCTTGTAGTCGTCGCTAGA 59.627 55.000 0.00 0.00 0.00 2.43
126 127 1.003759 CGCTTGTAGTCGTCGCTAGAT 60.004 52.381 0.00 0.00 0.00 1.98
127 128 2.376956 GCTTGTAGTCGTCGCTAGATG 58.623 52.381 0.00 0.00 34.75 2.90
128 129 2.855187 GCTTGTAGTCGTCGCTAGATGG 60.855 54.545 0.00 0.00 34.23 3.51
129 130 2.034104 TGTAGTCGTCGCTAGATGGT 57.966 50.000 0.00 0.00 34.23 3.55
130 131 1.938577 TGTAGTCGTCGCTAGATGGTC 59.061 52.381 0.00 0.00 34.23 4.02
131 132 2.211806 GTAGTCGTCGCTAGATGGTCT 58.788 52.381 0.00 0.00 34.23 3.85
132 133 2.616634 AGTCGTCGCTAGATGGTCTA 57.383 50.000 0.00 0.00 34.23 2.59
133 134 2.211806 AGTCGTCGCTAGATGGTCTAC 58.788 52.381 0.00 0.00 34.23 2.59
134 135 1.070710 GTCGTCGCTAGATGGTCTACG 60.071 57.143 0.00 0.00 34.23 3.51
135 136 1.202452 TCGTCGCTAGATGGTCTACGA 60.202 52.381 0.00 0.00 33.52 3.43
136 137 1.596260 CGTCGCTAGATGGTCTACGAA 59.404 52.381 0.00 0.00 35.75 3.85
137 138 2.599377 CGTCGCTAGATGGTCTACGAAC 60.599 54.545 0.00 0.00 35.75 3.95
138 139 1.945394 TCGCTAGATGGTCTACGAACC 59.055 52.381 0.00 0.00 39.94 3.62
143 144 4.902308 TGGTCTACGAACCATGCG 57.098 55.556 5.23 0.00 44.40 4.73
144 145 1.969085 TGGTCTACGAACCATGCGT 59.031 52.632 5.23 2.49 44.40 5.24
145 146 0.389296 TGGTCTACGAACCATGCGTG 60.389 55.000 7.06 0.00 44.40 5.34
146 147 0.108992 GGTCTACGAACCATGCGTGA 60.109 55.000 7.72 1.25 42.62 4.35
147 148 1.470979 GGTCTACGAACCATGCGTGAT 60.471 52.381 7.72 0.00 42.62 3.06
148 149 2.268298 GTCTACGAACCATGCGTGATT 58.732 47.619 7.72 0.00 42.62 2.57
149 150 2.671396 GTCTACGAACCATGCGTGATTT 59.329 45.455 7.72 0.00 42.62 2.17
150 151 3.124636 GTCTACGAACCATGCGTGATTTT 59.875 43.478 7.72 0.00 42.62 1.82
151 152 3.749088 TCTACGAACCATGCGTGATTTTT 59.251 39.130 7.72 0.00 42.62 1.94
152 153 4.930405 TCTACGAACCATGCGTGATTTTTA 59.070 37.500 7.72 0.00 42.62 1.52
153 154 4.695217 ACGAACCATGCGTGATTTTTAT 57.305 36.364 7.72 0.00 40.94 1.40
154 155 5.054390 ACGAACCATGCGTGATTTTTATT 57.946 34.783 7.72 0.00 40.94 1.40
155 156 6.184580 ACGAACCATGCGTGATTTTTATTA 57.815 33.333 7.72 0.00 40.94 0.98
156 157 6.791303 ACGAACCATGCGTGATTTTTATTAT 58.209 32.000 7.72 0.00 40.94 1.28
157 158 6.690957 ACGAACCATGCGTGATTTTTATTATG 59.309 34.615 7.72 0.00 40.94 1.90
158 159 6.690957 CGAACCATGCGTGATTTTTATTATGT 59.309 34.615 7.72 0.00 0.00 2.29
159 160 7.219917 CGAACCATGCGTGATTTTTATTATGTT 59.780 33.333 7.72 0.00 0.00 2.71
160 161 8.770438 AACCATGCGTGATTTTTATTATGTTT 57.230 26.923 7.72 0.00 0.00 2.83
161 162 9.862371 AACCATGCGTGATTTTTATTATGTTTA 57.138 25.926 7.72 0.00 0.00 2.01
162 163 9.515020 ACCATGCGTGATTTTTATTATGTTTAG 57.485 29.630 7.72 0.00 0.00 1.85
163 164 9.515020 CCATGCGTGATTTTTATTATGTTTAGT 57.485 29.630 7.72 0.00 0.00 2.24
176 177 3.857923 TGTTTAGTTTCGTTGTACCGC 57.142 42.857 0.00 0.00 0.00 5.68
177 178 2.218302 TGTTTAGTTTCGTTGTACCGCG 59.782 45.455 0.00 0.00 0.00 6.46
178 179 2.414058 TTAGTTTCGTTGTACCGCGA 57.586 45.000 8.23 5.00 35.17 5.87
179 180 2.634982 TAGTTTCGTTGTACCGCGAT 57.365 45.000 8.23 0.00 36.97 4.58
180 181 1.065358 AGTTTCGTTGTACCGCGATG 58.935 50.000 8.23 0.00 36.97 3.84
181 182 1.062258 GTTTCGTTGTACCGCGATGA 58.938 50.000 8.23 0.00 36.97 2.92
182 183 1.657094 GTTTCGTTGTACCGCGATGAT 59.343 47.619 8.23 0.00 36.97 2.45
183 184 1.552226 TTCGTTGTACCGCGATGATC 58.448 50.000 8.23 0.00 36.97 2.92
184 185 0.590481 TCGTTGTACCGCGATGATCG 60.590 55.000 8.23 11.02 43.89 3.69
185 186 0.590481 CGTTGTACCGCGATGATCGA 60.590 55.000 20.25 0.00 43.74 3.59
186 187 1.552226 GTTGTACCGCGATGATCGAA 58.448 50.000 20.25 0.00 43.74 3.71
187 188 1.517276 GTTGTACCGCGATGATCGAAG 59.483 52.381 20.25 10.88 43.74 3.79
188 189 1.018910 TGTACCGCGATGATCGAAGA 58.981 50.000 20.25 0.00 43.74 2.87
189 190 1.607148 TGTACCGCGATGATCGAAGAT 59.393 47.619 20.25 0.53 43.74 2.40
190 191 1.979469 GTACCGCGATGATCGAAGATG 59.021 52.381 20.25 3.68 43.74 2.90
191 192 0.668535 ACCGCGATGATCGAAGATGA 59.331 50.000 20.25 0.00 43.74 2.92
192 193 1.067060 ACCGCGATGATCGAAGATGAA 59.933 47.619 20.25 0.00 43.74 2.57
193 194 2.288457 ACCGCGATGATCGAAGATGAAT 60.288 45.455 20.25 0.00 43.74 2.57
194 195 3.057526 ACCGCGATGATCGAAGATGAATA 60.058 43.478 20.25 0.00 43.74 1.75
195 196 3.920412 CCGCGATGATCGAAGATGAATAA 59.080 43.478 20.25 0.00 43.74 1.40
196 197 4.031089 CCGCGATGATCGAAGATGAATAAG 59.969 45.833 20.25 0.00 43.74 1.73
197 198 4.618912 CGCGATGATCGAAGATGAATAAGT 59.381 41.667 20.25 0.00 43.74 2.24
198 199 5.219932 CGCGATGATCGAAGATGAATAAGTC 60.220 44.000 20.25 0.00 43.74 3.01
199 200 5.631096 GCGATGATCGAAGATGAATAAGTCA 59.369 40.000 20.25 0.00 43.74 3.41
200 201 6.144563 GCGATGATCGAAGATGAATAAGTCAA 59.855 38.462 20.25 0.00 43.74 3.18
201 202 7.306807 GCGATGATCGAAGATGAATAAGTCAAA 60.307 37.037 20.25 0.00 43.74 2.69
202 203 8.542953 CGATGATCGAAGATGAATAAGTCAAAA 58.457 33.333 9.62 0.00 43.74 2.44
203 204 9.861138 GATGATCGAAGATGAATAAGTCAAAAG 57.139 33.333 0.00 0.00 45.12 2.27
204 205 8.777865 TGATCGAAGATGAATAAGTCAAAAGT 57.222 30.769 0.00 0.00 45.12 2.66
205 206 9.219603 TGATCGAAGATGAATAAGTCAAAAGTT 57.780 29.630 0.00 0.00 45.12 2.66
208 209 9.273016 TCGAAGATGAATAAGTCAAAAGTTTCT 57.727 29.630 0.00 0.00 40.50 2.52
209 210 9.884465 CGAAGATGAATAAGTCAAAAGTTTCTT 57.116 29.630 0.00 0.00 40.50 2.52
212 213 9.354673 AGATGAATAAGTCAAAAGTTTCTTCCA 57.645 29.630 0.00 0.00 40.50 3.53
213 214 9.965824 GATGAATAAGTCAAAAGTTTCTTCCAA 57.034 29.630 0.00 0.00 40.50 3.53
236 237 4.858965 AGAAAGAGGAGAGATGGCAATT 57.141 40.909 0.00 0.00 0.00 2.32
243 244 2.098117 GGAGAGATGGCAATTTGGAACG 59.902 50.000 0.00 0.00 0.00 3.95
250 251 2.695666 TGGCAATTTGGAACGAAGGAAA 59.304 40.909 0.00 0.00 0.00 3.13
251 252 3.133003 TGGCAATTTGGAACGAAGGAAAA 59.867 39.130 0.00 0.00 0.00 2.29
298 304 3.244078 ACGGTCAGAAAGATGTGCAACTA 60.244 43.478 0.00 0.00 38.04 2.24
299 305 3.369147 CGGTCAGAAAGATGTGCAACTAG 59.631 47.826 0.00 0.00 38.04 2.57
300 306 4.569943 GGTCAGAAAGATGTGCAACTAGA 58.430 43.478 0.00 0.00 38.04 2.43
301 307 4.997395 GGTCAGAAAGATGTGCAACTAGAA 59.003 41.667 0.00 0.00 38.04 2.10
302 308 5.106908 GGTCAGAAAGATGTGCAACTAGAAC 60.107 44.000 0.00 0.00 38.04 3.01
303 309 5.698545 GTCAGAAAGATGTGCAACTAGAACT 59.301 40.000 0.00 0.00 38.04 3.01
304 310 5.928839 TCAGAAAGATGTGCAACTAGAACTC 59.071 40.000 0.00 0.00 38.04 3.01
305 311 4.926238 AGAAAGATGTGCAACTAGAACTCG 59.074 41.667 0.00 0.00 38.04 4.18
306 312 4.521130 AAGATGTGCAACTAGAACTCGA 57.479 40.909 0.00 0.00 38.04 4.04
307 313 4.103365 AGATGTGCAACTAGAACTCGAG 57.897 45.455 11.84 11.84 38.04 4.04
308 314 3.759086 AGATGTGCAACTAGAACTCGAGA 59.241 43.478 21.68 0.00 38.04 4.04
309 315 4.218635 AGATGTGCAACTAGAACTCGAGAA 59.781 41.667 21.68 0.27 38.04 2.87
310 316 3.902150 TGTGCAACTAGAACTCGAGAAG 58.098 45.455 21.68 12.66 38.04 2.85
311 317 3.568430 TGTGCAACTAGAACTCGAGAAGA 59.432 43.478 21.68 0.00 38.04 2.87
312 318 4.037565 TGTGCAACTAGAACTCGAGAAGAA 59.962 41.667 21.68 0.65 38.04 2.52
313 319 4.383351 GTGCAACTAGAACTCGAGAAGAAC 59.617 45.833 21.68 5.30 0.00 3.01
314 320 4.278669 TGCAACTAGAACTCGAGAAGAACT 59.721 41.667 21.68 12.15 0.00 3.01
315 321 5.472478 TGCAACTAGAACTCGAGAAGAACTA 59.528 40.000 21.68 12.59 0.00 2.24
316 322 6.151312 TGCAACTAGAACTCGAGAAGAACTAT 59.849 38.462 21.68 0.00 0.00 2.12
317 323 7.030768 GCAACTAGAACTCGAGAAGAACTATT 58.969 38.462 21.68 0.00 0.00 1.73
318 324 7.542824 GCAACTAGAACTCGAGAAGAACTATTT 59.457 37.037 21.68 11.23 0.00 1.40
319 325 9.413048 CAACTAGAACTCGAGAAGAACTATTTT 57.587 33.333 21.68 0.00 0.00 1.82
324 330 9.760077 AGAACTCGAGAAGAACTATTTTACAAA 57.240 29.630 21.68 0.00 0.00 2.83
355 361 6.036191 GTCGAGAAGAAATATTTCCACTCCAC 59.964 42.308 27.50 24.45 36.96 4.02
366 376 0.035056 CCACTCCACCCACATCCTTC 60.035 60.000 0.00 0.00 0.00 3.46
389 399 2.284798 GCGCAAAAACGACCTTGAAAAC 60.285 45.455 0.30 0.00 34.06 2.43
428 443 2.443016 CCCCTCCTCCTGAGACCG 60.443 72.222 0.00 0.00 44.42 4.79
459 479 3.005529 TCCTCCTTCCTTTTCTTCCCT 57.994 47.619 0.00 0.00 0.00 4.20
473 493 0.181587 TTCCCTCTCTCGCGATCTCT 59.818 55.000 10.36 0.00 0.00 3.10
489 521 4.748798 CTCCCCACCAGGCCTCCT 62.749 72.222 0.00 0.00 0.00 3.69
490 522 4.285790 TCCCCACCAGGCCTCCTT 62.286 66.667 0.00 0.00 0.00 3.36
551 607 4.507916 TCCTCCTCCTCGGCTCCG 62.508 72.222 1.14 1.14 41.35 4.63
645 710 1.471676 CCCTAACCTGCTCGTCATGTC 60.472 57.143 0.00 0.00 0.00 3.06
650 715 2.851195 ACCTGCTCGTCATGTCTTTTT 58.149 42.857 0.00 0.00 0.00 1.94
691 757 7.746526 AGCAATCGAATTAGAAATTTTCTGC 57.253 32.000 19.60 12.34 40.94 4.26
698 764 2.702270 AGAAATTTTCTGCCTGGGGT 57.298 45.000 10.82 0.00 38.91 4.95
773 870 6.239743 GGTTTGATTTCCCAAATTTCCTGGTA 60.240 38.462 0.00 0.00 38.18 3.25
834 947 7.699391 CGATGTTCTGTGCAATAAAATTGATCT 59.301 33.333 3.86 0.00 0.00 2.75
841 954 6.867816 TGTGCAATAAAATTGATCTGGTGTTC 59.132 34.615 3.86 0.00 0.00 3.18
842 955 6.867816 GTGCAATAAAATTGATCTGGTGTTCA 59.132 34.615 3.86 0.00 0.00 3.18
856 973 5.652014 TCTGGTGTTCATGCTAAAATTAGGG 59.348 40.000 2.61 0.00 0.00 3.53
967 1093 0.109458 CTGCGGTGCTGTAGTTCGTA 60.109 55.000 0.00 0.00 0.00 3.43
1242 1374 2.751913 CGTCTCGTCGTCCCTCAGG 61.752 68.421 0.00 0.00 0.00 3.86
1272 1404 1.612676 TCGACAAGAAGACCGAGGAA 58.387 50.000 0.00 0.00 0.00 3.36
1383 1515 2.159198 CCTGGAGTTATGCAATGCCAAC 60.159 50.000 1.53 7.23 0.00 3.77
1650 1782 6.521162 TGAAGCAACTGAACTACATACAGAA 58.479 36.000 0.00 0.00 35.85 3.02
1698 1830 8.958060 AGGTACTTCACTATGTATCCACATAT 57.042 34.615 0.00 0.00 40.69 1.78
1700 1832 9.998106 GGTACTTCACTATGTATCCACATATTT 57.002 33.333 0.00 0.00 44.65 1.40
1703 1835 8.713971 ACTTCACTATGTATCCACATATTTCCA 58.286 33.333 0.00 0.00 44.65 3.53
1704 1836 9.730705 CTTCACTATGTATCCACATATTTCCAT 57.269 33.333 0.00 0.00 44.65 3.41
1719 1851 9.927081 ACATATTTCCATTATTGAGAGTTCCTT 57.073 29.630 0.00 0.00 0.00 3.36
1724 1856 7.870509 TCCATTATTGAGAGTTCCTTTCATG 57.129 36.000 0.00 0.00 0.00 3.07
1726 1858 7.890127 TCCATTATTGAGAGTTCCTTTCATGTT 59.110 33.333 0.00 0.00 0.00 2.71
1727 1859 9.177608 CCATTATTGAGAGTTCCTTTCATGTTA 57.822 33.333 0.00 0.00 0.00 2.41
1733 1865 8.924511 TGAGAGTTCCTTTCATGTTATTTTCT 57.075 30.769 0.00 0.00 0.00 2.52
1739 1871 9.118236 GTTCCTTTCATGTTATTTTCTTTCTCG 57.882 33.333 0.00 0.00 0.00 4.04
1777 1909 6.985188 ATATAACATTGTATGATCACCCGC 57.015 37.500 0.00 0.00 0.00 6.13
1816 1948 0.881796 GGGTGCTGGACTGTTTTAGC 59.118 55.000 0.00 0.00 36.72 3.09
1881 2013 5.390251 GCATATTCGCTATGACAACCATCAG 60.390 44.000 8.49 0.00 39.79 2.90
1908 2040 3.845781 TGTATCCTCTCTGGGCAAATC 57.154 47.619 0.00 0.00 36.20 2.17
1935 2067 5.728351 GCTTATATAGCCAACAACAACGA 57.272 39.130 0.00 0.00 44.48 3.85
1936 2068 5.499047 GCTTATATAGCCAACAACAACGAC 58.501 41.667 0.00 0.00 44.48 4.34
1937 2069 5.064198 GCTTATATAGCCAACAACAACGACA 59.936 40.000 0.00 0.00 44.48 4.35
1938 2070 6.656314 TTATATAGCCAACAACAACGACAG 57.344 37.500 0.00 0.00 0.00 3.51
1939 2071 0.941542 TAGCCAACAACAACGACAGC 59.058 50.000 0.00 0.00 0.00 4.40
1940 2072 1.029408 AGCCAACAACAACGACAGCA 61.029 50.000 0.00 0.00 0.00 4.41
1941 2073 0.179150 GCCAACAACAACGACAGCAA 60.179 50.000 0.00 0.00 0.00 3.91
1942 2074 1.544686 CCAACAACAACGACAGCAAC 58.455 50.000 0.00 0.00 0.00 4.17
1943 2075 1.135546 CCAACAACAACGACAGCAACA 60.136 47.619 0.00 0.00 0.00 3.33
1944 2076 2.590073 CAACAACAACGACAGCAACAA 58.410 42.857 0.00 0.00 0.00 2.83
1945 2077 2.256445 ACAACAACGACAGCAACAAC 57.744 45.000 0.00 0.00 0.00 3.32
1946 2078 1.537638 ACAACAACGACAGCAACAACA 59.462 42.857 0.00 0.00 0.00 3.33
1947 2079 2.030717 ACAACAACGACAGCAACAACAA 60.031 40.909 0.00 0.00 0.00 2.83
1948 2080 2.256445 ACAACGACAGCAACAACAAC 57.744 45.000 0.00 0.00 0.00 3.32
1949 2081 1.537638 ACAACGACAGCAACAACAACA 59.462 42.857 0.00 0.00 0.00 3.33
1950 2082 2.030717 ACAACGACAGCAACAACAACAA 60.031 40.909 0.00 0.00 0.00 2.83
1960 2092 4.025313 AGCAACAACAACAACAACAACAAC 60.025 37.500 0.00 0.00 0.00 3.32
1979 2111 5.789521 ACAACAACAACAAAGCCTTTAGTT 58.210 33.333 0.00 0.00 0.00 2.24
1981 2113 5.652994 ACAACAACAAAGCCTTTAGTTCA 57.347 34.783 0.00 0.00 0.00 3.18
2008 2140 2.689034 GGGGTAGGCCAGAGCTGT 60.689 66.667 5.01 0.00 39.73 4.40
2023 2155 6.446318 CCAGAGCTGTAACTCATAAGATCTC 58.554 44.000 0.00 0.00 39.26 2.75
2303 2445 6.801539 ATATATGCGTTCTTATGTTGGTGG 57.198 37.500 0.00 0.00 0.00 4.61
2342 2484 6.813152 CCAACATATTTTGACCCATTTCTGAC 59.187 38.462 3.10 0.00 0.00 3.51
2425 2576 5.817616 CATGTTGTGCAAGTTCAATCTTC 57.182 39.130 0.00 0.00 0.00 2.87
2536 2687 5.152623 AGTCAATACATATCCCACGATGG 57.847 43.478 0.00 0.00 37.25 3.51
2702 2957 3.028850 CCCATGGAATCTCAATTGCAGT 58.971 45.455 15.22 0.00 44.99 4.40
2801 3056 3.502164 GGTTGCTACCTCATGGCAT 57.498 52.632 10.33 0.00 45.37 4.40
2978 3234 4.030913 TGTAGCTGTTAGATGCCCTACTT 58.969 43.478 0.00 0.00 0.00 2.24
3104 3419 5.416952 CCATAAGAATGAAAAGCAGACTGGT 59.583 40.000 0.07 0.07 34.84 4.00
3107 3422 8.680903 CATAAGAATGAAAAGCAGACTGGTAAT 58.319 33.333 7.75 0.00 34.84 1.89
3135 3450 6.739331 TTCCAGTACAAATTCCATTGGTTT 57.261 33.333 1.86 0.00 34.56 3.27
3136 3451 6.095432 TCCAGTACAAATTCCATTGGTTTG 57.905 37.500 14.19 14.19 38.46 2.93
3137 3452 5.011533 TCCAGTACAAATTCCATTGGTTTGG 59.988 40.000 18.06 8.22 37.20 3.28
3138 3453 5.221621 CCAGTACAAATTCCATTGGTTTGGT 60.222 40.000 18.06 12.36 37.20 3.67
3139 3454 6.287525 CAGTACAAATTCCATTGGTTTGGTT 58.712 36.000 18.06 5.79 37.20 3.67
3168 3483 2.029623 CTGCTGCCCAGATTTATGCTT 58.970 47.619 0.00 0.00 44.64 3.91
3209 3524 5.336690 GGTGCCATCACACAAGTATTCATTT 60.337 40.000 0.00 0.00 44.87 2.32
3220 3535 5.126061 ACAAGTATTCATTTGGGCTCATGAC 59.874 40.000 0.00 0.00 0.00 3.06
3329 3794 7.950512 TGAACAATACCAAACATGTTTCTCAT 58.049 30.769 20.85 10.80 36.22 2.90
3361 3826 4.461781 ACTGCAATTGAGATTCCAAAGAGG 59.538 41.667 10.34 0.00 39.47 3.69
3504 3969 6.614906 AGAATTCTATGATCCCAAGTCTGAGT 59.385 38.462 6.06 0.00 0.00 3.41
3614 4079 2.987125 CGGGTTGGAGTCGGGATT 59.013 61.111 0.00 0.00 0.00 3.01
3824 4289 2.051614 CAGCTTGTGTGCACTGCG 60.052 61.111 19.41 5.09 36.90 5.18
4040 4507 2.618709 GCACCTAAGAACTGTTGCAAGT 59.381 45.455 0.00 0.00 0.00 3.16
4048 4515 4.960938 AGAACTGTTGCAAGTCATGACTA 58.039 39.130 28.10 10.78 41.58 2.59
4109 4576 6.072728 TGTGTGTCATATGGTTTACTTTGAGC 60.073 38.462 2.13 0.00 0.00 4.26
4179 4646 3.848272 TCCATCTTGTTTCGAAATGCC 57.152 42.857 14.69 1.77 0.00 4.40
4188 4655 3.623060 TGTTTCGAAATGCCATCTAGAGC 59.377 43.478 14.69 0.00 0.00 4.09
4192 4659 2.224137 CGAAATGCCATCTAGAGCTGGA 60.224 50.000 15.34 0.05 33.33 3.86
4248 4717 1.533994 GGCCTGCCCTGTTCCTTTT 60.534 57.895 0.00 0.00 0.00 2.27
4249 4718 0.251608 GGCCTGCCCTGTTCCTTTTA 60.252 55.000 0.00 0.00 0.00 1.52
4250 4719 1.619704 GGCCTGCCCTGTTCCTTTTAT 60.620 52.381 0.00 0.00 0.00 1.40
4252 4721 2.688446 GCCTGCCCTGTTCCTTTTATAC 59.312 50.000 0.00 0.00 0.00 1.47
4254 4723 4.600062 CCTGCCCTGTTCCTTTTATACTT 58.400 43.478 0.00 0.00 0.00 2.24
4255 4724 4.399303 CCTGCCCTGTTCCTTTTATACTTG 59.601 45.833 0.00 0.00 0.00 3.16
4256 4725 4.993028 TGCCCTGTTCCTTTTATACTTGT 58.007 39.130 0.00 0.00 0.00 3.16
4257 4726 6.129414 TGCCCTGTTCCTTTTATACTTGTA 57.871 37.500 0.00 0.00 0.00 2.41
4258 4727 6.177610 TGCCCTGTTCCTTTTATACTTGTAG 58.822 40.000 0.00 0.00 0.00 2.74
4259 4728 5.066117 GCCCTGTTCCTTTTATACTTGTAGC 59.934 44.000 0.00 0.00 0.00 3.58
4260 4729 6.415573 CCCTGTTCCTTTTATACTTGTAGCT 58.584 40.000 0.00 0.00 0.00 3.32
4261 4730 7.562135 CCCTGTTCCTTTTATACTTGTAGCTA 58.438 38.462 0.00 0.00 0.00 3.32
4262 4731 7.711339 CCCTGTTCCTTTTATACTTGTAGCTAG 59.289 40.741 0.00 0.00 0.00 3.42
4263 4732 8.258708 CCTGTTCCTTTTATACTTGTAGCTAGT 58.741 37.037 0.00 0.00 0.00 2.57
4264 4733 8.997621 TGTTCCTTTTATACTTGTAGCTAGTG 57.002 34.615 0.00 0.00 0.00 2.74
4265 4734 8.591072 TGTTCCTTTTATACTTGTAGCTAGTGT 58.409 33.333 0.00 0.00 0.00 3.55
4266 4735 9.433153 GTTCCTTTTATACTTGTAGCTAGTGTT 57.567 33.333 0.00 0.00 0.00 3.32
4302 4771 1.888512 CACACAAATTCCAGGACAGGG 59.111 52.381 0.00 0.00 0.00 4.45
4338 4807 4.392940 AGCTCAGCTCAAACTTGTTGTAT 58.607 39.130 0.00 0.00 30.62 2.29
4339 4808 4.823989 AGCTCAGCTCAAACTTGTTGTATT 59.176 37.500 0.00 0.00 30.62 1.89
4342 4811 5.820131 TCAGCTCAAACTTGTTGTATTGTG 58.180 37.500 0.00 0.00 0.00 3.33
4345 4814 5.590259 AGCTCAAACTTGTTGTATTGTGACT 59.410 36.000 0.00 0.00 0.00 3.41
4360 4829 9.467258 TGTATTGTGACTAGTGTTTTGTAGTAC 57.533 33.333 0.00 0.00 29.34 2.73
4401 4870 8.902806 TGTTTTAGATATTGATGATGTTGACCC 58.097 33.333 0.00 0.00 0.00 4.46
4402 4871 9.125026 GTTTTAGATATTGATGATGTTGACCCT 57.875 33.333 0.00 0.00 0.00 4.34
4403 4872 9.699410 TTTTAGATATTGATGATGTTGACCCTT 57.301 29.630 0.00 0.00 0.00 3.95
4405 4874 9.699410 TTAGATATTGATGATGTTGACCCTTTT 57.301 29.630 0.00 0.00 0.00 2.27
4406 4875 8.599624 AGATATTGATGATGTTGACCCTTTTT 57.400 30.769 0.00 0.00 0.00 1.94
4407 4876 8.472413 AGATATTGATGATGTTGACCCTTTTTG 58.528 33.333 0.00 0.00 0.00 2.44
4409 4878 5.710513 TGATGATGTTGACCCTTTTTGAG 57.289 39.130 0.00 0.00 0.00 3.02
4410 4879 5.139727 TGATGATGTTGACCCTTTTTGAGT 58.860 37.500 0.00 0.00 0.00 3.41
4411 4880 6.303054 TGATGATGTTGACCCTTTTTGAGTA 58.697 36.000 0.00 0.00 0.00 2.59
4412 4881 6.206634 TGATGATGTTGACCCTTTTTGAGTAC 59.793 38.462 0.00 0.00 0.00 2.73
4413 4882 5.690865 TGATGTTGACCCTTTTTGAGTACT 58.309 37.500 0.00 0.00 0.00 2.73
4414 4883 5.763204 TGATGTTGACCCTTTTTGAGTACTC 59.237 40.000 16.32 16.32 0.00 2.59
4418 4887 3.326880 TGACCCTTTTTGAGTACTCCCTC 59.673 47.826 20.11 0.00 0.00 4.30
4420 4889 3.328050 ACCCTTTTTGAGTACTCCCTCTG 59.672 47.826 20.11 7.69 32.50 3.35
4423 4892 4.998033 CCTTTTTGAGTACTCCCTCTGTTC 59.002 45.833 20.11 0.00 32.50 3.18
4426 4895 4.873746 TTGAGTACTCCCTCTGTTCAAG 57.126 45.455 20.11 0.00 32.50 3.02
4428 4897 4.480115 TGAGTACTCCCTCTGTTCAAGAA 58.520 43.478 20.11 0.00 33.37 2.52
4429 4898 4.899457 TGAGTACTCCCTCTGTTCAAGAAA 59.101 41.667 20.11 0.00 33.37 2.52
4430 4899 5.011125 TGAGTACTCCCTCTGTTCAAGAAAG 59.989 44.000 20.11 0.00 33.37 2.62
4431 4900 3.133141 ACTCCCTCTGTTCAAGAAAGC 57.867 47.619 0.00 0.00 33.37 3.51
4432 4901 2.708325 ACTCCCTCTGTTCAAGAAAGCT 59.292 45.455 0.00 0.00 33.37 3.74
4433 4902 3.137360 ACTCCCTCTGTTCAAGAAAGCTT 59.863 43.478 0.00 0.00 33.37 3.74
4446 4915 5.458891 CAAGAAAGCTTGTCTCTCAAATGG 58.541 41.667 0.00 0.00 45.10 3.16
4447 4916 4.978099 AGAAAGCTTGTCTCTCAAATGGA 58.022 39.130 0.00 0.00 35.48 3.41
4448 4917 5.568392 AGAAAGCTTGTCTCTCAAATGGAT 58.432 37.500 0.00 0.00 35.48 3.41
4449 4918 5.415077 AGAAAGCTTGTCTCTCAAATGGATG 59.585 40.000 0.00 0.00 35.48 3.51
4450 4919 4.298103 AGCTTGTCTCTCAAATGGATGT 57.702 40.909 0.00 0.00 35.48 3.06
4451 4920 5.426689 AGCTTGTCTCTCAAATGGATGTA 57.573 39.130 0.00 0.00 35.48 2.29
4452 4921 5.999044 AGCTTGTCTCTCAAATGGATGTAT 58.001 37.500 0.00 0.00 35.48 2.29
4453 4922 6.054295 AGCTTGTCTCTCAAATGGATGTATC 58.946 40.000 0.00 0.00 35.48 2.24
4454 4923 6.054295 GCTTGTCTCTCAAATGGATGTATCT 58.946 40.000 0.00 0.00 35.48 1.98
4455 4924 7.070447 AGCTTGTCTCTCAAATGGATGTATCTA 59.930 37.037 0.00 0.00 35.48 1.98
4456 4925 7.384660 GCTTGTCTCTCAAATGGATGTATCTAG 59.615 40.741 0.00 0.00 35.48 2.43
4457 4926 6.753180 TGTCTCTCAAATGGATGTATCTAGC 58.247 40.000 0.00 0.00 0.00 3.42
4458 4927 6.324770 TGTCTCTCAAATGGATGTATCTAGCA 59.675 38.462 0.00 0.00 0.00 3.49
4459 4928 6.644592 GTCTCTCAAATGGATGTATCTAGCAC 59.355 42.308 0.00 0.00 0.00 4.40
4460 4929 5.858381 TCTCAAATGGATGTATCTAGCACC 58.142 41.667 0.00 0.00 0.00 5.01
4461 4930 5.366477 TCTCAAATGGATGTATCTAGCACCA 59.634 40.000 0.00 0.00 0.00 4.17
4462 4931 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
4463 4932 6.422333 TCAAATGGATGTATCTAGCACCAAA 58.578 36.000 0.00 0.00 0.00 3.28
4464 4933 6.543465 TCAAATGGATGTATCTAGCACCAAAG 59.457 38.462 0.00 0.00 0.00 2.77
4465 4934 5.636903 ATGGATGTATCTAGCACCAAAGT 57.363 39.130 0.00 0.00 0.00 2.66
4466 4935 5.435686 TGGATGTATCTAGCACCAAAGTT 57.564 39.130 0.00 0.00 0.00 2.66
4467 4936 6.553953 TGGATGTATCTAGCACCAAAGTTA 57.446 37.500 0.00 0.00 0.00 2.24
4468 4937 6.582636 TGGATGTATCTAGCACCAAAGTTAG 58.417 40.000 0.00 0.00 0.00 2.34
4469 4938 6.156256 TGGATGTATCTAGCACCAAAGTTAGT 59.844 38.462 0.00 0.00 0.00 2.24
4470 4939 6.480320 GGATGTATCTAGCACCAAAGTTAGTG 59.520 42.308 2.33 2.33 37.05 2.74
4481 4950 7.470289 CACCAAAGTTAGTGCTAGATACATC 57.530 40.000 0.00 0.00 0.00 3.06
4482 4951 6.480320 CACCAAAGTTAGTGCTAGATACATCC 59.520 42.308 0.00 0.00 0.00 3.51
4483 4952 6.156256 ACCAAAGTTAGTGCTAGATACATCCA 59.844 38.462 0.00 0.00 0.00 3.41
4484 4953 7.147479 ACCAAAGTTAGTGCTAGATACATCCAT 60.147 37.037 0.00 0.00 0.00 3.41
4485 4954 7.716998 CCAAAGTTAGTGCTAGATACATCCATT 59.283 37.037 0.00 0.00 0.00 3.16
4486 4955 9.113838 CAAAGTTAGTGCTAGATACATCCATTT 57.886 33.333 0.00 0.00 0.00 2.32
4487 4956 8.668510 AAGTTAGTGCTAGATACATCCATTTG 57.331 34.615 0.00 0.00 0.00 2.32
4488 4957 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
4489 4958 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
4490 4959 6.737720 AGTGCTAGATACATCCATTTGAGA 57.262 37.500 0.00 0.00 0.00 3.27
4491 4960 6.757237 AGTGCTAGATACATCCATTTGAGAG 58.243 40.000 0.00 0.00 0.00 3.20
4492 4961 6.552725 AGTGCTAGATACATCCATTTGAGAGA 59.447 38.462 0.00 0.00 0.00 3.10
4493 4962 6.644592 GTGCTAGATACATCCATTTGAGAGAC 59.355 42.308 0.00 0.00 0.00 3.36
4494 4963 6.324770 TGCTAGATACATCCATTTGAGAGACA 59.675 38.462 0.00 0.00 0.00 3.41
4495 4964 7.147672 TGCTAGATACATCCATTTGAGAGACAA 60.148 37.037 0.00 0.00 36.65 3.18
4496 4965 7.384660 GCTAGATACATCCATTTGAGAGACAAG 59.615 40.741 0.00 0.00 39.77 3.16
4497 4966 7.192852 AGATACATCCATTTGAGAGACAAGT 57.807 36.000 0.00 0.00 39.77 3.16
4498 4967 7.628234 AGATACATCCATTTGAGAGACAAGTT 58.372 34.615 0.00 0.00 39.77 2.66
4499 4968 8.105829 AGATACATCCATTTGAGAGACAAGTTT 58.894 33.333 0.00 0.00 39.77 2.66
4500 4969 6.966534 ACATCCATTTGAGAGACAAGTTTT 57.033 33.333 0.00 0.00 39.77 2.43
4501 4970 7.352079 ACATCCATTTGAGAGACAAGTTTTT 57.648 32.000 0.00 0.00 39.77 1.94
4518 4987 3.672767 TTTTTCGGACAGAGGGAGTAC 57.327 47.619 0.00 0.00 0.00 2.73
4597 5066 7.377766 TGACCAATCTTGATAAGCTTTGTAC 57.622 36.000 3.20 0.00 0.00 2.90
4601 5070 8.893727 ACCAATCTTGATAAGCTTTGTACATAC 58.106 33.333 3.20 0.00 0.00 2.39
4602 5071 9.113838 CCAATCTTGATAAGCTTTGTACATACT 57.886 33.333 3.20 0.00 0.00 2.12
4604 5073 8.894768 ATCTTGATAAGCTTTGTACATACTCC 57.105 34.615 3.20 0.00 0.00 3.85
4605 5074 7.272978 TCTTGATAAGCTTTGTACATACTCCC 58.727 38.462 3.20 0.00 0.00 4.30
4606 5075 6.808321 TGATAAGCTTTGTACATACTCCCT 57.192 37.500 3.20 0.00 0.00 4.20
4607 5076 6.817184 TGATAAGCTTTGTACATACTCCCTC 58.183 40.000 3.20 0.00 0.00 4.30
4608 5077 6.611642 TGATAAGCTTTGTACATACTCCCTCT 59.388 38.462 3.20 0.00 0.00 3.69
4609 5078 4.744795 AGCTTTGTACATACTCCCTCTG 57.255 45.455 0.00 0.00 0.00 3.35
4610 5079 4.097418 AGCTTTGTACATACTCCCTCTGT 58.903 43.478 0.00 0.00 0.00 3.41
4611 5080 5.269991 AGCTTTGTACATACTCCCTCTGTA 58.730 41.667 0.00 0.00 0.00 2.74
4612 5081 5.720041 AGCTTTGTACATACTCCCTCTGTAA 59.280 40.000 0.00 0.00 0.00 2.41
4613 5082 6.212791 AGCTTTGTACATACTCCCTCTGTAAA 59.787 38.462 0.00 0.00 0.00 2.01
4614 5083 6.313164 GCTTTGTACATACTCCCTCTGTAAAC 59.687 42.308 0.00 0.00 0.00 2.01
4615 5084 7.549147 TTTGTACATACTCCCTCTGTAAACT 57.451 36.000 0.00 0.00 0.00 2.66
4616 5085 7.549147 TTGTACATACTCCCTCTGTAAACTT 57.451 36.000 0.00 0.00 0.00 2.66
4617 5086 8.654485 TTGTACATACTCCCTCTGTAAACTTA 57.346 34.615 0.00 0.00 0.00 2.24
4618 5087 8.059798 TGTACATACTCCCTCTGTAAACTTAC 57.940 38.462 0.00 0.00 0.00 2.34
4619 5088 7.670979 TGTACATACTCCCTCTGTAAACTTACA 59.329 37.037 0.00 2.49 41.06 2.41
4639 5108 9.170734 ACTTACAGTATACGAGTGTTTAGATCA 57.829 33.333 12.46 0.00 42.07 2.92
4640 5109 9.435802 CTTACAGTATACGAGTGTTTAGATCAC 57.564 37.037 12.46 0.00 42.07 3.06
4641 5110 7.627298 ACAGTATACGAGTGTTTAGATCACT 57.373 36.000 0.00 0.00 46.86 3.41
4642 5111 8.728337 ACAGTATACGAGTGTTTAGATCACTA 57.272 34.615 0.00 0.00 44.68 2.74
4643 5112 9.170734 ACAGTATACGAGTGTTTAGATCACTAA 57.829 33.333 0.00 0.00 44.68 2.24
4644 5113 9.999009 CAGTATACGAGTGTTTAGATCACTAAA 57.001 33.333 0.00 0.00 44.68 1.85
4649 5118 8.108551 ACGAGTGTTTAGATCACTAAAGTAGT 57.891 34.615 0.00 0.00 45.42 2.73
4650 5119 8.574737 ACGAGTGTTTAGATCACTAAAGTAGTT 58.425 33.333 0.00 0.00 45.42 2.24
4651 5120 9.408069 CGAGTGTTTAGATCACTAAAGTAGTTT 57.592 33.333 0.37 0.37 45.42 2.66
4659 5128 8.068892 AGATCACTAAAGTAGTTTACAGAGGG 57.931 38.462 0.00 0.00 36.76 4.30
4660 5129 7.894364 AGATCACTAAAGTAGTTTACAGAGGGA 59.106 37.037 0.00 0.00 36.76 4.20
4661 5130 7.463961 TCACTAAAGTAGTTTACAGAGGGAG 57.536 40.000 0.00 0.00 36.76 4.30
4662 5131 7.008941 TCACTAAAGTAGTTTACAGAGGGAGT 58.991 38.462 0.00 0.00 36.76 3.85
4663 5132 8.166061 TCACTAAAGTAGTTTACAGAGGGAGTA 58.834 37.037 0.00 0.00 36.76 2.59
4664 5133 8.968969 CACTAAAGTAGTTTACAGAGGGAGTAT 58.031 37.037 0.00 0.00 36.76 2.12
4673 5142 9.261035 AGTTTACAGAGGGAGTATATATCATGG 57.739 37.037 0.00 0.00 0.00 3.66
4674 5143 7.661536 TTACAGAGGGAGTATATATCATGGC 57.338 40.000 0.00 0.00 0.00 4.40
4675 5144 4.965532 ACAGAGGGAGTATATATCATGGCC 59.034 45.833 0.00 0.00 0.00 5.36
4676 5145 4.964897 CAGAGGGAGTATATATCATGGCCA 59.035 45.833 8.56 8.56 0.00 5.36
4677 5146 5.426509 CAGAGGGAGTATATATCATGGCCAA 59.573 44.000 10.96 0.00 0.00 4.52
4678 5147 6.032039 AGAGGGAGTATATATCATGGCCAAA 58.968 40.000 10.96 0.17 0.00 3.28
4679 5148 6.505344 AGAGGGAGTATATATCATGGCCAAAA 59.495 38.462 10.96 0.00 0.00 2.44
4680 5149 7.185304 AGAGGGAGTATATATCATGGCCAAAAT 59.815 37.037 10.96 9.19 0.00 1.82
4681 5150 7.712537 AGGGAGTATATATCATGGCCAAAATT 58.287 34.615 10.96 0.00 0.00 1.82
4682 5151 8.845793 AGGGAGTATATATCATGGCCAAAATTA 58.154 33.333 10.96 0.00 0.00 1.40
4683 5152 9.125026 GGGAGTATATATCATGGCCAAAATTAG 57.875 37.037 10.96 0.00 0.00 1.73
4684 5153 9.905713 GGAGTATATATCATGGCCAAAATTAGA 57.094 33.333 10.96 1.29 0.00 2.10
4692 5161 7.670009 TCATGGCCAAAATTAGAAATGTTTG 57.330 32.000 10.96 0.00 0.00 2.93
4693 5162 7.448420 TCATGGCCAAAATTAGAAATGTTTGA 58.552 30.769 10.96 0.00 33.70 2.69
4694 5163 7.387397 TCATGGCCAAAATTAGAAATGTTTGAC 59.613 33.333 10.96 0.00 33.70 3.18
4695 5164 5.994668 TGGCCAAAATTAGAAATGTTTGACC 59.005 36.000 0.61 0.00 34.97 4.02
4696 5165 5.994668 GGCCAAAATTAGAAATGTTTGACCA 59.005 36.000 0.00 0.00 34.65 4.02
4697 5166 6.073276 GGCCAAAATTAGAAATGTTTGACCAC 60.073 38.462 0.00 0.00 34.65 4.16
4698 5167 6.705825 GCCAAAATTAGAAATGTTTGACCACT 59.294 34.615 0.00 0.00 33.70 4.00
4699 5168 7.870445 GCCAAAATTAGAAATGTTTGACCACTA 59.130 33.333 0.00 0.00 33.70 2.74
4700 5169 9.191995 CCAAAATTAGAAATGTTTGACCACTAC 57.808 33.333 0.00 0.00 33.70 2.73
4701 5170 9.965824 CAAAATTAGAAATGTTTGACCACTACT 57.034 29.630 0.00 0.00 33.70 2.57
4704 5173 7.900782 TTAGAAATGTTTGACCACTACTAGC 57.099 36.000 0.00 0.00 0.00 3.42
4705 5174 6.115448 AGAAATGTTTGACCACTACTAGCT 57.885 37.500 0.00 0.00 0.00 3.32
4706 5175 7.241042 AGAAATGTTTGACCACTACTAGCTA 57.759 36.000 0.00 0.00 0.00 3.32
4707 5176 7.324178 AGAAATGTTTGACCACTACTAGCTAG 58.676 38.462 19.44 19.44 0.00 3.42
4708 5177 5.599999 ATGTTTGACCACTACTAGCTAGG 57.400 43.478 24.35 9.92 0.00 3.02
4709 5178 4.413760 TGTTTGACCACTACTAGCTAGGT 58.586 43.478 24.35 13.21 34.76 3.08
4710 5179 4.219944 TGTTTGACCACTACTAGCTAGGTG 59.780 45.833 24.35 20.88 31.57 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.264749 ATAGGACCAGCGCACCAGAA 61.265 55.000 11.47 0.00 0.00 3.02
1 2 1.685765 ATAGGACCAGCGCACCAGA 60.686 57.895 11.47 0.33 0.00 3.86
2 3 1.522355 CATAGGACCAGCGCACCAG 60.522 63.158 11.47 0.00 0.00 4.00
3 4 2.584064 CATAGGACCAGCGCACCA 59.416 61.111 11.47 0.00 0.00 4.17
4 5 2.203070 CCATAGGACCAGCGCACC 60.203 66.667 11.47 7.54 0.00 5.01
5 6 2.203070 CCCATAGGACCAGCGCAC 60.203 66.667 11.47 0.00 33.47 5.34
6 7 3.479203 CCCCATAGGACCAGCGCA 61.479 66.667 11.47 0.00 38.24 6.09
7 8 4.937431 GCCCCATAGGACCAGCGC 62.937 72.222 0.00 0.00 38.24 5.92
8 9 4.256180 GGCCCCATAGGACCAGCG 62.256 72.222 0.00 0.00 37.96 5.18
14 15 0.645496 TGTCCTAAGGCCCCATAGGA 59.355 55.000 20.33 20.33 42.10 2.94
15 16 1.143073 GTTGTCCTAAGGCCCCATAGG 59.857 57.143 17.06 17.06 38.38 2.57
16 17 1.202651 CGTTGTCCTAAGGCCCCATAG 60.203 57.143 0.00 0.00 0.00 2.23
17 18 0.834612 CGTTGTCCTAAGGCCCCATA 59.165 55.000 0.00 0.00 0.00 2.74
18 19 0.912487 TCGTTGTCCTAAGGCCCCAT 60.912 55.000 0.00 0.00 0.00 4.00
19 20 1.536907 TCGTTGTCCTAAGGCCCCA 60.537 57.895 0.00 0.00 0.00 4.96
20 21 1.078637 GTCGTTGTCCTAAGGCCCC 60.079 63.158 0.00 0.00 0.00 5.80
21 22 0.323957 AAGTCGTTGTCCTAAGGCCC 59.676 55.000 0.00 0.00 0.00 5.80
22 23 2.074576 GAAAGTCGTTGTCCTAAGGCC 58.925 52.381 0.00 0.00 0.00 5.19
23 24 2.074576 GGAAAGTCGTTGTCCTAAGGC 58.925 52.381 0.00 0.00 0.00 4.35
24 25 2.029649 TCGGAAAGTCGTTGTCCTAAGG 60.030 50.000 0.00 0.00 0.00 2.69
25 26 2.985139 GTCGGAAAGTCGTTGTCCTAAG 59.015 50.000 0.00 0.00 0.00 2.18
26 27 2.361757 TGTCGGAAAGTCGTTGTCCTAA 59.638 45.455 0.00 0.00 0.00 2.69
27 28 1.955778 TGTCGGAAAGTCGTTGTCCTA 59.044 47.619 0.00 0.00 0.00 2.94
28 29 0.748450 TGTCGGAAAGTCGTTGTCCT 59.252 50.000 0.00 0.00 0.00 3.85
29 30 1.574134 TTGTCGGAAAGTCGTTGTCC 58.426 50.000 0.00 0.00 0.00 4.02
30 31 3.057734 AGATTGTCGGAAAGTCGTTGTC 58.942 45.455 0.00 0.00 0.00 3.18
31 32 3.107642 AGATTGTCGGAAAGTCGTTGT 57.892 42.857 0.00 0.00 0.00 3.32
32 33 3.367025 GGTAGATTGTCGGAAAGTCGTTG 59.633 47.826 0.00 0.00 0.00 4.10
33 34 3.006110 TGGTAGATTGTCGGAAAGTCGTT 59.994 43.478 0.00 0.00 0.00 3.85
34 35 2.559668 TGGTAGATTGTCGGAAAGTCGT 59.440 45.455 0.00 0.00 0.00 4.34
35 36 3.226346 TGGTAGATTGTCGGAAAGTCG 57.774 47.619 0.00 0.00 0.00 4.18
36 37 3.309954 GCATGGTAGATTGTCGGAAAGTC 59.690 47.826 0.00 0.00 0.00 3.01
37 38 3.055094 AGCATGGTAGATTGTCGGAAAGT 60.055 43.478 0.00 0.00 0.00 2.66
38 39 3.535561 AGCATGGTAGATTGTCGGAAAG 58.464 45.455 0.00 0.00 0.00 2.62
39 40 3.627395 AGCATGGTAGATTGTCGGAAA 57.373 42.857 0.00 0.00 0.00 3.13
40 41 3.531538 GAAGCATGGTAGATTGTCGGAA 58.468 45.455 0.00 0.00 0.00 4.30
41 42 2.481276 CGAAGCATGGTAGATTGTCGGA 60.481 50.000 0.00 0.00 0.00 4.55
42 43 1.860950 CGAAGCATGGTAGATTGTCGG 59.139 52.381 0.00 0.00 0.00 4.79
43 44 2.809446 TCGAAGCATGGTAGATTGTCG 58.191 47.619 0.00 2.71 0.00 4.35
44 45 4.371786 TCATCGAAGCATGGTAGATTGTC 58.628 43.478 11.59 0.00 0.00 3.18
45 46 4.375272 CTCATCGAAGCATGGTAGATTGT 58.625 43.478 11.59 0.00 0.00 2.71
46 47 3.744942 CCTCATCGAAGCATGGTAGATTG 59.255 47.826 11.59 8.58 0.00 2.67
47 48 3.244353 CCCTCATCGAAGCATGGTAGATT 60.244 47.826 11.59 0.00 0.00 2.40
48 49 2.301296 CCCTCATCGAAGCATGGTAGAT 59.699 50.000 0.00 3.86 0.00 1.98
49 50 1.688735 CCCTCATCGAAGCATGGTAGA 59.311 52.381 0.00 1.24 0.00 2.59
50 51 1.688735 TCCCTCATCGAAGCATGGTAG 59.311 52.381 0.00 0.00 0.00 3.18
51 52 1.688735 CTCCCTCATCGAAGCATGGTA 59.311 52.381 0.00 0.00 0.00 3.25
52 53 0.467384 CTCCCTCATCGAAGCATGGT 59.533 55.000 0.00 0.00 0.00 3.55
53 54 0.250209 CCTCCCTCATCGAAGCATGG 60.250 60.000 0.00 0.00 0.00 3.66
54 55 0.755079 TCCTCCCTCATCGAAGCATG 59.245 55.000 0.00 0.00 0.00 4.06
55 56 1.047002 CTCCTCCCTCATCGAAGCAT 58.953 55.000 0.00 0.00 0.00 3.79
56 57 1.680522 GCTCCTCCCTCATCGAAGCA 61.681 60.000 0.00 0.00 0.00 3.91
57 58 1.068921 GCTCCTCCCTCATCGAAGC 59.931 63.158 0.00 0.00 0.00 3.86
58 59 1.103987 TCGCTCCTCCCTCATCGAAG 61.104 60.000 0.00 0.00 0.00 3.79
59 60 0.468214 ATCGCTCCTCCCTCATCGAA 60.468 55.000 0.00 0.00 0.00 3.71
60 61 1.151679 ATCGCTCCTCCCTCATCGA 59.848 57.895 0.00 0.00 0.00 3.59
61 62 1.288439 CATCGCTCCTCCCTCATCG 59.712 63.158 0.00 0.00 0.00 3.84
62 63 1.670590 CCATCGCTCCTCCCTCATC 59.329 63.158 0.00 0.00 0.00 2.92
63 64 2.515071 GCCATCGCTCCTCCCTCAT 61.515 63.158 0.00 0.00 0.00 2.90
64 65 3.157252 GCCATCGCTCCTCCCTCA 61.157 66.667 0.00 0.00 0.00 3.86
65 66 4.292178 CGCCATCGCTCCTCCCTC 62.292 72.222 0.00 0.00 0.00 4.30
69 70 2.715532 TATTGCCGCCATCGCTCCTC 62.716 60.000 0.00 0.00 0.00 3.71
70 71 2.807107 TATTGCCGCCATCGCTCCT 61.807 57.895 0.00 0.00 0.00 3.69
71 72 2.280797 TATTGCCGCCATCGCTCC 60.281 61.111 0.00 0.00 0.00 4.70
72 73 2.939022 GTATTGCCGCCATCGCTC 59.061 61.111 0.00 0.00 0.00 5.03
73 74 2.967076 CGTATTGCCGCCATCGCT 60.967 61.111 0.00 0.00 0.00 4.93
74 75 2.695712 GAACGTATTGCCGCCATCGC 62.696 60.000 0.00 0.00 0.00 4.58
75 76 1.275657 GAACGTATTGCCGCCATCG 59.724 57.895 0.00 0.00 0.00 3.84
76 77 1.275657 CGAACGTATTGCCGCCATC 59.724 57.895 0.00 0.00 0.00 3.51
77 78 2.177580 CCGAACGTATTGCCGCCAT 61.178 57.895 0.00 0.00 0.00 4.40
78 79 2.816083 CCGAACGTATTGCCGCCA 60.816 61.111 0.00 0.00 0.00 5.69
79 80 4.232248 GCCGAACGTATTGCCGCC 62.232 66.667 0.00 0.00 0.00 6.13
80 81 3.151673 GAGCCGAACGTATTGCCGC 62.152 63.158 0.00 0.00 0.00 6.53
81 82 2.856346 CGAGCCGAACGTATTGCCG 61.856 63.158 0.00 0.00 0.00 5.69
82 83 3.003478 CGAGCCGAACGTATTGCC 58.997 61.111 0.00 0.00 0.00 4.52
83 84 1.693083 AAGCGAGCCGAACGTATTGC 61.693 55.000 0.00 0.00 0.00 3.56
84 85 0.297820 GAAGCGAGCCGAACGTATTG 59.702 55.000 0.00 0.00 0.00 1.90
85 86 0.108992 TGAAGCGAGCCGAACGTATT 60.109 50.000 0.00 0.00 0.00 1.89
86 87 0.525668 CTGAAGCGAGCCGAACGTAT 60.526 55.000 0.00 0.00 0.00 3.06
87 88 1.154093 CTGAAGCGAGCCGAACGTA 60.154 57.895 0.00 0.00 0.00 3.57
88 89 2.430921 CTGAAGCGAGCCGAACGT 60.431 61.111 0.00 0.00 0.00 3.99
89 90 3.843240 GCTGAAGCGAGCCGAACG 61.843 66.667 0.00 0.00 32.35 3.95
99 100 1.009389 ACGACTACAAGCGCTGAAGC 61.009 55.000 12.58 4.68 37.78 3.86
100 101 0.985549 GACGACTACAAGCGCTGAAG 59.014 55.000 12.58 11.71 0.00 3.02
101 102 0.728129 CGACGACTACAAGCGCTGAA 60.728 55.000 12.58 0.00 0.00 3.02
102 103 1.154282 CGACGACTACAAGCGCTGA 60.154 57.895 12.58 0.00 0.00 4.26
103 104 2.778997 GCGACGACTACAAGCGCTG 61.779 63.158 12.58 8.13 43.85 5.18
104 105 2.504244 GCGACGACTACAAGCGCT 60.504 61.111 2.64 2.64 43.85 5.92
106 107 0.372679 TCTAGCGACGACTACAAGCG 59.627 55.000 0.00 0.00 0.00 4.68
107 108 2.376956 CATCTAGCGACGACTACAAGC 58.623 52.381 0.00 0.00 0.00 4.01
108 109 2.355132 ACCATCTAGCGACGACTACAAG 59.645 50.000 0.00 0.00 0.00 3.16
109 110 2.353889 GACCATCTAGCGACGACTACAA 59.646 50.000 0.00 0.00 0.00 2.41
110 111 1.938577 GACCATCTAGCGACGACTACA 59.061 52.381 0.00 0.00 0.00 2.74
111 112 2.211806 AGACCATCTAGCGACGACTAC 58.788 52.381 0.00 0.00 0.00 2.73
112 113 2.616634 AGACCATCTAGCGACGACTA 57.383 50.000 0.00 0.00 0.00 2.59
113 114 2.211806 GTAGACCATCTAGCGACGACT 58.788 52.381 0.00 0.00 28.01 4.18
114 115 1.070710 CGTAGACCATCTAGCGACGAC 60.071 57.143 0.00 0.00 29.07 4.34
115 116 1.202452 TCGTAGACCATCTAGCGACGA 60.202 52.381 0.00 0.00 33.12 4.20
116 117 1.215244 TCGTAGACCATCTAGCGACG 58.785 55.000 0.00 0.00 32.17 5.12
117 118 2.286891 GGTTCGTAGACCATCTAGCGAC 60.287 54.545 8.86 6.24 34.67 5.19
118 119 1.945394 GGTTCGTAGACCATCTAGCGA 59.055 52.381 0.00 6.50 34.32 4.93
119 120 1.674441 TGGTTCGTAGACCATCTAGCG 59.326 52.381 4.39 0.00 33.95 4.26
120 121 3.643763 CATGGTTCGTAGACCATCTAGC 58.356 50.000 14.80 0.00 43.11 3.42
121 122 3.643763 GCATGGTTCGTAGACCATCTAG 58.356 50.000 14.80 8.13 43.11 2.43
122 123 2.034179 CGCATGGTTCGTAGACCATCTA 59.966 50.000 14.80 0.00 43.11 1.98
123 124 1.202417 CGCATGGTTCGTAGACCATCT 60.202 52.381 14.80 0.00 43.11 2.90
124 125 1.209128 CGCATGGTTCGTAGACCATC 58.791 55.000 14.80 10.48 43.11 3.51
125 126 0.535335 ACGCATGGTTCGTAGACCAT 59.465 50.000 12.78 12.78 44.80 3.55
126 127 0.389296 CACGCATGGTTCGTAGACCA 60.389 55.000 9.74 9.74 40.70 4.02
127 128 0.108992 TCACGCATGGTTCGTAGACC 60.109 55.000 0.00 0.00 38.19 3.85
128 129 1.922570 ATCACGCATGGTTCGTAGAC 58.077 50.000 0.00 0.00 38.19 2.59
129 130 2.665649 AATCACGCATGGTTCGTAGA 57.334 45.000 0.00 0.00 38.19 2.59
130 131 3.740044 AAAATCACGCATGGTTCGTAG 57.260 42.857 0.00 0.00 38.19 3.51
131 132 5.804692 ATAAAAATCACGCATGGTTCGTA 57.195 34.783 0.00 0.00 38.19 3.43
132 133 4.695217 ATAAAAATCACGCATGGTTCGT 57.305 36.364 0.00 0.00 41.28 3.85
133 134 6.690957 ACATAATAAAAATCACGCATGGTTCG 59.309 34.615 0.00 0.00 0.00 3.95
134 135 7.985634 ACATAATAAAAATCACGCATGGTTC 57.014 32.000 0.00 0.00 0.00 3.62
135 136 8.770438 AAACATAATAAAAATCACGCATGGTT 57.230 26.923 0.00 0.00 0.00 3.67
136 137 9.515020 CTAAACATAATAAAAATCACGCATGGT 57.485 29.630 0.00 0.00 0.00 3.55
137 138 9.515020 ACTAAACATAATAAAAATCACGCATGG 57.485 29.630 0.00 0.00 0.00 3.66
150 151 8.167985 GCGGTACAACGAAACTAAACATAATAA 58.832 33.333 0.00 0.00 35.47 1.40
151 152 7.462593 CGCGGTACAACGAAACTAAACATAATA 60.463 37.037 0.00 0.00 35.47 0.98
152 153 6.536688 GCGGTACAACGAAACTAAACATAAT 58.463 36.000 0.00 0.00 35.47 1.28
153 154 5.388268 CGCGGTACAACGAAACTAAACATAA 60.388 40.000 0.00 0.00 35.47 1.90
154 155 4.089780 CGCGGTACAACGAAACTAAACATA 59.910 41.667 0.00 0.00 35.47 2.29
155 156 3.120923 CGCGGTACAACGAAACTAAACAT 60.121 43.478 0.00 0.00 35.47 2.71
156 157 2.218302 CGCGGTACAACGAAACTAAACA 59.782 45.455 0.00 0.00 35.47 2.83
157 158 2.470999 TCGCGGTACAACGAAACTAAAC 59.529 45.455 6.13 0.00 33.67 2.01
158 159 2.736978 TCGCGGTACAACGAAACTAAA 58.263 42.857 6.13 0.00 33.67 1.85
159 160 2.414058 TCGCGGTACAACGAAACTAA 57.586 45.000 6.13 0.00 33.67 2.24
160 161 2.095314 TCATCGCGGTACAACGAAACTA 60.095 45.455 6.13 0.00 39.87 2.24
161 162 1.065358 CATCGCGGTACAACGAAACT 58.935 50.000 6.13 0.00 39.87 2.66
162 163 1.062258 TCATCGCGGTACAACGAAAC 58.938 50.000 6.13 0.00 39.87 2.78
163 164 1.921887 GATCATCGCGGTACAACGAAA 59.078 47.619 6.13 5.82 39.87 3.46
164 165 1.552226 GATCATCGCGGTACAACGAA 58.448 50.000 6.13 0.00 39.87 3.85
165 166 0.590481 CGATCATCGCGGTACAACGA 60.590 55.000 6.13 11.24 40.68 3.85
166 167 0.590481 TCGATCATCGCGGTACAACG 60.590 55.000 6.13 6.23 40.21 4.10
167 168 1.517276 CTTCGATCATCGCGGTACAAC 59.483 52.381 6.13 0.00 40.21 3.32
168 169 1.402613 TCTTCGATCATCGCGGTACAA 59.597 47.619 6.13 0.00 40.21 2.41
169 170 1.018910 TCTTCGATCATCGCGGTACA 58.981 50.000 6.13 0.00 40.21 2.90
170 171 1.979469 CATCTTCGATCATCGCGGTAC 59.021 52.381 6.13 0.00 40.21 3.34
171 172 1.877443 TCATCTTCGATCATCGCGGTA 59.123 47.619 6.13 0.00 40.21 4.02
172 173 0.668535 TCATCTTCGATCATCGCGGT 59.331 50.000 6.13 0.00 40.21 5.68
173 174 1.770957 TTCATCTTCGATCATCGCGG 58.229 50.000 6.13 0.00 40.21 6.46
174 175 4.618912 ACTTATTCATCTTCGATCATCGCG 59.381 41.667 0.80 0.00 40.21 5.87
175 176 5.631096 TGACTTATTCATCTTCGATCATCGC 59.369 40.000 0.80 0.00 40.21 4.58
176 177 7.629027 TTGACTTATTCATCTTCGATCATCG 57.371 36.000 0.00 0.00 36.07 3.84
177 178 9.861138 CTTTTGACTTATTCATCTTCGATCATC 57.139 33.333 0.00 0.00 32.84 2.92
178 179 9.388506 ACTTTTGACTTATTCATCTTCGATCAT 57.611 29.630 0.00 0.00 32.84 2.45
179 180 8.777865 ACTTTTGACTTATTCATCTTCGATCA 57.222 30.769 0.00 0.00 32.84 2.92
182 183 9.273016 AGAAACTTTTGACTTATTCATCTTCGA 57.727 29.630 0.00 0.00 32.84 3.71
183 184 9.884465 AAGAAACTTTTGACTTATTCATCTTCG 57.116 29.630 0.00 0.00 32.84 3.79
186 187 9.354673 TGGAAGAAACTTTTGACTTATTCATCT 57.645 29.630 0.00 0.00 32.84 2.90
187 188 9.965824 TTGGAAGAAACTTTTGACTTATTCATC 57.034 29.630 0.00 0.00 32.84 2.92
206 207 6.471146 CATCTCTCCTCTTTCTTTTGGAAGA 58.529 40.000 0.00 0.00 40.07 2.87
207 208 5.647225 CCATCTCTCCTCTTTCTTTTGGAAG 59.353 44.000 0.00 0.00 35.16 3.46
208 209 5.564550 CCATCTCTCCTCTTTCTTTTGGAA 58.435 41.667 0.00 0.00 0.00 3.53
209 210 4.566488 GCCATCTCTCCTCTTTCTTTTGGA 60.566 45.833 0.00 0.00 0.00 3.53
210 211 3.693578 GCCATCTCTCCTCTTTCTTTTGG 59.306 47.826 0.00 0.00 0.00 3.28
211 212 4.330250 TGCCATCTCTCCTCTTTCTTTTG 58.670 43.478 0.00 0.00 0.00 2.44
212 213 4.647564 TGCCATCTCTCCTCTTTCTTTT 57.352 40.909 0.00 0.00 0.00 2.27
213 214 4.647564 TTGCCATCTCTCCTCTTTCTTT 57.352 40.909 0.00 0.00 0.00 2.52
214 215 4.858965 ATTGCCATCTCTCCTCTTTCTT 57.141 40.909 0.00 0.00 0.00 2.52
215 216 4.858965 AATTGCCATCTCTCCTCTTTCT 57.141 40.909 0.00 0.00 0.00 2.52
216 217 4.097589 CCAAATTGCCATCTCTCCTCTTTC 59.902 45.833 0.00 0.00 0.00 2.62
217 218 4.021916 CCAAATTGCCATCTCTCCTCTTT 58.978 43.478 0.00 0.00 0.00 2.52
218 219 3.267812 TCCAAATTGCCATCTCTCCTCTT 59.732 43.478 0.00 0.00 0.00 2.85
219 220 2.848694 TCCAAATTGCCATCTCTCCTCT 59.151 45.455 0.00 0.00 0.00 3.69
220 221 3.287867 TCCAAATTGCCATCTCTCCTC 57.712 47.619 0.00 0.00 0.00 3.71
221 222 3.359950 GTTCCAAATTGCCATCTCTCCT 58.640 45.455 0.00 0.00 0.00 3.69
222 223 2.098117 CGTTCCAAATTGCCATCTCTCC 59.902 50.000 0.00 0.00 0.00 3.71
223 224 3.009723 TCGTTCCAAATTGCCATCTCTC 58.990 45.455 0.00 0.00 0.00 3.20
224 225 3.071874 TCGTTCCAAATTGCCATCTCT 57.928 42.857 0.00 0.00 0.00 3.10
225 226 3.428045 CCTTCGTTCCAAATTGCCATCTC 60.428 47.826 0.00 0.00 0.00 2.75
298 304 9.760077 TTTGTAAAATAGTTCTTCTCGAGTTCT 57.240 29.630 13.13 7.43 0.00 3.01
323 329 9.284968 TGGAAATATTTCTTCTCGACTTCTTTT 57.715 29.630 23.85 0.00 37.35 2.27
324 330 8.722394 GTGGAAATATTTCTTCTCGACTTCTTT 58.278 33.333 23.85 0.00 37.35 2.52
325 331 8.097662 AGTGGAAATATTTCTTCTCGACTTCTT 58.902 33.333 23.85 1.05 37.35 2.52
330 336 6.036191 GTGGAGTGGAAATATTTCTTCTCGAC 59.964 42.308 27.99 27.99 37.78 4.20
333 339 5.590663 GGGTGGAGTGGAAATATTTCTTCTC 59.409 44.000 26.19 26.19 37.35 2.87
341 347 3.117512 GGATGTGGGTGGAGTGGAAATAT 60.118 47.826 0.00 0.00 0.00 1.28
355 361 4.776322 TGCGCGGAAGGATGTGGG 62.776 66.667 8.83 0.00 0.00 4.61
366 376 2.008697 CAAGGTCGTTTTTGCGCGG 61.009 57.895 8.83 0.00 0.00 6.46
389 399 1.865865 CGAGGGGTGTATTTCCGATG 58.134 55.000 0.00 0.00 0.00 3.84
428 443 1.475930 GGAAGGAGGATAAGCACTGGC 60.476 57.143 0.00 0.00 41.61 4.85
473 493 4.285790 AAGGAGGCCTGGTGGGGA 62.286 66.667 12.00 0.00 32.13 4.81
532 581 1.458588 GGAGCCGAGGAGGAGGAAT 60.459 63.158 0.00 0.00 45.00 3.01
533 582 2.042843 GGAGCCGAGGAGGAGGAA 60.043 66.667 0.00 0.00 45.00 3.36
590 646 2.196245 GGAATCAATCCCTGGGCGC 61.196 63.158 8.22 0.00 43.00 6.53
666 731 7.915397 GGCAGAAAATTTCTAATTCGATTGCTA 59.085 33.333 8.03 0.00 38.11 3.49
698 764 0.881159 ACAAAATCCGCGACGAACCA 60.881 50.000 8.23 0.00 0.00 3.67
739 829 1.268265 GAAATCAAACCGCCAATCGC 58.732 50.000 0.00 0.00 36.73 4.58
741 831 1.548269 TGGGAAATCAAACCGCCAATC 59.452 47.619 0.00 0.00 0.00 2.67
744 834 1.414158 TTTGGGAAATCAAACCGCCA 58.586 45.000 0.00 0.00 32.39 5.69
745 835 2.760634 ATTTGGGAAATCAAACCGCC 57.239 45.000 0.00 0.00 39.13 6.13
746 836 3.435327 GGAAATTTGGGAAATCAAACCGC 59.565 43.478 0.00 0.00 39.13 5.68
747 837 4.690280 CAGGAAATTTGGGAAATCAAACCG 59.310 41.667 0.00 0.00 39.13 4.44
748 838 5.003160 CCAGGAAATTTGGGAAATCAAACC 58.997 41.667 0.00 0.00 39.13 3.27
773 870 4.673375 CTGCAAGCACCAGGGGCT 62.673 66.667 11.81 11.81 45.15 5.19
817 930 6.867816 TGAACACCAGATCAATTTTATTGCAC 59.132 34.615 0.00 0.00 0.00 4.57
834 947 5.184864 CACCCTAATTTTAGCATGAACACCA 59.815 40.000 0.00 0.00 0.00 4.17
841 954 9.778741 TCTATCTAACACCCTAATTTTAGCATG 57.221 33.333 0.00 0.00 0.00 4.06
882 1000 5.756833 AGTAAAGAGTTGGGTTTAAGTGACG 59.243 40.000 0.00 0.00 0.00 4.35
967 1093 3.126879 TACCGCCACGACGACGAT 61.127 61.111 15.32 0.00 42.66 3.73
1242 1374 1.475403 TCTTGTCGATCCTGTCCCTC 58.525 55.000 0.00 0.00 0.00 4.30
1272 1404 2.049433 GTGCTCACGTACGTGGCT 60.049 61.111 37.56 14.76 45.43 4.75
1383 1515 4.078516 GGTTCCCCGACCACTCCG 62.079 72.222 0.00 0.00 39.57 4.63
1650 1782 1.129058 AAGAGTCCCCGTGTGAGTTT 58.871 50.000 0.00 0.00 0.00 2.66
1696 1828 9.973661 TGAAAGGAACTCTCAATAATGGAAATA 57.026 29.630 0.00 0.00 38.49 1.40
1698 1830 8.742777 CATGAAAGGAACTCTCAATAATGGAAA 58.257 33.333 0.00 0.00 38.49 3.13
1700 1832 7.405292 ACATGAAAGGAACTCTCAATAATGGA 58.595 34.615 0.00 0.00 38.49 3.41
1701 1833 7.636150 ACATGAAAGGAACTCTCAATAATGG 57.364 36.000 0.00 0.00 38.49 3.16
1707 1839 9.354673 AGAAAATAACATGAAAGGAACTCTCAA 57.645 29.630 0.00 0.00 38.49 3.02
1708 1840 8.924511 AGAAAATAACATGAAAGGAACTCTCA 57.075 30.769 0.00 0.00 38.49 3.27
1719 1851 8.282592 CAGACACGAGAAAGAAAATAACATGAA 58.717 33.333 0.00 0.00 0.00 2.57
1720 1852 7.441157 ACAGACACGAGAAAGAAAATAACATGA 59.559 33.333 0.00 0.00 0.00 3.07
1724 1856 6.347483 GGGACAGACACGAGAAAGAAAATAAC 60.347 42.308 0.00 0.00 0.00 1.89
1726 1858 5.011738 AGGGACAGACACGAGAAAGAAAATA 59.988 40.000 0.00 0.00 0.00 1.40
1727 1859 4.065789 GGGACAGACACGAGAAAGAAAAT 58.934 43.478 0.00 0.00 0.00 1.82
1730 1862 2.317040 AGGGACAGACACGAGAAAGAA 58.683 47.619 0.00 0.00 0.00 2.52
1731 1863 1.996798 AGGGACAGACACGAGAAAGA 58.003 50.000 0.00 0.00 0.00 2.52
1732 1864 2.821991 AAGGGACAGACACGAGAAAG 57.178 50.000 0.00 0.00 0.00 2.62
1733 1865 4.675976 TTAAAGGGACAGACACGAGAAA 57.324 40.909 0.00 0.00 0.00 2.52
1735 1867 7.123098 TGTTATATTAAAGGGACAGACACGAGA 59.877 37.037 0.00 0.00 0.00 4.04
1736 1868 7.262772 TGTTATATTAAAGGGACAGACACGAG 58.737 38.462 0.00 0.00 0.00 4.18
1738 1870 8.335356 CAATGTTATATTAAAGGGACAGACACG 58.665 37.037 0.00 0.00 0.00 4.49
1739 1871 9.174166 ACAATGTTATATTAAAGGGACAGACAC 57.826 33.333 0.00 0.00 0.00 3.67
1777 1909 3.317993 CCCCTCCCAATATGTTTTAAGCG 59.682 47.826 0.00 0.00 0.00 4.68
1816 1948 5.879237 TGTGCTAGAAAAATGCCGATTAAG 58.121 37.500 0.00 0.00 0.00 1.85
1875 2007 6.482641 CAGAGAGGATACATTTCAACTGATGG 59.517 42.308 0.00 0.00 41.41 3.51
1881 2013 3.879892 GCCCAGAGAGGATACATTTCAAC 59.120 47.826 0.00 0.00 41.22 3.18
1924 2056 2.254918 TGTTGCTGTCGTTGTTGTTG 57.745 45.000 0.00 0.00 0.00 3.33
1925 2057 2.030717 TGTTGTTGCTGTCGTTGTTGTT 60.031 40.909 0.00 0.00 0.00 2.83
1926 2058 1.537638 TGTTGTTGCTGTCGTTGTTGT 59.462 42.857 0.00 0.00 0.00 3.32
1927 2059 2.254918 TGTTGTTGCTGTCGTTGTTG 57.745 45.000 0.00 0.00 0.00 3.33
1928 2060 2.030717 TGTTGTTGTTGCTGTCGTTGTT 60.031 40.909 0.00 0.00 0.00 2.83
1929 2061 1.537638 TGTTGTTGTTGCTGTCGTTGT 59.462 42.857 0.00 0.00 0.00 3.32
1930 2062 2.254918 TGTTGTTGTTGCTGTCGTTG 57.745 45.000 0.00 0.00 0.00 4.10
1931 2063 2.030717 TGTTGTTGTTGTTGCTGTCGTT 60.031 40.909 0.00 0.00 0.00 3.85
1932 2064 1.537638 TGTTGTTGTTGTTGCTGTCGT 59.462 42.857 0.00 0.00 0.00 4.34
1933 2065 2.254918 TGTTGTTGTTGTTGCTGTCG 57.745 45.000 0.00 0.00 0.00 4.35
1934 2066 3.312828 TGTTGTTGTTGTTGTTGCTGTC 58.687 40.909 0.00 0.00 0.00 3.51
1935 2067 3.377346 TGTTGTTGTTGTTGTTGCTGT 57.623 38.095 0.00 0.00 0.00 4.40
1936 2068 3.492383 TGTTGTTGTTGTTGTTGTTGCTG 59.508 39.130 0.00 0.00 0.00 4.41
1937 2069 3.722147 TGTTGTTGTTGTTGTTGTTGCT 58.278 36.364 0.00 0.00 0.00 3.91
1938 2070 4.207599 GTTGTTGTTGTTGTTGTTGTTGC 58.792 39.130 0.00 0.00 0.00 4.17
1939 2071 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1940 2072 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1941 2073 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1942 2074 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1943 2075 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
1944 2076 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
1945 2077 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
1946 2078 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
1947 2079 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
1948 2080 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
1949 2081 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
1950 2082 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
1960 2092 6.959671 TTTGAACTAAAGGCTTTGTTGTTG 57.040 33.333 22.32 7.79 0.00 3.33
1979 2111 2.312390 GCCTACCCCAACTTGTTTTGA 58.688 47.619 0.00 0.00 0.00 2.69
1981 2113 1.062810 TGGCCTACCCCAACTTGTTTT 60.063 47.619 3.32 0.00 33.59 2.43
2008 2140 7.837863 AGTTGGTTTCGAGATCTTATGAGTTA 58.162 34.615 0.00 0.00 0.00 2.24
2023 2155 3.125316 GCCAGAACTATGAGTTGGTTTCG 59.875 47.826 0.00 0.00 38.80 3.46
2222 2361 6.843069 AGTTAAAATTTGATTGTGCACACC 57.157 33.333 21.56 15.02 0.00 4.16
2342 2484 3.446310 TGCTTGGCAATAGCATCAATG 57.554 42.857 9.72 0.00 43.30 2.82
2417 2568 7.166851 AGCAAGATTCAGAAAGAGAAGATTGA 58.833 34.615 0.00 0.00 31.36 2.57
2425 2576 5.122082 GGTCAGAAGCAAGATTCAGAAAGAG 59.878 44.000 0.63 0.00 0.00 2.85
2558 2754 5.545063 TCAGATGTTCAGTTTCACCTACA 57.455 39.130 0.00 0.00 0.00 2.74
2702 2957 7.168219 AGACAACAGTGGCATCTCTATAAAAA 58.832 34.615 0.00 0.00 33.83 1.94
2978 3234 3.191162 GCACATGTACTTGAGAATGCCAA 59.809 43.478 15.13 0.00 0.00 4.52
3135 3450 1.451504 CAGCAGTCCCAGTCAACCA 59.548 57.895 0.00 0.00 0.00 3.67
3136 3451 1.968540 GCAGCAGTCCCAGTCAACC 60.969 63.158 0.00 0.00 0.00 3.77
3137 3452 1.968540 GGCAGCAGTCCCAGTCAAC 60.969 63.158 0.00 0.00 0.00 3.18
3138 3453 2.431683 GGCAGCAGTCCCAGTCAA 59.568 61.111 0.00 0.00 0.00 3.18
3139 3454 3.640407 GGGCAGCAGTCCCAGTCA 61.640 66.667 0.00 0.00 43.37 3.41
3168 3483 2.875672 GCACCAAGAGAACTGCCACATA 60.876 50.000 0.00 0.00 0.00 2.29
3209 3524 1.067295 AGAAGTTGGTCATGAGCCCA 58.933 50.000 21.58 11.56 0.00 5.36
3304 3769 7.340122 TGAGAAACATGTTTGGTATTGTTCA 57.660 32.000 27.85 13.85 31.42 3.18
3329 3794 6.409524 AATCTCAATTGCAGTTTCCTTGAA 57.590 33.333 0.00 0.00 0.00 2.69
3391 3856 1.467734 GTTCAACAGAGATGGCAGCAG 59.532 52.381 5.19 0.00 0.00 4.24
3504 3969 2.209690 TAGTCCATGTCCACGTCTGA 57.790 50.000 0.00 0.00 0.00 3.27
3614 4079 3.860605 ACGCATATGCCGAGGCCA 61.861 61.111 21.77 0.00 41.09 5.36
3824 4289 4.100963 ACCTCAAAGGGACAAAAATGGTTC 59.899 41.667 0.00 0.00 40.58 3.62
4040 4507 2.234661 CCCTCTGCACAACTAGTCATGA 59.765 50.000 9.88 0.00 0.00 3.07
4048 4515 0.109342 CAGGTTCCCTCTGCACAACT 59.891 55.000 0.00 0.00 0.00 3.16
4109 4576 4.681483 GCCATCAAAAGTTCGAGAAAAAGG 59.319 41.667 0.00 0.00 0.00 3.11
4179 4646 7.282675 ACAAAAATGAAGATCCAGCTCTAGATG 59.717 37.037 0.00 0.00 0.00 2.90
4188 4655 8.137437 ACAAACTGTACAAAAATGAAGATCCAG 58.863 33.333 0.00 0.00 0.00 3.86
4192 4659 7.436080 CAGCACAAACTGTACAAAAATGAAGAT 59.564 33.333 0.00 0.00 32.78 2.40
4236 4705 6.415573 AGCTACAAGTATAAAAGGAACAGGG 58.584 40.000 0.00 0.00 0.00 4.45
4338 4807 9.903682 GATAGTACTACAAAACACTAGTCACAA 57.096 33.333 4.31 0.00 0.00 3.33
4339 4808 9.293404 AGATAGTACTACAAAACACTAGTCACA 57.707 33.333 4.31 0.00 0.00 3.58
4342 4811 9.991388 CAGAGATAGTACTACAAAACACTAGTC 57.009 37.037 4.31 0.00 0.00 2.59
4396 4865 3.323775 AGGGAGTACTCAAAAAGGGTCA 58.676 45.455 23.91 0.00 0.00 4.02
4397 4866 3.583526 AGAGGGAGTACTCAAAAAGGGTC 59.416 47.826 23.91 8.18 39.97 4.46
4398 4867 3.328050 CAGAGGGAGTACTCAAAAAGGGT 59.672 47.826 23.91 0.00 39.97 4.34
4400 4869 4.625607 ACAGAGGGAGTACTCAAAAAGG 57.374 45.455 23.91 10.87 39.97 3.11
4401 4870 5.611374 TGAACAGAGGGAGTACTCAAAAAG 58.389 41.667 23.91 12.64 39.97 2.27
4402 4871 5.623956 TGAACAGAGGGAGTACTCAAAAA 57.376 39.130 23.91 0.00 39.97 1.94
4403 4872 5.365605 TCTTGAACAGAGGGAGTACTCAAAA 59.634 40.000 23.91 4.28 39.97 2.44
4405 4874 4.480115 TCTTGAACAGAGGGAGTACTCAA 58.520 43.478 23.91 6.71 39.97 3.02
4406 4875 4.114015 TCTTGAACAGAGGGAGTACTCA 57.886 45.455 23.91 0.00 39.97 3.41
4407 4876 5.470047 TTTCTTGAACAGAGGGAGTACTC 57.530 43.478 14.87 14.87 37.77 2.59
4409 4878 3.997681 GCTTTCTTGAACAGAGGGAGTAC 59.002 47.826 0.00 0.00 31.12 2.73
4410 4879 3.904339 AGCTTTCTTGAACAGAGGGAGTA 59.096 43.478 0.00 0.00 31.12 2.59
4411 4880 2.708325 AGCTTTCTTGAACAGAGGGAGT 59.292 45.455 0.00 0.00 31.12 3.85
4412 4881 3.415457 AGCTTTCTTGAACAGAGGGAG 57.585 47.619 0.00 0.00 31.12 4.30
4413 4882 3.864789 AAGCTTTCTTGAACAGAGGGA 57.135 42.857 0.00 0.00 31.12 4.20
4426 4895 5.182760 ACATCCATTTGAGAGACAAGCTTTC 59.817 40.000 0.00 0.00 39.77 2.62
4428 4897 4.660168 ACATCCATTTGAGAGACAAGCTT 58.340 39.130 0.00 0.00 39.77 3.74
4429 4898 4.298103 ACATCCATTTGAGAGACAAGCT 57.702 40.909 0.00 0.00 39.77 3.74
4430 4899 6.054295 AGATACATCCATTTGAGAGACAAGC 58.946 40.000 0.00 0.00 39.77 4.01
4431 4900 7.384660 GCTAGATACATCCATTTGAGAGACAAG 59.615 40.741 0.00 0.00 39.77 3.16
4432 4901 7.147672 TGCTAGATACATCCATTTGAGAGACAA 60.148 37.037 0.00 0.00 36.65 3.18
4433 4902 6.324770 TGCTAGATACATCCATTTGAGAGACA 59.675 38.462 0.00 0.00 0.00 3.41
4434 4903 6.644592 GTGCTAGATACATCCATTTGAGAGAC 59.355 42.308 0.00 0.00 0.00 3.36
4435 4904 6.239430 GGTGCTAGATACATCCATTTGAGAGA 60.239 42.308 0.00 0.00 0.00 3.10
4436 4905 5.931146 GGTGCTAGATACATCCATTTGAGAG 59.069 44.000 0.00 0.00 0.00 3.20
4437 4906 5.366477 TGGTGCTAGATACATCCATTTGAGA 59.634 40.000 0.00 0.00 0.00 3.27
4438 4907 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
4439 4908 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
4440 4909 6.319658 ACTTTGGTGCTAGATACATCCATTTG 59.680 38.462 0.00 0.00 0.00 2.32
4441 4910 6.426587 ACTTTGGTGCTAGATACATCCATTT 58.573 36.000 0.00 0.00 0.00 2.32
4442 4911 6.006275 ACTTTGGTGCTAGATACATCCATT 57.994 37.500 0.00 0.00 0.00 3.16
4443 4912 5.636903 ACTTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
4444 4913 5.435686 AACTTTGGTGCTAGATACATCCA 57.564 39.130 0.00 0.00 0.00 3.41
4445 4914 6.480320 CACTAACTTTGGTGCTAGATACATCC 59.520 42.308 0.00 0.00 32.93 3.51
4446 4915 7.470289 CACTAACTTTGGTGCTAGATACATC 57.530 40.000 0.00 0.00 32.93 3.06
4457 4926 6.480320 GGATGTATCTAGCACTAACTTTGGTG 59.520 42.308 1.30 1.30 41.88 4.17
4458 4927 6.156256 TGGATGTATCTAGCACTAACTTTGGT 59.844 38.462 0.00 0.00 0.00 3.67
4459 4928 6.582636 TGGATGTATCTAGCACTAACTTTGG 58.417 40.000 0.00 0.00 0.00 3.28
4460 4929 8.668510 AATGGATGTATCTAGCACTAACTTTG 57.331 34.615 0.00 0.00 0.00 2.77
4461 4930 9.113838 CAAATGGATGTATCTAGCACTAACTTT 57.886 33.333 0.00 0.00 0.00 2.66
4462 4931 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
4463 4932 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
4464 4933 8.144478 TCTCAAATGGATGTATCTAGCACTAAC 58.856 37.037 0.00 0.00 0.00 2.34
4465 4934 8.250143 TCTCAAATGGATGTATCTAGCACTAA 57.750 34.615 0.00 0.00 0.00 2.24
4466 4935 7.725844 TCTCTCAAATGGATGTATCTAGCACTA 59.274 37.037 0.00 0.00 0.00 2.74
4467 4936 6.552725 TCTCTCAAATGGATGTATCTAGCACT 59.447 38.462 0.00 0.00 0.00 4.40
4468 4937 6.644592 GTCTCTCAAATGGATGTATCTAGCAC 59.355 42.308 0.00 0.00 0.00 4.40
4469 4938 6.324770 TGTCTCTCAAATGGATGTATCTAGCA 59.675 38.462 0.00 0.00 0.00 3.49
4470 4939 6.753180 TGTCTCTCAAATGGATGTATCTAGC 58.247 40.000 0.00 0.00 0.00 3.42
4471 4940 8.420222 ACTTGTCTCTCAAATGGATGTATCTAG 58.580 37.037 0.00 0.00 35.48 2.43
4472 4941 8.311395 ACTTGTCTCTCAAATGGATGTATCTA 57.689 34.615 0.00 0.00 35.48 1.98
4473 4942 7.192852 ACTTGTCTCTCAAATGGATGTATCT 57.807 36.000 0.00 0.00 35.48 1.98
4474 4943 7.856145 AACTTGTCTCTCAAATGGATGTATC 57.144 36.000 0.00 0.00 35.48 2.24
4475 4944 8.641498 AAAACTTGTCTCTCAAATGGATGTAT 57.359 30.769 0.00 0.00 35.48 2.29
4476 4945 8.463930 AAAAACTTGTCTCTCAAATGGATGTA 57.536 30.769 0.00 0.00 35.48 2.29
4477 4946 6.966534 AAAACTTGTCTCTCAAATGGATGT 57.033 33.333 0.00 0.00 35.48 3.06
4498 4967 2.029649 CGTACTCCCTCTGTCCGAAAAA 60.030 50.000 0.00 0.00 0.00 1.94
4499 4968 1.542915 CGTACTCCCTCTGTCCGAAAA 59.457 52.381 0.00 0.00 0.00 2.29
4500 4969 1.171308 CGTACTCCCTCTGTCCGAAA 58.829 55.000 0.00 0.00 0.00 3.46
4501 4970 0.325933 TCGTACTCCCTCTGTCCGAA 59.674 55.000 0.00 0.00 0.00 4.30
4502 4971 0.325933 TTCGTACTCCCTCTGTCCGA 59.674 55.000 0.00 0.00 0.00 4.55
4503 4972 1.390565 ATTCGTACTCCCTCTGTCCG 58.609 55.000 0.00 0.00 0.00 4.79
4504 4973 3.056035 ACAAATTCGTACTCCCTCTGTCC 60.056 47.826 0.00 0.00 0.00 4.02
4505 4974 4.189639 ACAAATTCGTACTCCCTCTGTC 57.810 45.455 0.00 0.00 0.00 3.51
4506 4975 4.618920 AACAAATTCGTACTCCCTCTGT 57.381 40.909 0.00 0.00 0.00 3.41
4507 4976 5.721232 ACTAACAAATTCGTACTCCCTCTG 58.279 41.667 0.00 0.00 0.00 3.35
4508 4977 5.997384 ACTAACAAATTCGTACTCCCTCT 57.003 39.130 0.00 0.00 0.00 3.69
4509 4978 8.031277 TCTTTACTAACAAATTCGTACTCCCTC 58.969 37.037 0.00 0.00 0.00 4.30
4510 4979 7.899973 TCTTTACTAACAAATTCGTACTCCCT 58.100 34.615 0.00 0.00 0.00 4.20
4511 4980 8.031277 TCTCTTTACTAACAAATTCGTACTCCC 58.969 37.037 0.00 0.00 0.00 4.30
4512 4981 8.976986 TCTCTTTACTAACAAATTCGTACTCC 57.023 34.615 0.00 0.00 0.00 3.85
4583 5052 6.611642 AGAGGGAGTATGTACAAAGCTTATCA 59.388 38.462 0.00 0.00 0.00 2.15
4589 5058 4.473477 ACAGAGGGAGTATGTACAAAGC 57.527 45.455 0.00 0.00 0.00 3.51
4614 5083 9.435802 GTGATCTAAACACTCGTATACTGTAAG 57.564 37.037 0.56 1.58 36.20 2.34
4615 5084 9.170734 AGTGATCTAAACACTCGTATACTGTAA 57.829 33.333 0.56 0.00 43.84 2.41
4616 5085 8.728337 AGTGATCTAAACACTCGTATACTGTA 57.272 34.615 0.56 0.00 43.84 2.74
4617 5086 7.627298 AGTGATCTAAACACTCGTATACTGT 57.373 36.000 0.56 0.00 43.84 3.55
4618 5087 9.999009 TTTAGTGATCTAAACACTCGTATACTG 57.001 33.333 0.00 0.00 45.58 2.74
4623 5092 9.224267 ACTACTTTAGTGATCTAAACACTCGTA 57.776 33.333 0.00 0.00 45.58 3.43
4624 5093 8.108551 ACTACTTTAGTGATCTAAACACTCGT 57.891 34.615 0.00 0.00 45.58 4.18
4625 5094 8.967552 AACTACTTTAGTGATCTAAACACTCG 57.032 34.615 0.00 0.00 45.58 4.18
4633 5102 9.186837 CCCTCTGTAAACTACTTTAGTGATCTA 57.813 37.037 0.00 0.00 39.39 1.98
4634 5103 7.894364 TCCCTCTGTAAACTACTTTAGTGATCT 59.106 37.037 0.00 0.00 39.39 2.75
4635 5104 8.064336 TCCCTCTGTAAACTACTTTAGTGATC 57.936 38.462 0.00 0.00 39.39 2.92
4636 5105 7.674772 ACTCCCTCTGTAAACTACTTTAGTGAT 59.325 37.037 0.00 0.00 39.39 3.06
4637 5106 7.008941 ACTCCCTCTGTAAACTACTTTAGTGA 58.991 38.462 0.00 0.00 39.39 3.41
4638 5107 7.229581 ACTCCCTCTGTAAACTACTTTAGTG 57.770 40.000 0.00 0.00 39.39 2.74
4647 5116 9.261035 CCATGATATATACTCCCTCTGTAAACT 57.739 37.037 0.00 0.00 0.00 2.66
4648 5117 7.982354 GCCATGATATATACTCCCTCTGTAAAC 59.018 40.741 0.00 0.00 0.00 2.01
4649 5118 7.125811 GGCCATGATATATACTCCCTCTGTAAA 59.874 40.741 0.00 0.00 0.00 2.01
4650 5119 6.611642 GGCCATGATATATACTCCCTCTGTAA 59.388 42.308 0.00 0.00 0.00 2.41
4651 5120 6.136857 GGCCATGATATATACTCCCTCTGTA 58.863 44.000 0.00 0.00 0.00 2.74
4652 5121 4.965532 GGCCATGATATATACTCCCTCTGT 59.034 45.833 0.00 0.00 0.00 3.41
4653 5122 4.964897 TGGCCATGATATATACTCCCTCTG 59.035 45.833 0.00 0.00 0.00 3.35
4654 5123 5.226504 TGGCCATGATATATACTCCCTCT 57.773 43.478 0.00 0.00 0.00 3.69
4655 5124 5.957771 TTGGCCATGATATATACTCCCTC 57.042 43.478 6.09 0.00 0.00 4.30
4656 5125 6.718593 TTTTGGCCATGATATATACTCCCT 57.281 37.500 6.09 0.00 0.00 4.20
4657 5126 7.961326 AATTTTGGCCATGATATATACTCCC 57.039 36.000 6.09 0.00 0.00 4.30
4658 5127 9.905713 TCTAATTTTGGCCATGATATATACTCC 57.094 33.333 6.09 0.00 0.00 3.85
4666 5135 9.381033 CAAACATTTCTAATTTTGGCCATGATA 57.619 29.630 6.09 0.00 0.00 2.15
4667 5136 8.102047 TCAAACATTTCTAATTTTGGCCATGAT 58.898 29.630 6.09 0.00 31.20 2.45
4668 5137 7.387397 GTCAAACATTTCTAATTTTGGCCATGA 59.613 33.333 6.09 0.00 29.17 3.07
4669 5138 7.520686 GTCAAACATTTCTAATTTTGGCCATG 58.479 34.615 6.09 0.00 29.17 3.66
4670 5139 7.671495 GTCAAACATTTCTAATTTTGGCCAT 57.329 32.000 6.09 0.00 29.17 4.40
4672 5141 6.480524 GGTCAAACATTTCTAATTTTGGCC 57.519 37.500 0.00 0.00 44.17 5.36
4673 5142 6.705825 AGTGGTCAAACATTTCTAATTTTGGC 59.294 34.615 0.00 0.00 33.68 4.52
4674 5143 9.191995 GTAGTGGTCAAACATTTCTAATTTTGG 57.808 33.333 0.00 0.00 31.20 3.28
4675 5144 9.965824 AGTAGTGGTCAAACATTTCTAATTTTG 57.034 29.630 0.00 0.00 0.00 2.44
4678 5147 8.947115 GCTAGTAGTGGTCAAACATTTCTAATT 58.053 33.333 0.00 0.00 0.00 1.40
4679 5148 8.322091 AGCTAGTAGTGGTCAAACATTTCTAAT 58.678 33.333 0.00 0.00 0.00 1.73
4680 5149 7.676947 AGCTAGTAGTGGTCAAACATTTCTAA 58.323 34.615 0.00 0.00 0.00 2.10
4681 5150 7.241042 AGCTAGTAGTGGTCAAACATTTCTA 57.759 36.000 0.00 0.00 0.00 2.10
4682 5151 6.115448 AGCTAGTAGTGGTCAAACATTTCT 57.885 37.500 0.00 0.00 0.00 2.52
4683 5152 6.535508 CCTAGCTAGTAGTGGTCAAACATTTC 59.464 42.308 19.31 0.00 0.00 2.17
4684 5153 6.013639 ACCTAGCTAGTAGTGGTCAAACATTT 60.014 38.462 19.31 0.00 0.00 2.32
4685 5154 5.484290 ACCTAGCTAGTAGTGGTCAAACATT 59.516 40.000 19.31 0.00 0.00 2.71
4686 5155 5.024118 ACCTAGCTAGTAGTGGTCAAACAT 58.976 41.667 19.31 0.00 0.00 2.71
4687 5156 4.219944 CACCTAGCTAGTAGTGGTCAAACA 59.780 45.833 19.31 0.00 0.00 2.83
4688 5157 4.745649 CACCTAGCTAGTAGTGGTCAAAC 58.254 47.826 19.31 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.