Multiple sequence alignment - TraesCS5D01G417500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G417500 chr5D 100.000 3589 0 0 1 3589 479621627 479618039 0.000000e+00 6628.0
1 TraesCS5D01G417500 chr5D 90.411 73 6 1 1719 1791 479619693 479619622 1.060000e-15 95.3
2 TraesCS5D01G417500 chr5D 90.411 73 6 1 1935 2006 479619909 479619837 1.060000e-15 95.3
3 TraesCS5D01G417500 chr5D 88.406 69 7 1 2328 2395 479619253 479619185 8.260000e-12 82.4
4 TraesCS5D01G417500 chr5A 97.073 1640 41 2 1067 2706 598307817 598306185 0.000000e+00 2756.0
5 TraesCS5D01G417500 chr5A 97.688 346 7 1 2739 3084 598306186 598305842 8.580000e-166 593.0
6 TraesCS5D01G417500 chr5A 93.593 359 9 3 641 999 598330899 598330555 1.140000e-144 523.0
7 TraesCS5D01G417500 chr5A 97.917 288 6 0 3079 3366 598305715 598305428 1.920000e-137 499.0
8 TraesCS5D01G417500 chr5A 95.133 226 11 0 3364 3589 598302212 598301987 1.230000e-94 357.0
9 TraesCS5D01G417500 chr5A 88.525 61 7 0 2335 2395 598306508 598306448 1.380000e-09 75.0
10 TraesCS5D01G417500 chr6A 95.070 933 35 5 2638 3564 93910638 93909711 0.000000e+00 1458.0
11 TraesCS5D01G417500 chr6A 91.254 869 72 4 2725 3589 172129131 172128263 0.000000e+00 1181.0
12 TraesCS5D01G417500 chr6D 92.060 869 65 4 2725 3589 133224268 133223400 0.000000e+00 1219.0
13 TraesCS5D01G417500 chr6B 91.264 870 71 5 2725 3589 231680559 231679690 0.000000e+00 1181.0
14 TraesCS5D01G417500 chr1B 89.158 950 53 24 1675 2604 689221365 689222284 0.000000e+00 1138.0
15 TraesCS5D01G417500 chr1B 93.195 676 26 3 999 1674 689205313 689205968 0.000000e+00 976.0
16 TraesCS5D01G417500 chr1B 94.157 599 30 2 401 999 689204116 689204709 0.000000e+00 907.0
17 TraesCS5D01G417500 chr1B 81.030 369 46 15 1110 1457 688384133 688383768 4.570000e-69 272.0
18 TraesCS5D01G417500 chr1B 91.192 193 10 3 2412 2604 688383335 688383150 4.600000e-64 255.0
19 TraesCS5D01G417500 chr1B 84.388 237 28 3 1233 1469 688285950 688285723 1.300000e-54 224.0
20 TraesCS5D01G417500 chr1B 100.000 28 0 0 1091 1118 688384212 688384185 6.000000e-03 52.8
21 TraesCS5D01G417500 chr1D 95.987 598 19 4 401 998 495420982 495420390 0.000000e+00 966.0
22 TraesCS5D01G417500 chr1D 85.486 627 10 33 2037 2604 495419243 495418639 2.400000e-161 579.0
23 TraesCS5D01G417500 chr1D 86.511 556 2 16 1047 1576 495420071 495419563 8.760000e-151 544.0
24 TraesCS5D01G417500 chr1D 82.432 370 29 14 1763 2119 495251760 495251414 1.260000e-74 291.0
25 TraesCS5D01G417500 chr1D 90.476 210 17 1 1233 1439 495231453 495231244 1.270000e-69 274.0
26 TraesCS5D01G417500 chr1D 93.827 162 1 3 1705 1857 495419499 495419338 5.990000e-58 235.0
27 TraesCS5D01G417500 chr1D 79.096 354 35 19 2268 2604 495247410 495247079 1.310000e-49 207.0
28 TraesCS5D01G417500 chr1D 79.096 354 35 19 2268 2604 495248668 495248337 1.310000e-49 207.0
29 TraesCS5D01G417500 chr1D 79.096 354 35 19 2268 2604 495249913 495249582 1.310000e-49 207.0
30 TraesCS5D01G417500 chr1D 92.958 142 2 2 1895 2028 495419341 495419200 2.190000e-47 200.0
31 TraesCS5D01G417500 chr1D 84.545 220 10 9 2402 2604 495241463 495241251 2.830000e-46 196.0
32 TraesCS5D01G417500 chr1D 84.524 168 11 7 1961 2119 495246582 495246421 6.210000e-33 152.0
33 TraesCS5D01G417500 chr1D 84.524 168 11 7 1961 2119 495247840 495247679 6.210000e-33 152.0
34 TraesCS5D01G417500 chr1D 84.524 168 11 7 1961 2119 495249085 495248924 6.210000e-33 152.0
35 TraesCS5D01G417500 chr1D 84.524 168 11 7 1961 2119 495250330 495250169 6.210000e-33 152.0
36 TraesCS5D01G417500 chr1D 92.233 103 8 0 2148 2250 495246242 495246140 2.890000e-31 147.0
37 TraesCS5D01G417500 chr1D 92.233 103 8 0 2148 2250 495251248 495251146 2.890000e-31 147.0
38 TraesCS5D01G417500 chr1D 91.262 103 9 0 2148 2250 495247500 495247398 1.340000e-29 141.0
39 TraesCS5D01G417500 chr1D 91.262 103 9 0 2148 2250 495248758 495248656 1.340000e-29 141.0
40 TraesCS5D01G417500 chr1D 91.262 103 9 0 2148 2250 495250003 495249901 1.340000e-29 141.0
41 TraesCS5D01G417500 chr1D 90.588 85 4 1 1595 1675 495419573 495419489 3.790000e-20 110.0
42 TraesCS5D01G417500 chr1D 88.158 76 4 3 1720 1791 495419296 495419222 6.380000e-13 86.1
43 TraesCS5D01G417500 chr1D 89.362 47 2 1 1740 1786 495223716 495223673 5.010000e-04 56.5
44 TraesCS5D01G417500 chr1D 89.362 47 2 1 1740 1786 495224123 495224080 5.010000e-04 56.5
45 TraesCS5D01G417500 chr7B 88.696 345 28 7 1 336 92276637 92276979 9.270000e-111 411.0
46 TraesCS5D01G417500 chr1A 87.660 235 26 1 1233 1464 593551557 593551323 1.640000e-68 270.0
47 TraesCS5D01G417500 chr1A 86.017 236 14 11 2381 2604 593752558 593752786 5.990000e-58 235.0
48 TraesCS5D01G417500 chr1A 87.778 90 5 3 2036 2119 593752122 593752211 2.280000e-17 100.0
49 TraesCS5D01G417500 chr4B 76.190 126 22 7 633 754 85597377 85597498 3.870000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G417500 chr5D 479618039 479621627 3588 True 1725.250000 6628 92.307000 1 3589 4 chr5D.!!$R1 3588
1 TraesCS5D01G417500 chr5A 598301987 598307817 5830 True 856.000000 2756 95.267200 1067 3589 5 chr5A.!!$R2 2522
2 TraesCS5D01G417500 chr6A 93909711 93910638 927 True 1458.000000 1458 95.070000 2638 3564 1 chr6A.!!$R1 926
3 TraesCS5D01G417500 chr6A 172128263 172129131 868 True 1181.000000 1181 91.254000 2725 3589 1 chr6A.!!$R2 864
4 TraesCS5D01G417500 chr6D 133223400 133224268 868 True 1219.000000 1219 92.060000 2725 3589 1 chr6D.!!$R1 864
5 TraesCS5D01G417500 chr6B 231679690 231680559 869 True 1181.000000 1181 91.264000 2725 3589 1 chr6B.!!$R1 864
6 TraesCS5D01G417500 chr1B 689221365 689222284 919 False 1138.000000 1138 89.158000 1675 2604 1 chr1B.!!$F1 929
7 TraesCS5D01G417500 chr1B 689204116 689205968 1852 False 941.500000 976 93.676000 401 1674 2 chr1B.!!$F2 1273
8 TraesCS5D01G417500 chr1D 495418639 495420982 2343 True 388.585714 966 90.502143 401 2604 7 chr1D.!!$R5 2203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.178995 TCAGGTTCACCATGCTTGCA 60.179 50.0 0.00 0.00 38.89 4.08 F
153 154 0.245266 TCACCATGCTTGCATTGCAG 59.755 50.0 17.65 7.48 44.04 4.41 F
154 155 0.245266 CACCATGCTTGCATTGCAGA 59.755 50.0 17.65 0.61 44.04 4.26 F
1884 2541 0.247736 AGCAGAGCCTCGTAAGGTTG 59.752 55.0 0.00 0.00 45.34 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2047 2712 0.252479 AGTTGGAGGATGCTCTGCTG 59.748 55.0 14.4 0.00 0.00 4.41 R
2049 2714 0.463474 GGAGTTGGAGGATGCTCTGC 60.463 60.0 14.4 4.86 0.00 4.26 R
2050 2715 0.907486 TGGAGTTGGAGGATGCTCTG 59.093 55.0 14.4 0.00 0.00 3.35 R
2706 3441 0.105453 TCAGATACCTGGAGGGAGGC 60.105 60.0 0.0 0.00 40.76 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.570234 TTTTTCCATCCCTATAAACACGC 57.430 39.130 0.00 0.00 0.00 5.34
42 43 3.916359 TTCCATCCCTATAAACACGCA 57.084 42.857 0.00 0.00 0.00 5.24
43 44 3.916359 TCCATCCCTATAAACACGCAA 57.084 42.857 0.00 0.00 0.00 4.85
44 45 4.223556 TCCATCCCTATAAACACGCAAA 57.776 40.909 0.00 0.00 0.00 3.68
45 46 4.590918 TCCATCCCTATAAACACGCAAAA 58.409 39.130 0.00 0.00 0.00 2.44
46 47 4.396790 TCCATCCCTATAAACACGCAAAAC 59.603 41.667 0.00 0.00 0.00 2.43
47 48 4.439563 CCATCCCTATAAACACGCAAAACC 60.440 45.833 0.00 0.00 0.00 3.27
48 49 3.752665 TCCCTATAAACACGCAAAACCA 58.247 40.909 0.00 0.00 0.00 3.67
49 50 4.142790 TCCCTATAAACACGCAAAACCAA 58.857 39.130 0.00 0.00 0.00 3.67
50 51 4.767928 TCCCTATAAACACGCAAAACCAAT 59.232 37.500 0.00 0.00 0.00 3.16
51 52 5.099575 CCCTATAAACACGCAAAACCAATC 58.900 41.667 0.00 0.00 0.00 2.67
52 53 5.336055 CCCTATAAACACGCAAAACCAATCA 60.336 40.000 0.00 0.00 0.00 2.57
53 54 6.153067 CCTATAAACACGCAAAACCAATCAA 58.847 36.000 0.00 0.00 0.00 2.57
54 55 6.811170 CCTATAAACACGCAAAACCAATCAAT 59.189 34.615 0.00 0.00 0.00 2.57
55 56 7.330700 CCTATAAACACGCAAAACCAATCAATT 59.669 33.333 0.00 0.00 0.00 2.32
56 57 5.809719 AAACACGCAAAACCAATCAATTT 57.190 30.435 0.00 0.00 0.00 1.82
57 58 6.910536 AAACACGCAAAACCAATCAATTTA 57.089 29.167 0.00 0.00 0.00 1.40
58 59 5.898630 ACACGCAAAACCAATCAATTTAC 57.101 34.783 0.00 0.00 0.00 2.01
59 60 5.352284 ACACGCAAAACCAATCAATTTACA 58.648 33.333 0.00 0.00 0.00 2.41
60 61 5.988561 ACACGCAAAACCAATCAATTTACAT 59.011 32.000 0.00 0.00 0.00 2.29
61 62 6.073873 ACACGCAAAACCAATCAATTTACATG 60.074 34.615 0.00 0.00 0.00 3.21
62 63 5.988561 ACGCAAAACCAATCAATTTACATGT 59.011 32.000 2.69 2.69 0.00 3.21
63 64 7.115520 CACGCAAAACCAATCAATTTACATGTA 59.884 33.333 0.08 0.08 0.00 2.29
64 65 7.328249 ACGCAAAACCAATCAATTTACATGTAG 59.672 33.333 5.56 0.00 0.00 2.74
65 66 7.328249 CGCAAAACCAATCAATTTACATGTAGT 59.672 33.333 5.56 0.00 0.00 2.73
66 67 8.647226 GCAAAACCAATCAATTTACATGTAGTC 58.353 33.333 5.56 0.00 0.00 2.59
67 68 9.139174 CAAAACCAATCAATTTACATGTAGTCC 57.861 33.333 5.56 0.00 0.00 3.85
68 69 6.677781 ACCAATCAATTTACATGTAGTCCG 57.322 37.500 5.56 0.00 0.00 4.79
69 70 5.065988 ACCAATCAATTTACATGTAGTCCGC 59.934 40.000 5.56 0.00 0.00 5.54
70 71 5.065859 CCAATCAATTTACATGTAGTCCGCA 59.934 40.000 5.56 0.00 0.00 5.69
71 72 6.238731 CCAATCAATTTACATGTAGTCCGCAT 60.239 38.462 5.56 0.00 0.00 4.73
72 73 5.733226 TCAATTTACATGTAGTCCGCATG 57.267 39.130 5.56 4.02 46.51 4.06
73 74 4.035091 TCAATTTACATGTAGTCCGCATGC 59.965 41.667 7.91 7.91 45.40 4.06
74 75 2.979814 TTACATGTAGTCCGCATGCT 57.020 45.000 17.13 0.00 45.40 3.79
75 76 4.394439 TTTACATGTAGTCCGCATGCTA 57.606 40.909 17.13 0.06 45.40 3.49
76 77 2.225068 ACATGTAGTCCGCATGCTAC 57.775 50.000 17.13 13.66 45.40 3.58
78 79 2.093711 ACATGTAGTCCGCATGCTACAA 60.094 45.455 18.09 6.96 46.89 2.41
79 80 2.753055 TGTAGTCCGCATGCTACAAA 57.247 45.000 17.13 3.86 42.90 2.83
80 81 3.260475 TGTAGTCCGCATGCTACAAAT 57.740 42.857 17.13 0.00 42.90 2.32
81 82 2.935849 TGTAGTCCGCATGCTACAAATG 59.064 45.455 17.13 0.00 42.90 2.32
82 83 0.734889 AGTCCGCATGCTACAAATGC 59.265 50.000 17.13 0.00 45.62 3.56
88 89 3.000523 CCGCATGCTACAAATGCAATTTC 59.999 43.478 17.13 0.00 44.81 2.17
89 90 3.613299 CGCATGCTACAAATGCAATTTCA 59.387 39.130 17.13 0.00 44.81 2.69
90 91 4.269123 CGCATGCTACAAATGCAATTTCAT 59.731 37.500 17.13 0.00 44.81 2.57
91 92 5.220510 CGCATGCTACAAATGCAATTTCATT 60.221 36.000 17.13 0.00 44.81 2.57
92 93 6.019720 CGCATGCTACAAATGCAATTTCATTA 60.020 34.615 17.13 0.00 44.81 1.90
93 94 7.121272 GCATGCTACAAATGCAATTTCATTAC 58.879 34.615 11.37 0.00 44.81 1.89
94 95 7.010738 GCATGCTACAAATGCAATTTCATTACT 59.989 33.333 11.37 0.00 44.81 2.24
95 96 9.518906 CATGCTACAAATGCAATTTCATTACTA 57.481 29.630 3.69 0.00 44.81 1.82
96 97 8.909708 TGCTACAAATGCAATTTCATTACTAC 57.090 30.769 3.69 0.00 44.81 2.73
97 98 8.518702 TGCTACAAATGCAATTTCATTACTACA 58.481 29.630 3.69 0.00 44.81 2.74
98 99 9.352784 GCTACAAATGCAATTTCATTACTACAA 57.647 29.630 3.69 0.00 44.81 2.41
101 102 9.539825 ACAAATGCAATTTCATTACTACAAACA 57.460 25.926 3.69 0.00 44.81 2.83
103 104 9.979578 AAATGCAATTTCATTACTACAAACAGA 57.020 25.926 3.69 0.00 44.81 3.41
104 105 8.970691 ATGCAATTTCATTACTACAAACAGAC 57.029 30.769 0.00 0.00 0.00 3.51
105 106 7.935520 TGCAATTTCATTACTACAAACAGACA 58.064 30.769 0.00 0.00 0.00 3.41
106 107 8.075574 TGCAATTTCATTACTACAAACAGACAG 58.924 33.333 0.00 0.00 0.00 3.51
107 108 7.538678 GCAATTTCATTACTACAAACAGACAGG 59.461 37.037 0.00 0.00 0.00 4.00
108 109 6.554334 TTTCATTACTACAAACAGACAGGC 57.446 37.500 0.00 0.00 0.00 4.85
109 110 5.222079 TCATTACTACAAACAGACAGGCA 57.778 39.130 0.00 0.00 0.00 4.75
110 111 4.994852 TCATTACTACAAACAGACAGGCAC 59.005 41.667 0.00 0.00 0.00 5.01
111 112 4.409718 TTACTACAAACAGACAGGCACA 57.590 40.909 0.00 0.00 0.00 4.57
112 113 3.492102 ACTACAAACAGACAGGCACAT 57.508 42.857 0.00 0.00 0.00 3.21
113 114 4.617253 ACTACAAACAGACAGGCACATA 57.383 40.909 0.00 0.00 0.00 2.29
114 115 5.165961 ACTACAAACAGACAGGCACATAT 57.834 39.130 0.00 0.00 0.00 1.78
115 116 4.937620 ACTACAAACAGACAGGCACATATG 59.062 41.667 0.00 0.00 0.00 1.78
116 117 3.084039 ACAAACAGACAGGCACATATGG 58.916 45.455 7.80 0.00 0.00 2.74
117 118 3.084039 CAAACAGACAGGCACATATGGT 58.916 45.455 7.80 0.00 0.00 3.55
130 131 4.365514 ACATATGGTGTGGTTCAAGTCA 57.634 40.909 7.80 0.00 40.28 3.41
131 132 4.326826 ACATATGGTGTGGTTCAAGTCAG 58.673 43.478 7.80 0.00 40.28 3.51
132 133 2.276732 ATGGTGTGGTTCAAGTCAGG 57.723 50.000 0.00 0.00 0.00 3.86
133 134 0.916086 TGGTGTGGTTCAAGTCAGGT 59.084 50.000 0.00 0.00 0.00 4.00
134 135 1.283613 TGGTGTGGTTCAAGTCAGGTT 59.716 47.619 0.00 0.00 0.00 3.50
135 136 1.947456 GGTGTGGTTCAAGTCAGGTTC 59.053 52.381 0.00 0.00 0.00 3.62
136 137 2.639065 GTGTGGTTCAAGTCAGGTTCA 58.361 47.619 0.00 0.00 0.00 3.18
137 138 2.354821 GTGTGGTTCAAGTCAGGTTCAC 59.645 50.000 0.00 0.00 0.00 3.18
138 139 1.947456 GTGGTTCAAGTCAGGTTCACC 59.053 52.381 0.00 0.00 0.00 4.02
139 140 1.562008 TGGTTCAAGTCAGGTTCACCA 59.438 47.619 0.00 0.00 38.89 4.17
140 141 2.174639 TGGTTCAAGTCAGGTTCACCAT 59.825 45.455 0.00 0.00 38.89 3.55
141 142 2.554032 GGTTCAAGTCAGGTTCACCATG 59.446 50.000 0.00 0.00 38.89 3.66
142 143 1.896220 TCAAGTCAGGTTCACCATGC 58.104 50.000 0.00 0.00 38.89 4.06
143 144 1.421268 TCAAGTCAGGTTCACCATGCT 59.579 47.619 0.00 0.00 38.89 3.79
144 145 2.158623 TCAAGTCAGGTTCACCATGCTT 60.159 45.455 0.00 0.00 38.89 3.91
145 146 1.901591 AGTCAGGTTCACCATGCTTG 58.098 50.000 0.00 0.00 38.89 4.01
146 147 0.242017 GTCAGGTTCACCATGCTTGC 59.758 55.000 0.00 0.00 38.89 4.01
147 148 0.178995 TCAGGTTCACCATGCTTGCA 60.179 50.000 0.00 0.00 38.89 4.08
148 149 0.892755 CAGGTTCACCATGCTTGCAT 59.107 50.000 1.81 1.81 38.89 3.96
149 150 1.274167 CAGGTTCACCATGCTTGCATT 59.726 47.619 5.24 0.00 38.89 3.56
150 151 1.274167 AGGTTCACCATGCTTGCATTG 59.726 47.619 5.24 5.28 38.89 2.82
151 152 1.073177 GTTCACCATGCTTGCATTGC 58.927 50.000 5.24 0.46 0.00 3.56
152 153 0.680061 TTCACCATGCTTGCATTGCA 59.320 45.000 15.59 15.59 44.95 4.08
153 154 0.245266 TCACCATGCTTGCATTGCAG 59.755 50.000 17.65 7.48 44.04 4.41
154 155 0.245266 CACCATGCTTGCATTGCAGA 59.755 50.000 17.65 0.61 44.04 4.26
155 156 0.530744 ACCATGCTTGCATTGCAGAG 59.469 50.000 17.65 12.67 44.04 3.35
156 157 0.530744 CCATGCTTGCATTGCAGAGT 59.469 50.000 17.65 1.97 44.04 3.24
157 158 1.629013 CATGCTTGCATTGCAGAGTG 58.371 50.000 17.65 9.50 44.04 3.51
158 159 1.201414 CATGCTTGCATTGCAGAGTGA 59.799 47.619 17.65 0.00 44.04 3.41
159 160 1.320507 TGCTTGCATTGCAGAGTGAA 58.679 45.000 11.76 0.00 40.61 3.18
160 161 1.268625 TGCTTGCATTGCAGAGTGAAG 59.731 47.619 11.76 6.43 40.61 3.02
161 162 1.268899 GCTTGCATTGCAGAGTGAAGT 59.731 47.619 11.76 0.00 40.61 3.01
162 163 2.921069 GCTTGCATTGCAGAGTGAAGTG 60.921 50.000 11.76 0.00 40.61 3.16
163 164 0.594602 TGCATTGCAGAGTGAAGTGC 59.405 50.000 7.38 0.00 40.29 4.40
168 169 1.241165 TGCAGAGTGAAGTGCAATGG 58.759 50.000 0.00 0.00 46.53 3.16
169 170 1.202794 TGCAGAGTGAAGTGCAATGGA 60.203 47.619 0.00 0.00 46.53 3.41
170 171 1.881973 GCAGAGTGAAGTGCAATGGAA 59.118 47.619 0.00 0.00 39.62 3.53
171 172 2.095364 GCAGAGTGAAGTGCAATGGAAG 60.095 50.000 0.00 0.00 39.62 3.46
172 173 2.095364 CAGAGTGAAGTGCAATGGAAGC 60.095 50.000 0.00 0.00 0.00 3.86
173 174 1.200948 GAGTGAAGTGCAATGGAAGCC 59.799 52.381 0.00 0.00 0.00 4.35
174 175 0.961019 GTGAAGTGCAATGGAAGCCA 59.039 50.000 0.00 0.00 38.19 4.75
176 177 1.546923 TGAAGTGCAATGGAAGCCATG 59.453 47.619 0.00 0.00 44.40 3.66
177 178 1.547372 GAAGTGCAATGGAAGCCATGT 59.453 47.619 0.00 0.00 44.40 3.21
178 179 1.180029 AGTGCAATGGAAGCCATGTC 58.820 50.000 0.00 0.00 44.40 3.06
179 180 0.889994 GTGCAATGGAAGCCATGTCA 59.110 50.000 0.00 0.00 44.40 3.58
180 181 1.135199 GTGCAATGGAAGCCATGTCAG 60.135 52.381 0.00 0.00 44.40 3.51
181 182 0.458669 GCAATGGAAGCCATGTCAGG 59.541 55.000 0.00 0.00 44.40 3.86
182 183 1.843368 CAATGGAAGCCATGTCAGGT 58.157 50.000 0.00 0.00 44.40 4.00
183 184 2.173519 CAATGGAAGCCATGTCAGGTT 58.826 47.619 0.00 0.00 44.40 3.50
184 185 2.564062 CAATGGAAGCCATGTCAGGTTT 59.436 45.455 0.00 0.00 44.40 3.27
185 186 1.619654 TGGAAGCCATGTCAGGTTTG 58.380 50.000 0.00 0.00 31.78 2.93
186 187 1.144708 TGGAAGCCATGTCAGGTTTGA 59.855 47.619 0.00 0.00 31.78 2.69
187 188 2.238521 GGAAGCCATGTCAGGTTTGAA 58.761 47.619 0.00 0.00 34.49 2.69
188 189 2.029918 GGAAGCCATGTCAGGTTTGAAC 60.030 50.000 0.00 0.00 34.49 3.18
189 190 2.363306 AGCCATGTCAGGTTTGAACA 57.637 45.000 0.00 0.00 34.49 3.18
190 191 2.880443 AGCCATGTCAGGTTTGAACAT 58.120 42.857 0.00 0.00 34.49 2.71
191 192 2.559668 AGCCATGTCAGGTTTGAACATG 59.440 45.455 7.55 7.55 41.69 3.21
192 193 2.927871 GCCATGTCAGGTTTGAACATGC 60.928 50.000 8.77 1.05 40.26 4.06
193 194 2.296752 CCATGTCAGGTTTGAACATGCA 59.703 45.455 8.77 6.03 40.26 3.96
194 195 3.571571 CATGTCAGGTTTGAACATGCAG 58.428 45.455 3.81 0.00 40.26 4.41
195 196 1.955778 TGTCAGGTTTGAACATGCAGG 59.044 47.619 0.00 0.00 40.26 4.85
196 197 2.229792 GTCAGGTTTGAACATGCAGGA 58.770 47.619 4.84 0.00 40.26 3.86
197 198 2.622942 GTCAGGTTTGAACATGCAGGAA 59.377 45.455 4.84 0.00 40.26 3.36
198 199 3.068024 GTCAGGTTTGAACATGCAGGAAA 59.932 43.478 4.84 0.00 40.26 3.13
199 200 3.068024 TCAGGTTTGAACATGCAGGAAAC 59.932 43.478 4.84 5.45 40.26 2.78
200 201 3.030291 AGGTTTGAACATGCAGGAAACA 58.970 40.909 4.84 0.00 0.00 2.83
201 202 3.450457 AGGTTTGAACATGCAGGAAACAA 59.550 39.130 4.84 5.49 0.00 2.83
202 203 3.803778 GGTTTGAACATGCAGGAAACAAG 59.196 43.478 4.84 0.00 0.00 3.16
203 204 4.432712 GTTTGAACATGCAGGAAACAAGT 58.567 39.130 4.84 0.00 0.00 3.16
204 205 5.451242 GGTTTGAACATGCAGGAAACAAGTA 60.451 40.000 4.84 0.00 0.00 2.24
205 206 6.215845 GTTTGAACATGCAGGAAACAAGTAT 58.784 36.000 4.84 0.00 0.00 2.12
206 207 5.627499 TGAACATGCAGGAAACAAGTATC 57.373 39.130 4.84 0.00 0.00 2.24
207 208 4.458989 TGAACATGCAGGAAACAAGTATCC 59.541 41.667 4.84 0.00 35.88 2.59
208 209 3.356290 ACATGCAGGAAACAAGTATCCC 58.644 45.455 4.84 0.00 36.31 3.85
209 210 3.010584 ACATGCAGGAAACAAGTATCCCT 59.989 43.478 4.84 0.00 36.31 4.20
210 211 4.227300 ACATGCAGGAAACAAGTATCCCTA 59.773 41.667 4.84 0.00 36.31 3.53
211 212 5.103940 ACATGCAGGAAACAAGTATCCCTAT 60.104 40.000 4.84 0.00 36.31 2.57
212 213 5.036117 TGCAGGAAACAAGTATCCCTATC 57.964 43.478 0.00 0.00 36.31 2.08
213 214 4.058817 GCAGGAAACAAGTATCCCTATCG 58.941 47.826 0.00 0.00 36.31 2.92
214 215 4.202223 GCAGGAAACAAGTATCCCTATCGA 60.202 45.833 0.00 0.00 36.31 3.59
215 216 5.290386 CAGGAAACAAGTATCCCTATCGAC 58.710 45.833 0.00 0.00 36.31 4.20
216 217 4.960469 AGGAAACAAGTATCCCTATCGACA 59.040 41.667 0.00 0.00 36.31 4.35
217 218 5.048507 GGAAACAAGTATCCCTATCGACAC 58.951 45.833 0.00 0.00 0.00 3.67
218 219 5.163437 GGAAACAAGTATCCCTATCGACACT 60.163 44.000 0.00 0.00 0.00 3.55
219 220 6.040166 GGAAACAAGTATCCCTATCGACACTA 59.960 42.308 0.00 0.00 0.00 2.74
220 221 6.388435 AACAAGTATCCCTATCGACACTAC 57.612 41.667 0.00 0.00 0.00 2.73
221 222 4.826183 ACAAGTATCCCTATCGACACTACC 59.174 45.833 0.00 0.00 0.00 3.18
222 223 4.997545 AGTATCCCTATCGACACTACCT 57.002 45.455 0.00 0.00 0.00 3.08
223 224 4.653868 AGTATCCCTATCGACACTACCTG 58.346 47.826 0.00 0.00 0.00 4.00
224 225 1.688772 TCCCTATCGACACTACCTGC 58.311 55.000 0.00 0.00 0.00 4.85
225 226 1.214673 TCCCTATCGACACTACCTGCT 59.785 52.381 0.00 0.00 0.00 4.24
226 227 2.440627 TCCCTATCGACACTACCTGCTA 59.559 50.000 0.00 0.00 0.00 3.49
227 228 2.553172 CCCTATCGACACTACCTGCTAC 59.447 54.545 0.00 0.00 0.00 3.58
228 229 3.478509 CCTATCGACACTACCTGCTACT 58.521 50.000 0.00 0.00 0.00 2.57
229 230 3.499157 CCTATCGACACTACCTGCTACTC 59.501 52.174 0.00 0.00 0.00 2.59
230 231 1.747709 TCGACACTACCTGCTACTCC 58.252 55.000 0.00 0.00 0.00 3.85
231 232 0.739561 CGACACTACCTGCTACTCCC 59.260 60.000 0.00 0.00 0.00 4.30
232 233 1.112950 GACACTACCTGCTACTCCCC 58.887 60.000 0.00 0.00 0.00 4.81
233 234 0.711184 ACACTACCTGCTACTCCCCT 59.289 55.000 0.00 0.00 0.00 4.79
234 235 1.115467 CACTACCTGCTACTCCCCTG 58.885 60.000 0.00 0.00 0.00 4.45
235 236 0.711184 ACTACCTGCTACTCCCCTGT 59.289 55.000 0.00 0.00 0.00 4.00
236 237 1.115467 CTACCTGCTACTCCCCTGTG 58.885 60.000 0.00 0.00 0.00 3.66
237 238 0.708209 TACCTGCTACTCCCCTGTGA 59.292 55.000 0.00 0.00 0.00 3.58
238 239 0.616111 ACCTGCTACTCCCCTGTGAG 60.616 60.000 0.00 0.00 38.37 3.51
239 240 0.324738 CCTGCTACTCCCCTGTGAGA 60.325 60.000 0.00 0.00 36.22 3.27
240 241 1.561643 CTGCTACTCCCCTGTGAGAA 58.438 55.000 0.00 0.00 36.22 2.87
241 242 1.902508 CTGCTACTCCCCTGTGAGAAA 59.097 52.381 0.00 0.00 36.22 2.52
242 243 1.902508 TGCTACTCCCCTGTGAGAAAG 59.097 52.381 0.00 0.00 36.22 2.62
243 244 2.180276 GCTACTCCCCTGTGAGAAAGA 58.820 52.381 0.00 0.00 36.22 2.52
244 245 2.167487 GCTACTCCCCTGTGAGAAAGAG 59.833 54.545 0.00 0.00 36.22 2.85
245 246 2.704190 ACTCCCCTGTGAGAAAGAGA 57.296 50.000 0.00 0.00 36.22 3.10
246 247 2.534990 ACTCCCCTGTGAGAAAGAGAG 58.465 52.381 0.00 0.00 36.22 3.20
247 248 2.110899 ACTCCCCTGTGAGAAAGAGAGA 59.889 50.000 0.00 0.00 36.22 3.10
248 249 2.760092 CTCCCCTGTGAGAAAGAGAGAG 59.240 54.545 0.00 0.00 34.11 3.20
249 250 2.380249 TCCCCTGTGAGAAAGAGAGAGA 59.620 50.000 0.00 0.00 0.00 3.10
250 251 3.169099 CCCCTGTGAGAAAGAGAGAGAA 58.831 50.000 0.00 0.00 0.00 2.87
251 252 3.195396 CCCCTGTGAGAAAGAGAGAGAAG 59.805 52.174 0.00 0.00 0.00 2.85
252 253 3.195396 CCCTGTGAGAAAGAGAGAGAAGG 59.805 52.174 0.00 0.00 0.00 3.46
253 254 4.085733 CCTGTGAGAAAGAGAGAGAAGGA 58.914 47.826 0.00 0.00 0.00 3.36
254 255 4.158394 CCTGTGAGAAAGAGAGAGAAGGAG 59.842 50.000 0.00 0.00 0.00 3.69
255 256 4.991776 TGTGAGAAAGAGAGAGAAGGAGA 58.008 43.478 0.00 0.00 0.00 3.71
256 257 5.009631 TGTGAGAAAGAGAGAGAAGGAGAG 58.990 45.833 0.00 0.00 0.00 3.20
257 258 5.222027 TGTGAGAAAGAGAGAGAAGGAGAGA 60.222 44.000 0.00 0.00 0.00 3.10
258 259 5.888161 GTGAGAAAGAGAGAGAAGGAGAGAT 59.112 44.000 0.00 0.00 0.00 2.75
259 260 5.887598 TGAGAAAGAGAGAGAAGGAGAGATG 59.112 44.000 0.00 0.00 0.00 2.90
260 261 5.203528 AGAAAGAGAGAGAAGGAGAGATGG 58.796 45.833 0.00 0.00 0.00 3.51
261 262 4.608170 AAGAGAGAGAAGGAGAGATGGT 57.392 45.455 0.00 0.00 0.00 3.55
262 263 3.902218 AGAGAGAGAAGGAGAGATGGTG 58.098 50.000 0.00 0.00 0.00 4.17
263 264 2.958355 GAGAGAGAAGGAGAGATGGTGG 59.042 54.545 0.00 0.00 0.00 4.61
264 265 1.412343 GAGAGAAGGAGAGATGGTGGC 59.588 57.143 0.00 0.00 0.00 5.01
265 266 1.008206 AGAGAAGGAGAGATGGTGGCT 59.992 52.381 0.00 0.00 0.00 4.75
266 267 1.836802 GAGAAGGAGAGATGGTGGCTT 59.163 52.381 0.00 0.00 0.00 4.35
267 268 3.034635 GAGAAGGAGAGATGGTGGCTTA 58.965 50.000 0.00 0.00 0.00 3.09
268 269 2.769095 AGAAGGAGAGATGGTGGCTTAC 59.231 50.000 0.00 0.00 0.00 2.34
300 301 3.192799 GAGACGACCTCCATCTCCA 57.807 57.895 0.00 0.00 35.87 3.86
301 302 0.741915 GAGACGACCTCCATCTCCAC 59.258 60.000 0.00 0.00 35.87 4.02
302 303 0.684805 AGACGACCTCCATCTCCACC 60.685 60.000 0.00 0.00 0.00 4.61
303 304 1.677637 GACGACCTCCATCTCCACCC 61.678 65.000 0.00 0.00 0.00 4.61
304 305 2.435693 CGACCTCCATCTCCACCCC 61.436 68.421 0.00 0.00 0.00 4.95
305 306 2.042930 ACCTCCATCTCCACCCCC 59.957 66.667 0.00 0.00 0.00 5.40
306 307 2.042762 CCTCCATCTCCACCCCCA 59.957 66.667 0.00 0.00 0.00 4.96
307 308 2.378634 CCTCCATCTCCACCCCCAC 61.379 68.421 0.00 0.00 0.00 4.61
308 309 2.286121 TCCATCTCCACCCCCACC 60.286 66.667 0.00 0.00 0.00 4.61
309 310 2.286425 CCATCTCCACCCCCACCT 60.286 66.667 0.00 0.00 0.00 4.00
310 311 2.378634 CCATCTCCACCCCCACCTC 61.379 68.421 0.00 0.00 0.00 3.85
311 312 2.365635 ATCTCCACCCCCACCTCG 60.366 66.667 0.00 0.00 0.00 4.63
312 313 3.254035 ATCTCCACCCCCACCTCGT 62.254 63.158 0.00 0.00 0.00 4.18
313 314 3.391382 CTCCACCCCCACCTCGTC 61.391 72.222 0.00 0.00 0.00 4.20
334 335 3.191539 GGCCTTCGCGAGCTTCAG 61.192 66.667 18.29 8.86 35.02 3.02
335 336 2.125912 GCCTTCGCGAGCTTCAGA 60.126 61.111 9.59 0.00 0.00 3.27
336 337 1.738099 GCCTTCGCGAGCTTCAGAA 60.738 57.895 9.59 0.00 0.00 3.02
337 338 1.086634 GCCTTCGCGAGCTTCAGAAT 61.087 55.000 9.59 0.00 0.00 2.40
338 339 0.649475 CCTTCGCGAGCTTCAGAATG 59.351 55.000 9.59 0.00 37.54 2.67
353 354 5.725325 TCAGAATGATGGAAATTTGTGCA 57.275 34.783 0.00 0.00 42.56 4.57
354 355 6.288941 TCAGAATGATGGAAATTTGTGCAT 57.711 33.333 0.00 0.00 42.56 3.96
355 356 7.407393 TCAGAATGATGGAAATTTGTGCATA 57.593 32.000 0.00 0.00 42.56 3.14
356 357 7.485810 TCAGAATGATGGAAATTTGTGCATAG 58.514 34.615 0.00 0.00 42.56 2.23
357 358 6.200286 CAGAATGATGGAAATTTGTGCATAGC 59.800 38.462 0.00 0.00 39.69 2.97
358 359 5.864418 ATGATGGAAATTTGTGCATAGCT 57.136 34.783 0.00 0.00 28.49 3.32
359 360 5.664294 TGATGGAAATTTGTGCATAGCTT 57.336 34.783 0.00 0.00 28.49 3.74
360 361 5.653507 TGATGGAAATTTGTGCATAGCTTC 58.346 37.500 0.00 0.00 28.49 3.86
361 362 5.419788 TGATGGAAATTTGTGCATAGCTTCT 59.580 36.000 0.00 0.00 28.49 2.85
362 363 5.726980 TGGAAATTTGTGCATAGCTTCTT 57.273 34.783 0.00 0.00 0.00 2.52
363 364 5.713025 TGGAAATTTGTGCATAGCTTCTTC 58.287 37.500 0.00 0.00 0.00 2.87
364 365 5.477984 TGGAAATTTGTGCATAGCTTCTTCT 59.522 36.000 0.00 0.00 0.00 2.85
365 366 6.032717 GGAAATTTGTGCATAGCTTCTTCTC 58.967 40.000 0.00 0.00 0.00 2.87
366 367 6.349611 GGAAATTTGTGCATAGCTTCTTCTCA 60.350 38.462 0.00 0.00 0.00 3.27
367 368 6.579666 AATTTGTGCATAGCTTCTTCTCAA 57.420 33.333 0.00 0.00 0.00 3.02
368 369 5.618056 TTTGTGCATAGCTTCTTCTCAAG 57.382 39.130 0.00 0.00 0.00 3.02
373 374 2.781300 GCTTCTTCTCAAGCGGCG 59.219 61.111 0.51 0.51 39.55 6.46
374 375 2.781300 CTTCTTCTCAAGCGGCGC 59.219 61.111 26.86 26.86 0.00 6.53
375 376 2.742372 TTCTTCTCAAGCGGCGCC 60.742 61.111 30.40 19.07 0.00 6.53
376 377 3.240134 TTCTTCTCAAGCGGCGCCT 62.240 57.895 30.40 14.31 0.00 5.52
377 378 3.191539 CTTCTCAAGCGGCGCCTC 61.192 66.667 30.40 18.43 0.00 4.70
378 379 3.939837 CTTCTCAAGCGGCGCCTCA 62.940 63.158 30.40 11.38 0.00 3.86
379 380 3.939837 TTCTCAAGCGGCGCCTCAG 62.940 63.158 30.40 20.78 0.00 3.35
399 400 4.028490 TGGCGCCCCAACCACTAG 62.028 66.667 26.77 0.00 38.46 2.57
492 493 4.628333 CGAAAACGCCCTAGATAAAGTCAA 59.372 41.667 0.00 0.00 0.00 3.18
523 524 7.773224 TCCTTTCTTTCACACATTCTCTTTACA 59.227 33.333 0.00 0.00 0.00 2.41
524 525 7.857885 CCTTTCTTTCACACATTCTCTTTACAC 59.142 37.037 0.00 0.00 0.00 2.90
557 558 0.548989 TAACTGGTGCAAGTGGGTGT 59.451 50.000 0.00 0.00 0.00 4.16
605 606 3.256631 AGGTCAATAACGACGTTGGTAGT 59.743 43.478 23.00 0.04 36.73 2.73
623 624 9.538508 GTTGGTAGTTACTTCTAGACTCAAAAA 57.461 33.333 0.00 0.00 0.00 1.94
777 778 7.201565 GGTCTTTTCATTCTACACTATGCAGAC 60.202 40.741 0.00 0.00 0.00 3.51
786 787 6.988522 TCTACACTATGCAGACAAAACACTA 58.011 36.000 0.00 0.00 0.00 2.74
810 811 3.948473 CACGAGGAAGATCTAGAACTCCA 59.052 47.826 16.37 0.00 0.00 3.86
1009 1614 6.839454 AGCTAAGATGGAGTGATGAATCAAT 58.161 36.000 0.00 0.00 38.75 2.57
1035 1640 2.297895 CCCCCACGACCCTCAATCA 61.298 63.158 0.00 0.00 0.00 2.57
1036 1641 1.682849 CCCCACGACCCTCAATCAA 59.317 57.895 0.00 0.00 0.00 2.57
1793 2446 5.220624 GCAACAATCACAATCACAAGCAAAA 60.221 36.000 0.00 0.00 0.00 2.44
1884 2541 0.247736 AGCAGAGCCTCGTAAGGTTG 59.752 55.000 0.00 0.00 45.34 3.77
1996 2661 0.322975 AAGGACGAGCAGCAATCACT 59.677 50.000 0.00 0.00 0.00 3.41
2016 2681 3.755378 ACTAGCAAAGCATTCTCCAACTG 59.245 43.478 0.00 0.00 0.00 3.16
2047 2712 1.505353 CTGGTAAAGCAGCAGCAGC 59.495 57.895 3.17 0.46 45.21 5.25
2048 2713 1.228215 TGGTAAAGCAGCAGCAGCA 60.228 52.632 12.92 0.00 45.49 4.41
2049 2714 1.239296 TGGTAAAGCAGCAGCAGCAG 61.239 55.000 12.92 0.00 45.49 4.24
2143 2808 2.893489 ACAAAGGAGGATCAACAAAGGC 59.107 45.455 0.00 0.00 36.25 4.35
2146 2811 1.032114 GGAGGATCAACAAAGGCCGG 61.032 60.000 0.00 0.00 36.25 6.13
2298 2993 1.754803 CAAGAATGCACAGGCCATCAT 59.245 47.619 5.01 0.00 40.13 2.45
3067 3805 2.395766 ATAAGGGGAAAAGGAGGGGT 57.604 50.000 0.00 0.00 0.00 4.95
3541 7637 2.765135 AGGATCTCCTGTGTGTCTCATG 59.235 50.000 0.00 0.00 46.55 3.07
3582 7678 2.300152 AGAGAAGCCACAGAATCGTGAA 59.700 45.455 6.76 0.00 39.34 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 5.010933 TGCGTGTTTATAGGGATGGAAAAA 58.989 37.500 0.00 0.00 0.00 1.94
20 21 4.590918 TGCGTGTTTATAGGGATGGAAAA 58.409 39.130 0.00 0.00 0.00 2.29
21 22 4.223556 TGCGTGTTTATAGGGATGGAAA 57.776 40.909 0.00 0.00 0.00 3.13
22 23 3.916359 TGCGTGTTTATAGGGATGGAA 57.084 42.857 0.00 0.00 0.00 3.53
23 24 3.916359 TTGCGTGTTTATAGGGATGGA 57.084 42.857 0.00 0.00 0.00 3.41
24 25 4.439563 GGTTTTGCGTGTTTATAGGGATGG 60.440 45.833 0.00 0.00 0.00 3.51
25 26 4.156922 TGGTTTTGCGTGTTTATAGGGATG 59.843 41.667 0.00 0.00 0.00 3.51
26 27 4.337145 TGGTTTTGCGTGTTTATAGGGAT 58.663 39.130 0.00 0.00 0.00 3.85
27 28 3.752665 TGGTTTTGCGTGTTTATAGGGA 58.247 40.909 0.00 0.00 0.00 4.20
28 29 4.506886 TTGGTTTTGCGTGTTTATAGGG 57.493 40.909 0.00 0.00 0.00 3.53
29 30 5.704888 TGATTGGTTTTGCGTGTTTATAGG 58.295 37.500 0.00 0.00 0.00 2.57
30 31 7.810766 ATTGATTGGTTTTGCGTGTTTATAG 57.189 32.000 0.00 0.00 0.00 1.31
31 32 8.594881 AAATTGATTGGTTTTGCGTGTTTATA 57.405 26.923 0.00 0.00 0.00 0.98
32 33 7.489574 AAATTGATTGGTTTTGCGTGTTTAT 57.510 28.000 0.00 0.00 0.00 1.40
33 34 6.910536 AAATTGATTGGTTTTGCGTGTTTA 57.089 29.167 0.00 0.00 0.00 2.01
34 35 5.809719 AAATTGATTGGTTTTGCGTGTTT 57.190 30.435 0.00 0.00 0.00 2.83
35 36 5.812642 TGTAAATTGATTGGTTTTGCGTGTT 59.187 32.000 0.00 0.00 0.00 3.32
36 37 5.352284 TGTAAATTGATTGGTTTTGCGTGT 58.648 33.333 0.00 0.00 0.00 4.49
37 38 5.896922 TGTAAATTGATTGGTTTTGCGTG 57.103 34.783 0.00 0.00 0.00 5.34
38 39 5.988561 ACATGTAAATTGATTGGTTTTGCGT 59.011 32.000 0.00 0.00 0.00 5.24
39 40 6.464895 ACATGTAAATTGATTGGTTTTGCG 57.535 33.333 0.00 0.00 0.00 4.85
40 41 8.532977 ACTACATGTAAATTGATTGGTTTTGC 57.467 30.769 7.06 0.00 0.00 3.68
41 42 9.139174 GGACTACATGTAAATTGATTGGTTTTG 57.861 33.333 7.06 0.00 0.00 2.44
42 43 8.026607 CGGACTACATGTAAATTGATTGGTTTT 58.973 33.333 7.06 0.00 0.00 2.43
43 44 7.535139 CGGACTACATGTAAATTGATTGGTTT 58.465 34.615 7.06 0.00 0.00 3.27
44 45 6.404293 GCGGACTACATGTAAATTGATTGGTT 60.404 38.462 7.06 0.00 0.00 3.67
45 46 5.065988 GCGGACTACATGTAAATTGATTGGT 59.934 40.000 7.06 0.00 0.00 3.67
46 47 5.065859 TGCGGACTACATGTAAATTGATTGG 59.934 40.000 7.06 0.00 0.00 3.16
47 48 6.117911 TGCGGACTACATGTAAATTGATTG 57.882 37.500 7.06 0.00 0.00 2.67
48 49 6.728200 CATGCGGACTACATGTAAATTGATT 58.272 36.000 7.06 0.00 40.04 2.57
49 50 5.277974 GCATGCGGACTACATGTAAATTGAT 60.278 40.000 0.00 0.00 45.40 2.57
50 51 4.035091 GCATGCGGACTACATGTAAATTGA 59.965 41.667 0.00 0.00 45.40 2.57
51 52 4.035558 AGCATGCGGACTACATGTAAATTG 59.964 41.667 13.01 0.00 45.40 2.32
52 53 4.199310 AGCATGCGGACTACATGTAAATT 58.801 39.130 13.01 0.00 45.40 1.82
53 54 3.808728 AGCATGCGGACTACATGTAAAT 58.191 40.909 13.01 0.00 45.40 1.40
54 55 3.260475 AGCATGCGGACTACATGTAAA 57.740 42.857 13.01 0.00 45.40 2.01
55 56 2.979814 AGCATGCGGACTACATGTAA 57.020 45.000 13.01 0.00 45.40 2.41
56 57 2.691011 TGTAGCATGCGGACTACATGTA 59.309 45.455 21.54 5.25 45.40 2.29
57 58 1.480545 TGTAGCATGCGGACTACATGT 59.519 47.619 21.54 2.69 45.40 3.21
58 59 2.223537 TGTAGCATGCGGACTACATG 57.776 50.000 21.54 0.16 42.82 3.21
59 60 2.979814 TTGTAGCATGCGGACTACAT 57.020 45.000 21.54 2.65 45.95 2.29
60 61 2.753055 TTTGTAGCATGCGGACTACA 57.247 45.000 21.54 17.12 45.25 2.74
61 62 2.286418 GCATTTGTAGCATGCGGACTAC 60.286 50.000 21.54 15.07 37.88 2.73
62 63 1.939934 GCATTTGTAGCATGCGGACTA 59.060 47.619 21.54 14.20 37.88 2.59
63 64 0.734889 GCATTTGTAGCATGCGGACT 59.265 50.000 21.54 5.04 37.88 3.85
64 65 3.240684 GCATTTGTAGCATGCGGAC 57.759 52.632 13.01 14.97 37.88 4.79
68 69 5.728351 ATGAAATTGCATTTGTAGCATGC 57.272 34.783 10.51 10.51 46.25 4.06
69 70 8.415192 AGTAATGAAATTGCATTTGTAGCATG 57.585 30.769 16.92 0.00 41.74 4.06
70 71 9.520204 GTAGTAATGAAATTGCATTTGTAGCAT 57.480 29.630 16.92 0.00 41.74 3.79
71 72 8.518702 TGTAGTAATGAAATTGCATTTGTAGCA 58.481 29.630 16.92 7.72 41.74 3.49
72 73 8.909708 TGTAGTAATGAAATTGCATTTGTAGC 57.090 30.769 16.92 5.48 41.74 3.58
75 76 9.539825 TGTTTGTAGTAATGAAATTGCATTTGT 57.460 25.926 16.92 7.45 41.74 2.83
77 78 9.979578 TCTGTTTGTAGTAATGAAATTGCATTT 57.020 25.926 16.92 2.90 41.74 2.32
78 79 9.410556 GTCTGTTTGTAGTAATGAAATTGCATT 57.589 29.630 16.01 16.01 41.74 3.56
79 80 8.575589 TGTCTGTTTGTAGTAATGAAATTGCAT 58.424 29.630 0.00 0.00 41.74 3.96
80 81 7.935520 TGTCTGTTTGTAGTAATGAAATTGCA 58.064 30.769 0.00 0.00 41.74 4.08
81 82 7.538678 CCTGTCTGTTTGTAGTAATGAAATTGC 59.461 37.037 0.00 0.00 39.39 3.56
82 83 7.538678 GCCTGTCTGTTTGTAGTAATGAAATTG 59.461 37.037 0.00 0.00 36.99 2.32
83 84 7.230510 TGCCTGTCTGTTTGTAGTAATGAAATT 59.769 33.333 0.00 0.00 41.28 1.82
84 85 6.714810 TGCCTGTCTGTTTGTAGTAATGAAAT 59.285 34.615 0.00 0.00 0.00 2.17
85 86 6.017440 GTGCCTGTCTGTTTGTAGTAATGAAA 60.017 38.462 0.00 0.00 0.00 2.69
86 87 5.468746 GTGCCTGTCTGTTTGTAGTAATGAA 59.531 40.000 0.00 0.00 0.00 2.57
87 88 4.994852 GTGCCTGTCTGTTTGTAGTAATGA 59.005 41.667 0.00 0.00 0.00 2.57
88 89 4.754618 TGTGCCTGTCTGTTTGTAGTAATG 59.245 41.667 0.00 0.00 0.00 1.90
89 90 4.968259 TGTGCCTGTCTGTTTGTAGTAAT 58.032 39.130 0.00 0.00 0.00 1.89
90 91 4.409718 TGTGCCTGTCTGTTTGTAGTAA 57.590 40.909 0.00 0.00 0.00 2.24
91 92 4.617253 ATGTGCCTGTCTGTTTGTAGTA 57.383 40.909 0.00 0.00 0.00 1.82
92 93 3.492102 ATGTGCCTGTCTGTTTGTAGT 57.508 42.857 0.00 0.00 0.00 2.73
93 94 4.333649 CCATATGTGCCTGTCTGTTTGTAG 59.666 45.833 1.24 0.00 0.00 2.74
94 95 4.260985 CCATATGTGCCTGTCTGTTTGTA 58.739 43.478 1.24 0.00 0.00 2.41
95 96 3.084039 CCATATGTGCCTGTCTGTTTGT 58.916 45.455 1.24 0.00 0.00 2.83
96 97 3.084039 ACCATATGTGCCTGTCTGTTTG 58.916 45.455 1.24 0.00 0.00 2.93
97 98 3.084039 CACCATATGTGCCTGTCTGTTT 58.916 45.455 1.24 0.00 38.34 2.83
98 99 2.715046 CACCATATGTGCCTGTCTGTT 58.285 47.619 1.24 0.00 38.34 3.16
99 100 2.408271 CACCATATGTGCCTGTCTGT 57.592 50.000 1.24 0.00 38.34 3.41
109 110 4.326826 CTGACTTGAACCACACCATATGT 58.673 43.478 1.24 0.00 44.81 2.29
110 111 3.691118 CCTGACTTGAACCACACCATATG 59.309 47.826 0.00 0.00 0.00 1.78
111 112 3.330701 ACCTGACTTGAACCACACCATAT 59.669 43.478 0.00 0.00 0.00 1.78
112 113 2.708861 ACCTGACTTGAACCACACCATA 59.291 45.455 0.00 0.00 0.00 2.74
113 114 1.494721 ACCTGACTTGAACCACACCAT 59.505 47.619 0.00 0.00 0.00 3.55
114 115 0.916086 ACCTGACTTGAACCACACCA 59.084 50.000 0.00 0.00 0.00 4.17
115 116 1.947456 GAACCTGACTTGAACCACACC 59.053 52.381 0.00 0.00 0.00 4.16
116 117 2.354821 GTGAACCTGACTTGAACCACAC 59.645 50.000 0.00 0.00 0.00 3.82
117 118 2.639065 GTGAACCTGACTTGAACCACA 58.361 47.619 0.00 0.00 0.00 4.17
118 119 1.947456 GGTGAACCTGACTTGAACCAC 59.053 52.381 0.00 0.00 0.00 4.16
119 120 1.562008 TGGTGAACCTGACTTGAACCA 59.438 47.619 0.37 0.00 36.82 3.67
120 121 2.341846 TGGTGAACCTGACTTGAACC 57.658 50.000 0.37 0.00 36.82 3.62
121 122 2.030805 GCATGGTGAACCTGACTTGAAC 60.031 50.000 0.37 0.00 36.82 3.18
122 123 2.158623 AGCATGGTGAACCTGACTTGAA 60.159 45.455 0.00 0.00 36.82 2.69
123 124 1.421268 AGCATGGTGAACCTGACTTGA 59.579 47.619 0.00 0.00 36.82 3.02
124 125 1.901591 AGCATGGTGAACCTGACTTG 58.098 50.000 0.00 0.00 36.82 3.16
125 126 2.233271 CAAGCATGGTGAACCTGACTT 58.767 47.619 0.00 0.00 36.82 3.01
126 127 1.901591 CAAGCATGGTGAACCTGACT 58.098 50.000 0.00 0.00 36.82 3.41
127 128 0.242017 GCAAGCATGGTGAACCTGAC 59.758 55.000 0.00 0.00 36.82 3.51
128 129 0.178995 TGCAAGCATGGTGAACCTGA 60.179 50.000 0.00 0.00 36.82 3.86
129 130 0.892755 ATGCAAGCATGGTGAACCTG 59.107 50.000 6.76 0.00 35.03 4.00
130 131 1.274167 CAATGCAAGCATGGTGAACCT 59.726 47.619 8.50 0.00 36.68 3.50
131 132 1.717194 CAATGCAAGCATGGTGAACC 58.283 50.000 8.50 0.00 36.68 3.62
132 133 1.073177 GCAATGCAAGCATGGTGAAC 58.927 50.000 8.50 0.00 36.68 3.18
133 134 0.680061 TGCAATGCAAGCATGGTGAA 59.320 45.000 5.01 0.00 37.02 3.18
134 135 0.245266 CTGCAATGCAAGCATGGTGA 59.755 50.000 16.26 0.00 41.82 4.02
135 136 0.245266 TCTGCAATGCAAGCATGGTG 59.755 50.000 16.26 5.39 41.82 4.17
136 137 0.530744 CTCTGCAATGCAAGCATGGT 59.469 50.000 16.26 0.00 41.82 3.55
137 138 0.530744 ACTCTGCAATGCAAGCATGG 59.469 50.000 16.26 6.69 41.82 3.66
138 139 1.201414 TCACTCTGCAATGCAAGCATG 59.799 47.619 16.26 12.35 41.82 4.06
139 140 1.541379 TCACTCTGCAATGCAAGCAT 58.459 45.000 16.26 0.86 41.82 3.79
140 141 1.268625 CTTCACTCTGCAATGCAAGCA 59.731 47.619 9.92 15.28 38.41 3.91
141 142 1.268899 ACTTCACTCTGCAATGCAAGC 59.731 47.619 9.92 7.49 38.41 4.01
142 143 2.921069 GCACTTCACTCTGCAATGCAAG 60.921 50.000 9.92 11.98 38.41 4.01
143 144 1.001048 GCACTTCACTCTGCAATGCAA 60.001 47.619 9.92 0.00 38.41 4.08
144 145 0.594602 GCACTTCACTCTGCAATGCA 59.405 50.000 7.99 7.99 36.92 3.96
145 146 0.594602 TGCACTTCACTCTGCAATGC 59.405 50.000 0.00 0.00 40.45 3.56
149 150 1.202794 TCCATTGCACTTCACTCTGCA 60.203 47.619 0.00 0.00 41.68 4.41
150 151 1.527034 TCCATTGCACTTCACTCTGC 58.473 50.000 0.00 0.00 0.00 4.26
151 152 2.095364 GCTTCCATTGCACTTCACTCTG 60.095 50.000 0.00 0.00 0.00 3.35
152 153 2.157738 GCTTCCATTGCACTTCACTCT 58.842 47.619 0.00 0.00 0.00 3.24
153 154 1.200948 GGCTTCCATTGCACTTCACTC 59.799 52.381 0.00 0.00 0.00 3.51
154 155 1.251251 GGCTTCCATTGCACTTCACT 58.749 50.000 0.00 0.00 0.00 3.41
155 156 0.961019 TGGCTTCCATTGCACTTCAC 59.039 50.000 0.00 0.00 0.00 3.18
156 157 1.546923 CATGGCTTCCATTGCACTTCA 59.453 47.619 0.00 0.00 42.23 3.02
157 158 1.547372 ACATGGCTTCCATTGCACTTC 59.453 47.619 0.00 0.00 42.23 3.01
158 159 1.547372 GACATGGCTTCCATTGCACTT 59.453 47.619 0.00 0.00 42.23 3.16
159 160 1.180029 GACATGGCTTCCATTGCACT 58.820 50.000 0.00 0.00 42.23 4.40
160 161 0.889994 TGACATGGCTTCCATTGCAC 59.110 50.000 0.00 0.00 42.23 4.57
161 162 1.179152 CTGACATGGCTTCCATTGCA 58.821 50.000 0.00 0.00 42.23 4.08
162 163 0.458669 CCTGACATGGCTTCCATTGC 59.541 55.000 0.00 0.00 42.23 3.56
163 164 1.843368 ACCTGACATGGCTTCCATTG 58.157 50.000 0.00 0.00 42.23 2.82
164 165 2.564062 CAAACCTGACATGGCTTCCATT 59.436 45.455 0.00 0.00 42.23 3.16
165 166 2.173519 CAAACCTGACATGGCTTCCAT 58.826 47.619 0.00 0.00 46.37 3.41
166 167 1.144708 TCAAACCTGACATGGCTTCCA 59.855 47.619 0.00 0.00 38.19 3.53
167 168 1.909700 TCAAACCTGACATGGCTTCC 58.090 50.000 0.00 0.00 0.00 3.46
168 169 2.622942 TGTTCAAACCTGACATGGCTTC 59.377 45.455 0.00 0.00 0.00 3.86
169 170 2.665165 TGTTCAAACCTGACATGGCTT 58.335 42.857 0.00 0.00 0.00 4.35
170 171 2.363306 TGTTCAAACCTGACATGGCT 57.637 45.000 0.00 0.00 0.00 4.75
171 172 2.927871 GCATGTTCAAACCTGACATGGC 60.928 50.000 15.07 0.00 39.24 4.40
172 173 2.296752 TGCATGTTCAAACCTGACATGG 59.703 45.455 15.07 0.00 39.24 3.66
173 174 3.571571 CTGCATGTTCAAACCTGACATG 58.428 45.455 10.45 10.45 40.40 3.21
174 175 2.559668 CCTGCATGTTCAAACCTGACAT 59.440 45.455 0.00 0.00 0.00 3.06
175 176 1.955778 CCTGCATGTTCAAACCTGACA 59.044 47.619 0.00 0.70 0.00 3.58
176 177 2.229792 TCCTGCATGTTCAAACCTGAC 58.770 47.619 0.00 0.00 0.00 3.51
177 178 2.655090 TCCTGCATGTTCAAACCTGA 57.345 45.000 0.00 0.00 0.00 3.86
178 179 3.181477 TGTTTCCTGCATGTTCAAACCTG 60.181 43.478 0.00 0.00 0.00 4.00
179 180 3.030291 TGTTTCCTGCATGTTCAAACCT 58.970 40.909 0.00 0.00 0.00 3.50
180 181 3.451141 TGTTTCCTGCATGTTCAAACC 57.549 42.857 0.00 0.00 0.00 3.27
181 182 4.432712 ACTTGTTTCCTGCATGTTCAAAC 58.567 39.130 0.00 0.13 0.00 2.93
182 183 4.734398 ACTTGTTTCCTGCATGTTCAAA 57.266 36.364 0.00 0.00 0.00 2.69
183 184 5.048083 GGATACTTGTTTCCTGCATGTTCAA 60.048 40.000 0.00 0.00 0.00 2.69
184 185 4.458989 GGATACTTGTTTCCTGCATGTTCA 59.541 41.667 0.00 0.00 0.00 3.18
185 186 4.142381 GGGATACTTGTTTCCTGCATGTTC 60.142 45.833 9.45 0.00 32.34 3.18
186 187 3.763897 GGGATACTTGTTTCCTGCATGTT 59.236 43.478 9.45 0.00 32.34 2.71
187 188 3.010584 AGGGATACTTGTTTCCTGCATGT 59.989 43.478 9.45 0.00 32.34 3.21
188 189 3.624777 AGGGATACTTGTTTCCTGCATG 58.375 45.455 9.45 0.00 32.34 4.06
189 190 5.625150 GATAGGGATACTTGTTTCCTGCAT 58.375 41.667 9.45 2.46 32.34 3.96
190 191 4.442893 CGATAGGGATACTTGTTTCCTGCA 60.443 45.833 9.45 0.00 32.34 4.41
191 192 4.058817 CGATAGGGATACTTGTTTCCTGC 58.941 47.826 9.45 0.00 32.34 4.85
192 193 5.163447 TGTCGATAGGGATACTTGTTTCCTG 60.163 44.000 9.45 0.00 32.34 3.86
193 194 4.960469 TGTCGATAGGGATACTTGTTTCCT 59.040 41.667 9.45 0.00 32.34 3.36
194 195 5.048507 GTGTCGATAGGGATACTTGTTTCC 58.951 45.833 0.00 2.30 0.00 3.13
195 196 5.903810 AGTGTCGATAGGGATACTTGTTTC 58.096 41.667 0.00 0.00 35.18 2.78
196 197 5.934402 AGTGTCGATAGGGATACTTGTTT 57.066 39.130 0.00 0.00 35.18 2.83
197 198 5.301298 GGTAGTGTCGATAGGGATACTTGTT 59.699 44.000 0.00 0.00 38.93 2.83
198 199 4.826183 GGTAGTGTCGATAGGGATACTTGT 59.174 45.833 0.00 0.00 38.93 3.16
199 200 5.048643 CAGGTAGTGTCGATAGGGATACTTG 60.049 48.000 0.00 0.00 38.93 3.16
200 201 5.071370 CAGGTAGTGTCGATAGGGATACTT 58.929 45.833 0.00 0.00 38.93 2.24
201 202 4.653868 CAGGTAGTGTCGATAGGGATACT 58.346 47.826 0.00 0.00 40.77 2.12
202 203 3.190953 GCAGGTAGTGTCGATAGGGATAC 59.809 52.174 0.00 0.00 0.00 2.24
203 204 3.074094 AGCAGGTAGTGTCGATAGGGATA 59.926 47.826 0.00 0.00 0.00 2.59
204 205 2.158445 AGCAGGTAGTGTCGATAGGGAT 60.158 50.000 0.00 0.00 0.00 3.85
205 206 1.214673 AGCAGGTAGTGTCGATAGGGA 59.785 52.381 0.00 0.00 0.00 4.20
206 207 1.693627 AGCAGGTAGTGTCGATAGGG 58.306 55.000 0.00 0.00 0.00 3.53
207 208 3.478509 AGTAGCAGGTAGTGTCGATAGG 58.521 50.000 0.00 0.00 0.00 2.57
208 209 3.499157 GGAGTAGCAGGTAGTGTCGATAG 59.501 52.174 0.00 0.00 0.00 2.08
209 210 3.474600 GGAGTAGCAGGTAGTGTCGATA 58.525 50.000 0.00 0.00 0.00 2.92
210 211 2.299521 GGAGTAGCAGGTAGTGTCGAT 58.700 52.381 0.00 0.00 0.00 3.59
211 212 1.681166 GGGAGTAGCAGGTAGTGTCGA 60.681 57.143 0.00 0.00 0.00 4.20
212 213 0.739561 GGGAGTAGCAGGTAGTGTCG 59.260 60.000 0.00 0.00 0.00 4.35
213 214 1.112950 GGGGAGTAGCAGGTAGTGTC 58.887 60.000 0.00 0.00 0.00 3.67
214 215 0.711184 AGGGGAGTAGCAGGTAGTGT 59.289 55.000 0.00 0.00 0.00 3.55
215 216 1.115467 CAGGGGAGTAGCAGGTAGTG 58.885 60.000 0.00 0.00 0.00 2.74
216 217 0.711184 ACAGGGGAGTAGCAGGTAGT 59.289 55.000 0.00 0.00 0.00 2.73
217 218 1.115467 CACAGGGGAGTAGCAGGTAG 58.885 60.000 0.00 0.00 0.00 3.18
218 219 0.708209 TCACAGGGGAGTAGCAGGTA 59.292 55.000 0.00 0.00 0.00 3.08
219 220 0.616111 CTCACAGGGGAGTAGCAGGT 60.616 60.000 0.00 0.00 0.00 4.00
220 221 0.324738 TCTCACAGGGGAGTAGCAGG 60.325 60.000 0.00 0.00 36.30 4.85
221 222 1.561643 TTCTCACAGGGGAGTAGCAG 58.438 55.000 0.00 0.00 36.30 4.24
222 223 1.902508 CTTTCTCACAGGGGAGTAGCA 59.097 52.381 0.00 0.00 36.30 3.49
223 224 2.167487 CTCTTTCTCACAGGGGAGTAGC 59.833 54.545 0.00 0.00 36.30 3.58
224 225 3.699038 CTCTCTTTCTCACAGGGGAGTAG 59.301 52.174 0.00 0.00 36.30 2.57
225 226 3.333980 TCTCTCTTTCTCACAGGGGAGTA 59.666 47.826 0.00 0.00 36.30 2.59
226 227 2.110899 TCTCTCTTTCTCACAGGGGAGT 59.889 50.000 0.00 0.00 36.30 3.85
227 228 2.760092 CTCTCTCTTTCTCACAGGGGAG 59.240 54.545 0.00 0.00 36.21 4.30
228 229 2.380249 TCTCTCTCTTTCTCACAGGGGA 59.620 50.000 0.00 0.00 0.00 4.81
229 230 2.813907 TCTCTCTCTTTCTCACAGGGG 58.186 52.381 0.00 0.00 0.00 4.79
230 231 3.195396 CCTTCTCTCTCTTTCTCACAGGG 59.805 52.174 0.00 0.00 0.00 4.45
231 232 4.085733 TCCTTCTCTCTCTTTCTCACAGG 58.914 47.826 0.00 0.00 0.00 4.00
232 233 5.009631 TCTCCTTCTCTCTCTTTCTCACAG 58.990 45.833 0.00 0.00 0.00 3.66
233 234 4.991776 TCTCCTTCTCTCTCTTTCTCACA 58.008 43.478 0.00 0.00 0.00 3.58
234 235 5.253330 TCTCTCCTTCTCTCTCTTTCTCAC 58.747 45.833 0.00 0.00 0.00 3.51
235 236 5.512942 TCTCTCCTTCTCTCTCTTTCTCA 57.487 43.478 0.00 0.00 0.00 3.27
236 237 5.300286 CCATCTCTCCTTCTCTCTCTTTCTC 59.700 48.000 0.00 0.00 0.00 2.87
237 238 5.203528 CCATCTCTCCTTCTCTCTCTTTCT 58.796 45.833 0.00 0.00 0.00 2.52
238 239 4.956075 ACCATCTCTCCTTCTCTCTCTTTC 59.044 45.833 0.00 0.00 0.00 2.62
239 240 4.711355 CACCATCTCTCCTTCTCTCTCTTT 59.289 45.833 0.00 0.00 0.00 2.52
240 241 4.280819 CACCATCTCTCCTTCTCTCTCTT 58.719 47.826 0.00 0.00 0.00 2.85
241 242 3.373001 CCACCATCTCTCCTTCTCTCTCT 60.373 52.174 0.00 0.00 0.00 3.10
242 243 2.958355 CCACCATCTCTCCTTCTCTCTC 59.042 54.545 0.00 0.00 0.00 3.20
243 244 2.954539 GCCACCATCTCTCCTTCTCTCT 60.955 54.545 0.00 0.00 0.00 3.10
244 245 1.412343 GCCACCATCTCTCCTTCTCTC 59.588 57.143 0.00 0.00 0.00 3.20
245 246 1.008206 AGCCACCATCTCTCCTTCTCT 59.992 52.381 0.00 0.00 0.00 3.10
246 247 1.494960 AGCCACCATCTCTCCTTCTC 58.505 55.000 0.00 0.00 0.00 2.87
247 248 1.963985 AAGCCACCATCTCTCCTTCT 58.036 50.000 0.00 0.00 0.00 2.85
248 249 3.186702 GTAAGCCACCATCTCTCCTTC 57.813 52.381 0.00 0.00 0.00 3.46
263 264 4.818835 GCTTGCGCGCTGGTAAGC 62.819 66.667 29.85 29.85 45.76 3.09
274 275 4.421479 AGGTCGTCTCCGCTTGCG 62.421 66.667 8.14 8.14 0.00 4.85
275 276 2.507324 GAGGTCGTCTCCGCTTGC 60.507 66.667 0.00 0.00 36.52 4.01
283 284 0.684805 GGTGGAGATGGAGGTCGTCT 60.685 60.000 0.00 0.00 43.97 4.18
284 285 1.677637 GGGTGGAGATGGAGGTCGTC 61.678 65.000 0.00 0.00 0.00 4.20
285 286 1.686110 GGGTGGAGATGGAGGTCGT 60.686 63.158 0.00 0.00 0.00 4.34
286 287 2.435693 GGGGTGGAGATGGAGGTCG 61.436 68.421 0.00 0.00 0.00 4.79
287 288 2.073101 GGGGGTGGAGATGGAGGTC 61.073 68.421 0.00 0.00 0.00 3.85
288 289 2.042930 GGGGGTGGAGATGGAGGT 59.957 66.667 0.00 0.00 0.00 3.85
289 290 2.042762 TGGGGGTGGAGATGGAGG 59.957 66.667 0.00 0.00 0.00 4.30
290 291 2.378634 GGTGGGGGTGGAGATGGAG 61.379 68.421 0.00 0.00 0.00 3.86
291 292 2.286121 GGTGGGGGTGGAGATGGA 60.286 66.667 0.00 0.00 0.00 3.41
292 293 2.286425 AGGTGGGGGTGGAGATGG 60.286 66.667 0.00 0.00 0.00 3.51
293 294 2.735772 CGAGGTGGGGGTGGAGATG 61.736 68.421 0.00 0.00 0.00 2.90
294 295 2.365635 CGAGGTGGGGGTGGAGAT 60.366 66.667 0.00 0.00 0.00 2.75
295 296 3.899545 GACGAGGTGGGGGTGGAGA 62.900 68.421 0.00 0.00 0.00 3.71
296 297 3.391382 GACGAGGTGGGGGTGGAG 61.391 72.222 0.00 0.00 0.00 3.86
317 318 3.191539 CTGAAGCTCGCGAAGGCC 61.192 66.667 15.81 0.00 35.02 5.19
318 319 1.086634 ATTCTGAAGCTCGCGAAGGC 61.087 55.000 11.33 11.73 0.00 4.35
319 320 0.649475 CATTCTGAAGCTCGCGAAGG 59.351 55.000 11.33 0.00 0.00 3.46
320 321 1.633561 TCATTCTGAAGCTCGCGAAG 58.366 50.000 11.33 4.00 0.00 3.79
321 322 1.929169 CATCATTCTGAAGCTCGCGAA 59.071 47.619 11.33 0.00 0.00 4.70
322 323 1.564207 CATCATTCTGAAGCTCGCGA 58.436 50.000 9.26 9.26 0.00 5.87
323 324 0.580578 CCATCATTCTGAAGCTCGCG 59.419 55.000 0.00 0.00 0.00 5.87
324 325 1.945387 TCCATCATTCTGAAGCTCGC 58.055 50.000 0.00 0.00 0.00 5.03
325 326 5.496133 AATTTCCATCATTCTGAAGCTCG 57.504 39.130 0.00 0.00 0.00 5.03
326 327 6.530534 CACAAATTTCCATCATTCTGAAGCTC 59.469 38.462 0.00 0.00 0.00 4.09
327 328 6.395629 CACAAATTTCCATCATTCTGAAGCT 58.604 36.000 0.00 0.00 0.00 3.74
328 329 5.063060 GCACAAATTTCCATCATTCTGAAGC 59.937 40.000 0.00 0.00 0.00 3.86
329 330 6.160684 TGCACAAATTTCCATCATTCTGAAG 58.839 36.000 0.00 0.00 0.00 3.02
330 331 6.099159 TGCACAAATTTCCATCATTCTGAA 57.901 33.333 0.00 0.00 0.00 3.02
331 332 5.725325 TGCACAAATTTCCATCATTCTGA 57.275 34.783 0.00 0.00 0.00 3.27
332 333 6.200286 GCTATGCACAAATTTCCATCATTCTG 59.800 38.462 0.00 0.00 0.00 3.02
333 334 6.097839 AGCTATGCACAAATTTCCATCATTCT 59.902 34.615 0.00 0.00 0.00 2.40
334 335 6.278363 AGCTATGCACAAATTTCCATCATTC 58.722 36.000 0.00 0.00 0.00 2.67
335 336 6.229936 AGCTATGCACAAATTTCCATCATT 57.770 33.333 0.00 0.00 0.00 2.57
336 337 5.864418 AGCTATGCACAAATTTCCATCAT 57.136 34.783 0.00 0.00 0.00 2.45
337 338 5.419788 AGAAGCTATGCACAAATTTCCATCA 59.580 36.000 0.00 0.00 0.00 3.07
338 339 5.899299 AGAAGCTATGCACAAATTTCCATC 58.101 37.500 0.00 0.00 0.00 3.51
339 340 5.927281 AGAAGCTATGCACAAATTTCCAT 57.073 34.783 0.00 0.00 0.00 3.41
340 341 5.477984 AGAAGAAGCTATGCACAAATTTCCA 59.522 36.000 0.00 0.00 0.00 3.53
341 342 5.958955 AGAAGAAGCTATGCACAAATTTCC 58.041 37.500 0.00 0.00 0.00 3.13
342 343 6.615088 TGAGAAGAAGCTATGCACAAATTTC 58.385 36.000 0.00 0.00 0.00 2.17
343 344 6.579666 TGAGAAGAAGCTATGCACAAATTT 57.420 33.333 0.00 0.00 0.00 1.82
344 345 6.579666 TTGAGAAGAAGCTATGCACAAATT 57.420 33.333 0.00 0.00 0.00 1.82
345 346 5.392811 GCTTGAGAAGAAGCTATGCACAAAT 60.393 40.000 0.00 0.00 44.26 2.32
346 347 4.083110 GCTTGAGAAGAAGCTATGCACAAA 60.083 41.667 0.00 0.00 44.26 2.83
347 348 3.438087 GCTTGAGAAGAAGCTATGCACAA 59.562 43.478 0.00 0.00 44.26 3.33
348 349 3.005554 GCTTGAGAAGAAGCTATGCACA 58.994 45.455 0.00 0.00 44.26 4.57
349 350 2.030213 CGCTTGAGAAGAAGCTATGCAC 59.970 50.000 0.00 0.00 45.26 4.57
350 351 2.274437 CGCTTGAGAAGAAGCTATGCA 58.726 47.619 0.00 0.00 45.26 3.96
351 352 1.596727 CCGCTTGAGAAGAAGCTATGC 59.403 52.381 0.00 0.00 45.26 3.14
352 353 1.596727 GCCGCTTGAGAAGAAGCTATG 59.403 52.381 0.00 0.00 45.26 2.23
353 354 1.804372 CGCCGCTTGAGAAGAAGCTAT 60.804 52.381 0.00 0.00 45.26 2.97
354 355 0.458543 CGCCGCTTGAGAAGAAGCTA 60.459 55.000 0.00 0.00 45.26 3.32
355 356 1.739562 CGCCGCTTGAGAAGAAGCT 60.740 57.895 0.00 0.00 45.26 3.74
356 357 2.781300 CGCCGCTTGAGAAGAAGC 59.219 61.111 0.00 0.00 44.21 3.86
357 358 2.744768 GGCGCCGCTTGAGAAGAAG 61.745 63.158 12.58 0.00 0.00 2.85
358 359 2.742372 GGCGCCGCTTGAGAAGAA 60.742 61.111 12.58 0.00 0.00 2.52
359 360 3.649277 GAGGCGCCGCTTGAGAAGA 62.649 63.158 24.06 0.00 0.00 2.87
360 361 3.191539 GAGGCGCCGCTTGAGAAG 61.192 66.667 24.06 0.00 0.00 2.85
361 362 3.939837 CTGAGGCGCCGCTTGAGAA 62.940 63.158 30.49 8.64 0.00 2.87
362 363 4.441695 CTGAGGCGCCGCTTGAGA 62.442 66.667 30.49 9.43 0.00 3.27
382 383 4.028490 CTAGTGGTTGGGGCGCCA 62.028 66.667 30.85 20.22 0.00 5.69
383 384 4.029809 ACTAGTGGTTGGGGCGCC 62.030 66.667 21.18 21.18 0.00 6.53
384 385 2.746277 CACTAGTGGTTGGGGCGC 60.746 66.667 15.49 0.00 0.00 6.53
385 386 2.746277 GCACTAGTGGTTGGGGCG 60.746 66.667 23.95 0.00 0.00 6.13
386 387 1.377333 GAGCACTAGTGGTTGGGGC 60.377 63.158 27.14 11.51 41.93 5.80
387 388 1.568504 TAGAGCACTAGTGGTTGGGG 58.431 55.000 27.14 0.00 41.93 4.96
388 389 2.766263 TCATAGAGCACTAGTGGTTGGG 59.234 50.000 27.14 16.95 41.93 4.12
389 390 4.471904 TTCATAGAGCACTAGTGGTTGG 57.528 45.455 27.14 16.65 41.93 3.77
390 391 4.631813 GGTTTCATAGAGCACTAGTGGTTG 59.368 45.833 27.14 20.93 41.93 3.77
391 392 4.620803 CGGTTTCATAGAGCACTAGTGGTT 60.621 45.833 27.14 18.58 41.93 3.67
392 393 3.119101 CGGTTTCATAGAGCACTAGTGGT 60.119 47.826 26.83 26.83 44.89 4.16
393 394 3.119101 ACGGTTTCATAGAGCACTAGTGG 60.119 47.826 23.95 6.61 31.78 4.00
394 395 4.111375 ACGGTTTCATAGAGCACTAGTG 57.889 45.455 18.93 18.93 31.78 2.74
395 396 4.703575 TGTACGGTTTCATAGAGCACTAGT 59.296 41.667 0.00 0.00 31.78 2.57
396 397 5.244785 TGTACGGTTTCATAGAGCACTAG 57.755 43.478 0.00 0.00 31.78 2.57
397 398 5.358725 TCATGTACGGTTTCATAGAGCACTA 59.641 40.000 0.00 0.00 0.00 2.74
398 399 4.159693 TCATGTACGGTTTCATAGAGCACT 59.840 41.667 0.00 0.00 0.00 4.40
399 400 4.430007 TCATGTACGGTTTCATAGAGCAC 58.570 43.478 0.00 0.00 0.00 4.40
492 493 3.644966 TGTGTGAAAGAAAGGACCACT 57.355 42.857 0.00 0.00 0.00 4.00
523 524 2.031508 CCAGTTAACCGAAAACGCATGT 60.032 45.455 0.88 0.00 32.00 3.21
524 525 2.031508 ACCAGTTAACCGAAAACGCATG 60.032 45.455 0.88 0.00 32.00 4.06
557 558 3.007614 GGGCTACACTAAGACAAACCTCA 59.992 47.826 0.00 0.00 0.00 3.86
605 606 7.866393 CGAAGACCTTTTTGAGTCTAGAAGTAA 59.134 37.037 0.00 0.00 42.48 2.24
623 624 2.203938 TCCCCTTGGCGAAGACCT 60.204 61.111 10.40 0.00 25.51 3.85
777 778 3.390135 TCTTCCTCGTGCTAGTGTTTTG 58.610 45.455 0.00 0.00 0.00 2.44
786 787 3.626930 AGTTCTAGATCTTCCTCGTGCT 58.373 45.455 0.00 0.00 0.00 4.40
810 811 5.742063 ACTTGATGTGATGTGATGTGATCT 58.258 37.500 0.00 0.00 0.00 2.75
1009 1614 1.632018 GGGTCGTGGGGGATGATTGA 61.632 60.000 0.00 0.00 0.00 2.57
1014 1619 1.635817 ATTGAGGGTCGTGGGGGATG 61.636 60.000 0.00 0.00 0.00 3.51
1793 2446 1.271597 GCAGTTGGAGTTGGAGGATGT 60.272 52.381 0.00 0.00 0.00 3.06
1884 2541 1.227497 CTCCATTCGCAGAGAGGGC 60.227 63.158 0.00 0.00 38.43 5.19
1996 2661 2.489329 GCAGTTGGAGAATGCTTTGCTA 59.511 45.455 0.00 0.00 37.00 3.49
2016 2681 1.227999 TTACCAGTTGACGCAGCTGC 61.228 55.000 29.12 29.12 40.50 5.25
2045 2710 1.559965 TTGGAGGATGCTCTGCTGCT 61.560 55.000 14.40 0.00 34.59 4.24
2046 2711 1.077930 TTGGAGGATGCTCTGCTGC 60.078 57.895 14.40 0.00 34.06 5.25
2047 2712 0.252479 AGTTGGAGGATGCTCTGCTG 59.748 55.000 14.40 0.00 0.00 4.41
2048 2713 0.540923 GAGTTGGAGGATGCTCTGCT 59.459 55.000 14.40 9.42 0.00 4.24
2049 2714 0.463474 GGAGTTGGAGGATGCTCTGC 60.463 60.000 14.40 4.86 0.00 4.26
2050 2715 0.907486 TGGAGTTGGAGGATGCTCTG 59.093 55.000 14.40 0.00 0.00 3.35
2143 2808 3.465403 CAGGAGCAGGAGGACCGG 61.465 72.222 0.00 0.00 41.83 5.28
2146 2811 2.583520 CAGCAGGAGCAGGAGGAC 59.416 66.667 0.00 0.00 45.49 3.85
2298 2993 3.200605 ACCATGGACACAATATCAGCTGA 59.799 43.478 20.79 20.79 0.00 4.26
2706 3441 0.105453 TCAGATACCTGGAGGGAGGC 60.105 60.000 0.00 0.00 40.76 4.70
2820 3556 6.015603 TGACAGTGCCATAAATGATTCAAACA 60.016 34.615 0.00 0.00 0.00 2.83
2959 3697 5.717178 TCAGACATCAGTAGGCCCTATAATC 59.283 44.000 0.00 0.00 0.00 1.75
3067 3805 4.788617 AGGGAGTGCTTTAGGAGGAATTTA 59.211 41.667 0.00 0.00 0.00 1.40
3541 7637 3.623060 TCTCCAGCGAATCATTAAGTTGC 59.377 43.478 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.