Multiple sequence alignment - TraesCS5D01G417600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G417600 chr5D 100.000 5608 0 0 1 5608 479789715 479784108 0.000000e+00 10357.0
1 TraesCS5D01G417600 chr5D 91.568 676 41 14 4788 5448 486091556 486090882 0.000000e+00 918.0
2 TraesCS5D01G417600 chr5A 92.433 1837 102 17 833 2654 598393203 598391389 0.000000e+00 2588.0
3 TraesCS5D01G417600 chr5A 93.135 1209 62 9 3475 4671 598390441 598389242 0.000000e+00 1753.0
4 TraesCS5D01G417600 chr5A 88.099 689 66 8 2201 2886 353159515 353158840 0.000000e+00 804.0
5 TraesCS5D01G417600 chr5A 95.082 427 9 3 2601 3024 598391395 598390978 0.000000e+00 662.0
6 TraesCS5D01G417600 chr5A 81.034 116 4 10 5505 5603 598389105 598388991 6.020000e-10 76.8
7 TraesCS5D01G417600 chr5B 93.543 1270 64 10 1760 3025 587474507 587473252 0.000000e+00 1875.0
8 TraesCS5D01G417600 chr5B 92.804 1209 60 15 3481 4674 587472706 587471510 0.000000e+00 1725.0
9 TraesCS5D01G417600 chr5B 88.367 894 73 17 1062 1948 587475380 587474511 0.000000e+00 1046.0
10 TraesCS5D01G417600 chr5B 95.792 404 11 5 147 546 587476522 587476121 0.000000e+00 647.0
11 TraesCS5D01G417600 chr5B 92.776 263 8 3 797 1059 587475811 587475560 2.470000e-98 370.0
12 TraesCS5D01G417600 chr5B 85.784 204 18 7 580 775 587476120 587475920 7.360000e-49 206.0
13 TraesCS5D01G417600 chr5B 95.455 44 0 2 5560 5601 587470940 587470897 1.010000e-07 69.4
14 TraesCS5D01G417600 chr4D 97.177 673 13 6 4784 5452 438434003 438434673 0.000000e+00 1133.0
15 TraesCS5D01G417600 chr4D 96.557 668 17 6 4790 5452 495299765 495300431 0.000000e+00 1101.0
16 TraesCS5D01G417600 chr2D 97.151 667 12 6 4786 5447 532161028 532160364 0.000000e+00 1120.0
17 TraesCS5D01G417600 chr6D 96.741 675 14 8 4775 5446 73502989 73502320 0.000000e+00 1118.0
18 TraesCS5D01G417600 chr6D 95.665 669 23 6 4776 5439 344799740 344800407 0.000000e+00 1070.0
19 TraesCS5D01G417600 chr7D 96.861 669 15 6 4780 5443 13509242 13508575 0.000000e+00 1114.0
20 TraesCS5D01G417600 chr7D 96.988 664 14 6 4790 5449 95104329 95103668 0.000000e+00 1110.0
21 TraesCS5D01G417600 chr7D 97.538 650 12 4 4793 5439 112415420 112414772 0.000000e+00 1109.0
22 TraesCS5D01G417600 chr7A 88.679 689 62 11 2201 2886 130081860 130081185 0.000000e+00 826.0
23 TraesCS5D01G417600 chr7A 88.736 364 36 3 2201 2564 261401982 261402340 1.850000e-119 440.0
24 TraesCS5D01G417600 chr1A 88.657 335 30 4 3641 3974 568000357 568000684 8.750000e-108 401.0
25 TraesCS5D01G417600 chr1B 88.824 170 11 6 1 167 619514352 619514516 9.530000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G417600 chr5D 479784108 479789715 5607 True 10357.000000 10357 100.000000 1 5608 1 chr5D.!!$R1 5607
1 TraesCS5D01G417600 chr5D 486090882 486091556 674 True 918.000000 918 91.568000 4788 5448 1 chr5D.!!$R2 660
2 TraesCS5D01G417600 chr5A 598388991 598393203 4212 True 1269.950000 2588 90.421000 833 5603 4 chr5A.!!$R2 4770
3 TraesCS5D01G417600 chr5A 353158840 353159515 675 True 804.000000 804 88.099000 2201 2886 1 chr5A.!!$R1 685
4 TraesCS5D01G417600 chr5B 587470897 587476522 5625 True 848.342857 1875 92.074429 147 5601 7 chr5B.!!$R1 5454
5 TraesCS5D01G417600 chr4D 438434003 438434673 670 False 1133.000000 1133 97.177000 4784 5452 1 chr4D.!!$F1 668
6 TraesCS5D01G417600 chr4D 495299765 495300431 666 False 1101.000000 1101 96.557000 4790 5452 1 chr4D.!!$F2 662
7 TraesCS5D01G417600 chr2D 532160364 532161028 664 True 1120.000000 1120 97.151000 4786 5447 1 chr2D.!!$R1 661
8 TraesCS5D01G417600 chr6D 73502320 73502989 669 True 1118.000000 1118 96.741000 4775 5446 1 chr6D.!!$R1 671
9 TraesCS5D01G417600 chr6D 344799740 344800407 667 False 1070.000000 1070 95.665000 4776 5439 1 chr6D.!!$F1 663
10 TraesCS5D01G417600 chr7D 13508575 13509242 667 True 1114.000000 1114 96.861000 4780 5443 1 chr7D.!!$R1 663
11 TraesCS5D01G417600 chr7D 95103668 95104329 661 True 1110.000000 1110 96.988000 4790 5449 1 chr7D.!!$R2 659
12 TraesCS5D01G417600 chr7D 112414772 112415420 648 True 1109.000000 1109 97.538000 4793 5439 1 chr7D.!!$R3 646
13 TraesCS5D01G417600 chr7A 130081185 130081860 675 True 826.000000 826 88.679000 2201 2886 1 chr7A.!!$R1 685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 421 0.111253 AGTGGCCTCCTTGGTTGAAG 59.889 55.0 3.32 0.0 38.35 3.02 F
1514 1788 0.108615 CTGTTGTTCTCCTCCGCGAT 60.109 55.0 8.23 0.0 0.00 4.58 F
1516 1790 0.108804 GTTGTTCTCCTCCGCGATGA 60.109 55.0 8.23 0.0 0.00 2.92 F
3228 3784 0.391597 TTCGTTGAAAGCCGAGGACT 59.608 50.0 0.00 0.0 34.16 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1703 1985 0.248289 GTTTAGGTAGGGAGCGTGCA 59.752 55.0 0.00 0.00 0.00 4.57 R
3433 4051 0.254178 ATTGAGATGCGGTCTTGCCT 59.746 50.0 0.00 0.00 37.29 4.75 R
3434 4052 1.953559 TATTGAGATGCGGTCTTGCC 58.046 50.0 0.00 0.00 37.29 4.52 R
4683 5621 0.250234 TCTGAGCTCAATGGAACCCG 59.750 55.0 18.85 2.53 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.064573 GCACCACTATGCAAAACCAC 57.935 50.000 0.00 0.00 45.39 4.16
21 22 1.336795 GCACCACTATGCAAAACCACC 60.337 52.381 0.00 0.00 45.39 4.61
22 23 1.959985 CACCACTATGCAAAACCACCA 59.040 47.619 0.00 0.00 0.00 4.17
23 24 2.562298 CACCACTATGCAAAACCACCAT 59.438 45.455 0.00 0.00 0.00 3.55
24 25 2.825532 ACCACTATGCAAAACCACCATC 59.174 45.455 0.00 0.00 0.00 3.51
25 26 2.166254 CCACTATGCAAAACCACCATCC 59.834 50.000 0.00 0.00 0.00 3.51
26 27 2.166254 CACTATGCAAAACCACCATCCC 59.834 50.000 0.00 0.00 0.00 3.85
27 28 2.225242 ACTATGCAAAACCACCATCCCA 60.225 45.455 0.00 0.00 0.00 4.37
28 29 1.955451 ATGCAAAACCACCATCCCAT 58.045 45.000 0.00 0.00 0.00 4.00
29 30 2.612285 TGCAAAACCACCATCCCATA 57.388 45.000 0.00 0.00 0.00 2.74
30 31 2.175202 TGCAAAACCACCATCCCATAC 58.825 47.619 0.00 0.00 0.00 2.39
31 32 2.225242 TGCAAAACCACCATCCCATACT 60.225 45.455 0.00 0.00 0.00 2.12
32 33 2.166254 GCAAAACCACCATCCCATACTG 59.834 50.000 0.00 0.00 0.00 2.74
33 34 2.143876 AAACCACCATCCCATACTGC 57.856 50.000 0.00 0.00 0.00 4.40
34 35 1.298953 AACCACCATCCCATACTGCT 58.701 50.000 0.00 0.00 0.00 4.24
35 36 2.190398 ACCACCATCCCATACTGCTA 57.810 50.000 0.00 0.00 0.00 3.49
36 37 2.487775 ACCACCATCCCATACTGCTAA 58.512 47.619 0.00 0.00 0.00 3.09
37 38 2.849943 ACCACCATCCCATACTGCTAAA 59.150 45.455 0.00 0.00 0.00 1.85
38 39 3.117888 ACCACCATCCCATACTGCTAAAG 60.118 47.826 0.00 0.00 0.00 1.85
39 40 3.117888 CCACCATCCCATACTGCTAAAGT 60.118 47.826 0.00 0.00 43.40 2.66
40 41 3.879295 CACCATCCCATACTGCTAAAGTG 59.121 47.826 0.00 0.00 40.26 3.16
41 42 3.117888 ACCATCCCATACTGCTAAAGTGG 60.118 47.826 0.00 0.00 40.26 4.00
42 43 3.136443 CCATCCCATACTGCTAAAGTGGA 59.864 47.826 0.00 0.00 40.26 4.02
43 44 4.384056 CATCCCATACTGCTAAAGTGGAG 58.616 47.826 0.00 0.00 40.26 3.86
44 45 2.771943 TCCCATACTGCTAAAGTGGAGG 59.228 50.000 0.00 0.00 40.26 4.30
45 46 2.505819 CCCATACTGCTAAAGTGGAGGT 59.494 50.000 0.00 0.00 40.26 3.85
46 47 3.054361 CCCATACTGCTAAAGTGGAGGTT 60.054 47.826 0.00 0.00 40.26 3.50
47 48 3.941483 CCATACTGCTAAAGTGGAGGTTG 59.059 47.826 0.00 0.00 40.26 3.77
48 49 2.568623 ACTGCTAAAGTGGAGGTTGG 57.431 50.000 0.00 0.00 37.88 3.77
49 50 1.073923 ACTGCTAAAGTGGAGGTTGGG 59.926 52.381 0.00 0.00 37.88 4.12
50 51 0.404040 TGCTAAAGTGGAGGTTGGGG 59.596 55.000 0.00 0.00 0.00 4.96
51 52 0.323451 GCTAAAGTGGAGGTTGGGGG 60.323 60.000 0.00 0.00 0.00 5.40
67 68 2.447408 GGGGGTGATTTATCCGGTTT 57.553 50.000 0.00 0.00 0.00 3.27
68 69 2.028876 GGGGGTGATTTATCCGGTTTG 58.971 52.381 0.00 0.00 0.00 2.93
69 70 2.028876 GGGGTGATTTATCCGGTTTGG 58.971 52.381 0.00 0.00 40.09 3.28
70 71 2.028876 GGGTGATTTATCCGGTTTGGG 58.971 52.381 0.00 0.00 38.76 4.12
71 72 2.357361 GGGTGATTTATCCGGTTTGGGA 60.357 50.000 0.00 0.00 41.17 4.37
73 74 4.446600 GGGTGATTTATCCGGTTTGGGATA 60.447 45.833 0.00 0.00 44.97 2.59
74 75 4.760204 GGTGATTTATCCGGTTTGGGATAG 59.240 45.833 0.00 0.00 46.77 2.08
75 76 5.374071 GTGATTTATCCGGTTTGGGATAGT 58.626 41.667 0.00 0.00 46.77 2.12
76 77 5.469084 GTGATTTATCCGGTTTGGGATAGTC 59.531 44.000 0.00 5.64 46.77 2.59
77 78 5.368523 TGATTTATCCGGTTTGGGATAGTCT 59.631 40.000 0.00 0.00 46.77 3.24
78 79 6.555738 TGATTTATCCGGTTTGGGATAGTCTA 59.444 38.462 0.00 0.00 46.77 2.59
79 80 6.415206 TTTATCCGGTTTGGGATAGTCTAG 57.585 41.667 0.00 0.00 46.77 2.43
80 81 2.674420 TCCGGTTTGGGATAGTCTAGG 58.326 52.381 0.00 0.00 38.76 3.02
81 82 1.692519 CCGGTTTGGGATAGTCTAGGG 59.307 57.143 0.00 0.00 0.00 3.53
82 83 1.692519 CGGTTTGGGATAGTCTAGGGG 59.307 57.143 0.00 0.00 0.00 4.79
83 84 2.691850 CGGTTTGGGATAGTCTAGGGGA 60.692 54.545 0.00 0.00 0.00 4.81
84 85 3.599348 GGTTTGGGATAGTCTAGGGGAT 58.401 50.000 0.00 0.00 0.00 3.85
85 86 3.981375 GGTTTGGGATAGTCTAGGGGATT 59.019 47.826 0.00 0.00 0.00 3.01
86 87 5.160386 GGTTTGGGATAGTCTAGGGGATTA 58.840 45.833 0.00 0.00 0.00 1.75
87 88 5.609708 GGTTTGGGATAGTCTAGGGGATTAA 59.390 44.000 0.00 0.00 0.00 1.40
88 89 6.239915 GGTTTGGGATAGTCTAGGGGATTAAG 60.240 46.154 0.00 0.00 0.00 1.85
89 90 5.961399 TGGGATAGTCTAGGGGATTAAGA 57.039 43.478 0.00 0.00 0.00 2.10
90 91 6.303427 TGGGATAGTCTAGGGGATTAAGAA 57.697 41.667 0.00 0.00 0.00 2.52
91 92 6.082707 TGGGATAGTCTAGGGGATTAAGAAC 58.917 44.000 0.00 0.00 0.00 3.01
92 93 5.484644 GGGATAGTCTAGGGGATTAAGAACC 59.515 48.000 0.00 0.00 0.00 3.62
93 94 6.082707 GGATAGTCTAGGGGATTAAGAACCA 58.917 44.000 0.00 0.00 0.00 3.67
94 95 6.731448 GGATAGTCTAGGGGATTAAGAACCAT 59.269 42.308 0.00 0.00 0.00 3.55
95 96 5.896073 AGTCTAGGGGATTAAGAACCATG 57.104 43.478 0.00 0.00 0.00 3.66
96 97 5.289510 AGTCTAGGGGATTAAGAACCATGT 58.710 41.667 0.00 0.00 0.00 3.21
97 98 5.731678 AGTCTAGGGGATTAAGAACCATGTT 59.268 40.000 0.00 0.00 0.00 2.71
98 99 6.217693 AGTCTAGGGGATTAAGAACCATGTTT 59.782 38.462 0.00 0.00 0.00 2.83
99 100 6.890268 GTCTAGGGGATTAAGAACCATGTTTT 59.110 38.462 0.00 0.00 0.00 2.43
100 101 8.050930 GTCTAGGGGATTAAGAACCATGTTTTA 58.949 37.037 0.00 0.00 0.00 1.52
101 102 8.616598 TCTAGGGGATTAAGAACCATGTTTTAA 58.383 33.333 0.00 0.00 0.00 1.52
102 103 9.250246 CTAGGGGATTAAGAACCATGTTTTAAA 57.750 33.333 0.00 0.00 0.00 1.52
103 104 8.134202 AGGGGATTAAGAACCATGTTTTAAAG 57.866 34.615 0.00 0.00 0.00 1.85
104 105 7.733047 AGGGGATTAAGAACCATGTTTTAAAGT 59.267 33.333 0.00 0.00 0.00 2.66
105 106 8.372459 GGGGATTAAGAACCATGTTTTAAAGTT 58.628 33.333 0.00 0.00 0.00 2.66
106 107 9.772973 GGGATTAAGAACCATGTTTTAAAGTTT 57.227 29.630 0.00 0.00 0.00 2.66
123 124 3.723325 TTTTTGGGGGTGGGGGAT 58.277 55.556 0.00 0.00 0.00 3.85
124 125 2.913976 TTTTTGGGGGTGGGGGATA 58.086 52.632 0.00 0.00 0.00 2.59
125 126 1.409569 TTTTTGGGGGTGGGGGATAT 58.590 50.000 0.00 0.00 0.00 1.63
126 127 0.639392 TTTTGGGGGTGGGGGATATG 59.361 55.000 0.00 0.00 0.00 1.78
127 128 0.556380 TTTGGGGGTGGGGGATATGT 60.556 55.000 0.00 0.00 0.00 2.29
128 129 1.292941 TTGGGGGTGGGGGATATGTG 61.293 60.000 0.00 0.00 0.00 3.21
129 130 1.386772 GGGGGTGGGGGATATGTGA 60.387 63.158 0.00 0.00 0.00 3.58
130 131 0.776080 GGGGGTGGGGGATATGTGAT 60.776 60.000 0.00 0.00 0.00 3.06
131 132 0.698818 GGGGTGGGGGATATGTGATC 59.301 60.000 0.00 0.00 0.00 2.92
132 133 0.698818 GGGTGGGGGATATGTGATCC 59.301 60.000 0.00 0.00 37.47 3.36
133 134 1.444933 GGTGGGGGATATGTGATCCA 58.555 55.000 5.96 0.00 39.93 3.41
134 135 1.780309 GGTGGGGGATATGTGATCCAA 59.220 52.381 5.96 0.00 39.93 3.53
135 136 2.176798 GGTGGGGGATATGTGATCCAAA 59.823 50.000 5.96 0.00 39.93 3.28
136 137 3.181418 GGTGGGGGATATGTGATCCAAAT 60.181 47.826 5.96 0.00 39.93 2.32
137 138 3.828451 GTGGGGGATATGTGATCCAAATG 59.172 47.826 5.96 0.00 39.93 2.32
138 139 3.181419 TGGGGGATATGTGATCCAAATGG 60.181 47.826 5.96 0.00 39.93 3.16
139 140 3.434309 GGGGATATGTGATCCAAATGGG 58.566 50.000 5.96 0.00 39.93 4.00
207 208 4.582869 CCATGACAACCATCAGAAGAGAA 58.417 43.478 0.00 0.00 31.94 2.87
244 245 3.415380 ACGACAATGTGCGTGCAA 58.585 50.000 9.35 0.00 39.56 4.08
261 262 3.670055 GTGCAAATGGAAGTTGTCATTCG 59.330 43.478 0.00 0.00 45.01 3.34
330 331 2.104111 TCAACTCATGAAACAGACGGGT 59.896 45.455 0.00 0.00 34.30 5.28
404 407 1.344942 CGAGTTGTGTCGCTAGTGGC 61.345 60.000 0.00 0.00 32.22 5.01
418 421 0.111253 AGTGGCCTCCTTGGTTGAAG 59.889 55.000 3.32 0.00 38.35 3.02
526 530 9.539825 AGAATAATCTTGCACTACACTTCATAG 57.460 33.333 0.00 0.00 29.15 2.23
527 531 9.534565 GAATAATCTTGCACTACACTTCATAGA 57.465 33.333 0.00 0.00 0.00 1.98
554 558 9.889128 AAAAATATCATTGGGTTCACCTATTTG 57.111 29.630 0.00 0.00 41.11 2.32
555 559 7.601705 AATATCATTGGGTTCACCTATTTGG 57.398 36.000 0.00 0.00 41.11 3.28
556 560 4.666412 TCATTGGGTTCACCTATTTGGA 57.334 40.909 0.00 0.00 41.11 3.53
557 561 4.599041 TCATTGGGTTCACCTATTTGGAG 58.401 43.478 0.00 0.00 41.11 3.86
558 562 4.290985 TCATTGGGTTCACCTATTTGGAGA 59.709 41.667 0.00 0.00 41.11 3.71
559 563 4.733077 TTGGGTTCACCTATTTGGAGAA 57.267 40.909 0.00 0.00 41.90 2.87
560 564 4.733077 TGGGTTCACCTATTTGGAGAAA 57.267 40.909 0.00 0.00 44.77 2.52
561 565 5.269554 TGGGTTCACCTATTTGGAGAAAT 57.730 39.130 0.00 0.00 44.77 2.17
562 566 5.650283 TGGGTTCACCTATTTGGAGAAATT 58.350 37.500 0.00 0.00 44.77 1.82
563 567 6.795590 TGGGTTCACCTATTTGGAGAAATTA 58.204 36.000 0.00 0.00 44.77 1.40
564 568 7.242359 TGGGTTCACCTATTTGGAGAAATTAA 58.758 34.615 0.00 0.00 44.77 1.40
565 569 7.898636 TGGGTTCACCTATTTGGAGAAATTAAT 59.101 33.333 0.00 0.00 44.77 1.40
566 570 8.414003 GGGTTCACCTATTTGGAGAAATTAATC 58.586 37.037 0.00 0.00 44.77 1.75
567 571 8.414003 GGTTCACCTATTTGGAGAAATTAATCC 58.586 37.037 0.00 2.53 44.77 3.01
568 572 9.190317 GTTCACCTATTTGGAGAAATTAATCCT 57.810 33.333 9.58 0.00 44.77 3.24
569 573 9.768215 TTCACCTATTTGGAGAAATTAATCCTT 57.232 29.630 9.58 0.00 41.35 3.36
570 574 9.189156 TCACCTATTTGGAGAAATTAATCCTTG 57.811 33.333 9.58 0.00 39.71 3.61
571 575 8.971073 CACCTATTTGGAGAAATTAATCCTTGT 58.029 33.333 9.58 0.44 39.71 3.16
572 576 9.547279 ACCTATTTGGAGAAATTAATCCTTGTT 57.453 29.630 9.58 0.00 39.71 2.83
584 588 8.532977 AATTAATCCTTGTTTGTATGTGCAAC 57.467 30.769 0.00 0.00 37.35 4.17
587 591 3.002862 TCCTTGTTTGTATGTGCAACGAC 59.997 43.478 0.00 0.00 42.39 4.34
636 640 2.217750 AGCATGACGCCGCAATTATTA 58.782 42.857 0.00 0.00 44.04 0.98
637 641 2.813754 AGCATGACGCCGCAATTATTAT 59.186 40.909 0.00 0.00 44.04 1.28
643 647 5.885881 TGACGCCGCAATTATTATTTTTCT 58.114 33.333 0.00 0.00 0.00 2.52
644 648 7.017498 TGACGCCGCAATTATTATTTTTCTA 57.983 32.000 0.00 0.00 0.00 2.10
645 649 7.644490 TGACGCCGCAATTATTATTTTTCTAT 58.356 30.769 0.00 0.00 0.00 1.98
646 650 7.589587 TGACGCCGCAATTATTATTTTTCTATG 59.410 33.333 0.00 0.00 0.00 2.23
647 651 7.422399 ACGCCGCAATTATTATTTTTCTATGT 58.578 30.769 0.00 0.00 0.00 2.29
664 668 3.898005 ATGTTTTGCGTTTTTCACACG 57.102 38.095 0.00 0.00 40.75 4.49
673 677 5.566623 TGCGTTTTTCACACGTACATTTAA 58.433 33.333 0.00 0.00 39.92 1.52
675 679 6.691818 TGCGTTTTTCACACGTACATTTAAAT 59.308 30.769 0.00 0.00 39.92 1.40
676 680 7.096966 TGCGTTTTTCACACGTACATTTAAATC 60.097 33.333 0.00 0.00 39.92 2.17
677 681 7.415362 CGTTTTTCACACGTACATTTAAATCG 58.585 34.615 0.00 2.06 32.80 3.34
678 682 7.110490 CGTTTTTCACACGTACATTTAAATCGT 59.890 33.333 7.40 7.40 32.80 3.73
679 683 8.735837 GTTTTTCACACGTACATTTAAATCGTT 58.264 29.630 9.86 2.04 32.47 3.85
680 684 7.824100 TTTCACACGTACATTTAAATCGTTG 57.176 32.000 9.86 11.13 32.47 4.10
695 706 1.819903 TCGTTGTCATATCCCGTGTCA 59.180 47.619 0.00 0.00 0.00 3.58
715 726 2.423185 CAGTTTGACAAGTGGCAGTTCA 59.577 45.455 4.17 0.00 32.66 3.18
747 758 4.096382 CCAATAACCCATTTTCCAGACTCG 59.904 45.833 0.00 0.00 0.00 4.18
748 759 4.837093 ATAACCCATTTTCCAGACTCGA 57.163 40.909 0.00 0.00 0.00 4.04
762 773 0.881796 ACTCGATCTTCACACTCGCA 59.118 50.000 0.00 0.00 32.62 5.10
795 824 0.594796 GTTGCAAAGCCGGTTCACTG 60.595 55.000 0.00 0.00 0.00 3.66
827 924 1.670083 CGAAGTCCCCAACGAACCC 60.670 63.158 0.00 0.00 0.00 4.11
991 1088 2.989253 CCCCGCAACCCTCCAAAC 60.989 66.667 0.00 0.00 0.00 2.93
992 1089 2.989253 CCCGCAACCCTCCAAACC 60.989 66.667 0.00 0.00 0.00 3.27
993 1090 2.203422 CCGCAACCCTCCAAACCA 60.203 61.111 0.00 0.00 0.00 3.67
994 1091 1.830408 CCGCAACCCTCCAAACCAA 60.830 57.895 0.00 0.00 0.00 3.67
995 1092 1.395826 CCGCAACCCTCCAAACCAAA 61.396 55.000 0.00 0.00 0.00 3.28
1036 1133 2.441348 CACCCATAAACCCCCGCC 60.441 66.667 0.00 0.00 0.00 6.13
1232 1506 0.452585 GGTAGAGAGCCGTGTCTGAC 59.547 60.000 0.00 0.00 0.00 3.51
1480 1754 4.690719 CCAGCGCCGTGGTAACCA 62.691 66.667 2.29 0.00 32.32 3.67
1490 1764 4.707791 GGTAACCAACCCGACCTG 57.292 61.111 0.00 0.00 43.16 4.00
1502 1776 1.066143 CCCGACCTGCTATCTGTTGTT 60.066 52.381 0.00 0.00 0.00 2.83
1507 1781 3.177228 ACCTGCTATCTGTTGTTCTCCT 58.823 45.455 0.00 0.00 0.00 3.69
1508 1782 3.196685 ACCTGCTATCTGTTGTTCTCCTC 59.803 47.826 0.00 0.00 0.00 3.71
1509 1783 3.431486 CCTGCTATCTGTTGTTCTCCTCC 60.431 52.174 0.00 0.00 0.00 4.30
1510 1784 2.166459 TGCTATCTGTTGTTCTCCTCCG 59.834 50.000 0.00 0.00 0.00 4.63
1511 1785 2.815478 CTATCTGTTGTTCTCCTCCGC 58.185 52.381 0.00 0.00 0.00 5.54
1514 1788 0.108615 CTGTTGTTCTCCTCCGCGAT 60.109 55.000 8.23 0.00 0.00 4.58
1515 1789 0.389817 TGTTGTTCTCCTCCGCGATG 60.390 55.000 8.23 0.00 0.00 3.84
1516 1790 0.108804 GTTGTTCTCCTCCGCGATGA 60.109 55.000 8.23 0.00 0.00 2.92
1517 1791 0.824109 TTGTTCTCCTCCGCGATGAT 59.176 50.000 8.23 0.00 0.00 2.45
1518 1792 0.824109 TGTTCTCCTCCGCGATGATT 59.176 50.000 8.23 0.00 0.00 2.57
1519 1793 1.202417 TGTTCTCCTCCGCGATGATTC 60.202 52.381 8.23 0.00 0.00 2.52
1520 1794 1.111277 TTCTCCTCCGCGATGATTCA 58.889 50.000 8.23 0.00 0.00 2.57
1521 1795 1.332195 TCTCCTCCGCGATGATTCAT 58.668 50.000 8.23 0.00 0.00 2.57
1558 1832 3.059044 CGGACGTTATGCGCTAATCATAC 59.941 47.826 9.73 0.00 46.11 2.39
1559 1833 4.235360 GGACGTTATGCGCTAATCATACT 58.765 43.478 9.73 0.00 46.11 2.12
1576 1850 4.829492 TCATACTGTGATGTCGATCAGGAT 59.171 41.667 0.00 0.00 39.36 3.24
1701 1983 3.819337 GGGGATTCTTATTCTTAACCGCC 59.181 47.826 0.00 0.00 0.00 6.13
1703 1985 4.445879 GGGATTCTTATTCTTAACCGCCCT 60.446 45.833 0.00 0.00 0.00 5.19
1766 2048 0.959372 CAGGTTCAGCAGCCTGGAAG 60.959 60.000 0.00 0.00 46.27 3.46
1769 2051 1.601759 TTCAGCAGCCTGGAAGTGC 60.602 57.895 0.00 2.66 39.61 4.40
1789 2071 5.370880 AGTGCTAGATAATGACCTCCCAATT 59.629 40.000 0.00 0.00 0.00 2.32
1831 2295 2.730090 GCACCAGCAATTTGACATCTCG 60.730 50.000 0.00 0.00 41.58 4.04
1843 2307 7.813852 ATTTGACATCTCGTACTTTACTGAC 57.186 36.000 0.00 0.00 0.00 3.51
1849 2313 7.085116 ACATCTCGTACTTTACTGACTTCTTG 58.915 38.462 0.00 0.00 0.00 3.02
1856 2320 4.034048 ACTTTACTGACTTCTTGTTGTGCG 59.966 41.667 0.00 0.00 0.00 5.34
1857 2321 1.299541 ACTGACTTCTTGTTGTGCGG 58.700 50.000 0.00 0.00 0.00 5.69
1860 2324 2.869801 CTGACTTCTTGTTGTGCGGTTA 59.130 45.455 0.00 0.00 0.00 2.85
1914 2378 6.599244 GCCTTGACAATAGCATGCCTTATATA 59.401 38.462 15.66 0.00 0.00 0.86
1928 2392 9.778741 CATGCCTTATATAGAAAAGAAGTACCA 57.221 33.333 0.00 0.00 0.00 3.25
2024 2488 7.542130 CCAAGCTTTGTTATTGTCTTATTGACC 59.458 37.037 0.00 0.00 44.75 4.02
2065 2530 2.690497 TGACGGGAAGCATTTTCACAAA 59.310 40.909 0.00 0.00 0.00 2.83
2132 2597 3.706698 TGTCTCGTGTCTCTGAAGTTTG 58.293 45.455 0.00 0.00 0.00 2.93
2135 2600 3.380320 TCTCGTGTCTCTGAAGTTTGTGA 59.620 43.478 0.00 0.00 0.00 3.58
2136 2601 3.444916 TCGTGTCTCTGAAGTTTGTGAC 58.555 45.455 0.00 0.00 0.00 3.67
2137 2602 3.119280 TCGTGTCTCTGAAGTTTGTGACA 60.119 43.478 9.25 9.25 35.31 3.58
2147 2613 4.697828 TGAAGTTTGTGACACAGCTAACAA 59.302 37.500 18.95 4.63 0.00 2.83
2158 2626 4.692625 ACACAGCTAACAATTGCAGTCTAG 59.307 41.667 5.05 0.66 0.00 2.43
2165 2633 9.014297 AGCTAACAATTGCAGTCTAGTATTTTT 57.986 29.630 5.05 0.00 0.00 1.94
2219 2687 8.996651 TCTGTCTTTGACCATAGATACTGATA 57.003 34.615 0.00 0.00 0.00 2.15
2220 2688 9.421399 TCTGTCTTTGACCATAGATACTGATAA 57.579 33.333 0.00 0.00 0.00 1.75
2597 3065 5.825151 AGCCTAAGGAAACTATCTTGAATGC 59.175 40.000 0.00 0.00 42.68 3.56
2643 3157 2.780065 TGCATGCTCAAGTTCAACAC 57.220 45.000 20.33 0.00 0.00 3.32
2839 3356 6.222389 TGTTGTTGTCATCAAATTGGGAATC 58.778 36.000 0.00 0.00 35.20 2.52
2886 3403 8.659925 AAATCTCTAGCTTGTATGAACATCAG 57.340 34.615 0.00 0.00 34.97 2.90
2889 3406 7.615403 TCTCTAGCTTGTATGAACATCAGTTT 58.385 34.615 0.00 0.00 38.30 2.66
3020 3537 5.220931 GGAGGTATGATGCTGTTCACATTTC 60.221 44.000 0.00 0.00 0.00 2.17
3021 3538 5.255687 AGGTATGATGCTGTTCACATTTCA 58.744 37.500 0.00 0.00 0.00 2.69
3022 3539 5.356190 AGGTATGATGCTGTTCACATTTCAG 59.644 40.000 0.00 0.00 0.00 3.02
3024 3541 5.717078 ATGATGCTGTTCACATTTCAGTT 57.283 34.783 0.00 0.00 0.00 3.16
3025 3542 5.518848 TGATGCTGTTCACATTTCAGTTT 57.481 34.783 0.00 0.00 0.00 2.66
3027 3544 5.749588 TGATGCTGTTCACATTTCAGTTTTG 59.250 36.000 0.00 0.00 0.00 2.44
3028 3545 5.070770 TGCTGTTCACATTTCAGTTTTGT 57.929 34.783 0.00 0.00 0.00 2.83
3029 3546 5.477510 TGCTGTTCACATTTCAGTTTTGTT 58.522 33.333 0.00 0.00 0.00 2.83
3030 3547 5.576384 TGCTGTTCACATTTCAGTTTTGTTC 59.424 36.000 0.00 0.00 0.00 3.18
3031 3548 5.576384 GCTGTTCACATTTCAGTTTTGTTCA 59.424 36.000 0.00 0.00 0.00 3.18
3032 3549 6.090628 GCTGTTCACATTTCAGTTTTGTTCAA 59.909 34.615 0.00 0.00 0.00 2.69
3034 3551 6.925718 TGTTCACATTTCAGTTTTGTTCAACA 59.074 30.769 0.00 0.00 0.00 3.33
3049 3603 3.853831 TCAACACTGGCTATGCATTTG 57.146 42.857 3.54 0.27 0.00 2.32
3053 3607 3.156293 ACACTGGCTATGCATTTGTGAA 58.844 40.909 3.54 0.00 0.00 3.18
3059 3613 5.353111 TGGCTATGCATTTGTGAATGATTG 58.647 37.500 3.54 0.00 44.37 2.67
3067 3621 9.961265 ATGCATTTGTGAATGATTGTTAGATAG 57.039 29.630 0.00 0.00 44.37 2.08
3083 3637 7.717568 TGTTAGATAGTAGACAGATCAAAGGC 58.282 38.462 0.00 0.00 0.00 4.35
3085 3639 6.155475 AGATAGTAGACAGATCAAAGGCAC 57.845 41.667 0.00 0.00 0.00 5.01
3086 3640 5.658634 AGATAGTAGACAGATCAAAGGCACA 59.341 40.000 0.00 0.00 0.00 4.57
3087 3641 4.199432 AGTAGACAGATCAAAGGCACAG 57.801 45.455 0.00 0.00 0.00 3.66
3088 3642 1.818642 AGACAGATCAAAGGCACAGC 58.181 50.000 0.00 0.00 0.00 4.40
3089 3643 1.350351 AGACAGATCAAAGGCACAGCT 59.650 47.619 0.00 0.00 0.00 4.24
3090 3644 2.568956 AGACAGATCAAAGGCACAGCTA 59.431 45.455 0.00 0.00 0.00 3.32
3091 3645 3.008375 AGACAGATCAAAGGCACAGCTAA 59.992 43.478 0.00 0.00 0.00 3.09
3092 3646 3.944015 GACAGATCAAAGGCACAGCTAAT 59.056 43.478 0.00 0.00 0.00 1.73
3093 3647 4.338879 ACAGATCAAAGGCACAGCTAATT 58.661 39.130 0.00 0.00 0.00 1.40
3094 3648 4.768968 ACAGATCAAAGGCACAGCTAATTT 59.231 37.500 0.00 0.00 0.00 1.82
3095 3649 5.945784 ACAGATCAAAGGCACAGCTAATTTA 59.054 36.000 0.00 0.00 0.00 1.40
3096 3650 6.127897 ACAGATCAAAGGCACAGCTAATTTAC 60.128 38.462 0.00 0.00 0.00 2.01
3097 3651 5.945784 AGATCAAAGGCACAGCTAATTTACA 59.054 36.000 0.00 0.00 0.00 2.41
3098 3652 6.434028 AGATCAAAGGCACAGCTAATTTACAA 59.566 34.615 0.00 0.00 0.00 2.41
3099 3653 6.588719 TCAAAGGCACAGCTAATTTACAAT 57.411 33.333 0.00 0.00 0.00 2.71
3100 3654 6.991938 TCAAAGGCACAGCTAATTTACAATT 58.008 32.000 0.00 0.00 0.00 2.32
3101 3655 7.090173 TCAAAGGCACAGCTAATTTACAATTC 58.910 34.615 0.00 0.00 0.00 2.17
3102 3656 6.588719 AAGGCACAGCTAATTTACAATTCA 57.411 33.333 0.00 0.00 0.00 2.57
3103 3657 5.954335 AGGCACAGCTAATTTACAATTCAC 58.046 37.500 0.00 0.00 0.00 3.18
3104 3658 5.476599 AGGCACAGCTAATTTACAATTCACA 59.523 36.000 0.00 0.00 0.00 3.58
3105 3659 6.015519 AGGCACAGCTAATTTACAATTCACAA 60.016 34.615 0.00 0.00 0.00 3.33
3106 3660 6.644592 GGCACAGCTAATTTACAATTCACAAA 59.355 34.615 0.00 0.00 0.00 2.83
3107 3661 7.331687 GGCACAGCTAATTTACAATTCACAAAT 59.668 33.333 0.00 0.00 0.00 2.32
3108 3662 8.375465 GCACAGCTAATTTACAATTCACAAATC 58.625 33.333 0.00 0.00 0.00 2.17
3109 3663 8.863049 CACAGCTAATTTACAATTCACAAATCC 58.137 33.333 0.00 0.00 0.00 3.01
3110 3664 8.806146 ACAGCTAATTTACAATTCACAAATCCT 58.194 29.630 0.00 0.00 0.00 3.24
3111 3665 9.079833 CAGCTAATTTACAATTCACAAATCCTG 57.920 33.333 0.00 0.00 0.00 3.86
3112 3666 7.761249 AGCTAATTTACAATTCACAAATCCTGC 59.239 33.333 0.00 0.00 0.00 4.85
3113 3667 7.545265 GCTAATTTACAATTCACAAATCCTGCA 59.455 33.333 0.00 0.00 0.00 4.41
3114 3668 7.894376 AATTTACAATTCACAAATCCTGCAG 57.106 32.000 6.78 6.78 0.00 4.41
3115 3669 6.647334 TTTACAATTCACAAATCCTGCAGA 57.353 33.333 17.39 1.21 0.00 4.26
3116 3670 6.647334 TTACAATTCACAAATCCTGCAGAA 57.353 33.333 17.39 0.00 0.00 3.02
3117 3671 5.130292 ACAATTCACAAATCCTGCAGAAG 57.870 39.130 17.39 0.00 0.00 2.85
3118 3672 3.863142 ATTCACAAATCCTGCAGAAGC 57.137 42.857 17.39 0.00 42.57 3.86
3119 3673 1.159285 TCACAAATCCTGCAGAAGCG 58.841 50.000 17.39 0.00 46.23 4.68
3122 3676 2.938451 CACAAATCCTGCAGAAGCGATA 59.062 45.455 17.39 0.00 46.23 2.92
3124 3678 4.036027 CACAAATCCTGCAGAAGCGATATT 59.964 41.667 17.39 4.23 46.23 1.28
3125 3679 4.036027 ACAAATCCTGCAGAAGCGATATTG 59.964 41.667 17.39 16.02 46.23 1.90
3129 3683 4.009675 TCCTGCAGAAGCGATATTGTTTT 58.990 39.130 17.39 0.00 46.23 2.43
3130 3684 4.100529 CCTGCAGAAGCGATATTGTTTTG 58.899 43.478 17.39 0.00 46.23 2.44
3131 3685 4.379813 CCTGCAGAAGCGATATTGTTTTGT 60.380 41.667 17.39 0.00 46.23 2.83
3135 3689 4.079253 AGAAGCGATATTGTTTTGTGGGT 58.921 39.130 0.00 0.00 0.00 4.51
3142 3696 8.691797 AGCGATATTGTTTTGTGGGTAATATTT 58.308 29.630 0.00 0.00 0.00 1.40
3143 3697 8.964150 GCGATATTGTTTTGTGGGTAATATTTC 58.036 33.333 0.00 0.00 0.00 2.17
3155 3709 4.464597 GGGTAATATTTCAGTGCAAACCCA 59.535 41.667 10.98 0.00 42.94 4.51
3156 3710 5.128663 GGGTAATATTTCAGTGCAAACCCAT 59.871 40.000 10.98 0.00 42.94 4.00
3157 3711 6.273071 GGTAATATTTCAGTGCAAACCCATC 58.727 40.000 0.00 0.00 0.00 3.51
3158 3712 5.999205 AATATTTCAGTGCAAACCCATCA 57.001 34.783 0.00 0.00 0.00 3.07
3160 3716 4.895668 ATTTCAGTGCAAACCCATCATT 57.104 36.364 0.00 0.00 0.00 2.57
3166 3722 5.479724 TCAGTGCAAACCCATCATTTAATGA 59.520 36.000 10.23 10.23 44.55 2.57
3228 3784 0.391597 TTCGTTGAAAGCCGAGGACT 59.608 50.000 0.00 0.00 34.16 3.85
3233 3789 2.357517 AAAGCCGAGGACTGTGCG 60.358 61.111 0.00 0.00 0.00 5.34
3236 3792 1.605058 AAGCCGAGGACTGTGCGTAT 61.605 55.000 0.00 0.00 0.00 3.06
3240 3796 1.533338 CCGAGGACTGTGCGTATGTAC 60.533 57.143 0.00 0.00 0.00 2.90
3259 3815 2.275466 ACATAGGTAGTTGCTGGGGTT 58.725 47.619 0.00 0.00 0.00 4.11
3264 3820 1.282157 GGTAGTTGCTGGGGTTCTCAT 59.718 52.381 0.00 0.00 0.00 2.90
3287 3843 7.819415 TCATGATTACAGTCCAGAGTTAACAAG 59.181 37.037 8.61 0.00 0.00 3.16
3290 3846 3.467803 ACAGTCCAGAGTTAACAAGTGC 58.532 45.455 8.61 0.00 0.00 4.40
3291 3847 3.134804 ACAGTCCAGAGTTAACAAGTGCT 59.865 43.478 8.61 0.00 0.00 4.40
3295 3851 4.816925 GTCCAGAGTTAACAAGTGCTTCTT 59.183 41.667 8.61 0.00 36.75 2.52
3314 3870 7.200455 GCTTCTTAGCAAAAACAAAAGTAGGA 58.800 34.615 0.00 0.00 46.95 2.94
3337 3907 5.443283 ACATCCAATCATACAGCTCAATGT 58.557 37.500 5.04 0.00 37.19 2.71
3338 3908 5.889853 ACATCCAATCATACAGCTCAATGTT 59.110 36.000 5.04 0.00 34.56 2.71
3339 3909 7.056006 ACATCCAATCATACAGCTCAATGTTA 58.944 34.615 5.04 0.00 34.56 2.41
3342 3912 9.970553 ATCCAATCATACAGCTCAATGTTATAT 57.029 29.630 5.04 0.00 34.56 0.86
3388 3958 2.988010 TGTCCTCATGTAGCCATGTC 57.012 50.000 3.32 0.00 46.99 3.06
3420 3990 2.231716 TCTAGTCCTGCAGTAAGCCA 57.768 50.000 13.81 0.00 44.83 4.75
3428 4046 2.287788 CCTGCAGTAAGCCAACAAAGTG 60.288 50.000 13.81 0.00 44.83 3.16
3433 4051 3.066621 CAGTAAGCCAACAAAGTGCAGAA 59.933 43.478 0.00 0.00 0.00 3.02
3434 4052 2.877043 AAGCCAACAAAGTGCAGAAG 57.123 45.000 0.00 0.00 0.00 2.85
3451 4069 0.036732 AAGGCAAGACCGCATCTCAA 59.963 50.000 0.00 0.00 46.52 3.02
3453 4071 1.486310 AGGCAAGACCGCATCTCAATA 59.514 47.619 0.00 0.00 46.52 1.90
3479 4097 8.547967 TGTTTTCTGAAGTAGAATCGCTTAAT 57.452 30.769 0.00 0.00 44.54 1.40
3566 4214 8.663209 AGTGATATTCTATGAGCTACCAGATT 57.337 34.615 0.00 0.00 0.00 2.40
3579 4227 7.124901 TGAGCTACCAGATTCATATCCTTATCC 59.875 40.741 0.00 0.00 0.00 2.59
3581 4229 7.626890 AGCTACCAGATTCATATCCTTATCCAT 59.373 37.037 0.00 0.00 0.00 3.41
3600 4248 2.113860 TGCCCTCTGTGAATTAGTGC 57.886 50.000 0.00 0.00 0.00 4.40
3602 4250 2.012673 GCCCTCTGTGAATTAGTGCTG 58.987 52.381 0.00 0.00 0.00 4.41
3606 4254 4.323485 CCCTCTGTGAATTAGTGCTGGTAA 60.323 45.833 0.00 0.00 0.00 2.85
3649 4297 4.584638 AATAGACCCAATTACCAGCACA 57.415 40.909 0.00 0.00 0.00 4.57
3665 4313 6.344500 ACCAGCACAGATAGTAGATTTTGAG 58.656 40.000 0.00 0.00 0.00 3.02
3705 4353 9.895138 TTTAGGAAGTGTAATACAAACCCTATC 57.105 33.333 13.10 2.10 30.26 2.08
3715 4363 3.951663 ACAAACCCTATCAGGTAAGCAC 58.048 45.455 0.00 0.00 40.05 4.40
3740 4388 5.931441 ATGAAGTTTCTGCAGTACTCAAC 57.069 39.130 19.53 13.14 0.00 3.18
3754 4402 3.132629 ACTCAACGATGTAGTACTGCG 57.867 47.619 5.39 11.90 0.00 5.18
3791 4439 8.250143 AGTTTCATATCCTTTTGGTTTTCTGT 57.750 30.769 0.00 0.00 41.38 3.41
3792 4440 9.362151 AGTTTCATATCCTTTTGGTTTTCTGTA 57.638 29.630 0.00 0.00 41.38 2.74
3797 4445 6.840780 ATCCTTTTGGTTTTCTGTATCTGG 57.159 37.500 0.00 0.00 41.38 3.86
3803 4451 5.102953 TGGTTTTCTGTATCTGGATCTGG 57.897 43.478 0.00 0.00 0.00 3.86
3810 4458 4.651503 TCTGTATCTGGATCTGGAACTTCC 59.348 45.833 0.20 0.20 36.96 3.46
3824 4472 3.644966 AACTTCCACAGTTCCAGTTCA 57.355 42.857 0.00 0.00 42.62 3.18
3825 4473 3.199880 ACTTCCACAGTTCCAGTTCAG 57.800 47.619 0.00 0.00 27.32 3.02
3840 4490 9.366216 GTTCCAGTTCAGTTTTATTTTCTGTTT 57.634 29.630 0.00 0.00 0.00 2.83
3861 4511 8.472007 TGTTTACCATTTGAGTTTAACATCCT 57.528 30.769 0.00 0.00 0.00 3.24
3873 4523 9.793259 TGAGTTTAACATCCTCTTTTCACTTAT 57.207 29.630 0.00 0.00 0.00 1.73
3923 4573 3.568007 TGCAACTTTGTCAATGGTAGGTC 59.432 43.478 3.74 0.00 0.00 3.85
4109 4759 5.163540 GGTATCGTTTAGTCACACCAGATCT 60.164 44.000 0.00 0.00 0.00 2.75
4139 4790 1.081892 CCTTCACAGCACCGAATCTG 58.918 55.000 0.00 0.00 36.45 2.90
4145 4796 2.543012 CACAGCACCGAATCTGATGATC 59.457 50.000 0.00 0.00 34.57 2.92
4146 4797 1.791204 CAGCACCGAATCTGATGATCG 59.209 52.381 5.06 5.06 32.26 3.69
4154 4806 4.060900 CGAATCTGATGATCGTTCCCATT 58.939 43.478 4.07 0.00 31.51 3.16
4213 4865 0.886563 CGAAGGTGAGGTTAGGTCGT 59.113 55.000 0.00 0.00 0.00 4.34
4225 4877 3.998672 GGTCGTGGTGGAGCCGAA 61.999 66.667 0.00 0.00 41.21 4.30
4267 4919 5.591877 GCCATTGAATGACTTTGAGAGGTAT 59.408 40.000 6.76 0.00 0.00 2.73
4268 4920 6.767902 GCCATTGAATGACTTTGAGAGGTATA 59.232 38.462 6.76 0.00 0.00 1.47
4269 4921 7.254932 GCCATTGAATGACTTTGAGAGGTATAC 60.255 40.741 6.76 0.00 0.00 1.47
4320 4973 3.622612 CCATACAATCATCACAAGCGTCA 59.377 43.478 0.00 0.00 0.00 4.35
4353 5006 3.347216 AGTAATCGCTTTGCCTGATGTT 58.653 40.909 0.00 0.00 0.00 2.71
4363 5016 0.389426 GCCTGATGTTTGCTTGCAGG 60.389 55.000 0.00 0.00 46.82 4.85
4677 5615 2.040278 ACAGCCTCAGGACATGCTTTTA 59.960 45.455 0.00 0.00 30.08 1.52
4680 5618 2.019984 CCTCAGGACATGCTTTTAGCC 58.980 52.381 0.00 0.00 41.51 3.93
4683 5621 1.474077 CAGGACATGCTTTTAGCCACC 59.526 52.381 0.00 0.00 41.51 4.61
4687 5625 0.965363 CATGCTTTTAGCCACCGGGT 60.965 55.000 6.32 0.00 41.51 5.28
4698 5636 1.002134 CACCGGGTTCCATTGAGCT 60.002 57.895 6.32 0.00 0.00 4.09
4738 5676 9.659830 AACTACAAATGAAAATCGAAGTTACAC 57.340 29.630 0.00 0.00 0.00 2.90
4742 5680 9.528018 ACAAATGAAAATCGAAGTTACACAATT 57.472 25.926 0.00 0.00 0.00 2.32
4748 5686 9.233232 GAAAATCGAAGTTACACAATTTTCTGT 57.767 29.630 9.82 0.00 38.83 3.41
4754 5692 7.530861 CGAAGTTACACAATTTTCTGTAAGCTC 59.469 37.037 0.00 2.09 34.32 4.09
4755 5693 7.801716 AGTTACACAATTTTCTGTAAGCTCA 57.198 32.000 0.00 0.00 34.32 4.26
4768 5706 8.450578 TTCTGTAAGCTCAGATTCTTGAAAAA 57.549 30.769 5.99 0.00 42.84 1.94
4770 5708 8.509690 TCTGTAAGCTCAGATTCTTGAAAAATG 58.490 33.333 1.08 0.00 39.20 2.32
4772 5710 5.717078 AGCTCAGATTCTTGAAAAATGCA 57.283 34.783 0.00 0.00 0.00 3.96
5327 6280 2.948979 ACGTGCTCAAAATCTGGTTTCA 59.051 40.909 0.00 0.00 0.00 2.69
5480 6435 5.596268 CGTACATACGGCTGTATACTACA 57.404 43.478 17.79 0.00 45.30 2.74
5481 6436 6.174451 CGTACATACGGCTGTATACTACAT 57.826 41.667 17.79 3.11 45.30 2.29
5482 6437 6.605849 CGTACATACGGCTGTATACTACATT 58.394 40.000 17.79 0.00 45.30 2.71
5549 6557 3.684305 TGTGTGGAGCTCATATCAAAACG 59.316 43.478 17.19 0.00 0.00 3.60
5552 6560 4.868171 TGTGGAGCTCATATCAAAACGTAC 59.132 41.667 17.19 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.965439 TGGTTTTGCATAGTGGTGCC 59.035 50.000 0.00 0.00 44.43 5.01
1 2 1.336795 GGTGGTTTTGCATAGTGGTGC 60.337 52.381 0.00 0.00 45.25 5.01
2 3 1.959985 TGGTGGTTTTGCATAGTGGTG 59.040 47.619 0.00 0.00 0.00 4.17
7 8 2.455557 TGGGATGGTGGTTTTGCATAG 58.544 47.619 0.00 0.00 0.00 2.23
8 9 2.612285 TGGGATGGTGGTTTTGCATA 57.388 45.000 0.00 0.00 0.00 3.14
9 10 1.955451 ATGGGATGGTGGTTTTGCAT 58.045 45.000 0.00 0.00 0.00 3.96
10 11 2.175202 GTATGGGATGGTGGTTTTGCA 58.825 47.619 0.00 0.00 0.00 4.08
11 12 2.166254 CAGTATGGGATGGTGGTTTTGC 59.834 50.000 0.00 0.00 0.00 3.68
12 13 2.166254 GCAGTATGGGATGGTGGTTTTG 59.834 50.000 0.00 0.00 35.86 2.44
13 14 2.042979 AGCAGTATGGGATGGTGGTTTT 59.957 45.455 0.00 0.00 35.86 2.43
17 18 3.117888 ACTTTAGCAGTATGGGATGGTGG 60.118 47.826 0.00 0.00 35.86 4.61
18 19 3.879295 CACTTTAGCAGTATGGGATGGTG 59.121 47.826 0.00 0.00 35.86 4.17
19 20 3.117888 CCACTTTAGCAGTATGGGATGGT 60.118 47.826 0.00 0.00 35.86 3.55
20 21 3.136443 TCCACTTTAGCAGTATGGGATGG 59.864 47.826 0.00 0.00 35.86 3.51
21 22 4.384056 CTCCACTTTAGCAGTATGGGATG 58.616 47.826 0.00 0.00 35.86 3.51
22 23 3.392616 CCTCCACTTTAGCAGTATGGGAT 59.607 47.826 0.00 0.00 35.86 3.85
23 24 2.771943 CCTCCACTTTAGCAGTATGGGA 59.228 50.000 0.00 0.00 35.86 4.37
24 25 2.505819 ACCTCCACTTTAGCAGTATGGG 59.494 50.000 0.00 0.00 35.86 4.00
25 26 3.914426 ACCTCCACTTTAGCAGTATGG 57.086 47.619 0.00 0.00 35.86 2.74
26 27 3.941483 CCAACCTCCACTTTAGCAGTATG 59.059 47.826 0.00 0.00 40.87 2.39
27 28 3.054361 CCCAACCTCCACTTTAGCAGTAT 60.054 47.826 0.00 0.00 32.76 2.12
28 29 2.304761 CCCAACCTCCACTTTAGCAGTA 59.695 50.000 0.00 0.00 32.76 2.74
29 30 1.073923 CCCAACCTCCACTTTAGCAGT 59.926 52.381 0.00 0.00 35.35 4.40
30 31 1.614317 CCCCAACCTCCACTTTAGCAG 60.614 57.143 0.00 0.00 0.00 4.24
31 32 0.404040 CCCCAACCTCCACTTTAGCA 59.596 55.000 0.00 0.00 0.00 3.49
32 33 0.323451 CCCCCAACCTCCACTTTAGC 60.323 60.000 0.00 0.00 0.00 3.09
33 34 3.978876 CCCCCAACCTCCACTTTAG 57.021 57.895 0.00 0.00 0.00 1.85
48 49 2.028876 CAAACCGGATAAATCACCCCC 58.971 52.381 9.46 0.00 0.00 5.40
49 50 2.028876 CCAAACCGGATAAATCACCCC 58.971 52.381 9.46 0.00 36.56 4.95
50 51 2.028876 CCCAAACCGGATAAATCACCC 58.971 52.381 9.46 0.00 36.56 4.61
51 52 3.007473 TCCCAAACCGGATAAATCACC 57.993 47.619 9.46 0.00 36.56 4.02
52 53 5.374071 ACTATCCCAAACCGGATAAATCAC 58.626 41.667 9.46 0.00 42.94 3.06
53 54 5.368523 AGACTATCCCAAACCGGATAAATCA 59.631 40.000 9.46 0.00 42.94 2.57
54 55 5.866207 AGACTATCCCAAACCGGATAAATC 58.134 41.667 9.46 0.00 42.94 2.17
55 56 5.906772 AGACTATCCCAAACCGGATAAAT 57.093 39.130 9.46 0.00 42.94 1.40
56 57 5.306160 CCTAGACTATCCCAAACCGGATAAA 59.694 44.000 9.46 0.00 42.94 1.40
57 58 4.836736 CCTAGACTATCCCAAACCGGATAA 59.163 45.833 9.46 0.00 42.94 1.75
58 59 4.413760 CCTAGACTATCCCAAACCGGATA 58.586 47.826 9.46 0.00 42.79 2.59
59 60 3.240302 CCTAGACTATCCCAAACCGGAT 58.760 50.000 9.46 0.00 45.01 4.18
60 61 2.674420 CCTAGACTATCCCAAACCGGA 58.326 52.381 9.46 0.00 36.56 5.14
61 62 1.692519 CCCTAGACTATCCCAAACCGG 59.307 57.143 0.00 0.00 0.00 5.28
62 63 1.692519 CCCCTAGACTATCCCAAACCG 59.307 57.143 0.00 0.00 0.00 4.44
63 64 3.056201 TCCCCTAGACTATCCCAAACC 57.944 52.381 0.00 0.00 0.00 3.27
64 65 6.557633 TCTTAATCCCCTAGACTATCCCAAAC 59.442 42.308 0.00 0.00 0.00 2.93
65 66 6.699688 TCTTAATCCCCTAGACTATCCCAAA 58.300 40.000 0.00 0.00 0.00 3.28
66 67 6.303427 TCTTAATCCCCTAGACTATCCCAA 57.697 41.667 0.00 0.00 0.00 4.12
67 68 5.961399 TCTTAATCCCCTAGACTATCCCA 57.039 43.478 0.00 0.00 0.00 4.37
68 69 5.484644 GGTTCTTAATCCCCTAGACTATCCC 59.515 48.000 0.00 0.00 0.00 3.85
69 70 6.082707 TGGTTCTTAATCCCCTAGACTATCC 58.917 44.000 0.00 0.00 0.00 2.59
70 71 7.235812 ACATGGTTCTTAATCCCCTAGACTATC 59.764 40.741 0.00 0.00 0.00 2.08
71 72 7.082972 ACATGGTTCTTAATCCCCTAGACTAT 58.917 38.462 0.00 0.00 0.00 2.12
72 73 6.449956 ACATGGTTCTTAATCCCCTAGACTA 58.550 40.000 0.00 0.00 0.00 2.59
73 74 5.289510 ACATGGTTCTTAATCCCCTAGACT 58.710 41.667 0.00 0.00 0.00 3.24
74 75 5.632034 ACATGGTTCTTAATCCCCTAGAC 57.368 43.478 0.00 0.00 0.00 2.59
75 76 6.652205 AAACATGGTTCTTAATCCCCTAGA 57.348 37.500 0.00 0.00 0.00 2.43
76 77 8.817092 TTAAAACATGGTTCTTAATCCCCTAG 57.183 34.615 0.00 0.00 0.00 3.02
77 78 9.250246 CTTTAAAACATGGTTCTTAATCCCCTA 57.750 33.333 0.00 0.00 0.00 3.53
78 79 7.733047 ACTTTAAAACATGGTTCTTAATCCCCT 59.267 33.333 0.00 0.00 0.00 4.79
79 80 7.903145 ACTTTAAAACATGGTTCTTAATCCCC 58.097 34.615 0.00 0.00 0.00 4.81
80 81 9.772973 AAACTTTAAAACATGGTTCTTAATCCC 57.227 29.630 0.00 0.00 0.00 3.85
106 107 1.008938 CATATCCCCCACCCCCAAAAA 59.991 52.381 0.00 0.00 0.00 1.94
107 108 0.639392 CATATCCCCCACCCCCAAAA 59.361 55.000 0.00 0.00 0.00 2.44
108 109 0.556380 ACATATCCCCCACCCCCAAA 60.556 55.000 0.00 0.00 0.00 3.28
109 110 1.087725 ACATATCCCCCACCCCCAA 59.912 57.895 0.00 0.00 0.00 4.12
110 111 1.699566 CACATATCCCCCACCCCCA 60.700 63.158 0.00 0.00 0.00 4.96
111 112 0.776080 ATCACATATCCCCCACCCCC 60.776 60.000 0.00 0.00 0.00 5.40
112 113 0.698818 GATCACATATCCCCCACCCC 59.301 60.000 0.00 0.00 0.00 4.95
113 114 0.698818 GGATCACATATCCCCCACCC 59.301 60.000 0.00 0.00 32.09 4.61
114 115 1.444933 TGGATCACATATCCCCCACC 58.555 55.000 0.00 0.00 37.40 4.61
115 116 3.593442 TTTGGATCACATATCCCCCAC 57.407 47.619 0.00 0.00 37.40 4.61
116 117 3.181419 CCATTTGGATCACATATCCCCCA 60.181 47.826 0.00 0.00 37.40 4.96
117 118 3.434309 CCATTTGGATCACATATCCCCC 58.566 50.000 0.00 0.00 37.40 5.40
118 119 3.075882 TCCCATTTGGATCACATATCCCC 59.924 47.826 0.00 0.00 38.61 4.81
119 120 4.387026 TCCCATTTGGATCACATATCCC 57.613 45.455 0.00 0.00 38.61 3.85
131 132 2.244769 ACCCCAGAACTATCCCATTTGG 59.755 50.000 0.00 0.00 0.00 3.28
132 133 3.669939 ACCCCAGAACTATCCCATTTG 57.330 47.619 0.00 0.00 0.00 2.32
133 134 5.676811 AGATAACCCCAGAACTATCCCATTT 59.323 40.000 0.00 0.00 0.00 2.32
134 135 5.235534 AGATAACCCCAGAACTATCCCATT 58.764 41.667 0.00 0.00 0.00 3.16
135 136 4.844348 AGATAACCCCAGAACTATCCCAT 58.156 43.478 0.00 0.00 0.00 4.00
136 137 4.295905 AGATAACCCCAGAACTATCCCA 57.704 45.455 0.00 0.00 0.00 4.37
137 138 7.190501 AGTATAGATAACCCCAGAACTATCCC 58.809 42.308 0.00 0.00 0.00 3.85
138 139 8.667592 AAGTATAGATAACCCCAGAACTATCC 57.332 38.462 0.00 0.00 0.00 2.59
142 143 9.059023 AGAAAAAGTATAGATAACCCCAGAACT 57.941 33.333 0.00 0.00 0.00 3.01
143 144 9.110502 CAGAAAAAGTATAGATAACCCCAGAAC 57.889 37.037 0.00 0.00 0.00 3.01
144 145 8.272173 CCAGAAAAAGTATAGATAACCCCAGAA 58.728 37.037 0.00 0.00 0.00 3.02
145 146 7.404980 ACCAGAAAAAGTATAGATAACCCCAGA 59.595 37.037 0.00 0.00 0.00 3.86
207 208 1.062275 TGGGGAGCAATGGCCATAATT 60.062 47.619 21.15 7.11 42.56 1.40
244 245 5.496556 TGTATCCGAATGACAACTTCCATT 58.503 37.500 0.00 0.00 35.87 3.16
261 262 8.837788 TCAATGAGATTACACATGATGTATCC 57.162 34.615 0.00 0.65 43.46 2.59
347 348 3.119955 CCAGCTGACATGAACAGAACATG 60.120 47.826 17.39 0.00 46.96 3.21
351 352 2.158769 ACACCAGCTGACATGAACAGAA 60.159 45.455 17.39 0.00 37.54 3.02
353 354 1.802960 GACACCAGCTGACATGAACAG 59.197 52.381 17.39 16.07 38.27 3.16
354 355 1.417517 AGACACCAGCTGACATGAACA 59.582 47.619 17.39 0.00 0.00 3.18
472 475 1.398692 TTTCAACCAAGGAGGCACAC 58.601 50.000 0.00 0.00 43.14 3.82
505 509 8.621532 TTTTCTATGAAGTGTAGTGCAAGATT 57.378 30.769 0.00 0.00 0.00 2.40
546 550 9.547279 AACAAGGATTAATTTCTCCAAATAGGT 57.453 29.630 8.28 0.00 39.02 3.08
553 557 9.308000 ACATACAAACAAGGATTAATTTCTCCA 57.692 29.630 8.28 0.00 33.75 3.86
554 558 9.573133 CACATACAAACAAGGATTAATTTCTCC 57.427 33.333 0.00 0.00 0.00 3.71
555 559 9.076596 GCACATACAAACAAGGATTAATTTCTC 57.923 33.333 0.00 0.00 0.00 2.87
556 560 8.584157 TGCACATACAAACAAGGATTAATTTCT 58.416 29.630 0.00 0.00 0.00 2.52
557 561 8.755696 TGCACATACAAACAAGGATTAATTTC 57.244 30.769 0.00 0.00 0.00 2.17
558 562 8.987890 GTTGCACATACAAACAAGGATTAATTT 58.012 29.630 0.00 0.00 0.00 1.82
559 563 7.328249 CGTTGCACATACAAACAAGGATTAATT 59.672 33.333 0.00 0.00 31.38 1.40
560 564 6.806249 CGTTGCACATACAAACAAGGATTAAT 59.194 34.615 0.00 0.00 31.38 1.40
561 565 6.017026 TCGTTGCACATACAAACAAGGATTAA 60.017 34.615 0.00 0.00 33.44 1.40
562 566 5.470437 TCGTTGCACATACAAACAAGGATTA 59.530 36.000 0.00 0.00 33.44 1.75
563 567 4.277174 TCGTTGCACATACAAACAAGGATT 59.723 37.500 0.00 0.00 33.44 3.01
564 568 3.818210 TCGTTGCACATACAAACAAGGAT 59.182 39.130 0.00 0.00 33.44 3.24
565 569 3.002862 GTCGTTGCACATACAAACAAGGA 59.997 43.478 0.00 0.00 35.31 3.36
566 570 3.242903 TGTCGTTGCACATACAAACAAGG 60.243 43.478 0.00 0.00 0.00 3.61
567 571 3.723764 GTGTCGTTGCACATACAAACAAG 59.276 43.478 0.00 0.00 39.07 3.16
568 572 3.127030 TGTGTCGTTGCACATACAAACAA 59.873 39.130 6.23 0.00 43.54 2.83
569 573 2.678336 TGTGTCGTTGCACATACAAACA 59.322 40.909 6.23 0.00 43.54 2.83
570 574 3.326733 TGTGTCGTTGCACATACAAAC 57.673 42.857 6.23 0.00 43.54 2.93
577 581 3.579709 ACAATTTTTGTGTCGTTGCACA 58.420 36.364 6.23 6.23 46.30 4.57
578 582 4.163475 GACAATTTTTGTGTCGTTGCAC 57.837 40.909 0.00 0.00 45.52 4.57
594 598 7.537715 TGCTCATTTGATTTTCATACGACAAT 58.462 30.769 0.00 0.00 0.00 2.71
596 600 6.493449 TGCTCATTTGATTTTCATACGACA 57.507 33.333 0.00 0.00 0.00 4.35
597 601 7.164826 GTCATGCTCATTTGATTTTCATACGAC 59.835 37.037 0.00 0.00 0.00 4.34
604 608 3.549070 GGCGTCATGCTCATTTGATTTTC 59.451 43.478 0.00 0.00 45.43 2.29
636 640 8.660373 TGTGAAAAACGCAAAACATAGAAAAAT 58.340 25.926 0.00 0.00 35.99 1.82
637 641 7.952637 GTGTGAAAAACGCAAAACATAGAAAAA 59.047 29.630 0.00 0.00 40.81 1.94
644 648 3.898005 CGTGTGAAAAACGCAAAACAT 57.102 38.095 0.00 0.00 42.68 2.71
653 657 8.260433 ACGATTTAAATGTACGTGTGAAAAAC 57.740 30.769 5.17 0.00 35.91 2.43
654 658 8.734933 CAACGATTTAAATGTACGTGTGAAAAA 58.265 29.630 5.17 0.00 37.28 1.94
656 660 7.408123 ACAACGATTTAAATGTACGTGTGAAA 58.592 30.769 5.17 0.00 37.28 2.69
664 668 8.007716 CGGGATATGACAACGATTTAAATGTAC 58.992 37.037 5.17 0.00 0.00 2.90
673 677 3.118920 TGACACGGGATATGACAACGATT 60.119 43.478 0.00 0.00 0.00 3.34
675 679 1.819903 TGACACGGGATATGACAACGA 59.180 47.619 0.00 0.00 0.00 3.85
676 680 2.193447 CTGACACGGGATATGACAACG 58.807 52.381 0.00 0.00 0.00 4.10
677 681 3.247006 ACTGACACGGGATATGACAAC 57.753 47.619 0.00 0.00 0.00 3.32
678 682 3.973206 AACTGACACGGGATATGACAA 57.027 42.857 0.00 0.00 0.00 3.18
679 683 3.259625 TCAAACTGACACGGGATATGACA 59.740 43.478 0.00 0.00 0.00 3.58
680 684 3.617263 GTCAAACTGACACGGGATATGAC 59.383 47.826 0.00 0.00 46.22 3.06
695 706 2.722094 TGAACTGCCACTTGTCAAACT 58.278 42.857 0.00 0.00 0.00 2.66
715 726 7.037008 TGGAAAATGGGTTATTGGGATCATTTT 60.037 33.333 10.36 10.36 43.21 1.82
747 758 1.203928 CGGATGCGAGTGTGAAGATC 58.796 55.000 0.00 0.00 0.00 2.75
748 759 0.179100 CCGGATGCGAGTGTGAAGAT 60.179 55.000 8.71 0.00 0.00 2.40
772 801 0.891904 GAACCGGCTTTGCAACCCTA 60.892 55.000 0.00 0.00 0.00 3.53
1012 1109 2.678470 GTTTATGGGTGGGGGCGA 59.322 61.111 0.00 0.00 0.00 5.54
1036 1133 2.123077 AGGAGGAGGATCTGGGCG 60.123 66.667 0.00 0.00 33.73 6.13
1047 1144 2.015726 GGAGGAGGGAGGAGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
1169 1443 0.252284 GGGGACTGAGGAGTTGAGGA 60.252 60.000 0.00 0.00 30.16 3.71
1174 1448 1.913762 CGGTGGGGACTGAGGAGTT 60.914 63.158 0.00 0.00 30.16 3.01
1232 1506 2.444624 CGCACAGGAATCGGTCACG 61.445 63.158 0.00 0.00 42.74 4.35
1479 1753 0.537188 ACAGATAGCAGGTCGGGTTG 59.463 55.000 0.00 0.00 0.00 3.77
1480 1754 1.066143 CAACAGATAGCAGGTCGGGTT 60.066 52.381 0.00 0.00 0.00 4.11
1490 1764 2.815478 CGGAGGAGAACAACAGATAGC 58.185 52.381 0.00 0.00 0.00 2.97
1502 1776 1.332195 ATGAATCATCGCGGAGGAGA 58.668 50.000 6.13 0.00 0.00 3.71
1507 1781 1.202568 AGCTGAATGAATCATCGCGGA 60.203 47.619 6.13 0.00 37.44 5.54
1508 1782 1.070108 CAGCTGAATGAATCATCGCGG 60.070 52.381 8.42 0.00 37.44 6.46
1509 1783 1.659491 GCAGCTGAATGAATCATCGCG 60.659 52.381 20.43 0.00 37.44 5.87
1510 1784 1.602851 AGCAGCTGAATGAATCATCGC 59.397 47.619 20.43 0.23 37.44 4.58
1511 1785 3.120615 GCTAGCAGCTGAATGAATCATCG 60.121 47.826 20.43 0.00 38.45 3.84
1514 1788 2.159057 TCGCTAGCAGCTGAATGAATCA 60.159 45.455 20.43 0.00 39.60 2.57
1515 1789 2.220593 GTCGCTAGCAGCTGAATGAATC 59.779 50.000 20.43 0.00 39.60 2.52
1516 1790 2.208431 GTCGCTAGCAGCTGAATGAAT 58.792 47.619 20.43 0.00 39.60 2.57
1517 1791 1.645034 GTCGCTAGCAGCTGAATGAA 58.355 50.000 20.43 0.00 39.60 2.57
1518 1792 0.526310 CGTCGCTAGCAGCTGAATGA 60.526 55.000 20.43 4.11 39.60 2.57
1519 1793 1.485838 CCGTCGCTAGCAGCTGAATG 61.486 60.000 20.43 6.91 39.60 2.67
1520 1794 1.227089 CCGTCGCTAGCAGCTGAAT 60.227 57.895 20.43 7.58 39.60 2.57
1521 1795 2.181777 CCGTCGCTAGCAGCTGAA 59.818 61.111 20.43 3.08 39.60 3.02
1539 1813 4.444388 CACAGTATGATTAGCGCATAACGT 59.556 41.667 11.47 2.28 41.69 3.99
1540 1814 4.679654 TCACAGTATGATTAGCGCATAACG 59.320 41.667 11.47 0.00 42.46 3.18
1541 1815 6.146184 ACATCACAGTATGATTAGCGCATAAC 59.854 38.462 11.47 0.00 46.54 1.89
1558 1832 3.181483 TGTCATCCTGATCGACATCACAG 60.181 47.826 0.00 0.00 34.83 3.66
1559 1833 2.760092 TGTCATCCTGATCGACATCACA 59.240 45.455 0.00 0.00 34.83 3.58
1576 1850 1.284715 CGTGCTCACTACGGTGTCA 59.715 57.895 0.00 0.00 43.41 3.58
1585 1859 1.645034 CAAATCGATCCGTGCTCACT 58.355 50.000 0.00 0.00 0.00 3.41
1598 1872 0.667184 GCAAGCCACCAACCAAATCG 60.667 55.000 0.00 0.00 0.00 3.34
1677 1959 4.062991 CGGTTAAGAATAAGAATCCCCCG 58.937 47.826 0.00 0.00 0.00 5.73
1701 1983 1.327690 TTAGGTAGGGAGCGTGCAGG 61.328 60.000 1.01 1.01 0.00 4.85
1703 1985 0.248289 GTTTAGGTAGGGAGCGTGCA 59.752 55.000 0.00 0.00 0.00 4.57
1766 2048 4.689612 TTGGGAGGTCATTATCTAGCAC 57.310 45.455 0.00 0.00 0.00 4.40
1789 2071 2.419673 CGCCAGAAACTGCACATGATTA 59.580 45.455 0.00 0.00 0.00 1.75
1831 2295 6.419771 GCACAACAAGAAGTCAGTAAAGTAC 58.580 40.000 0.00 0.00 0.00 2.73
1843 2307 1.069227 GGCTAACCGCACAACAAGAAG 60.069 52.381 0.00 0.00 41.67 2.85
1849 2313 1.076332 CACTAGGCTAACCGCACAAC 58.924 55.000 0.00 0.00 42.76 3.32
1856 2320 1.485480 GGGAACTCCACTAGGCTAACC 59.515 57.143 0.00 0.00 37.91 2.85
1857 2321 2.185387 TGGGAACTCCACTAGGCTAAC 58.815 52.381 0.00 0.00 41.46 2.34
1885 2349 2.424601 GCATGCTATTGTCAAGGCTTCA 59.575 45.455 11.37 0.00 0.00 3.02
1886 2350 2.223665 GGCATGCTATTGTCAAGGCTTC 60.224 50.000 18.92 0.00 0.00 3.86
1889 2353 1.396653 AGGCATGCTATTGTCAAGGC 58.603 50.000 18.92 6.42 0.00 4.35
1939 2403 9.147732 AGGAACAAATAAAAGGAGTTTCTGAAT 57.852 29.630 0.00 0.00 0.00 2.57
1981 2445 4.020218 AGCTTGGACTGCACTTATCACTTA 60.020 41.667 0.00 0.00 0.00 2.24
1984 2448 2.704572 AGCTTGGACTGCACTTATCAC 58.295 47.619 0.00 0.00 0.00 3.06
2024 2488 6.401903 CCGTCATTTCTTTCAGACTCTCAATG 60.402 42.308 0.00 0.00 0.00 2.82
2079 2544 9.550406 TCATTCTCTTTTCTTTTCAATTTGCAT 57.450 25.926 0.00 0.00 0.00 3.96
2111 2576 3.130516 ACAAACTTCAGAGACACGAGACA 59.869 43.478 0.00 0.00 0.00 3.41
2112 2577 3.487574 CACAAACTTCAGAGACACGAGAC 59.512 47.826 0.00 0.00 0.00 3.36
2132 2597 3.003689 ACTGCAATTGTTAGCTGTGTCAC 59.996 43.478 7.40 0.00 40.65 3.67
2135 2600 3.480470 AGACTGCAATTGTTAGCTGTGT 58.520 40.909 7.40 0.00 41.93 3.72
2136 2601 4.692625 ACTAGACTGCAATTGTTAGCTGTG 59.307 41.667 7.40 7.82 41.93 3.66
2137 2602 4.899502 ACTAGACTGCAATTGTTAGCTGT 58.100 39.130 7.40 2.56 44.05 4.40
2597 3065 6.803807 GCATGTAAAAGCTGTTTAAGAGAAGG 59.196 38.462 0.00 0.00 0.00 3.46
2889 3406 5.001232 CGGAGAGGTTGGTTTCAAATTAGA 58.999 41.667 0.00 0.00 34.28 2.10
3021 3538 4.499696 GCATAGCCAGTGTTGAACAAAACT 60.500 41.667 0.00 4.73 39.36 2.66
3022 3539 3.735746 GCATAGCCAGTGTTGAACAAAAC 59.264 43.478 0.00 0.10 0.00 2.43
3024 3541 2.954989 TGCATAGCCAGTGTTGAACAAA 59.045 40.909 0.00 0.00 0.00 2.83
3025 3542 2.580962 TGCATAGCCAGTGTTGAACAA 58.419 42.857 0.00 0.00 0.00 2.83
3027 3544 3.855689 AATGCATAGCCAGTGTTGAAC 57.144 42.857 0.00 0.00 0.00 3.18
3028 3545 3.573538 ACAAATGCATAGCCAGTGTTGAA 59.426 39.130 0.00 0.00 0.00 2.69
3029 3546 3.057386 CACAAATGCATAGCCAGTGTTGA 60.057 43.478 0.00 0.00 0.00 3.18
3030 3547 3.057386 TCACAAATGCATAGCCAGTGTTG 60.057 43.478 0.00 0.30 0.00 3.33
3031 3548 3.156293 TCACAAATGCATAGCCAGTGTT 58.844 40.909 0.00 0.00 0.00 3.32
3032 3549 2.794103 TCACAAATGCATAGCCAGTGT 58.206 42.857 0.00 0.00 0.00 3.55
3034 3551 4.018490 TCATTCACAAATGCATAGCCAGT 58.982 39.130 0.00 0.00 41.76 4.00
3059 3613 7.650104 GTGCCTTTGATCTGTCTACTATCTAAC 59.350 40.741 0.00 0.00 0.00 2.34
3067 3621 2.675348 GCTGTGCCTTTGATCTGTCTAC 59.325 50.000 0.00 0.00 0.00 2.59
3074 3628 6.194796 TGTAAATTAGCTGTGCCTTTGATC 57.805 37.500 0.00 0.00 0.00 2.92
3076 3630 6.588719 ATTGTAAATTAGCTGTGCCTTTGA 57.411 33.333 0.00 0.00 0.00 2.69
3077 3631 6.867816 TGAATTGTAAATTAGCTGTGCCTTTG 59.132 34.615 0.00 0.00 0.00 2.77
3078 3632 6.868339 GTGAATTGTAAATTAGCTGTGCCTTT 59.132 34.615 0.00 0.00 0.00 3.11
3079 3633 6.015519 TGTGAATTGTAAATTAGCTGTGCCTT 60.016 34.615 0.00 0.00 0.00 4.35
3080 3634 5.476599 TGTGAATTGTAAATTAGCTGTGCCT 59.523 36.000 0.00 0.00 0.00 4.75
3081 3635 5.708948 TGTGAATTGTAAATTAGCTGTGCC 58.291 37.500 0.00 0.00 0.00 5.01
3082 3636 7.636259 TTTGTGAATTGTAAATTAGCTGTGC 57.364 32.000 0.00 0.00 0.00 4.57
3083 3637 8.863049 GGATTTGTGAATTGTAAATTAGCTGTG 58.137 33.333 0.00 0.00 0.00 3.66
3085 3639 9.079833 CAGGATTTGTGAATTGTAAATTAGCTG 57.920 33.333 0.00 0.00 0.00 4.24
3086 3640 7.761249 GCAGGATTTGTGAATTGTAAATTAGCT 59.239 33.333 0.00 0.00 0.00 3.32
3087 3641 7.545265 TGCAGGATTTGTGAATTGTAAATTAGC 59.455 33.333 0.00 0.00 0.00 3.09
3088 3642 8.984891 TGCAGGATTTGTGAATTGTAAATTAG 57.015 30.769 0.00 0.00 0.00 1.73
3089 3643 8.801299 TCTGCAGGATTTGTGAATTGTAAATTA 58.199 29.630 15.13 0.00 0.00 1.40
3090 3644 7.669427 TCTGCAGGATTTGTGAATTGTAAATT 58.331 30.769 15.13 0.00 0.00 1.82
3091 3645 7.230849 TCTGCAGGATTTGTGAATTGTAAAT 57.769 32.000 15.13 0.00 0.00 1.40
3092 3646 6.647334 TCTGCAGGATTTGTGAATTGTAAA 57.353 33.333 15.13 0.00 0.00 2.01
3093 3647 6.647334 TTCTGCAGGATTTGTGAATTGTAA 57.353 33.333 15.13 0.00 0.00 2.41
3094 3648 5.335897 GCTTCTGCAGGATTTGTGAATTGTA 60.336 40.000 15.13 0.00 39.41 2.41
3095 3649 4.560108 GCTTCTGCAGGATTTGTGAATTGT 60.560 41.667 15.13 0.00 39.41 2.71
3096 3650 3.924686 GCTTCTGCAGGATTTGTGAATTG 59.075 43.478 15.13 0.00 39.41 2.32
3097 3651 3.366679 CGCTTCTGCAGGATTTGTGAATT 60.367 43.478 15.13 0.00 39.64 2.17
3098 3652 2.163010 CGCTTCTGCAGGATTTGTGAAT 59.837 45.455 15.13 0.00 39.64 2.57
3099 3653 1.536766 CGCTTCTGCAGGATTTGTGAA 59.463 47.619 15.13 0.00 39.64 3.18
3100 3654 1.159285 CGCTTCTGCAGGATTTGTGA 58.841 50.000 15.13 0.00 39.64 3.58
3101 3655 1.159285 TCGCTTCTGCAGGATTTGTG 58.841 50.000 15.13 0.00 39.64 3.33
3102 3656 2.119801 ATCGCTTCTGCAGGATTTGT 57.880 45.000 15.13 0.00 39.64 2.83
3103 3657 4.036027 ACAATATCGCTTCTGCAGGATTTG 59.964 41.667 15.13 15.37 39.64 2.32
3104 3658 4.202441 ACAATATCGCTTCTGCAGGATTT 58.798 39.130 15.13 0.94 39.64 2.17
3105 3659 3.813443 ACAATATCGCTTCTGCAGGATT 58.187 40.909 15.13 0.00 39.64 3.01
3106 3660 3.482156 ACAATATCGCTTCTGCAGGAT 57.518 42.857 15.13 10.95 39.64 3.24
3107 3661 2.988010 ACAATATCGCTTCTGCAGGA 57.012 45.000 15.13 3.47 39.64 3.86
3108 3662 4.100529 CAAAACAATATCGCTTCTGCAGG 58.899 43.478 15.13 0.00 39.64 4.85
3109 3663 4.556135 CACAAAACAATATCGCTTCTGCAG 59.444 41.667 7.63 7.63 39.64 4.41
3110 3664 4.475028 CACAAAACAATATCGCTTCTGCA 58.525 39.130 0.00 0.00 39.64 4.41
3111 3665 3.853671 CCACAAAACAATATCGCTTCTGC 59.146 43.478 0.00 0.00 0.00 4.26
3112 3666 4.082787 ACCCACAAAACAATATCGCTTCTG 60.083 41.667 0.00 0.00 0.00 3.02
3113 3667 4.079253 ACCCACAAAACAATATCGCTTCT 58.921 39.130 0.00 0.00 0.00 2.85
3114 3668 4.434713 ACCCACAAAACAATATCGCTTC 57.565 40.909 0.00 0.00 0.00 3.86
3115 3669 5.968528 TTACCCACAAAACAATATCGCTT 57.031 34.783 0.00 0.00 0.00 4.68
3116 3670 7.817418 ATATTACCCACAAAACAATATCGCT 57.183 32.000 0.00 0.00 0.00 4.93
3117 3671 8.865590 AAATATTACCCACAAAACAATATCGC 57.134 30.769 0.00 0.00 0.00 4.58
3122 3676 7.602265 GCACTGAAATATTACCCACAAAACAAT 59.398 33.333 0.00 0.00 0.00 2.71
3124 3678 6.040955 TGCACTGAAATATTACCCACAAAACA 59.959 34.615 0.00 0.00 0.00 2.83
3125 3679 6.451393 TGCACTGAAATATTACCCACAAAAC 58.549 36.000 0.00 0.00 0.00 2.43
3129 3683 5.047660 GGTTTGCACTGAAATATTACCCACA 60.048 40.000 0.00 0.00 0.00 4.17
3130 3684 5.407502 GGTTTGCACTGAAATATTACCCAC 58.592 41.667 0.00 0.00 0.00 4.61
3131 3685 4.464597 GGGTTTGCACTGAAATATTACCCA 59.535 41.667 10.98 0.29 41.80 4.51
3135 3689 7.658525 ATGATGGGTTTGCACTGAAATATTA 57.341 32.000 0.00 0.00 0.00 0.98
3142 3696 5.479724 TCATTAAATGATGGGTTTGCACTGA 59.520 36.000 0.00 0.00 33.59 3.41
3143 3697 5.722263 TCATTAAATGATGGGTTTGCACTG 58.278 37.500 0.00 0.00 33.59 3.66
3183 3739 5.185454 CCAGACACAATGGCTATCACTTAA 58.815 41.667 0.00 0.00 29.42 1.85
3184 3740 4.769688 CCAGACACAATGGCTATCACTTA 58.230 43.478 0.00 0.00 29.42 2.24
3194 3750 1.238439 ACGAAAGCCAGACACAATGG 58.762 50.000 0.00 0.00 41.04 3.16
3196 3752 2.571212 TCAACGAAAGCCAGACACAAT 58.429 42.857 0.00 0.00 0.00 2.71
3212 3768 0.868406 CACAGTCCTCGGCTTTCAAC 59.132 55.000 0.00 0.00 0.00 3.18
3225 3781 4.303086 ACCTATGTACATACGCACAGTC 57.697 45.455 11.62 0.00 0.00 3.51
3228 3784 5.584442 CAACTACCTATGTACATACGCACA 58.416 41.667 11.62 0.00 0.00 4.57
3233 3789 5.510861 CCCCAGCAACTACCTATGTACATAC 60.511 48.000 11.62 0.06 0.00 2.39
3236 3792 2.769663 CCCCAGCAACTACCTATGTACA 59.230 50.000 0.00 0.00 0.00 2.90
3240 3796 2.505819 AGAACCCCAGCAACTACCTATG 59.494 50.000 0.00 0.00 0.00 2.23
3259 3815 7.178451 TGTTAACTCTGGACTGTAATCATGAGA 59.822 37.037 7.22 0.00 0.00 3.27
3264 3820 6.929049 CACTTGTTAACTCTGGACTGTAATCA 59.071 38.462 7.22 0.00 0.00 2.57
3290 3846 8.188139 TGTCCTACTTTTGTTTTTGCTAAGAAG 58.812 33.333 0.00 0.00 0.00 2.85
3291 3847 8.057536 TGTCCTACTTTTGTTTTTGCTAAGAA 57.942 30.769 0.00 0.00 0.00 2.52
3295 3851 6.547880 TGGATGTCCTACTTTTGTTTTTGCTA 59.452 34.615 0.09 0.00 36.82 3.49
3307 3863 5.367937 AGCTGTATGATTGGATGTCCTACTT 59.632 40.000 0.09 0.00 36.82 2.24
3310 3866 4.901250 TGAGCTGTATGATTGGATGTCCTA 59.099 41.667 0.00 0.00 36.82 2.94
3314 3870 5.443283 ACATTGAGCTGTATGATTGGATGT 58.557 37.500 10.73 0.00 0.00 3.06
3361 3931 3.445096 GGCTACATGAGGACATTGCTTTT 59.555 43.478 0.00 0.00 34.15 2.27
3388 3958 5.172205 GCAGGACTAGAAAACTAGAACCTG 58.828 45.833 27.24 27.24 45.32 4.00
3410 3980 1.066908 TGCACTTTGTTGGCTTACTGC 59.933 47.619 0.00 0.00 41.94 4.40
3412 3982 2.930950 TCTGCACTTTGTTGGCTTACT 58.069 42.857 0.00 0.00 0.00 2.24
3415 3985 1.410153 CCTTCTGCACTTTGTTGGCTT 59.590 47.619 0.00 0.00 0.00 4.35
3428 4046 1.986575 GATGCGGTCTTGCCTTCTGC 61.987 60.000 0.00 0.00 41.77 4.26
3433 4051 0.254178 ATTGAGATGCGGTCTTGCCT 59.746 50.000 0.00 0.00 37.29 4.75
3434 4052 1.953559 TATTGAGATGCGGTCTTGCC 58.046 50.000 0.00 0.00 37.29 4.52
3439 4057 5.294306 TCAGAAAACATATTGAGATGCGGTC 59.706 40.000 0.00 0.00 0.00 4.79
3451 4069 8.723942 AAGCGATTCTACTTCAGAAAACATAT 57.276 30.769 0.00 0.00 46.29 1.78
3453 4071 8.547967 TTAAGCGATTCTACTTCAGAAAACAT 57.452 30.769 0.00 0.00 46.29 2.71
3479 4097 2.355837 GCCGTTCGCTGTCACTCA 60.356 61.111 0.00 0.00 0.00 3.41
3566 4214 4.472470 CAGAGGGCATGGATAAGGATATGA 59.528 45.833 0.00 0.00 0.00 2.15
3571 4219 1.770658 CACAGAGGGCATGGATAAGGA 59.229 52.381 0.00 0.00 0.00 3.36
3579 4227 2.357009 GCACTAATTCACAGAGGGCATG 59.643 50.000 0.00 0.00 0.00 4.06
3581 4229 1.630369 AGCACTAATTCACAGAGGGCA 59.370 47.619 2.42 0.00 0.00 5.36
3600 4248 5.945784 TGTCAAATCCTCCAGAAATTACCAG 59.054 40.000 0.00 0.00 0.00 4.00
3602 4250 5.163612 GCTGTCAAATCCTCCAGAAATTACC 60.164 44.000 0.00 0.00 0.00 2.85
3606 4254 4.313020 AGCTGTCAAATCCTCCAGAAAT 57.687 40.909 0.00 0.00 0.00 2.17
3705 4353 4.452455 AGAAACTTCATTCGTGCTTACCTG 59.548 41.667 0.00 0.00 34.46 4.00
3715 4363 4.686091 TGAGTACTGCAGAAACTTCATTCG 59.314 41.667 23.35 0.00 34.46 3.34
3740 4388 1.191944 CTGTGCGCAGTACTACATCG 58.808 55.000 19.30 0.00 45.46 3.84
3787 4435 4.651503 GGAAGTTCCAGATCCAGATACAGA 59.348 45.833 17.44 0.00 36.28 3.41
3788 4436 4.406972 TGGAAGTTCCAGATCCAGATACAG 59.593 45.833 21.05 0.00 42.67 2.74
3789 4437 4.361783 TGGAAGTTCCAGATCCAGATACA 58.638 43.478 21.05 0.00 42.67 2.29
3810 4458 8.190784 AGAAAATAAAACTGAACTGGAACTGTG 58.809 33.333 0.00 0.00 41.30 3.66
3840 4490 8.934023 AAAGAGGATGTTAAACTCAAATGGTA 57.066 30.769 0.00 0.00 33.76 3.25
3841 4491 7.839680 AAAGAGGATGTTAAACTCAAATGGT 57.160 32.000 0.00 0.00 33.76 3.55
3854 4504 8.868522 TGAATCATAAGTGAAAAGAGGATGTT 57.131 30.769 0.00 0.00 38.01 2.71
3861 4511 7.309377 CCTTTGCCTGAATCATAAGTGAAAAGA 60.309 37.037 0.00 0.00 38.01 2.52
3873 4523 0.405198 TCCAGCCTTTGCCTGAATCA 59.595 50.000 0.00 0.00 38.69 2.57
3923 4573 0.179181 CATGCAAAGTAGGCAGCACG 60.179 55.000 0.00 0.00 45.68 5.34
4109 4759 4.342378 GGTGCTGTGAAGGATGAGTATAGA 59.658 45.833 0.00 0.00 0.00 1.98
4139 4790 5.335127 CAAGACAAAATGGGAACGATCATC 58.665 41.667 0.00 0.00 0.00 2.92
4145 4796 2.791383 TGCAAGACAAAATGGGAACG 57.209 45.000 0.00 0.00 0.00 3.95
4146 4797 5.170748 CCTAATGCAAGACAAAATGGGAAC 58.829 41.667 0.00 0.00 0.00 3.62
4154 4806 4.713553 TCTGTCACCTAATGCAAGACAAA 58.286 39.130 0.00 0.00 38.58 2.83
4213 4865 0.537188 GAATCTCTTCGGCTCCACCA 59.463 55.000 0.00 0.00 39.03 4.17
4247 4899 7.252612 TGGTATACCTCTCAAAGTCATTCAA 57.747 36.000 22.41 0.00 36.82 2.69
4267 4919 8.941995 ACTATAATTGAGTAGAGCTGATGGTA 57.058 34.615 0.00 0.00 0.00 3.25
4268 4920 7.308891 CGACTATAATTGAGTAGAGCTGATGGT 60.309 40.741 0.00 0.00 0.00 3.55
4269 4921 7.026562 CGACTATAATTGAGTAGAGCTGATGG 58.973 42.308 0.00 0.00 0.00 3.51
4320 4973 4.287766 AGCGATTACTTTGGGAAAGACT 57.712 40.909 3.11 0.00 41.02 3.24
4406 5059 0.389948 ATGAACGACACGCCCTTCTC 60.390 55.000 0.00 0.00 0.00 2.87
4677 5615 2.035626 CAATGGAACCCGGTGGCT 59.964 61.111 0.00 0.00 33.59 4.75
4680 5618 1.002134 AGCTCAATGGAACCCGGTG 60.002 57.895 0.00 0.00 0.00 4.94
4683 5621 0.250234 TCTGAGCTCAATGGAACCCG 59.750 55.000 18.85 2.53 0.00 5.28
4721 5659 9.232082 CAGAAAATTGTGTAACTTCGATTTTCA 57.768 29.630 21.78 1.02 40.52 2.69
4729 5667 8.342634 TGAGCTTACAGAAAATTGTGTAACTTC 58.657 33.333 10.72 11.11 40.57 3.01
4748 5686 7.218228 TGCATTTTTCAAGAATCTGAGCTTA 57.782 32.000 0.00 0.00 0.00 3.09
4878 5817 7.602265 CCAAATTTATCCGGTTTTGAGAATTGT 59.398 33.333 0.00 0.00 32.17 2.71
4993 5935 5.310451 ACGGGCTCTAGTAAATTTTTGTCA 58.690 37.500 0.00 0.00 0.00 3.58
5327 6280 4.721132 TCAAAACCGGATAAGTTTGGTCT 58.279 39.130 9.46 0.00 37.50 3.85
5522 6529 5.164620 TGATATGAGCTCCACACAGAAAA 57.835 39.130 12.15 0.00 0.00 2.29
5526 6533 4.201753 CGTTTTGATATGAGCTCCACACAG 60.202 45.833 12.15 0.00 0.00 3.66
5528 6535 3.684788 ACGTTTTGATATGAGCTCCACAC 59.315 43.478 12.15 1.23 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.