Multiple sequence alignment - TraesCS5D01G417900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G417900 chr5D 100.000 4515 0 0 1 4515 480035896 480040410 0.000000e+00 8338.0
1 TraesCS5D01G417900 chr5D 90.000 140 10 4 4016 4153 480044734 480044871 1.290000e-40 178.0
2 TraesCS5D01G417900 chr5D 75.776 161 32 7 571 728 169969701 169969857 1.740000e-09 75.0
3 TraesCS5D01G417900 chr5B 90.845 2403 137 31 727 3079 587792893 587795262 0.000000e+00 3142.0
4 TraesCS5D01G417900 chr5B 87.993 558 43 15 3688 4231 587795725 587796272 4.930000e-179 638.0
5 TraesCS5D01G417900 chr5B 87.783 442 31 7 3989 4413 587796649 587797084 3.140000e-136 496.0
6 TraesCS5D01G417900 chr5B 88.462 416 31 10 4009 4413 588883880 588883471 1.890000e-133 486.0
7 TraesCS5D01G417900 chr5B 97.048 271 7 1 3080 3350 587795298 587795567 5.320000e-124 455.0
8 TraesCS5D01G417900 chr5B 94.340 159 9 0 3379 3537 587795567 587795725 1.250000e-60 244.0
9 TraesCS5D01G417900 chr5B 94.444 108 3 3 4014 4120 587797591 587797696 3.610000e-36 163.0
10 TraesCS5D01G417900 chr5B 77.358 159 22 9 572 727 166814314 166814167 1.040000e-11 82.4
11 TraesCS5D01G417900 chr5B 87.234 47 5 1 4227 4273 415650827 415650872 8.000000e-03 52.8
12 TraesCS5D01G417900 chr5A 89.364 2360 156 34 727 3031 598525691 598528010 0.000000e+00 2880.0
13 TraesCS5D01G417900 chr5A 89.799 1147 70 19 3073 4209 598529144 598530253 0.000000e+00 1426.0
14 TraesCS5D01G417900 chr5A 83.529 255 33 5 96 342 598524778 598525031 3.510000e-56 230.0
15 TraesCS5D01G417900 chr5A 93.506 154 10 0 4260 4413 598530253 598530406 3.510000e-56 230.0
16 TraesCS5D01G417900 chr5A 96.190 105 4 0 4040 4144 598531258 598531362 6.000000e-39 172.0
17 TraesCS5D01G417900 chr5A 93.204 103 7 0 4413 4515 693655554 693655656 7.820000e-33 152.0
18 TraesCS5D01G417900 chr5A 91.753 97 6 2 4415 4510 669197041 669197136 2.830000e-27 134.0
19 TraesCS5D01G417900 chr5A 98.438 64 1 0 3022 3085 598529066 598529129 3.690000e-21 113.0
20 TraesCS5D01G417900 chr5A 89.744 78 8 0 20 97 598524606 598524683 2.870000e-17 100.0
21 TraesCS5D01G417900 chr5A 87.719 57 7 0 669 725 177598785 177598729 2.910000e-07 67.6
22 TraesCS5D01G417900 chr3B 90.423 355 30 4 4028 4381 818899924 818900275 8.850000e-127 464.0
23 TraesCS5D01G417900 chr3B 87.866 239 23 3 3647 3881 818899011 818899247 4.450000e-70 276.0
24 TraesCS5D01G417900 chr3B 87.866 239 23 3 3647 3881 818899617 818899853 4.450000e-70 276.0
25 TraesCS5D01G417900 chr3B 88.000 75 6 3 3941 4014 818899252 818899324 8.050000e-13 86.1
26 TraesCS5D01G417900 chr3B 90.323 62 4 2 3941 4001 818899858 818899918 3.740000e-11 80.5
27 TraesCS5D01G417900 chr3B 84.848 66 8 2 4302 4365 556370237 556370172 1.050000e-06 65.8
28 TraesCS5D01G417900 chr1D 75.055 906 162 48 2131 3024 298005797 298004944 3.320000e-96 363.0
29 TraesCS5D01G417900 chr1D 84.649 228 29 1 1263 1484 298006930 298006703 5.880000e-54 222.0
30 TraesCS5D01G417900 chr1D 93.750 112 6 1 4404 4515 307353868 307353758 2.790000e-37 167.0
31 TraesCS5D01G417900 chr1D 90.654 107 9 1 1780 1886 298006238 298006133 1.690000e-29 141.0
32 TraesCS5D01G417900 chr1D 89.091 55 6 0 4314 4368 460845674 460845620 8.100000e-08 69.4
33 TraesCS5D01G417900 chr1A 77.754 463 70 19 1050 1484 371082226 371081769 2.080000e-63 254.0
34 TraesCS5D01G417900 chr1A 90.000 100 10 0 1787 1886 371081293 371081194 3.670000e-26 130.0
35 TraesCS5D01G417900 chr1B 81.457 302 44 10 2131 2428 400583618 400583325 2.100000e-58 237.0
36 TraesCS5D01G417900 chr1B 84.211 228 30 3 1263 1484 400584746 400584519 2.740000e-52 217.0
37 TraesCS5D01G417900 chr1B 77.054 353 51 16 1787 2112 400584052 400583703 4.640000e-40 176.0
38 TraesCS5D01G417900 chr1B 85.981 107 15 0 4262 4368 633125600 633125494 1.030000e-21 115.0
39 TraesCS5D01G417900 chr1B 79.167 144 21 6 1050 1192 400584995 400584860 1.730000e-14 91.6
40 TraesCS5D01G417900 chr2D 99.029 103 1 0 4413 4515 643672450 643672348 7.710000e-43 185.0
41 TraesCS5D01G417900 chr7D 97.115 104 3 0 4412 4515 184501839 184501942 4.640000e-40 176.0
42 TraesCS5D01G417900 chr3A 94.495 109 6 0 4407 4515 649044160 649044052 7.770000e-38 169.0
43 TraesCS5D01G417900 chr2B 90.076 131 6 6 4017 4140 30424100 30423970 3.610000e-36 163.0
44 TraesCS5D01G417900 chr2B 88.136 59 6 1 669 727 632909693 632909636 8.100000e-08 69.4
45 TraesCS5D01G417900 chr4B 94.118 85 5 0 4431 4515 86761354 86761438 3.670000e-26 130.0
46 TraesCS5D01G417900 chr3D 97.183 71 2 0 4445 4515 567242447 567242377 2.210000e-23 121.0
47 TraesCS5D01G417900 chr3D 83.099 71 12 0 4264 4334 402783099 402783029 1.050000e-06 65.8
48 TraesCS5D01G417900 chr2A 89.831 59 6 0 669 727 677522449 677522391 4.840000e-10 76.8
49 TraesCS5D01G417900 chr6D 85.714 70 8 2 4200 4268 400698564 400698632 6.270000e-09 73.1
50 TraesCS5D01G417900 chr7B 82.022 89 11 4 642 727 431222261 431222347 2.250000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G417900 chr5D 480035896 480040410 4514 False 8338.000000 8338 100.000000 1 4515 1 chr5D.!!$F2 4514
1 TraesCS5D01G417900 chr5B 587792893 587797696 4803 False 856.333333 3142 92.075500 727 4413 6 chr5B.!!$F2 3686
2 TraesCS5D01G417900 chr5A 598524606 598531362 6756 False 735.857143 2880 91.510000 20 4413 7 chr5A.!!$F3 4393
3 TraesCS5D01G417900 chr3B 818899011 818900275 1264 False 236.520000 464 88.895600 3647 4381 5 chr3B.!!$F1 734
4 TraesCS5D01G417900 chr1D 298004944 298006930 1986 True 242.000000 363 83.452667 1263 3024 3 chr1D.!!$R3 1761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 394 0.029681 ATGGACAGCAGATAGGGGGT 60.030 55.0 0.00 0.00 0.00 4.95 F
507 611 0.102481 TCTCGTAAGCGGCCTTCATC 59.898 55.0 0.00 0.00 38.89 2.92 F
1916 2906 0.039256 TTTTCTCGTTGCTGCATGCC 60.039 50.0 16.68 0.28 42.00 4.40 F
2526 3632 0.539986 TACGATGCCTTGGACCTTCC 59.460 55.0 0.00 0.00 36.96 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1416 2166 1.002430 TCGAGCTTGTTCATGAGGCTT 59.998 47.619 13.09 0.0 33.13 4.35 R
2406 3511 0.250338 AAGAAAGACCTGACGGTGCC 60.250 55.000 0.00 0.0 45.73 5.01 R
3460 5683 0.179073 CACAAGGATAGGGGCAGTCG 60.179 60.000 0.00 0.0 0.00 4.18 R
3706 5930 0.322975 AGACAGTCTGCACCCATCAC 59.677 55.000 0.91 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.351131 AAAAACTGTCTGAACAACCGTC 57.649 40.909 0.00 0.00 34.24 4.79
22 23 2.981859 AACTGTCTGAACAACCGTCT 57.018 45.000 0.00 0.00 34.24 4.18
23 24 4.395959 AAACTGTCTGAACAACCGTCTA 57.604 40.909 0.00 0.00 34.24 2.59
28 29 5.068198 ACTGTCTGAACAACCGTCTAAACTA 59.932 40.000 0.00 0.00 34.24 2.24
37 38 4.445452 ACCGTCTAAACTATCGCAAAGA 57.555 40.909 0.00 0.00 0.00 2.52
38 39 4.421948 ACCGTCTAAACTATCGCAAAGAG 58.578 43.478 0.00 0.00 0.00 2.85
42 43 5.555256 CGTCTAAACTATCGCAAAGAGCATG 60.555 44.000 0.00 0.00 46.13 4.06
63 64 0.531200 ACGGTCGATTTGAGGGTCTC 59.469 55.000 0.00 0.00 0.00 3.36
64 65 0.179108 CGGTCGATTTGAGGGTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
68 69 0.525668 CGATTTGAGGGTCTCCGTCG 60.526 60.000 4.45 0.00 40.83 5.12
119 216 9.144747 CATATATGTTATCTCCACTGTAGTTGC 57.855 37.037 4.43 0.00 0.00 4.17
144 241 8.542953 GCATTTAGCAAAACTTATTTATCCAGC 58.457 33.333 0.00 0.00 44.79 4.85
178 277 4.230657 GCAAAATTAATGTACGTGTGCCA 58.769 39.130 0.00 0.00 0.00 4.92
179 278 4.323336 GCAAAATTAATGTACGTGTGCCAG 59.677 41.667 0.00 0.00 0.00 4.85
180 279 5.457140 CAAAATTAATGTACGTGTGCCAGT 58.543 37.500 0.00 0.00 0.00 4.00
193 292 1.080298 TGCCAGTTTATAACACGCGG 58.920 50.000 12.47 1.27 32.33 6.46
195 294 1.729284 CCAGTTTATAACACGCGGGT 58.271 50.000 9.01 9.01 0.00 5.28
197 296 3.260740 CCAGTTTATAACACGCGGGTAA 58.739 45.455 17.66 1.58 0.00 2.85
202 301 7.067116 CAGTTTATAACACGCGGGTAATTATG 58.933 38.462 17.66 4.42 0.00 1.90
236 335 3.317711 TCTCCAACGTTGTGCATCAAAAT 59.682 39.130 25.63 0.00 37.81 1.82
249 348 5.608449 TGCATCAAAATGGACACATCAAAA 58.392 33.333 0.00 0.00 35.94 2.44
274 378 2.881441 CGTTCGGACGTATCCATGG 58.119 57.895 8.45 4.97 46.67 3.66
279 383 0.597637 CGGACGTATCCATGGACAGC 60.598 60.000 18.99 9.23 46.67 4.40
289 393 0.399454 CATGGACAGCAGATAGGGGG 59.601 60.000 0.00 0.00 0.00 5.40
290 394 0.029681 ATGGACAGCAGATAGGGGGT 60.030 55.000 0.00 0.00 0.00 4.95
321 425 0.673437 CCGGTGCTCCAAATGTTTGT 59.327 50.000 5.52 0.00 36.45 2.83
324 428 1.686052 GGTGCTCCAAATGTTTGTCCA 59.314 47.619 0.00 0.00 36.45 4.02
325 429 2.299867 GGTGCTCCAAATGTTTGTCCAT 59.700 45.455 0.00 0.00 36.45 3.41
329 433 5.050159 GTGCTCCAAATGTTTGTCCATTTTC 60.050 40.000 4.92 0.00 41.79 2.29
330 434 5.055812 GCTCCAAATGTTTGTCCATTTTCA 58.944 37.500 4.92 0.00 41.79 2.69
331 435 5.526846 GCTCCAAATGTTTGTCCATTTTCAA 59.473 36.000 4.92 0.00 41.79 2.69
332 436 6.038050 GCTCCAAATGTTTGTCCATTTTCAAA 59.962 34.615 4.92 0.00 41.79 2.69
335 439 8.457261 TCCAAATGTTTGTCCATTTTCAAAAAG 58.543 29.630 4.92 0.00 41.79 2.27
337 441 9.837525 CAAATGTTTGTCCATTTTCAAAAAGAA 57.162 25.926 0.00 0.00 41.79 2.52
340 444 8.839310 TGTTTGTCCATTTTCAAAAAGAAAGA 57.161 26.923 0.00 0.00 46.24 2.52
341 445 9.277783 TGTTTGTCCATTTTCAAAAAGAAAGAA 57.722 25.926 0.00 0.00 46.24 2.52
342 446 9.759259 GTTTGTCCATTTTCAAAAAGAAAGAAG 57.241 29.630 0.00 0.00 46.24 2.85
343 447 9.717942 TTTGTCCATTTTCAAAAAGAAAGAAGA 57.282 25.926 0.00 0.00 46.24 2.87
344 448 9.717942 TTGTCCATTTTCAAAAAGAAAGAAGAA 57.282 25.926 0.00 0.00 46.24 2.52
345 449 9.889128 TGTCCATTTTCAAAAAGAAAGAAGAAT 57.111 25.926 0.00 0.00 46.24 2.40
364 468 9.574516 AGAAGAATAACAGTAAACCAAATGTCT 57.425 29.630 0.00 0.00 0.00 3.41
367 471 9.227777 AGAATAACAGTAAACCAAATGTCTACC 57.772 33.333 0.00 0.00 0.00 3.18
368 472 8.927675 AATAACAGTAAACCAAATGTCTACCA 57.072 30.769 0.00 0.00 0.00 3.25
369 473 9.528489 AATAACAGTAAACCAAATGTCTACCAT 57.472 29.630 0.00 0.00 34.36 3.55
370 474 6.817765 ACAGTAAACCAAATGTCTACCATG 57.182 37.500 0.00 0.00 32.82 3.66
371 475 5.183140 ACAGTAAACCAAATGTCTACCATGC 59.817 40.000 0.00 0.00 32.82 4.06
372 476 3.848272 AAACCAAATGTCTACCATGCG 57.152 42.857 0.00 0.00 32.82 4.73
373 477 1.750193 ACCAAATGTCTACCATGCGG 58.250 50.000 0.00 0.00 32.82 5.69
374 478 0.381801 CCAAATGTCTACCATGCGGC 59.618 55.000 0.00 0.00 32.82 6.53
375 479 0.381801 CAAATGTCTACCATGCGGCC 59.618 55.000 0.00 0.00 32.82 6.13
376 480 0.255890 AAATGTCTACCATGCGGCCT 59.744 50.000 0.00 0.00 32.82 5.19
377 481 0.179045 AATGTCTACCATGCGGCCTC 60.179 55.000 0.00 0.00 32.82 4.70
378 482 1.337384 ATGTCTACCATGCGGCCTCA 61.337 55.000 0.00 0.00 34.57 3.86
379 483 1.521681 GTCTACCATGCGGCCTCAC 60.522 63.158 0.00 0.00 34.57 3.51
380 484 1.685765 TCTACCATGCGGCCTCACT 60.686 57.895 0.00 0.00 34.57 3.41
381 485 1.221840 CTACCATGCGGCCTCACTT 59.778 57.895 0.00 0.00 34.57 3.16
382 486 0.392998 CTACCATGCGGCCTCACTTT 60.393 55.000 0.00 0.00 34.57 2.66
383 487 0.676466 TACCATGCGGCCTCACTTTG 60.676 55.000 0.00 0.00 34.57 2.77
384 488 1.675310 CCATGCGGCCTCACTTTGA 60.675 57.895 0.00 0.00 0.00 2.69
385 489 1.243342 CCATGCGGCCTCACTTTGAA 61.243 55.000 0.00 0.00 0.00 2.69
386 490 0.813184 CATGCGGCCTCACTTTGAAT 59.187 50.000 0.00 0.00 0.00 2.57
387 491 1.098050 ATGCGGCCTCACTTTGAATC 58.902 50.000 0.00 0.00 0.00 2.52
388 492 0.250684 TGCGGCCTCACTTTGAATCA 60.251 50.000 0.00 0.00 0.00 2.57
389 493 1.098050 GCGGCCTCACTTTGAATCAT 58.902 50.000 0.00 0.00 0.00 2.45
390 494 1.064654 GCGGCCTCACTTTGAATCATC 59.935 52.381 0.00 0.00 0.00 2.92
391 495 1.328680 CGGCCTCACTTTGAATCATCG 59.671 52.381 0.00 0.00 0.00 3.84
392 496 2.632377 GGCCTCACTTTGAATCATCGA 58.368 47.619 0.00 0.00 0.00 3.59
393 497 3.209410 GGCCTCACTTTGAATCATCGAT 58.791 45.455 0.00 0.00 0.00 3.59
394 498 3.249559 GGCCTCACTTTGAATCATCGATC 59.750 47.826 0.00 0.00 0.00 3.69
395 499 3.060003 GCCTCACTTTGAATCATCGATCG 60.060 47.826 9.36 9.36 0.00 3.69
396 500 4.363138 CCTCACTTTGAATCATCGATCGA 58.637 43.478 21.86 21.86 0.00 3.59
397 501 4.987285 CCTCACTTTGAATCATCGATCGAT 59.013 41.667 24.60 24.60 34.81 3.59
398 502 6.152379 CCTCACTTTGAATCATCGATCGATA 58.848 40.000 28.94 17.64 32.93 2.92
399 503 6.088749 CCTCACTTTGAATCATCGATCGATAC 59.911 42.308 28.94 19.52 32.93 2.24
400 504 5.920840 TCACTTTGAATCATCGATCGATACC 59.079 40.000 28.94 17.70 32.93 2.73
401 505 5.691754 CACTTTGAATCATCGATCGATACCA 59.308 40.000 28.94 19.75 32.93 3.25
402 506 6.200854 CACTTTGAATCATCGATCGATACCAA 59.799 38.462 28.94 23.43 32.93 3.67
403 507 6.931281 ACTTTGAATCATCGATCGATACCAAT 59.069 34.615 28.94 16.90 32.93 3.16
404 508 7.442364 ACTTTGAATCATCGATCGATACCAATT 59.558 33.333 28.94 22.86 32.93 2.32
405 509 6.951256 TGAATCATCGATCGATACCAATTC 57.049 37.500 28.94 27.79 32.93 2.17
406 510 6.454795 TGAATCATCGATCGATACCAATTCA 58.545 36.000 29.68 29.68 32.54 2.57
407 511 6.928492 TGAATCATCGATCGATACCAATTCAA 59.072 34.615 30.38 22.08 32.33 2.69
408 512 6.712241 ATCATCGATCGATACCAATTCAAC 57.288 37.500 28.94 0.00 32.93 3.18
409 513 5.842907 TCATCGATCGATACCAATTCAACT 58.157 37.500 28.94 1.50 32.93 3.16
410 514 6.977213 TCATCGATCGATACCAATTCAACTA 58.023 36.000 28.94 0.00 32.93 2.24
411 515 7.602753 TCATCGATCGATACCAATTCAACTAT 58.397 34.615 28.94 0.31 32.93 2.12
412 516 7.542130 TCATCGATCGATACCAATTCAACTATG 59.458 37.037 28.94 13.22 32.93 2.23
413 517 5.633601 TCGATCGATACCAATTCAACTATGC 59.366 40.000 15.15 0.00 0.00 3.14
414 518 5.405269 CGATCGATACCAATTCAACTATGCA 59.595 40.000 10.26 0.00 0.00 3.96
415 519 6.091305 CGATCGATACCAATTCAACTATGCAT 59.909 38.462 10.26 3.79 0.00 3.96
416 520 7.360353 CGATCGATACCAATTCAACTATGCATT 60.360 37.037 10.26 0.00 0.00 3.56
417 521 7.566760 TCGATACCAATTCAACTATGCATTT 57.433 32.000 3.54 0.00 0.00 2.32
418 522 8.669946 TCGATACCAATTCAACTATGCATTTA 57.330 30.769 3.54 0.00 0.00 1.40
419 523 9.114952 TCGATACCAATTCAACTATGCATTTAA 57.885 29.630 3.54 0.00 0.00 1.52
420 524 9.729023 CGATACCAATTCAACTATGCATTTAAA 57.271 29.630 3.54 0.00 0.00 1.52
447 551 8.920509 ACTAATAAAAATGCCGGATGTTTAAC 57.079 30.769 5.05 0.00 29.18 2.01
448 552 8.524487 ACTAATAAAAATGCCGGATGTTTAACA 58.476 29.630 5.05 0.00 29.18 2.41
449 553 9.360093 CTAATAAAAATGCCGGATGTTTAACAA 57.640 29.630 5.05 0.00 29.18 2.83
450 554 7.826260 ATAAAAATGCCGGATGTTTAACAAG 57.174 32.000 5.05 0.00 29.18 3.16
451 555 4.864704 AAATGCCGGATGTTTAACAAGT 57.135 36.364 5.05 0.00 0.00 3.16
452 556 4.864704 AATGCCGGATGTTTAACAAGTT 57.135 36.364 5.05 0.00 0.00 2.66
453 557 4.864704 ATGCCGGATGTTTAACAAGTTT 57.135 36.364 5.05 0.00 0.00 2.66
454 558 4.657436 TGCCGGATGTTTAACAAGTTTT 57.343 36.364 5.05 0.00 0.00 2.43
455 559 5.012328 TGCCGGATGTTTAACAAGTTTTT 57.988 34.783 5.05 0.00 0.00 1.94
456 560 6.145338 TGCCGGATGTTTAACAAGTTTTTA 57.855 33.333 5.05 0.00 0.00 1.52
457 561 6.570692 TGCCGGATGTTTAACAAGTTTTTAA 58.429 32.000 5.05 0.00 0.00 1.52
458 562 7.039882 TGCCGGATGTTTAACAAGTTTTTAAA 58.960 30.769 5.05 3.38 0.00 1.52
459 563 7.548075 TGCCGGATGTTTAACAAGTTTTTAAAA 59.452 29.630 5.05 0.00 31.78 1.52
460 564 8.552865 GCCGGATGTTTAACAAGTTTTTAAAAT 58.447 29.630 5.05 5.54 31.78 1.82
471 575 8.846943 ACAAGTTTTTAAAATCCATCAATCCC 57.153 30.769 0.55 0.00 0.00 3.85
472 576 8.435982 ACAAGTTTTTAAAATCCATCAATCCCA 58.564 29.630 0.55 0.00 0.00 4.37
473 577 9.282569 CAAGTTTTTAAAATCCATCAATCCCAA 57.717 29.630 0.55 0.00 0.00 4.12
474 578 9.859152 AAGTTTTTAAAATCCATCAATCCCAAA 57.141 25.926 0.55 0.00 0.00 3.28
483 587 8.795899 AATCCATCAATCCCAAATATAAACCA 57.204 30.769 0.00 0.00 0.00 3.67
484 588 8.977559 ATCCATCAATCCCAAATATAAACCAT 57.022 30.769 0.00 0.00 0.00 3.55
486 590 9.308000 TCCATCAATCCCAAATATAAACCATAC 57.692 33.333 0.00 0.00 0.00 2.39
487 591 8.531146 CCATCAATCCCAAATATAAACCATACC 58.469 37.037 0.00 0.00 0.00 2.73
488 592 9.312904 CATCAATCCCAAATATAAACCATACCT 57.687 33.333 0.00 0.00 0.00 3.08
489 593 8.934023 TCAATCCCAAATATAAACCATACCTC 57.066 34.615 0.00 0.00 0.00 3.85
490 594 8.732854 TCAATCCCAAATATAAACCATACCTCT 58.267 33.333 0.00 0.00 0.00 3.69
491 595 9.014297 CAATCCCAAATATAAACCATACCTCTC 57.986 37.037 0.00 0.00 0.00 3.20
492 596 6.765403 TCCCAAATATAAACCATACCTCTCG 58.235 40.000 0.00 0.00 0.00 4.04
493 597 6.328148 TCCCAAATATAAACCATACCTCTCGT 59.672 38.462 0.00 0.00 0.00 4.18
494 598 7.510001 TCCCAAATATAAACCATACCTCTCGTA 59.490 37.037 0.00 0.00 0.00 3.43
495 599 8.152246 CCCAAATATAAACCATACCTCTCGTAA 58.848 37.037 0.00 0.00 0.00 3.18
496 600 9.204570 CCAAATATAAACCATACCTCTCGTAAG 57.795 37.037 0.00 0.00 0.00 2.34
497 601 8.709646 CAAATATAAACCATACCTCTCGTAAGC 58.290 37.037 0.00 0.00 37.18 3.09
498 602 2.865343 AACCATACCTCTCGTAAGCG 57.135 50.000 0.00 0.00 39.92 4.68
499 603 1.030457 ACCATACCTCTCGTAAGCGG 58.970 55.000 0.00 0.00 38.89 5.52
500 604 0.318784 CCATACCTCTCGTAAGCGGC 60.319 60.000 0.00 0.00 38.89 6.53
501 605 0.318784 CATACCTCTCGTAAGCGGCC 60.319 60.000 0.00 0.00 38.89 6.13
502 606 0.467659 ATACCTCTCGTAAGCGGCCT 60.468 55.000 0.00 0.00 38.89 5.19
503 607 0.682209 TACCTCTCGTAAGCGGCCTT 60.682 55.000 0.00 0.00 38.89 4.35
504 608 1.227002 CCTCTCGTAAGCGGCCTTC 60.227 63.158 0.00 0.00 38.89 3.46
505 609 1.511305 CTCTCGTAAGCGGCCTTCA 59.489 57.895 0.00 0.00 38.89 3.02
506 610 0.103208 CTCTCGTAAGCGGCCTTCAT 59.897 55.000 0.00 0.00 38.89 2.57
507 611 0.102481 TCTCGTAAGCGGCCTTCATC 59.898 55.000 0.00 0.00 38.89 2.92
508 612 0.103208 CTCGTAAGCGGCCTTCATCT 59.897 55.000 0.00 0.00 38.89 2.90
509 613 0.102481 TCGTAAGCGGCCTTCATCTC 59.898 55.000 0.00 0.00 38.89 2.75
510 614 0.179111 CGTAAGCGGCCTTCATCTCA 60.179 55.000 0.00 0.00 32.47 3.27
511 615 1.539065 CGTAAGCGGCCTTCATCTCAT 60.539 52.381 0.00 0.00 32.47 2.90
512 616 2.288213 CGTAAGCGGCCTTCATCTCATA 60.288 50.000 0.00 0.00 32.47 2.15
513 617 2.246719 AAGCGGCCTTCATCTCATAC 57.753 50.000 0.00 0.00 0.00 2.39
514 618 1.418334 AGCGGCCTTCATCTCATACT 58.582 50.000 0.00 0.00 0.00 2.12
515 619 1.765314 AGCGGCCTTCATCTCATACTT 59.235 47.619 0.00 0.00 0.00 2.24
516 620 2.139118 GCGGCCTTCATCTCATACTTC 58.861 52.381 0.00 0.00 0.00 3.01
517 621 2.224161 GCGGCCTTCATCTCATACTTCT 60.224 50.000 0.00 0.00 0.00 2.85
518 622 3.648009 CGGCCTTCATCTCATACTTCTC 58.352 50.000 0.00 0.00 0.00 2.87
519 623 3.320541 CGGCCTTCATCTCATACTTCTCT 59.679 47.826 0.00 0.00 0.00 3.10
520 624 4.558496 CGGCCTTCATCTCATACTTCTCTC 60.558 50.000 0.00 0.00 0.00 3.20
521 625 4.262420 GGCCTTCATCTCATACTTCTCTCC 60.262 50.000 0.00 0.00 0.00 3.71
522 626 4.588528 GCCTTCATCTCATACTTCTCTCCT 59.411 45.833 0.00 0.00 0.00 3.69
523 627 5.278957 GCCTTCATCTCATACTTCTCTCCTC 60.279 48.000 0.00 0.00 0.00 3.71
524 628 5.048782 CCTTCATCTCATACTTCTCTCCTCG 60.049 48.000 0.00 0.00 0.00 4.63
525 629 5.297569 TCATCTCATACTTCTCTCCTCGA 57.702 43.478 0.00 0.00 0.00 4.04
526 630 5.685728 TCATCTCATACTTCTCTCCTCGAA 58.314 41.667 0.00 0.00 0.00 3.71
527 631 5.529430 TCATCTCATACTTCTCTCCTCGAAC 59.471 44.000 0.00 0.00 0.00 3.95
528 632 5.105567 TCTCATACTTCTCTCCTCGAACT 57.894 43.478 0.00 0.00 0.00 3.01
529 633 5.502079 TCTCATACTTCTCTCCTCGAACTT 58.498 41.667 0.00 0.00 0.00 2.66
530 634 5.355630 TCTCATACTTCTCTCCTCGAACTTG 59.644 44.000 0.00 0.00 0.00 3.16
531 635 5.254115 TCATACTTCTCTCCTCGAACTTGA 58.746 41.667 0.00 0.00 0.00 3.02
532 636 5.710567 TCATACTTCTCTCCTCGAACTTGAA 59.289 40.000 0.00 0.00 0.00 2.69
533 637 4.939052 ACTTCTCTCCTCGAACTTGAAA 57.061 40.909 0.00 0.00 0.00 2.69
534 638 5.476091 ACTTCTCTCCTCGAACTTGAAAT 57.524 39.130 0.00 0.00 0.00 2.17
535 639 5.859495 ACTTCTCTCCTCGAACTTGAAATT 58.141 37.500 0.00 0.00 0.00 1.82
536 640 6.292150 ACTTCTCTCCTCGAACTTGAAATTT 58.708 36.000 0.00 0.00 0.00 1.82
537 641 6.768381 ACTTCTCTCCTCGAACTTGAAATTTT 59.232 34.615 0.00 0.00 0.00 1.82
538 642 7.283354 ACTTCTCTCCTCGAACTTGAAATTTTT 59.717 33.333 0.00 0.00 0.00 1.94
539 643 7.190920 TCTCTCCTCGAACTTGAAATTTTTC 57.809 36.000 0.00 0.00 37.69 2.29
540 644 6.765989 TCTCTCCTCGAACTTGAAATTTTTCA 59.234 34.615 1.66 1.66 44.78 2.69
541 645 7.445402 TCTCTCCTCGAACTTGAAATTTTTCAT 59.555 33.333 6.57 0.00 45.65 2.57
542 646 7.584987 TCTCCTCGAACTTGAAATTTTTCATC 58.415 34.615 6.57 1.76 45.65 2.92
543 647 6.370593 TCCTCGAACTTGAAATTTTTCATCG 58.629 36.000 15.96 15.96 45.65 3.84
544 648 5.059710 CCTCGAACTTGAAATTTTTCATCGC 59.940 40.000 16.75 4.98 45.65 4.58
545 649 4.915085 TCGAACTTGAAATTTTTCATCGCC 59.085 37.500 16.75 5.09 45.65 5.54
546 650 4.679197 CGAACTTGAAATTTTTCATCGCCA 59.321 37.500 12.05 0.00 45.65 5.69
547 651 5.387342 CGAACTTGAAATTTTTCATCGCCAC 60.387 40.000 12.05 2.25 45.65 5.01
548 652 4.942852 ACTTGAAATTTTTCATCGCCACA 58.057 34.783 6.57 0.00 45.65 4.17
549 653 5.540911 ACTTGAAATTTTTCATCGCCACAT 58.459 33.333 6.57 0.00 45.65 3.21
550 654 5.406175 ACTTGAAATTTTTCATCGCCACATG 59.594 36.000 6.57 0.00 45.65 3.21
551 655 4.880759 TGAAATTTTTCATCGCCACATGT 58.119 34.783 1.66 0.00 41.88 3.21
552 656 5.295950 TGAAATTTTTCATCGCCACATGTT 58.704 33.333 0.00 0.00 41.88 2.71
553 657 5.177142 TGAAATTTTTCATCGCCACATGTTG 59.823 36.000 0.00 0.00 41.88 3.33
554 658 3.724508 TTTTTCATCGCCACATGTTGT 57.275 38.095 0.00 0.00 0.00 3.32
555 659 3.724508 TTTTCATCGCCACATGTTGTT 57.275 38.095 0.00 0.00 0.00 2.83
556 660 2.987413 TTCATCGCCACATGTTGTTC 57.013 45.000 0.00 0.00 0.00 3.18
557 661 1.889545 TCATCGCCACATGTTGTTCA 58.110 45.000 0.00 0.00 0.00 3.18
558 662 1.535028 TCATCGCCACATGTTGTTCAC 59.465 47.619 0.00 0.00 0.00 3.18
559 663 0.881118 ATCGCCACATGTTGTTCACC 59.119 50.000 0.00 0.00 0.00 4.02
560 664 1.169661 TCGCCACATGTTGTTCACCC 61.170 55.000 0.00 0.00 0.00 4.61
561 665 1.451337 CGCCACATGTTGTTCACCCA 61.451 55.000 0.00 0.00 0.00 4.51
562 666 0.314935 GCCACATGTTGTTCACCCAG 59.685 55.000 0.00 0.00 0.00 4.45
563 667 1.979855 CCACATGTTGTTCACCCAGA 58.020 50.000 0.00 0.00 0.00 3.86
564 668 2.517959 CCACATGTTGTTCACCCAGAT 58.482 47.619 0.00 0.00 0.00 2.90
565 669 2.229543 CCACATGTTGTTCACCCAGATG 59.770 50.000 0.00 0.00 0.00 2.90
566 670 2.229543 CACATGTTGTTCACCCAGATGG 59.770 50.000 0.00 0.00 41.37 3.51
586 690 4.423231 CCCCCTTTGAGCTTCACC 57.577 61.111 0.00 0.00 0.00 4.02
587 691 1.304464 CCCCCTTTGAGCTTCACCC 60.304 63.158 0.00 0.00 0.00 4.61
588 692 1.460255 CCCCTTTGAGCTTCACCCA 59.540 57.895 0.00 0.00 0.00 4.51
589 693 0.178964 CCCCTTTGAGCTTCACCCAA 60.179 55.000 0.00 0.00 0.00 4.12
590 694 0.961753 CCCTTTGAGCTTCACCCAAC 59.038 55.000 0.00 0.00 0.00 3.77
591 695 1.691196 CCTTTGAGCTTCACCCAACA 58.309 50.000 0.00 0.00 0.00 3.33
592 696 2.031120 CCTTTGAGCTTCACCCAACAA 58.969 47.619 0.00 0.00 0.00 2.83
593 697 2.629617 CCTTTGAGCTTCACCCAACAAT 59.370 45.455 0.00 0.00 0.00 2.71
594 698 3.553508 CCTTTGAGCTTCACCCAACAATG 60.554 47.826 0.00 0.00 0.00 2.82
595 699 2.363306 TGAGCTTCACCCAACAATGT 57.637 45.000 0.00 0.00 0.00 2.71
596 700 1.955778 TGAGCTTCACCCAACAATGTG 59.044 47.619 0.00 0.00 0.00 3.21
597 701 1.956477 GAGCTTCACCCAACAATGTGT 59.044 47.619 0.00 0.00 34.14 3.72
598 702 1.956477 AGCTTCACCCAACAATGTGTC 59.044 47.619 0.00 0.00 34.14 3.67
599 703 1.680735 GCTTCACCCAACAATGTGTCA 59.319 47.619 0.00 0.00 34.14 3.58
600 704 2.100584 GCTTCACCCAACAATGTGTCAA 59.899 45.455 0.00 0.00 34.14 3.18
601 705 3.705604 CTTCACCCAACAATGTGTCAAC 58.294 45.455 0.00 0.00 34.14 3.18
602 706 1.673400 TCACCCAACAATGTGTCAACG 59.327 47.619 0.00 0.00 34.14 4.10
603 707 1.403679 CACCCAACAATGTGTCAACGT 59.596 47.619 0.00 0.00 0.00 3.99
604 708 1.403679 ACCCAACAATGTGTCAACGTG 59.596 47.619 0.00 0.00 0.00 4.49
605 709 1.673400 CCCAACAATGTGTCAACGTGA 59.327 47.619 0.00 0.00 0.00 4.35
606 710 2.098280 CCCAACAATGTGTCAACGTGAA 59.902 45.455 0.00 0.00 0.00 3.18
607 711 3.362295 CCAACAATGTGTCAACGTGAAG 58.638 45.455 0.00 0.00 0.00 3.02
608 712 3.362295 CAACAATGTGTCAACGTGAAGG 58.638 45.455 0.00 0.00 0.00 3.46
609 713 1.946768 ACAATGTGTCAACGTGAAGGG 59.053 47.619 0.00 0.00 0.00 3.95
610 714 0.951558 AATGTGTCAACGTGAAGGGC 59.048 50.000 0.00 0.00 0.00 5.19
611 715 0.108585 ATGTGTCAACGTGAAGGGCT 59.891 50.000 0.00 0.00 0.00 5.19
612 716 0.107410 TGTGTCAACGTGAAGGGCTT 60.107 50.000 0.00 0.00 0.00 4.35
613 717 0.307760 GTGTCAACGTGAAGGGCTTG 59.692 55.000 0.00 0.00 0.00 4.01
614 718 1.282875 GTCAACGTGAAGGGCTTGC 59.717 57.895 0.00 0.00 0.00 4.01
615 719 1.896660 TCAACGTGAAGGGCTTGCC 60.897 57.895 2.49 2.49 0.00 4.52
616 720 2.597510 AACGTGAAGGGCTTGCCC 60.598 61.111 22.29 22.29 0.00 5.36
617 721 3.133365 AACGTGAAGGGCTTGCCCT 62.133 57.895 26.23 26.23 42.86 5.19
618 722 2.747855 CGTGAAGGGCTTGCCCTC 60.748 66.667 30.81 23.04 39.63 4.30
619 723 2.361737 GTGAAGGGCTTGCCCTCC 60.362 66.667 30.81 21.33 39.63 4.30
620 724 4.033776 TGAAGGGCTTGCCCTCCG 62.034 66.667 30.81 0.00 39.63 4.63
621 725 4.035102 GAAGGGCTTGCCCTCCGT 62.035 66.667 30.81 17.48 39.63 4.69
622 726 3.978571 GAAGGGCTTGCCCTCCGTC 62.979 68.421 30.81 21.41 39.63 4.79
625 729 4.035102 GGCTTGCCCTCCGTCCTT 62.035 66.667 0.00 0.00 0.00 3.36
626 730 2.034221 GCTTGCCCTCCGTCCTTT 59.966 61.111 0.00 0.00 0.00 3.11
627 731 2.335712 GCTTGCCCTCCGTCCTTTG 61.336 63.158 0.00 0.00 0.00 2.77
628 732 1.374947 CTTGCCCTCCGTCCTTTGA 59.625 57.895 0.00 0.00 0.00 2.69
629 733 0.955919 CTTGCCCTCCGTCCTTTGAC 60.956 60.000 0.00 0.00 38.18 3.18
630 734 1.701031 TTGCCCTCCGTCCTTTGACA 61.701 55.000 0.00 0.00 41.85 3.58
631 735 1.376037 GCCCTCCGTCCTTTGACAG 60.376 63.158 0.00 0.00 41.85 3.51
632 736 1.376037 CCCTCCGTCCTTTGACAGC 60.376 63.158 0.00 0.00 41.85 4.40
633 737 1.738099 CCTCCGTCCTTTGACAGCG 60.738 63.158 0.00 0.00 41.85 5.18
634 738 2.357034 TCCGTCCTTTGACAGCGC 60.357 61.111 0.00 0.00 41.85 5.92
635 739 3.777925 CCGTCCTTTGACAGCGCG 61.778 66.667 0.00 0.00 41.85 6.86
636 740 3.036084 CGTCCTTTGACAGCGCGT 61.036 61.111 8.43 2.53 41.85 6.01
637 741 2.551270 GTCCTTTGACAGCGCGTG 59.449 61.111 8.43 7.60 41.37 5.34
638 742 1.954146 GTCCTTTGACAGCGCGTGA 60.954 57.895 8.43 0.00 41.37 4.35
639 743 1.664649 TCCTTTGACAGCGCGTGAG 60.665 57.895 8.43 0.00 0.00 3.51
640 744 2.671177 CCTTTGACAGCGCGTGAGG 61.671 63.158 8.43 9.63 0.00 3.86
650 754 3.588277 CGCGTGAGGGCTATACAAT 57.412 52.632 0.00 0.00 37.19 2.71
651 755 1.139989 CGCGTGAGGGCTATACAATG 58.860 55.000 0.00 0.00 37.19 2.82
652 756 1.269569 CGCGTGAGGGCTATACAATGA 60.270 52.381 0.00 0.00 37.19 2.57
653 757 2.610479 CGCGTGAGGGCTATACAATGAT 60.610 50.000 0.00 0.00 37.19 2.45
654 758 2.738846 GCGTGAGGGCTATACAATGATG 59.261 50.000 0.00 0.00 0.00 3.07
655 759 2.738846 CGTGAGGGCTATACAATGATGC 59.261 50.000 0.00 0.00 0.00 3.91
656 760 2.738846 GTGAGGGCTATACAATGATGCG 59.261 50.000 0.00 0.00 0.00 4.73
657 761 2.632512 TGAGGGCTATACAATGATGCGA 59.367 45.455 0.00 0.00 0.00 5.10
658 762 3.070878 TGAGGGCTATACAATGATGCGAA 59.929 43.478 0.00 0.00 0.00 4.70
659 763 3.403038 AGGGCTATACAATGATGCGAAC 58.597 45.455 0.00 0.00 0.00 3.95
660 764 3.138304 GGGCTATACAATGATGCGAACA 58.862 45.455 0.00 0.00 0.00 3.18
661 765 3.753272 GGGCTATACAATGATGCGAACAT 59.247 43.478 0.00 0.00 39.98 2.71
672 776 3.581024 ATGCGAACATCAAGTTGCAAT 57.419 38.095 0.59 0.00 42.83 3.56
673 777 4.700268 ATGCGAACATCAAGTTGCAATA 57.300 36.364 0.59 0.00 42.83 1.90
674 778 4.700268 TGCGAACATCAAGTTGCAATAT 57.300 36.364 0.59 0.00 41.51 1.28
675 779 5.058149 TGCGAACATCAAGTTGCAATATT 57.942 34.783 0.59 0.00 41.51 1.28
676 780 6.188400 TGCGAACATCAAGTTGCAATATTA 57.812 33.333 0.59 0.00 41.51 0.98
677 781 6.616017 TGCGAACATCAAGTTGCAATATTAA 58.384 32.000 0.59 0.00 41.51 1.40
678 782 6.746822 TGCGAACATCAAGTTGCAATATTAAG 59.253 34.615 0.59 0.00 41.51 1.85
679 783 6.747280 GCGAACATCAAGTTGCAATATTAAGT 59.253 34.615 0.59 0.00 41.51 2.24
680 784 7.253420 GCGAACATCAAGTTGCAATATTAAGTG 60.253 37.037 0.59 3.87 41.51 3.16
681 785 7.962373 CGAACATCAAGTTGCAATATTAAGTGA 59.038 33.333 0.59 0.00 41.51 3.41
682 786 9.624697 GAACATCAAGTTGCAATATTAAGTGAA 57.375 29.630 0.59 0.00 41.51 3.18
684 788 9.793252 ACATCAAGTTGCAATATTAAGTGAATC 57.207 29.630 0.59 0.00 0.00 2.52
713 817 4.203226 TCAACCAACATGTAGAGCAACAA 58.797 39.130 0.00 0.00 32.02 2.83
714 818 4.275689 TCAACCAACATGTAGAGCAACAAG 59.724 41.667 0.00 0.00 32.02 3.16
715 819 3.149196 ACCAACATGTAGAGCAACAAGG 58.851 45.455 0.00 0.00 32.02 3.61
717 821 3.438087 CCAACATGTAGAGCAACAAGGAG 59.562 47.826 0.00 0.00 32.02 3.69
718 822 2.704572 ACATGTAGAGCAACAAGGAGC 58.295 47.619 0.00 0.00 32.02 4.70
719 823 2.038952 ACATGTAGAGCAACAAGGAGCA 59.961 45.455 0.00 0.00 32.02 4.26
720 824 2.928801 TGTAGAGCAACAAGGAGCAA 57.071 45.000 0.00 0.00 0.00 3.91
721 825 3.207265 TGTAGAGCAACAAGGAGCAAA 57.793 42.857 0.00 0.00 0.00 3.68
722 826 3.550820 TGTAGAGCAACAAGGAGCAAAA 58.449 40.909 0.00 0.00 0.00 2.44
723 827 3.315191 TGTAGAGCAACAAGGAGCAAAAC 59.685 43.478 0.00 0.00 0.00 2.43
724 828 2.659428 AGAGCAACAAGGAGCAAAACT 58.341 42.857 0.00 0.00 0.00 2.66
725 829 3.026694 AGAGCAACAAGGAGCAAAACTT 58.973 40.909 0.00 0.00 0.00 2.66
729 1456 5.351458 AGCAACAAGGAGCAAAACTTAAAG 58.649 37.500 0.00 0.00 0.00 1.85
733 1460 5.660460 ACAAGGAGCAAAACTTAAAGGTTG 58.340 37.500 0.00 0.00 0.00 3.77
748 1475 2.952273 GTTGAAACCACACAACGCC 58.048 52.632 0.00 0.00 37.29 5.68
751 1478 4.244802 AAACCACACAACGCCGCG 62.245 61.111 12.14 12.14 0.00 6.46
764 1491 2.887568 CCGCGAGTGGATCTGTGC 60.888 66.667 8.23 0.00 0.00 4.57
786 1513 3.504863 CCGCAAAAGAAACCATGATCTG 58.495 45.455 0.00 0.00 0.00 2.90
790 1517 5.334802 CGCAAAAGAAACCATGATCTGTACA 60.335 40.000 0.00 0.00 0.00 2.90
791 1518 6.623549 CGCAAAAGAAACCATGATCTGTACAT 60.624 38.462 0.00 0.00 0.00 2.29
795 1530 8.585471 AAAGAAACCATGATCTGTACATCATT 57.415 30.769 8.88 0.00 40.86 2.57
807 1542 0.850100 ACATCATTATCCGCCCCCAA 59.150 50.000 0.00 0.00 0.00 4.12
821 1556 1.228124 CCCAACCAACGAAGGAGCA 60.228 57.895 4.96 0.00 0.00 4.26
861 1596 2.198827 ATCCGCACAAGTTTCCATCA 57.801 45.000 0.00 0.00 0.00 3.07
911 1648 1.135689 CCCTTGTCATTTCGCTTTCCG 60.136 52.381 0.00 0.00 38.61 4.30
945 1682 1.151172 CCTGTACATACATGCGCGCA 61.151 55.000 38.27 38.27 35.36 6.09
948 1685 0.581529 GTACATACATGCGCGCACAT 59.418 50.000 39.05 28.79 0.00 3.21
949 1686 0.858583 TACATACATGCGCGCACATC 59.141 50.000 39.05 4.43 0.00 3.06
957 1696 3.545481 CGCGCACATCCACGAGAC 61.545 66.667 8.75 0.00 0.00 3.36
1123 1862 2.686915 GAGAAGCTGATGGTGGAAATGG 59.313 50.000 0.00 0.00 0.00 3.16
1189 1928 4.709250 GTCCCCTTGAACATATCCTCTTC 58.291 47.826 0.00 0.00 0.00 2.87
1195 1934 5.221621 CCTTGAACATATCCTCTTCTCTCCC 60.222 48.000 0.00 0.00 0.00 4.30
1229 1971 3.678915 TGTCTATGATGTGCATTTGCG 57.321 42.857 0.00 0.00 45.83 4.85
1233 1975 5.296531 TGTCTATGATGTGCATTTGCGTTAT 59.703 36.000 0.00 0.00 45.83 1.89
1416 2166 1.255667 GCACGTCCCTAGGTTCCAGA 61.256 60.000 8.29 0.00 0.00 3.86
1564 2315 6.132056 CACACTTCAGAATTCTTCAGTTTCG 58.868 40.000 4.86 2.31 0.00 3.46
1587 2564 2.529151 CTTGCACCAAACAGTCACAAC 58.471 47.619 0.00 0.00 0.00 3.32
1692 2673 0.940126 GTTAGCCCACATCTGCATCG 59.060 55.000 0.00 0.00 0.00 3.84
1715 2697 3.006247 GTTTTCAGGCCACTTGCAAAAA 58.994 40.909 5.01 0.00 43.89 1.94
1871 2861 1.019278 GCGGGCGATTCAGAGTTCAA 61.019 55.000 0.00 0.00 0.00 2.69
1894 2884 5.897377 AAATGGTGTAAGTATGCTTCCAC 57.103 39.130 10.21 10.21 39.78 4.02
1900 2890 5.240844 GGTGTAAGTATGCTTCCACTGTTTT 59.759 40.000 16.56 0.00 40.19 2.43
1903 2893 5.948992 AAGTATGCTTCCACTGTTTTCTC 57.051 39.130 0.00 0.00 0.00 2.87
1904 2894 3.997021 AGTATGCTTCCACTGTTTTCTCG 59.003 43.478 0.00 0.00 0.00 4.04
1905 2895 2.325583 TGCTTCCACTGTTTTCTCGT 57.674 45.000 0.00 0.00 0.00 4.18
1907 2897 2.354510 TGCTTCCACTGTTTTCTCGTTG 59.645 45.455 0.00 0.00 0.00 4.10
1908 2898 2.854805 GCTTCCACTGTTTTCTCGTTGC 60.855 50.000 0.00 0.00 0.00 4.17
1911 2901 1.597937 CCACTGTTTTCTCGTTGCTGC 60.598 52.381 0.00 0.00 0.00 5.25
1912 2902 1.063912 CACTGTTTTCTCGTTGCTGCA 59.936 47.619 0.00 0.00 0.00 4.41
1913 2903 1.949525 ACTGTTTTCTCGTTGCTGCAT 59.050 42.857 1.84 0.00 0.00 3.96
1914 2904 2.287188 ACTGTTTTCTCGTTGCTGCATG 60.287 45.455 1.84 0.00 0.00 4.06
1916 2906 0.039256 TTTTCTCGTTGCTGCATGCC 60.039 50.000 16.68 0.28 42.00 4.40
1917 2907 1.171549 TTTCTCGTTGCTGCATGCCA 61.172 50.000 16.68 3.51 42.00 4.92
1932 2941 0.899019 TGCCAGCATGCATTCAACAT 59.101 45.000 21.98 0.00 36.04 2.71
1953 2962 0.666913 AGTTTGCTGCTCAGTGCTTG 59.333 50.000 0.00 0.00 43.37 4.01
1956 2965 1.449726 TTGCTGCTCAGTGCTTGGTG 61.450 55.000 0.00 0.00 43.37 4.17
1957 2966 1.895707 GCTGCTCAGTGCTTGGTGT 60.896 57.895 0.00 0.00 43.37 4.16
1958 2967 0.603707 GCTGCTCAGTGCTTGGTGTA 60.604 55.000 0.00 0.00 43.37 2.90
1968 2983 1.134818 TGCTTGGTGTATGCCTCTACG 60.135 52.381 0.00 0.00 0.00 3.51
1987 3002 3.515630 ACGTATGCAGTCTTCAGTCATG 58.484 45.455 0.00 0.00 0.00 3.07
2154 3245 0.611618 TCGGCCATGGTTTTGAGCAT 60.612 50.000 14.67 0.00 0.00 3.79
2234 3328 2.358369 ACTGCGACGACCTCGAGA 60.358 61.111 15.71 0.00 46.14 4.04
2376 3480 0.685785 TGTGTTGAAAGGGCTTGGCA 60.686 50.000 0.00 0.00 0.00 4.92
2406 3511 2.782615 GACGAATTTCCGGCCACG 59.217 61.111 2.24 0.36 40.55 4.94
2496 3602 3.073356 TCCGGTCTTCCCACAGTAAATTT 59.927 43.478 0.00 0.00 0.00 1.82
2526 3632 0.539986 TACGATGCCTTGGACCTTCC 59.460 55.000 0.00 0.00 36.96 3.46
2689 3809 2.544069 CCAAACCGCATTTTTACACCGT 60.544 45.455 0.00 0.00 0.00 4.83
2752 3873 2.825532 AGTGCTTTTTCCCGCAATATGT 59.174 40.909 0.00 0.00 37.97 2.29
2799 3920 8.896744 CCTATTTCATCTTGAATTCAGCTTACA 58.103 33.333 8.41 0.00 36.11 2.41
2800 3921 9.932699 CTATTTCATCTTGAATTCAGCTTACAG 57.067 33.333 8.41 2.28 36.11 2.74
2870 3991 4.036852 TCAGCATCCGATCACTAGTAACTG 59.963 45.833 0.00 0.00 0.00 3.16
2969 4090 4.451150 TAAGGCGGCGCTCAGTGG 62.451 66.667 32.30 0.00 0.00 4.00
3147 5367 3.822735 CTGCCTTGAGGACATTTCTGAAA 59.177 43.478 5.15 5.15 37.39 2.69
3159 5379 4.256920 CATTTCTGAAATCGTCTCCAGGT 58.743 43.478 12.50 0.00 0.00 4.00
3201 5421 1.872653 GCTCTGAAACCGTTCGAAGGT 60.873 52.381 16.01 13.83 45.29 3.50
3216 5436 1.278127 GAAGGTGAATCGAAGGTGGGA 59.722 52.381 0.00 0.00 0.00 4.37
3365 5588 3.939066 ACTTGTGTATGTGGGCTTCTAC 58.061 45.455 0.00 0.00 0.00 2.59
3373 5596 1.037579 GTGGGCTTCTACCAATGGGC 61.038 60.000 3.55 0.00 40.24 5.36
3376 5599 1.387295 GGCTTCTACCAATGGGCAGC 61.387 60.000 3.55 5.02 37.90 5.25
3377 5600 0.680921 GCTTCTACCAATGGGCAGCA 60.681 55.000 3.55 0.00 37.90 4.41
3460 5683 3.056328 GGTGCCGCCCAAGAAGTC 61.056 66.667 0.00 0.00 0.00 3.01
3490 5713 2.086054 ATCCTTGTGACTCGACTTGC 57.914 50.000 0.00 0.00 0.00 4.01
3509 5732 7.414651 CGACTTGCCACAACATTATACCATTTA 60.415 37.037 0.00 0.00 0.00 1.40
3510 5733 7.771183 ACTTGCCACAACATTATACCATTTAG 58.229 34.615 0.00 0.00 0.00 1.85
3531 5755 3.261137 AGTTAGGTTAGGCCACTGAGTTC 59.739 47.826 5.01 0.00 40.61 3.01
3547 5771 6.037610 CACTGAGTTCTAGGGTTTATGCATTC 59.962 42.308 3.54 0.00 0.00 2.67
3550 5774 4.876107 AGTTCTAGGGTTTATGCATTCGTG 59.124 41.667 3.54 0.00 0.00 4.35
3571 5795 6.320418 TCGTGAGTGGCTAGAAATTCTATACA 59.680 38.462 2.87 3.32 0.00 2.29
3615 5839 8.247562 TCTTGTTAAAACTTGTGCACTTGTAAT 58.752 29.630 19.41 10.85 0.00 1.89
3659 5883 5.186409 AATGTCTTATGCACAAAGAAGGCAT 59.814 36.000 13.42 10.42 44.07 4.40
3660 5884 4.082625 TGTCTTATGCACAAAGAAGGCATG 60.083 41.667 13.42 0.00 46.82 4.06
3703 5927 1.595929 ACGCGTCAAAACCCGTCAT 60.596 52.632 5.58 0.00 35.02 3.06
3717 5941 1.078497 GTCATCGGTGATGGGTGCA 60.078 57.895 0.00 0.00 40.15 4.57
3721 5945 1.267574 ATCGGTGATGGGTGCAGACT 61.268 55.000 0.00 0.00 0.00 3.24
3792 6022 5.097742 AGACATGGTTGACGATGGAATTA 57.902 39.130 10.25 0.00 36.55 1.40
3808 6038 5.117584 TGGAATTATGCCATGAAAACATGC 58.882 37.500 0.00 0.00 0.00 4.06
3898 6128 3.324846 TGTGCAGAAGGCCACCTATATAG 59.675 47.826 5.01 2.46 43.89 1.31
3924 6154 6.453092 GGCTATCCGCTAATTACAACTCTAA 58.547 40.000 0.00 0.00 39.13 2.10
3992 6885 3.435186 GAGACCGCCTGCCTTTGC 61.435 66.667 0.00 0.00 38.26 3.68
4006 6899 3.444742 TGCCTTTGCCTTTGATACATGAG 59.555 43.478 0.00 0.00 36.33 2.90
4009 6902 5.678107 GCCTTTGCCTTTGATACATGAGAAG 60.678 44.000 0.00 0.00 0.00 2.85
4016 6909 6.375455 GCCTTTGATACATGAGAAGAAAAGGA 59.625 38.462 21.96 0.00 43.23 3.36
4017 6910 7.094205 GCCTTTGATACATGAGAAGAAAAGGAA 60.094 37.037 21.96 0.00 43.23 3.36
4158 7135 7.698836 TTACTTACACGACCTGTAACTTTTC 57.301 36.000 0.00 0.00 39.93 2.29
4242 7219 9.554724 GATTCAAGTCAAAACTAATATGCGAAA 57.445 29.630 0.00 0.00 33.48 3.46
4289 7266 5.906113 TTCTAAGAGCTTGAGGTAGACAG 57.094 43.478 0.00 0.00 0.00 3.51
4298 7275 1.683385 TGAGGTAGACAGCATCATCGG 59.317 52.381 0.00 0.00 0.00 4.18
4336 7329 3.438087 GTCACCATTGATGTTCCACTCAG 59.562 47.826 0.00 0.00 33.11 3.35
4414 7407 7.456684 TGTCATAAATCACCAAAAACAAACG 57.543 32.000 0.00 0.00 0.00 3.60
4415 7408 6.477033 TGTCATAAATCACCAAAAACAAACGG 59.523 34.615 0.00 0.00 0.00 4.44
4417 7410 7.383843 GTCATAAATCACCAAAAACAAACGGAT 59.616 33.333 0.00 0.00 0.00 4.18
4418 7411 7.928706 TCATAAATCACCAAAAACAAACGGATT 59.071 29.630 0.00 0.00 0.00 3.01
4419 7412 6.597262 AAATCACCAAAAACAAACGGATTC 57.403 33.333 0.00 0.00 0.00 2.52
4420 7413 4.993029 TCACCAAAAACAAACGGATTCT 57.007 36.364 0.00 0.00 0.00 2.40
4423 7416 7.747155 TCACCAAAAACAAACGGATTCTATA 57.253 32.000 0.00 0.00 0.00 1.31
4424 7417 8.167605 TCACCAAAAACAAACGGATTCTATAA 57.832 30.769 0.00 0.00 0.00 0.98
4425 7418 8.077386 TCACCAAAAACAAACGGATTCTATAAC 58.923 33.333 0.00 0.00 0.00 1.89
4426 7419 8.079809 CACCAAAAACAAACGGATTCTATAACT 58.920 33.333 0.00 0.00 0.00 2.24
4427 7420 8.294577 ACCAAAAACAAACGGATTCTATAACTC 58.705 33.333 0.00 0.00 0.00 3.01
4428 7421 7.753580 CCAAAAACAAACGGATTCTATAACTCC 59.246 37.037 0.00 0.00 0.00 3.85
4435 8082 3.004106 CGGATTCTATAACTCCCGAACGT 59.996 47.826 0.00 0.00 39.31 3.99
4437 8084 4.037208 GGATTCTATAACTCCCGAACGTCA 59.963 45.833 0.00 0.00 0.00 4.35
4439 8086 2.947652 TCTATAACTCCCGAACGTCAGG 59.052 50.000 0.00 0.00 0.00 3.86
4440 8087 1.843368 ATAACTCCCGAACGTCAGGA 58.157 50.000 10.45 5.99 0.00 3.86
4441 8088 1.843368 TAACTCCCGAACGTCAGGAT 58.157 50.000 10.45 0.00 0.00 3.24
4448 8095 1.323534 CCGAACGTCAGGATTTTAGCG 59.676 52.381 3.39 0.00 0.00 4.26
4450 8097 2.410730 CGAACGTCAGGATTTTAGCGTT 59.589 45.455 0.00 0.00 43.69 4.84
4451 8098 3.120786 CGAACGTCAGGATTTTAGCGTTT 60.121 43.478 0.00 0.00 41.59 3.60
4452 8099 3.806316 ACGTCAGGATTTTAGCGTTTG 57.194 42.857 0.00 0.00 0.00 2.93
4453 8100 2.482721 ACGTCAGGATTTTAGCGTTTGG 59.517 45.455 0.00 0.00 0.00 3.28
4456 8103 3.078837 TCAGGATTTTAGCGTTTGGTCC 58.921 45.455 0.00 0.00 0.00 4.46
4457 8104 2.163613 CAGGATTTTAGCGTTTGGTCCC 59.836 50.000 0.00 0.00 0.00 4.46
4475 8122 4.719369 GAACGCCTCGAGTGCCGT 62.719 66.667 12.31 13.69 39.75 5.68
4476 8123 4.719369 AACGCCTCGAGTGCCGTC 62.719 66.667 18.83 0.00 39.75 4.79
4481 8128 1.226802 CCTCGAGTGCCGTCAGATG 60.227 63.158 12.31 0.00 39.75 2.90
4482 8129 1.657751 CCTCGAGTGCCGTCAGATGA 61.658 60.000 12.31 0.00 39.75 2.92
4483 8130 0.383590 CTCGAGTGCCGTCAGATGAT 59.616 55.000 3.62 0.00 39.75 2.45
4484 8131 0.817654 TCGAGTGCCGTCAGATGATT 59.182 50.000 0.00 0.00 39.75 2.57
4485 8132 1.204704 TCGAGTGCCGTCAGATGATTT 59.795 47.619 0.00 0.00 39.75 2.17
4486 8133 1.325640 CGAGTGCCGTCAGATGATTTG 59.674 52.381 0.00 0.00 0.00 2.32
4487 8134 1.063174 GAGTGCCGTCAGATGATTTGC 59.937 52.381 0.00 0.00 0.00 3.68
4488 8135 0.804364 GTGCCGTCAGATGATTTGCA 59.196 50.000 0.00 0.00 0.00 4.08
4489 8136 0.804364 TGCCGTCAGATGATTTGCAC 59.196 50.000 0.00 0.00 0.00 4.57
4490 8137 0.804364 GCCGTCAGATGATTTGCACA 59.196 50.000 0.00 0.00 0.00 4.57
4491 8138 1.466360 GCCGTCAGATGATTTGCACAC 60.466 52.381 0.00 0.00 0.00 3.82
4492 8139 1.805943 CCGTCAGATGATTTGCACACA 59.194 47.619 0.00 0.00 0.00 3.72
4494 8141 3.486375 CCGTCAGATGATTTGCACACATC 60.486 47.826 14.96 14.96 40.14 3.06
4496 8143 4.142752 CGTCAGATGATTTGCACACATCTT 60.143 41.667 19.89 7.10 45.27 2.40
4498 8145 6.484540 GTCAGATGATTTGCACACATCTTAG 58.515 40.000 19.89 13.32 45.27 2.18
4499 8146 6.314648 GTCAGATGATTTGCACACATCTTAGA 59.685 38.462 19.89 14.76 45.27 2.10
4500 8147 6.537660 TCAGATGATTTGCACACATCTTAGAG 59.462 38.462 19.89 12.60 45.27 2.43
4501 8148 4.952262 TGATTTGCACACATCTTAGAGC 57.048 40.909 0.00 0.00 0.00 4.09
4502 8149 4.325972 TGATTTGCACACATCTTAGAGCA 58.674 39.130 0.00 0.00 0.00 4.26
4503 8150 4.393990 TGATTTGCACACATCTTAGAGCAG 59.606 41.667 0.00 0.00 33.14 4.24
4505 8152 1.625315 TGCACACATCTTAGAGCAGGT 59.375 47.619 0.00 0.00 0.00 4.00
4508 8155 3.257393 CACACATCTTAGAGCAGGTGAC 58.743 50.000 11.22 0.00 0.00 3.67
4510 8157 3.257393 CACATCTTAGAGCAGGTGACAC 58.743 50.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.981859 AGACGGTTGTTCAGACAGTT 57.018 45.000 0.00 0.00 37.04 3.16
5 6 4.369182 AGTTTAGACGGTTGTTCAGACAG 58.631 43.478 0.00 0.00 37.04 3.51
7 8 5.285607 CGATAGTTTAGACGGTTGTTCAGAC 59.714 44.000 0.00 0.00 0.00 3.51
8 9 5.396484 CGATAGTTTAGACGGTTGTTCAGA 58.604 41.667 0.00 0.00 0.00 3.27
9 10 4.031426 GCGATAGTTTAGACGGTTGTTCAG 59.969 45.833 0.00 0.00 39.35 3.02
10 11 3.922240 GCGATAGTTTAGACGGTTGTTCA 59.078 43.478 0.00 0.00 39.35 3.18
11 12 3.922240 TGCGATAGTTTAGACGGTTGTTC 59.078 43.478 0.00 0.00 39.35 3.18
12 13 3.916761 TGCGATAGTTTAGACGGTTGTT 58.083 40.909 0.00 0.00 39.35 2.83
13 14 3.581024 TGCGATAGTTTAGACGGTTGT 57.419 42.857 0.00 0.00 39.35 3.32
14 15 4.624024 TCTTTGCGATAGTTTAGACGGTTG 59.376 41.667 0.00 0.00 39.35 3.77
15 16 4.813027 TCTTTGCGATAGTTTAGACGGTT 58.187 39.130 0.00 0.00 39.35 4.44
16 17 4.421948 CTCTTTGCGATAGTTTAGACGGT 58.578 43.478 0.00 0.00 39.35 4.83
17 18 3.243177 GCTCTTTGCGATAGTTTAGACGG 59.757 47.826 0.00 0.00 39.35 4.79
18 19 3.857665 TGCTCTTTGCGATAGTTTAGACG 59.142 43.478 0.00 0.00 46.63 4.18
19 20 5.292101 ACATGCTCTTTGCGATAGTTTAGAC 59.708 40.000 0.00 0.00 46.63 2.59
20 21 5.419542 ACATGCTCTTTGCGATAGTTTAGA 58.580 37.500 0.00 0.00 46.63 2.10
21 22 5.725110 ACATGCTCTTTGCGATAGTTTAG 57.275 39.130 0.00 0.00 46.63 1.85
22 23 5.231357 CGTACATGCTCTTTGCGATAGTTTA 59.769 40.000 0.00 0.00 46.63 2.01
23 24 4.032900 CGTACATGCTCTTTGCGATAGTTT 59.967 41.667 0.00 0.00 46.63 2.66
28 29 1.290203 CCGTACATGCTCTTTGCGAT 58.710 50.000 0.00 0.00 46.63 4.58
37 38 2.540515 CTCAAATCGACCGTACATGCT 58.459 47.619 0.00 0.00 0.00 3.79
38 39 1.593006 CCTCAAATCGACCGTACATGC 59.407 52.381 0.00 0.00 0.00 4.06
42 43 1.475682 AGACCCTCAAATCGACCGTAC 59.524 52.381 0.00 0.00 0.00 3.67
63 64 3.147595 TCAGGGCATCTCCGACGG 61.148 66.667 7.84 7.84 34.94 4.79
64 65 2.105128 GTCAGGGCATCTCCGACG 59.895 66.667 0.00 0.00 34.94 5.12
68 69 0.257039 ATGGTTGTCAGGGCATCTCC 59.743 55.000 0.00 0.00 0.00 3.71
104 201 4.253685 GCTAAATGCAACTACAGTGGAGA 58.746 43.478 10.09 0.00 42.31 3.71
105 202 4.606457 GCTAAATGCAACTACAGTGGAG 57.394 45.455 0.00 0.00 42.31 3.86
119 216 9.585099 TGCTGGATAAATAAGTTTTGCTAAATG 57.415 29.630 0.00 0.00 0.00 2.32
157 256 5.457140 ACTGGCACACGTACATTAATTTTG 58.543 37.500 0.00 0.00 0.00 2.44
166 265 4.448395 GTGTTATAAACTGGCACACGTACA 59.552 41.667 0.00 0.00 0.00 2.90
178 277 6.762661 ACATAATTACCCGCGTGTTATAAACT 59.237 34.615 4.92 0.00 0.00 2.66
179 278 6.947258 ACATAATTACCCGCGTGTTATAAAC 58.053 36.000 4.92 0.00 0.00 2.01
180 279 7.925483 ACTACATAATTACCCGCGTGTTATAAA 59.075 33.333 4.92 0.00 0.00 1.40
193 292 8.585881 TGGAGATGCTCTTACTACATAATTACC 58.414 37.037 0.00 0.00 0.00 2.85
195 294 9.982651 GTTGGAGATGCTCTTACTACATAATTA 57.017 33.333 0.00 0.00 0.00 1.40
197 296 7.148641 CGTTGGAGATGCTCTTACTACATAAT 58.851 38.462 0.00 0.00 0.00 1.28
202 301 4.373348 ACGTTGGAGATGCTCTTACTAC 57.627 45.455 0.00 0.00 0.00 2.73
267 371 1.983691 CCCTATCTGCTGTCCATGGAT 59.016 52.381 19.62 1.85 0.00 3.41
272 376 0.982852 CACCCCCTATCTGCTGTCCA 60.983 60.000 0.00 0.00 0.00 4.02
273 377 1.700042 CCACCCCCTATCTGCTGTCC 61.700 65.000 0.00 0.00 0.00 4.02
274 378 1.832912 CCACCCCCTATCTGCTGTC 59.167 63.158 0.00 0.00 0.00 3.51
279 383 1.763770 GATGGCCACCCCCTATCTG 59.236 63.158 8.16 0.00 0.00 2.90
305 409 3.665745 ATGGACAAACATTTGGAGCAC 57.334 42.857 9.09 0.00 42.34 4.40
338 442 9.574516 AGACATTTGGTTTACTGTTATTCTTCT 57.425 29.630 0.00 0.00 0.00 2.85
341 445 9.227777 GGTAGACATTTGGTTTACTGTTATTCT 57.772 33.333 0.00 0.00 37.28 2.40
342 446 9.005777 TGGTAGACATTTGGTTTACTGTTATTC 57.994 33.333 0.00 0.00 37.28 1.75
343 447 8.927675 TGGTAGACATTTGGTTTACTGTTATT 57.072 30.769 0.00 0.00 37.28 1.40
344 448 8.956426 CATGGTAGACATTTGGTTTACTGTTAT 58.044 33.333 0.00 0.00 37.84 1.89
345 449 7.094549 GCATGGTAGACATTTGGTTTACTGTTA 60.095 37.037 0.00 0.00 37.84 2.41
346 450 6.294508 GCATGGTAGACATTTGGTTTACTGTT 60.295 38.462 0.00 0.00 37.84 3.16
347 451 5.183140 GCATGGTAGACATTTGGTTTACTGT 59.817 40.000 0.00 0.00 37.84 3.55
348 452 5.640732 GCATGGTAGACATTTGGTTTACTG 58.359 41.667 0.00 0.00 37.84 2.74
349 453 4.394920 CGCATGGTAGACATTTGGTTTACT 59.605 41.667 0.00 0.00 37.84 2.24
350 454 4.438200 CCGCATGGTAGACATTTGGTTTAC 60.438 45.833 0.00 0.00 37.84 2.01
351 455 3.692101 CCGCATGGTAGACATTTGGTTTA 59.308 43.478 0.00 0.00 37.84 2.01
352 456 2.491693 CCGCATGGTAGACATTTGGTTT 59.508 45.455 0.00 0.00 37.84 3.27
353 457 2.091541 CCGCATGGTAGACATTTGGTT 58.908 47.619 0.00 0.00 37.84 3.67
354 458 1.750193 CCGCATGGTAGACATTTGGT 58.250 50.000 0.00 0.00 37.84 3.67
355 459 0.381801 GCCGCATGGTAGACATTTGG 59.618 55.000 0.00 0.00 37.84 3.28
356 460 0.381801 GGCCGCATGGTAGACATTTG 59.618 55.000 0.00 0.00 37.84 2.32
357 461 0.255890 AGGCCGCATGGTAGACATTT 59.744 50.000 0.00 0.00 37.84 2.32
358 462 0.179045 GAGGCCGCATGGTAGACATT 60.179 55.000 0.00 0.00 37.84 2.71
359 463 1.337384 TGAGGCCGCATGGTAGACAT 61.337 55.000 4.49 0.00 41.57 3.06
360 464 1.987306 TGAGGCCGCATGGTAGACA 60.987 57.895 4.49 0.00 37.67 3.41
361 465 1.521681 GTGAGGCCGCATGGTAGAC 60.522 63.158 13.89 0.00 37.67 2.59
362 466 1.264749 AAGTGAGGCCGCATGGTAGA 61.265 55.000 13.89 0.00 37.67 2.59
363 467 0.392998 AAAGTGAGGCCGCATGGTAG 60.393 55.000 13.89 0.00 37.67 3.18
364 468 0.676466 CAAAGTGAGGCCGCATGGTA 60.676 55.000 13.89 0.00 37.67 3.25
365 469 1.973281 CAAAGTGAGGCCGCATGGT 60.973 57.895 13.89 0.00 37.67 3.55
366 470 1.243342 TTCAAAGTGAGGCCGCATGG 61.243 55.000 13.89 2.84 38.77 3.66
367 471 0.813184 ATTCAAAGTGAGGCCGCATG 59.187 50.000 13.89 7.40 0.00 4.06
368 472 1.098050 GATTCAAAGTGAGGCCGCAT 58.902 50.000 13.89 0.00 0.00 4.73
369 473 0.250684 TGATTCAAAGTGAGGCCGCA 60.251 50.000 4.49 4.49 0.00 5.69
370 474 1.064654 GATGATTCAAAGTGAGGCCGC 59.935 52.381 0.00 0.00 0.00 6.53
371 475 1.328680 CGATGATTCAAAGTGAGGCCG 59.671 52.381 0.00 0.00 0.00 6.13
372 476 2.632377 TCGATGATTCAAAGTGAGGCC 58.368 47.619 0.00 0.00 0.00 5.19
373 477 3.060003 CGATCGATGATTCAAAGTGAGGC 60.060 47.826 10.26 0.00 0.00 4.70
374 478 4.363138 TCGATCGATGATTCAAAGTGAGG 58.637 43.478 15.15 0.00 0.00 3.86
375 479 6.088749 GGTATCGATCGATGATTCAAAGTGAG 59.911 42.308 34.92 0.00 36.17 3.51
376 480 5.920840 GGTATCGATCGATGATTCAAAGTGA 59.079 40.000 34.92 12.14 36.17 3.41
377 481 5.691754 TGGTATCGATCGATGATTCAAAGTG 59.308 40.000 34.92 0.00 36.17 3.16
378 482 5.842907 TGGTATCGATCGATGATTCAAAGT 58.157 37.500 34.92 12.66 36.17 2.66
379 483 6.769608 TTGGTATCGATCGATGATTCAAAG 57.230 37.500 34.92 0.00 36.17 2.77
380 484 7.440856 TGAATTGGTATCGATCGATGATTCAAA 59.559 33.333 34.92 22.17 33.55 2.69
381 485 6.928492 TGAATTGGTATCGATCGATGATTCAA 59.072 34.615 34.92 28.75 33.55 2.69
382 486 6.454795 TGAATTGGTATCGATCGATGATTCA 58.545 36.000 34.92 32.27 36.17 2.57
383 487 6.951256 TGAATTGGTATCGATCGATGATTC 57.049 37.500 34.92 30.75 36.17 2.52
384 488 6.931281 AGTTGAATTGGTATCGATCGATGATT 59.069 34.615 34.92 26.55 36.17 2.57
385 489 6.459066 AGTTGAATTGGTATCGATCGATGAT 58.541 36.000 34.92 21.34 36.17 2.45
386 490 5.842907 AGTTGAATTGGTATCGATCGATGA 58.157 37.500 34.92 20.25 36.17 2.92
387 491 7.670007 CATAGTTGAATTGGTATCGATCGATG 58.330 38.462 34.92 14.14 36.17 3.84
388 492 6.311445 GCATAGTTGAATTGGTATCGATCGAT 59.689 38.462 31.39 31.39 38.54 3.59
389 493 5.633601 GCATAGTTGAATTGGTATCGATCGA 59.366 40.000 21.86 21.86 0.00 3.59
390 494 5.405269 TGCATAGTTGAATTGGTATCGATCG 59.595 40.000 9.36 9.36 0.00 3.69
391 495 6.785488 TGCATAGTTGAATTGGTATCGATC 57.215 37.500 0.00 0.00 0.00 3.69
392 496 7.750229 AATGCATAGTTGAATTGGTATCGAT 57.250 32.000 0.00 2.16 29.31 3.59
393 497 7.566760 AAATGCATAGTTGAATTGGTATCGA 57.433 32.000 0.00 0.00 31.03 3.59
394 498 9.729023 TTTAAATGCATAGTTGAATTGGTATCG 57.271 29.630 0.00 0.00 31.03 2.92
422 526 8.524487 TGTTAAACATCCGGCATTTTTATTAGT 58.476 29.630 0.00 0.00 0.00 2.24
423 527 8.918961 TGTTAAACATCCGGCATTTTTATTAG 57.081 30.769 0.00 0.00 0.00 1.73
424 528 9.360093 CTTGTTAAACATCCGGCATTTTTATTA 57.640 29.630 0.00 0.00 0.00 0.98
425 529 7.875554 ACTTGTTAAACATCCGGCATTTTTATT 59.124 29.630 0.00 0.00 0.00 1.40
426 530 7.382898 ACTTGTTAAACATCCGGCATTTTTAT 58.617 30.769 0.00 0.00 0.00 1.40
427 531 6.750148 ACTTGTTAAACATCCGGCATTTTTA 58.250 32.000 0.00 0.00 0.00 1.52
428 532 5.606505 ACTTGTTAAACATCCGGCATTTTT 58.393 33.333 0.00 0.02 0.00 1.94
429 533 5.208463 ACTTGTTAAACATCCGGCATTTT 57.792 34.783 0.00 0.00 0.00 1.82
430 534 4.864704 ACTTGTTAAACATCCGGCATTT 57.135 36.364 0.00 0.00 0.00 2.32
431 535 4.864704 AACTTGTTAAACATCCGGCATT 57.135 36.364 0.00 0.00 0.00 3.56
432 536 4.864704 AAACTTGTTAAACATCCGGCAT 57.135 36.364 0.00 0.00 0.00 4.40
433 537 4.657436 AAAACTTGTTAAACATCCGGCA 57.343 36.364 0.00 0.00 0.00 5.69
434 538 7.466193 TTTAAAAACTTGTTAAACATCCGGC 57.534 32.000 0.00 0.00 0.00 6.13
445 549 9.283768 GGGATTGATGGATTTTAAAAACTTGTT 57.716 29.630 4.44 0.00 0.00 2.83
446 550 8.435982 TGGGATTGATGGATTTTAAAAACTTGT 58.564 29.630 4.44 0.00 0.00 3.16
447 551 8.845413 TGGGATTGATGGATTTTAAAAACTTG 57.155 30.769 4.44 0.00 0.00 3.16
448 552 9.859152 TTTGGGATTGATGGATTTTAAAAACTT 57.141 25.926 4.44 0.00 0.00 2.66
457 561 9.223291 TGGTTTATATTTGGGATTGATGGATTT 57.777 29.630 0.00 0.00 0.00 2.17
458 562 8.795899 TGGTTTATATTTGGGATTGATGGATT 57.204 30.769 0.00 0.00 0.00 3.01
459 563 8.977559 ATGGTTTATATTTGGGATTGATGGAT 57.022 30.769 0.00 0.00 0.00 3.41
460 564 9.308000 GTATGGTTTATATTTGGGATTGATGGA 57.692 33.333 0.00 0.00 0.00 3.41
461 565 8.531146 GGTATGGTTTATATTTGGGATTGATGG 58.469 37.037 0.00 0.00 0.00 3.51
462 566 9.312904 AGGTATGGTTTATATTTGGGATTGATG 57.687 33.333 0.00 0.00 0.00 3.07
463 567 9.533831 GAGGTATGGTTTATATTTGGGATTGAT 57.466 33.333 0.00 0.00 0.00 2.57
464 568 8.732854 AGAGGTATGGTTTATATTTGGGATTGA 58.267 33.333 0.00 0.00 0.00 2.57
465 569 8.940397 AGAGGTATGGTTTATATTTGGGATTG 57.060 34.615 0.00 0.00 0.00 2.67
466 570 7.883311 CGAGAGGTATGGTTTATATTTGGGATT 59.117 37.037 0.00 0.00 0.00 3.01
467 571 7.017254 ACGAGAGGTATGGTTTATATTTGGGAT 59.983 37.037 0.00 0.00 0.00 3.85
468 572 6.328148 ACGAGAGGTATGGTTTATATTTGGGA 59.672 38.462 0.00 0.00 0.00 4.37
469 573 6.531021 ACGAGAGGTATGGTTTATATTTGGG 58.469 40.000 0.00 0.00 0.00 4.12
470 574 9.204570 CTTACGAGAGGTATGGTTTATATTTGG 57.795 37.037 0.00 0.00 0.00 3.28
471 575 8.709646 GCTTACGAGAGGTATGGTTTATATTTG 58.290 37.037 0.00 0.00 0.00 2.32
472 576 7.597743 CGCTTACGAGAGGTATGGTTTATATTT 59.402 37.037 0.00 0.00 43.93 1.40
473 577 7.088905 CGCTTACGAGAGGTATGGTTTATATT 58.911 38.462 0.00 0.00 43.93 1.28
474 578 6.349944 CCGCTTACGAGAGGTATGGTTTATAT 60.350 42.308 0.00 0.00 43.93 0.86
475 579 5.048504 CCGCTTACGAGAGGTATGGTTTATA 60.049 44.000 0.00 0.00 43.93 0.98
476 580 4.261909 CCGCTTACGAGAGGTATGGTTTAT 60.262 45.833 0.00 0.00 43.93 1.40
477 581 3.067180 CCGCTTACGAGAGGTATGGTTTA 59.933 47.826 0.00 0.00 43.93 2.01
478 582 2.159142 CCGCTTACGAGAGGTATGGTTT 60.159 50.000 0.00 0.00 43.93 3.27
479 583 1.407979 CCGCTTACGAGAGGTATGGTT 59.592 52.381 0.00 0.00 43.93 3.67
480 584 1.030457 CCGCTTACGAGAGGTATGGT 58.970 55.000 0.00 0.00 43.93 3.55
481 585 0.318784 GCCGCTTACGAGAGGTATGG 60.319 60.000 0.00 0.00 44.00 2.74
482 586 0.318784 GGCCGCTTACGAGAGGTATG 60.319 60.000 0.00 0.00 44.00 2.39
483 587 0.467659 AGGCCGCTTACGAGAGGTAT 60.468 55.000 0.00 0.00 44.00 2.73
484 588 0.682209 AAGGCCGCTTACGAGAGGTA 60.682 55.000 0.00 0.00 44.00 3.08
485 589 1.946475 GAAGGCCGCTTACGAGAGGT 61.946 60.000 0.00 0.00 44.00 3.85
486 590 1.227002 GAAGGCCGCTTACGAGAGG 60.227 63.158 0.00 0.00 44.84 3.69
487 591 0.103208 ATGAAGGCCGCTTACGAGAG 59.897 55.000 0.00 0.00 43.93 3.20
488 592 0.102481 GATGAAGGCCGCTTACGAGA 59.898 55.000 0.00 0.00 43.93 4.04
489 593 0.103208 AGATGAAGGCCGCTTACGAG 59.897 55.000 0.00 0.00 43.93 4.18
490 594 0.102481 GAGATGAAGGCCGCTTACGA 59.898 55.000 0.00 0.00 43.93 3.43
491 595 0.179111 TGAGATGAAGGCCGCTTACG 60.179 55.000 0.00 0.00 39.67 3.18
492 596 2.246719 ATGAGATGAAGGCCGCTTAC 57.753 50.000 0.00 0.00 0.00 2.34
493 597 2.965831 AGTATGAGATGAAGGCCGCTTA 59.034 45.455 0.00 0.00 0.00 3.09
494 598 1.765314 AGTATGAGATGAAGGCCGCTT 59.235 47.619 0.00 0.00 0.00 4.68
495 599 1.418334 AGTATGAGATGAAGGCCGCT 58.582 50.000 0.00 0.00 0.00 5.52
496 600 2.139118 GAAGTATGAGATGAAGGCCGC 58.861 52.381 0.00 0.00 0.00 6.53
497 601 3.320541 AGAGAAGTATGAGATGAAGGCCG 59.679 47.826 0.00 0.00 0.00 6.13
498 602 4.262420 GGAGAGAAGTATGAGATGAAGGCC 60.262 50.000 0.00 0.00 0.00 5.19
499 603 4.588528 AGGAGAGAAGTATGAGATGAAGGC 59.411 45.833 0.00 0.00 0.00 4.35
500 604 5.048782 CGAGGAGAGAAGTATGAGATGAAGG 60.049 48.000 0.00 0.00 0.00 3.46
501 605 5.762711 TCGAGGAGAGAAGTATGAGATGAAG 59.237 44.000 0.00 0.00 0.00 3.02
502 606 5.685728 TCGAGGAGAGAAGTATGAGATGAA 58.314 41.667 0.00 0.00 0.00 2.57
503 607 5.297569 TCGAGGAGAGAAGTATGAGATGA 57.702 43.478 0.00 0.00 0.00 2.92
504 608 5.530915 AGTTCGAGGAGAGAAGTATGAGATG 59.469 44.000 0.00 0.00 30.23 2.90
505 609 5.690865 AGTTCGAGGAGAGAAGTATGAGAT 58.309 41.667 0.00 0.00 30.23 2.75
506 610 5.105567 AGTTCGAGGAGAGAAGTATGAGA 57.894 43.478 0.00 0.00 30.23 3.27
507 611 5.355630 TCAAGTTCGAGGAGAGAAGTATGAG 59.644 44.000 0.00 0.00 31.63 2.90
508 612 5.254115 TCAAGTTCGAGGAGAGAAGTATGA 58.746 41.667 0.00 0.00 31.63 2.15
509 613 5.568685 TCAAGTTCGAGGAGAGAAGTATG 57.431 43.478 0.00 0.00 31.63 2.39
510 614 6.591750 TTTCAAGTTCGAGGAGAGAAGTAT 57.408 37.500 0.00 0.00 31.63 2.12
511 615 6.591750 ATTTCAAGTTCGAGGAGAGAAGTA 57.408 37.500 0.00 0.00 31.63 2.24
512 616 4.939052 TTTCAAGTTCGAGGAGAGAAGT 57.061 40.909 0.00 0.00 33.10 3.01
513 617 6.793492 AAATTTCAAGTTCGAGGAGAGAAG 57.207 37.500 0.00 0.00 0.00 2.85
514 618 7.282224 TGAAAAATTTCAAGTTCGAGGAGAGAA 59.718 33.333 6.13 0.00 43.62 2.87
515 619 6.765989 TGAAAAATTTCAAGTTCGAGGAGAGA 59.234 34.615 6.13 0.00 43.62 3.10
516 620 6.959361 TGAAAAATTTCAAGTTCGAGGAGAG 58.041 36.000 6.13 0.00 43.62 3.20
517 621 6.935741 TGAAAAATTTCAAGTTCGAGGAGA 57.064 33.333 6.13 0.00 43.62 3.71
530 634 5.177327 ACAACATGTGGCGATGAAAAATTTC 59.823 36.000 0.00 0.00 37.69 2.17
531 635 5.055812 ACAACATGTGGCGATGAAAAATTT 58.944 33.333 0.00 0.00 0.00 1.82
532 636 4.630111 ACAACATGTGGCGATGAAAAATT 58.370 34.783 0.00 0.00 0.00 1.82
533 637 4.255833 ACAACATGTGGCGATGAAAAAT 57.744 36.364 0.00 0.00 0.00 1.82
534 638 3.724508 ACAACATGTGGCGATGAAAAA 57.275 38.095 0.00 0.00 0.00 1.94
535 639 3.067320 TGAACAACATGTGGCGATGAAAA 59.933 39.130 0.00 0.00 0.00 2.29
536 640 2.620585 TGAACAACATGTGGCGATGAAA 59.379 40.909 0.00 0.00 0.00 2.69
537 641 2.031245 GTGAACAACATGTGGCGATGAA 60.031 45.455 0.00 0.00 0.00 2.57
538 642 1.535028 GTGAACAACATGTGGCGATGA 59.465 47.619 0.00 0.00 0.00 2.92
539 643 1.401409 GGTGAACAACATGTGGCGATG 60.401 52.381 0.00 0.00 0.00 3.84
540 644 0.881118 GGTGAACAACATGTGGCGAT 59.119 50.000 0.00 0.00 0.00 4.58
541 645 1.169661 GGGTGAACAACATGTGGCGA 61.170 55.000 0.00 0.00 0.00 5.54
542 646 1.285641 GGGTGAACAACATGTGGCG 59.714 57.895 0.00 0.00 0.00 5.69
543 647 0.314935 CTGGGTGAACAACATGTGGC 59.685 55.000 0.00 0.00 0.00 5.01
544 648 1.979855 TCTGGGTGAACAACATGTGG 58.020 50.000 0.00 0.00 0.00 4.17
545 649 2.229543 CCATCTGGGTGAACAACATGTG 59.770 50.000 0.00 0.00 0.00 3.21
546 650 2.517959 CCATCTGGGTGAACAACATGT 58.482 47.619 0.00 0.00 0.00 3.21
569 673 1.304464 GGGTGAAGCTCAAAGGGGG 60.304 63.158 0.00 0.00 0.00 5.40
570 674 0.178964 TTGGGTGAAGCTCAAAGGGG 60.179 55.000 0.00 0.00 34.02 4.79
571 675 0.961753 GTTGGGTGAAGCTCAAAGGG 59.038 55.000 0.00 0.00 39.64 3.95
572 676 1.691196 TGTTGGGTGAAGCTCAAAGG 58.309 50.000 0.00 0.00 39.64 3.11
573 677 3.068590 ACATTGTTGGGTGAAGCTCAAAG 59.931 43.478 0.00 0.00 39.64 2.77
574 678 3.030291 ACATTGTTGGGTGAAGCTCAAA 58.970 40.909 0.00 0.00 39.64 2.69
575 679 2.361757 CACATTGTTGGGTGAAGCTCAA 59.638 45.455 0.00 0.00 37.18 3.02
576 680 1.955778 CACATTGTTGGGTGAAGCTCA 59.044 47.619 0.00 0.00 37.18 4.26
577 681 1.956477 ACACATTGTTGGGTGAAGCTC 59.044 47.619 0.00 0.00 38.34 4.09
578 682 1.956477 GACACATTGTTGGGTGAAGCT 59.044 47.619 0.00 0.00 40.43 3.74
579 683 1.680735 TGACACATTGTTGGGTGAAGC 59.319 47.619 0.00 0.00 40.43 3.86
580 684 3.705604 GTTGACACATTGTTGGGTGAAG 58.294 45.455 0.00 0.00 40.43 3.02
581 685 2.098280 CGTTGACACATTGTTGGGTGAA 59.902 45.455 0.00 0.00 40.43 3.18
582 686 1.673400 CGTTGACACATTGTTGGGTGA 59.327 47.619 0.00 0.00 40.43 4.02
583 687 1.403679 ACGTTGACACATTGTTGGGTG 59.596 47.619 0.00 0.00 40.43 4.61
584 688 1.403679 CACGTTGACACATTGTTGGGT 59.596 47.619 0.00 0.00 44.03 4.51
585 689 1.673400 TCACGTTGACACATTGTTGGG 59.327 47.619 0.00 0.00 0.00 4.12
586 690 3.362295 CTTCACGTTGACACATTGTTGG 58.638 45.455 0.00 0.00 0.00 3.77
587 691 3.362295 CCTTCACGTTGACACATTGTTG 58.638 45.455 0.00 0.00 0.00 3.33
588 692 2.357637 CCCTTCACGTTGACACATTGTT 59.642 45.455 0.00 0.00 0.00 2.83
589 693 1.946768 CCCTTCACGTTGACACATTGT 59.053 47.619 0.00 0.00 0.00 2.71
590 694 1.334960 GCCCTTCACGTTGACACATTG 60.335 52.381 0.00 0.00 0.00 2.82
591 695 0.951558 GCCCTTCACGTTGACACATT 59.048 50.000 0.00 0.00 0.00 2.71
592 696 0.108585 AGCCCTTCACGTTGACACAT 59.891 50.000 0.00 0.00 0.00 3.21
593 697 0.107410 AAGCCCTTCACGTTGACACA 60.107 50.000 0.00 0.00 0.00 3.72
594 698 0.307760 CAAGCCCTTCACGTTGACAC 59.692 55.000 0.00 0.00 0.00 3.67
595 699 1.444119 GCAAGCCCTTCACGTTGACA 61.444 55.000 0.00 0.00 0.00 3.58
596 700 1.282875 GCAAGCCCTTCACGTTGAC 59.717 57.895 0.00 0.00 0.00 3.18
597 701 1.896660 GGCAAGCCCTTCACGTTGA 60.897 57.895 0.00 0.00 0.00 3.18
598 702 2.644992 GGCAAGCCCTTCACGTTG 59.355 61.111 0.00 0.00 0.00 4.10
608 712 3.569200 AAAGGACGGAGGGCAAGCC 62.569 63.158 1.52 1.52 0.00 4.35
609 713 2.034221 AAAGGACGGAGGGCAAGC 59.966 61.111 0.00 0.00 0.00 4.01
610 714 0.955919 GTCAAAGGACGGAGGGCAAG 60.956 60.000 0.00 0.00 33.68 4.01
611 715 1.072505 GTCAAAGGACGGAGGGCAA 59.927 57.895 0.00 0.00 33.68 4.52
612 716 2.747686 GTCAAAGGACGGAGGGCA 59.252 61.111 0.00 0.00 33.68 5.36
620 724 1.891060 CTCACGCGCTGTCAAAGGAC 61.891 60.000 5.73 0.00 44.57 3.85
621 725 1.664649 CTCACGCGCTGTCAAAGGA 60.665 57.895 5.73 0.00 0.00 3.36
622 726 2.671177 CCTCACGCGCTGTCAAAGG 61.671 63.158 5.73 7.99 0.00 3.11
623 727 2.671177 CCCTCACGCGCTGTCAAAG 61.671 63.158 5.73 2.90 0.00 2.77
624 728 2.664851 CCCTCACGCGCTGTCAAA 60.665 61.111 5.73 0.00 0.00 2.69
627 731 2.071844 TATAGCCCTCACGCGCTGTC 62.072 60.000 5.73 0.00 36.53 3.51
628 732 2.125326 TATAGCCCTCACGCGCTGT 61.125 57.895 5.73 1.79 36.53 4.40
629 733 1.661821 GTATAGCCCTCACGCGCTG 60.662 63.158 5.73 3.89 36.53 5.18
630 734 1.672854 TTGTATAGCCCTCACGCGCT 61.673 55.000 5.73 0.00 39.17 5.92
631 735 0.600255 ATTGTATAGCCCTCACGCGC 60.600 55.000 5.73 0.00 0.00 6.86
632 736 1.139989 CATTGTATAGCCCTCACGCG 58.860 55.000 3.53 3.53 0.00 6.01
633 737 2.526304 TCATTGTATAGCCCTCACGC 57.474 50.000 0.00 0.00 0.00 5.34
634 738 2.738846 GCATCATTGTATAGCCCTCACG 59.261 50.000 0.00 0.00 0.00 4.35
635 739 2.738846 CGCATCATTGTATAGCCCTCAC 59.261 50.000 0.00 0.00 0.00 3.51
636 740 2.632512 TCGCATCATTGTATAGCCCTCA 59.367 45.455 0.00 0.00 0.00 3.86
637 741 3.319137 TCGCATCATTGTATAGCCCTC 57.681 47.619 0.00 0.00 0.00 4.30
638 742 3.181455 TGTTCGCATCATTGTATAGCCCT 60.181 43.478 0.00 0.00 0.00 5.19
639 743 3.138304 TGTTCGCATCATTGTATAGCCC 58.862 45.455 0.00 0.00 0.00 5.19
652 756 3.581024 ATTGCAACTTGATGTTCGCAT 57.419 38.095 0.00 0.00 41.22 4.73
653 757 4.700268 ATATTGCAACTTGATGTTCGCA 57.300 36.364 0.00 4.94 36.63 5.10
654 758 6.747280 ACTTAATATTGCAACTTGATGTTCGC 59.253 34.615 0.00 0.00 36.63 4.70
655 759 7.962373 TCACTTAATATTGCAACTTGATGTTCG 59.038 33.333 0.00 0.00 36.63 3.95
656 760 9.624697 TTCACTTAATATTGCAACTTGATGTTC 57.375 29.630 0.00 0.00 36.63 3.18
658 762 9.793252 GATTCACTTAATATTGCAACTTGATGT 57.207 29.630 0.00 0.00 0.00 3.06
659 763 9.791820 TGATTCACTTAATATTGCAACTTGATG 57.208 29.630 0.00 0.04 0.00 3.07
687 791 6.183360 TGTTGCTCTACATGTTGGTTGATTTT 60.183 34.615 2.30 0.00 0.00 1.82
692 796 4.539870 CTTGTTGCTCTACATGTTGGTTG 58.460 43.478 2.30 0.00 0.00 3.77
693 797 3.569701 CCTTGTTGCTCTACATGTTGGTT 59.430 43.478 2.30 0.00 0.00 3.67
701 805 2.928801 TTGCTCCTTGTTGCTCTACA 57.071 45.000 0.00 0.00 0.00 2.74
702 806 3.565902 AGTTTTGCTCCTTGTTGCTCTAC 59.434 43.478 0.00 0.00 0.00 2.59
707 811 4.507756 CCTTTAAGTTTTGCTCCTTGTTGC 59.492 41.667 0.00 0.00 0.00 4.17
713 817 6.338146 GTTTCAACCTTTAAGTTTTGCTCCT 58.662 36.000 0.00 0.00 0.00 3.69
714 818 5.522460 GGTTTCAACCTTTAAGTTTTGCTCC 59.478 40.000 1.08 0.00 45.75 4.70
715 819 6.583912 GGTTTCAACCTTTAAGTTTTGCTC 57.416 37.500 1.08 0.00 45.75 4.26
733 1460 2.353030 GCGGCGTTGTGTGGTTTC 60.353 61.111 9.37 0.00 0.00 2.78
738 1465 4.354212 CACTCGCGGCGTTGTGTG 62.354 66.667 28.25 23.60 32.12 3.82
748 1475 2.887568 GGCACAGATCCACTCGCG 60.888 66.667 0.00 0.00 0.00 5.87
751 1478 2.512515 GCGGGCACAGATCCACTC 60.513 66.667 0.00 0.00 0.00 3.51
764 1491 2.493278 AGATCATGGTTTCTTTTGCGGG 59.507 45.455 0.00 0.00 0.00 6.13
786 1513 1.349688 TGGGGGCGGATAATGATGTAC 59.650 52.381 0.00 0.00 0.00 2.90
790 1517 0.112412 GGTTGGGGGCGGATAATGAT 59.888 55.000 0.00 0.00 0.00 2.45
791 1518 1.282653 TGGTTGGGGGCGGATAATGA 61.283 55.000 0.00 0.00 0.00 2.57
795 1530 2.678470 GTTGGTTGGGGGCGGATA 59.322 61.111 0.00 0.00 0.00 2.59
807 1542 1.006102 CGTCTGCTCCTTCGTTGGT 60.006 57.895 0.00 0.00 0.00 3.67
911 1648 5.243426 TGTACAGGCAAAACTTTCAAGTC 57.757 39.130 0.00 0.00 38.57 3.01
945 1682 2.214181 GACGGCTGTCTCGTGGATGT 62.214 60.000 18.76 0.00 42.08 3.06
948 1685 2.596338 TGACGGCTGTCTCGTGGA 60.596 61.111 25.54 1.94 45.70 4.02
949 1686 2.126307 CTGACGGCTGTCTCGTGG 60.126 66.667 25.54 7.78 45.70 4.94
957 1696 3.257933 GCCAAGAACTGACGGCTG 58.742 61.111 0.00 0.00 41.50 4.85
1089 1828 0.099082 GCTTCTCCTCGACTACCACG 59.901 60.000 0.00 0.00 0.00 4.94
1091 1830 1.004394 TCAGCTTCTCCTCGACTACCA 59.996 52.381 0.00 0.00 0.00 3.25
1094 1833 2.302260 CCATCAGCTTCTCCTCGACTA 58.698 52.381 0.00 0.00 0.00 2.59
1095 1834 1.110442 CCATCAGCTTCTCCTCGACT 58.890 55.000 0.00 0.00 0.00 4.18
1229 1971 2.949644 GCCACCATTGGTACTCCATAAC 59.050 50.000 8.31 0.00 45.98 1.89
1233 1975 1.298340 CGCCACCATTGGTACTCCA 59.702 57.895 8.31 0.00 45.98 3.86
1404 2154 1.573108 TGAGGCTTCTGGAACCTAGG 58.427 55.000 7.41 7.41 32.67 3.02
1416 2166 1.002430 TCGAGCTTGTTCATGAGGCTT 59.998 47.619 13.09 0.00 33.13 4.35
1587 2564 3.366440 GTAGTGCTACCTACCGGATTG 57.634 52.381 9.46 0.00 32.80 2.67
1627 2608 3.629398 GCTTGAATTCACCATGGACCTAG 59.371 47.826 21.47 7.62 0.00 3.02
1628 2609 3.266772 AGCTTGAATTCACCATGGACCTA 59.733 43.478 21.47 0.50 0.00 3.08
1629 2610 2.042162 AGCTTGAATTCACCATGGACCT 59.958 45.455 21.47 0.00 0.00 3.85
1630 2611 2.450476 AGCTTGAATTCACCATGGACC 58.550 47.619 21.47 0.94 0.00 4.46
1668 2649 2.492881 TGCAGATGTGGGCTAACAATTG 59.507 45.455 3.24 3.24 32.81 2.32
1692 2673 1.367471 GCAAGTGGCCTGAAAACCC 59.633 57.895 3.32 0.00 36.11 4.11
1746 2728 9.578439 GTCAAGAATTTCCAAATAATGAAGAGG 57.422 33.333 0.00 0.00 0.00 3.69
1761 2743 3.121778 GCAAATGCCGTGTCAAGAATTTC 59.878 43.478 0.00 0.00 34.31 2.17
1764 2746 2.352503 GCAAATGCCGTGTCAAGAAT 57.647 45.000 0.00 0.00 34.31 2.40
1894 2884 2.313234 CATGCAGCAACGAGAAAACAG 58.687 47.619 0.00 0.00 0.00 3.16
1912 2902 8.527241 AACTTATGTTGAATGCATGCTGGCAT 62.527 38.462 20.33 15.31 44.56 4.40
1913 2903 7.303828 AACTTATGTTGAATGCATGCTGGCA 62.304 40.000 20.33 10.83 40.68 4.92
1914 2904 2.875087 TATGTTGAATGCATGCTGGC 57.125 45.000 20.33 8.21 0.00 4.85
1916 2906 5.445407 GCAAACTTATGTTGAATGCATGCTG 60.445 40.000 20.33 3.65 37.38 4.41
1917 2907 4.628333 GCAAACTTATGTTGAATGCATGCT 59.372 37.500 20.33 0.00 37.38 3.79
1953 2962 2.035449 TGCATACGTAGAGGCATACACC 59.965 50.000 13.36 0.00 0.00 4.16
1956 2965 3.253677 AGACTGCATACGTAGAGGCATAC 59.746 47.826 16.51 13.60 35.45 2.39
1957 2966 3.487372 AGACTGCATACGTAGAGGCATA 58.513 45.455 16.51 0.00 35.45 3.14
1958 2967 2.311463 AGACTGCATACGTAGAGGCAT 58.689 47.619 16.51 9.32 35.45 4.40
1968 2983 5.410924 TGTACATGACTGAAGACTGCATAC 58.589 41.667 0.00 0.00 0.00 2.39
1987 3002 5.184864 CCATATCCTCTGGTCTCTCATGTAC 59.815 48.000 0.00 0.00 0.00 2.90
1998 3013 2.123018 TGCATCCCATATCCTCTGGT 57.877 50.000 0.00 0.00 31.44 4.00
2030 3045 1.946768 CGCAAGACCTTTCAGGAACAA 59.053 47.619 0.00 0.00 39.20 2.83
2044 3059 2.082977 ACCTTTTCGGCTTTCGCAAGA 61.083 47.619 0.00 0.00 40.46 3.02
2376 3480 4.381932 GGAAATTCGTCCCTGCAAAATGAT 60.382 41.667 0.00 0.00 0.00 2.45
2406 3511 0.250338 AAGAAAGACCTGACGGTGCC 60.250 55.000 0.00 0.00 45.73 5.01
2496 3602 4.021104 CCAAGGCATCGTAGAGATATTCCA 60.021 45.833 0.00 0.00 43.63 3.53
2557 3663 5.039645 TCTTCTGAACCCCCTAGATGAAAT 58.960 41.667 0.00 0.00 0.00 2.17
2689 3809 5.010516 AGTTATGCATGGTTTAACACAAGCA 59.989 36.000 10.16 14.79 38.48 3.91
2697 3817 4.464597 GGTGGGAAGTTATGCATGGTTTAA 59.535 41.667 10.16 0.00 0.00 1.52
2799 3920 6.636705 TGTCTTGTTTTACCTGATATACGCT 58.363 36.000 0.00 0.00 0.00 5.07
2800 3921 6.897259 TGTCTTGTTTTACCTGATATACGC 57.103 37.500 0.00 0.00 0.00 4.42
2961 4082 0.464013 ATGAGCTGCATCCACTGAGC 60.464 55.000 1.02 0.00 28.85 4.26
3147 5367 2.374184 CTTCTCAGACCTGGAGACGAT 58.626 52.381 0.00 0.00 40.90 3.73
3159 5379 3.374988 CCATTAACATTGCGCTTCTCAGA 59.625 43.478 9.73 0.00 0.00 3.27
3201 5421 3.244735 TGAACATTCCCACCTTCGATTCA 60.245 43.478 0.00 0.00 0.00 2.57
3365 5588 4.211986 GCAAATGCTGCCCATTGG 57.788 55.556 0.00 0.00 46.13 3.16
3397 5620 3.988379 AGCTTCGCAATTGTCTGAAAA 57.012 38.095 7.40 0.00 0.00 2.29
3460 5683 0.179073 CACAAGGATAGGGGCAGTCG 60.179 60.000 0.00 0.00 0.00 4.18
3490 5713 9.403583 ACCTAACTAAATGGTATAATGTTGTGG 57.596 33.333 0.00 0.00 31.50 4.17
3509 5732 2.903926 ACTCAGTGGCCTAACCTAACT 58.096 47.619 3.32 0.00 40.22 2.24
3510 5733 3.261137 AGAACTCAGTGGCCTAACCTAAC 59.739 47.826 3.32 0.00 40.22 2.34
3531 5755 4.271049 CACTCACGAATGCATAAACCCTAG 59.729 45.833 0.00 0.00 0.00 3.02
3547 5771 6.504398 TGTATAGAATTTCTAGCCACTCACG 58.496 40.000 11.56 0.00 31.67 4.35
3591 5815 8.764524 AATTACAAGTGCACAAGTTTTAACAA 57.235 26.923 21.04 7.13 0.00 2.83
3703 5927 1.913262 AGTCTGCACCCATCACCGA 60.913 57.895 0.00 0.00 0.00 4.69
3706 5930 0.322975 AGACAGTCTGCACCCATCAC 59.677 55.000 0.91 0.00 0.00 3.06
3742 5966 2.898705 CAAGCTCTACGGAGAAGCAAT 58.101 47.619 17.70 6.69 41.86 3.56
3842 6072 6.707440 TTCTGATCTCTACCTTGTCTGATC 57.293 41.667 0.00 0.00 0.00 2.92
3992 6885 7.928307 TCCTTTTCTTCTCATGTATCAAAGG 57.072 36.000 13.25 13.25 40.22 3.11
4029 6922 6.721208 ACTCTCAATGAAAGCATCCCTTTTTA 59.279 34.615 0.00 0.00 43.64 1.52
4034 6927 4.015084 CAACTCTCAATGAAAGCATCCCT 58.985 43.478 0.00 0.00 32.35 4.20
4035 6928 4.012374 TCAACTCTCAATGAAAGCATCCC 58.988 43.478 0.00 0.00 32.35 3.85
4036 6929 5.182760 AGTTCAACTCTCAATGAAAGCATCC 59.817 40.000 0.00 0.00 37.31 3.51
4176 7153 8.739039 TCTGTAACATTCTCAATACCAAATTGG 58.261 33.333 11.02 11.02 45.02 3.16
4213 7190 9.340695 CGCATATTAGTTTTGACTTGAATCAAA 57.659 29.630 0.00 0.00 44.80 2.69
4289 7266 2.906354 ACCTACAACTTCCGATGATGC 58.094 47.619 0.00 0.00 0.00 3.91
4298 7275 2.235650 GGTGACCCCTACCTACAACTTC 59.764 54.545 0.00 0.00 35.30 3.01
4336 7329 1.564348 TCAGATTTAGTCCCTTGGCCC 59.436 52.381 0.00 0.00 0.00 5.80
4413 7406 3.004106 ACGTTCGGGAGTTATAGAATCCG 59.996 47.826 0.00 0.00 38.92 4.18
4414 7407 4.037208 TGACGTTCGGGAGTTATAGAATCC 59.963 45.833 0.00 0.00 0.00 3.01
4415 7408 5.179045 TGACGTTCGGGAGTTATAGAATC 57.821 43.478 0.00 0.00 0.00 2.52
4417 7410 3.379372 CCTGACGTTCGGGAGTTATAGAA 59.621 47.826 6.96 0.00 45.95 2.10
4418 7411 2.947652 CCTGACGTTCGGGAGTTATAGA 59.052 50.000 6.96 0.00 45.95 1.98
4419 7412 2.947652 TCCTGACGTTCGGGAGTTATAG 59.052 50.000 10.42 0.00 46.55 1.31
4420 7413 3.003394 TCCTGACGTTCGGGAGTTATA 57.997 47.619 10.42 0.00 46.55 0.98
4423 7416 4.186136 TCCTGACGTTCGGGAGTT 57.814 55.556 10.42 0.00 46.55 3.01
4427 7420 1.664151 GCTAAAATCCTGACGTTCGGG 59.336 52.381 6.54 6.54 44.41 5.14
4428 7421 1.323534 CGCTAAAATCCTGACGTTCGG 59.676 52.381 0.00 0.00 0.00 4.30
4435 8082 3.078837 GGACCAAACGCTAAAATCCTGA 58.921 45.455 0.00 0.00 0.00 3.86
4437 8084 2.443416 GGGACCAAACGCTAAAATCCT 58.557 47.619 0.00 0.00 0.00 3.24
4439 8086 2.078392 TCGGGACCAAACGCTAAAATC 58.922 47.619 0.00 0.00 0.00 2.17
4440 8087 2.188062 TCGGGACCAAACGCTAAAAT 57.812 45.000 0.00 0.00 0.00 1.82
4441 8088 1.603326 GTTCGGGACCAAACGCTAAAA 59.397 47.619 0.00 0.00 0.00 1.52
4448 8095 2.281276 AGGCGTTCGGGACCAAAC 60.281 61.111 0.00 0.00 0.00 2.93
4450 8097 4.367023 CGAGGCGTTCGGGACCAA 62.367 66.667 0.00 0.00 45.54 3.67
4462 8109 3.069980 ATCTGACGGCACTCGAGGC 62.070 63.158 18.41 16.51 42.43 4.70
4467 8114 1.063174 GCAAATCATCTGACGGCACTC 59.937 52.381 0.00 0.00 0.00 3.51
4468 8115 1.089920 GCAAATCATCTGACGGCACT 58.910 50.000 0.00 0.00 0.00 4.40
4469 8116 0.804364 TGCAAATCATCTGACGGCAC 59.196 50.000 0.00 0.00 0.00 5.01
4470 8117 0.804364 GTGCAAATCATCTGACGGCA 59.196 50.000 0.00 0.00 0.00 5.69
4471 8118 0.804364 TGTGCAAATCATCTGACGGC 59.196 50.000 0.00 0.00 0.00 5.68
4473 8120 3.373130 AGATGTGTGCAAATCATCTGACG 59.627 43.478 20.91 0.00 44.08 4.35
4475 8122 6.408869 TCTAAGATGTGTGCAAATCATCTGA 58.591 36.000 21.74 16.51 44.70 3.27
4476 8123 6.673154 TCTAAGATGTGTGCAAATCATCTG 57.327 37.500 21.74 14.31 44.70 2.90
4481 8128 4.201891 CCTGCTCTAAGATGTGTGCAAATC 60.202 45.833 0.00 0.00 33.30 2.17
4482 8129 3.693085 CCTGCTCTAAGATGTGTGCAAAT 59.307 43.478 0.00 0.00 33.30 2.32
4483 8130 3.076621 CCTGCTCTAAGATGTGTGCAAA 58.923 45.455 0.00 0.00 33.30 3.68
4484 8131 2.038952 ACCTGCTCTAAGATGTGTGCAA 59.961 45.455 0.00 0.00 33.30 4.08
4485 8132 1.625315 ACCTGCTCTAAGATGTGTGCA 59.375 47.619 0.00 0.00 0.00 4.57
4486 8133 2.005451 CACCTGCTCTAAGATGTGTGC 58.995 52.381 0.00 0.00 0.00 4.57
4487 8134 3.257393 GTCACCTGCTCTAAGATGTGTG 58.743 50.000 0.00 0.00 0.00 3.82
4488 8135 2.899900 TGTCACCTGCTCTAAGATGTGT 59.100 45.455 0.00 0.00 0.00 3.72
4489 8136 3.056250 AGTGTCACCTGCTCTAAGATGTG 60.056 47.826 0.00 0.00 0.00 3.21
4490 8137 3.056250 CAGTGTCACCTGCTCTAAGATGT 60.056 47.826 0.00 0.00 0.00 3.06
4491 8138 3.519579 CAGTGTCACCTGCTCTAAGATG 58.480 50.000 0.00 0.00 0.00 2.90
4492 8139 3.883830 CAGTGTCACCTGCTCTAAGAT 57.116 47.619 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.