Multiple sequence alignment - TraesCS5D01G416800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G416800 chr5D 100.000 4870 0 0 1 4870 478964783 478959914 0.000000e+00 8994.0
1 TraesCS5D01G416800 chr5D 81.306 444 60 14 3088 3511 531899130 531898690 6.040000e-89 339.0
2 TraesCS5D01G416800 chr5D 81.542 428 61 12 3091 3503 347476435 347476859 2.170000e-88 337.0
3 TraesCS5D01G416800 chr5D 83.770 191 27 3 73 259 265661194 265661384 1.390000e-40 178.0
4 TraesCS5D01G416800 chr5D 75.294 425 72 24 3102 3499 495223180 495223598 6.480000e-39 172.0
5 TraesCS5D01G416800 chr5D 81.373 204 27 5 73 270 281848719 281848917 6.530000e-34 156.0
6 TraesCS5D01G416800 chr5D 84.416 77 9 3 4422 4498 85910900 85910827 6.760000e-09 73.1
7 TraesCS5D01G416800 chr5D 91.111 45 4 0 1126 1170 478963598 478963554 1.460000e-05 62.1
8 TraesCS5D01G416800 chr5B 91.813 2846 161 30 2 2813 586823941 586821134 0.000000e+00 3899.0
9 TraesCS5D01G416800 chr5B 90.945 508 35 3 3518 4023 586821136 586820638 0.000000e+00 673.0
10 TraesCS5D01G416800 chr5B 91.067 403 20 5 4021 4407 586820577 586820175 9.280000e-147 531.0
11 TraesCS5D01G416800 chr5B 82.949 434 52 14 3088 3505 682461914 682461487 5.950000e-99 372.0
12 TraesCS5D01G416800 chr5B 100.000 45 0 0 4826 4870 586819555 586819511 3.120000e-12 84.2
13 TraesCS5D01G416800 chr5A 95.213 2235 80 11 801 3013 597797097 597794868 0.000000e+00 3509.0
14 TraesCS5D01G416800 chr5A 92.048 1094 43 13 3013 4092 597794516 597793453 0.000000e+00 1498.0
15 TraesCS5D01G416800 chr5A 83.140 688 99 12 1 679 597797792 597797113 3.220000e-171 612.0
16 TraesCS5D01G416800 chr5A 88.018 217 13 3 4017 4233 597793458 597793255 1.350000e-60 244.0
17 TraesCS5D01G416800 chr5A 89.333 150 16 0 73 222 353156254 353156403 6.430000e-44 189.0
18 TraesCS5D01G416800 chr5A 78.723 329 26 16 4279 4577 597792642 597792328 3.870000e-41 180.0
19 TraesCS5D01G416800 chrUn 81.695 590 71 22 3768 4348 35322210 35321649 1.600000e-124 457.0
20 TraesCS5D01G416800 chrUn 79.633 599 88 25 3768 4348 34661260 34660678 2.730000e-107 399.0
21 TraesCS5D01G416800 chrUn 86.000 200 19 5 4151 4348 32295427 32295235 6.390000e-49 206.0
22 TraesCS5D01G416800 chrUn 79.213 178 28 7 3333 3506 336730483 336730655 1.110000e-21 115.0
23 TraesCS5D01G416800 chr7B 82.679 433 58 13 3088 3505 572030233 572030663 7.700000e-98 368.0
24 TraesCS5D01G416800 chr7B 81.614 223 32 7 489 710 327383109 327382895 5.010000e-40 176.0
25 TraesCS5D01G416800 chr7B 73.529 442 78 27 3094 3504 29454731 29455164 1.100000e-26 132.0
26 TraesCS5D01G416800 chr7A 82.273 440 58 16 3088 3512 571693697 571693263 3.580000e-96 363.0
27 TraesCS5D01G416800 chr7A 82.045 440 57 15 3088 3512 189713192 189712760 6.000000e-94 355.0
28 TraesCS5D01G416800 chr7A 83.453 139 19 1 73 207 207280889 207280751 5.120000e-25 126.0
29 TraesCS5D01G416800 chr7D 82.767 412 54 13 3088 3484 497044134 497043725 7.760000e-93 351.0
30 TraesCS5D01G416800 chr7D 78.261 230 38 11 73 292 198023931 198023704 2.360000e-28 137.0
31 TraesCS5D01G416800 chr1B 80.260 385 58 14 3088 3458 343950841 343951221 1.730000e-69 274.0
32 TraesCS5D01G416800 chr1B 92.308 52 3 1 4447 4497 112758970 112758919 6.760000e-09 73.1
33 TraesCS5D01G416800 chr1A 76.310 439 69 26 3094 3503 13849663 13849231 8.270000e-48 202.0
34 TraesCS5D01G416800 chr6A 80.216 278 46 6 3229 3499 6708469 6708194 2.970000e-47 200.0
35 TraesCS5D01G416800 chr6A 82.511 223 30 5 489 710 81124921 81124707 2.310000e-43 187.0
36 TraesCS5D01G416800 chr2D 82.063 223 31 6 489 710 156198252 156198466 1.080000e-41 182.0
37 TraesCS5D01G416800 chr4D 81.166 223 33 6 489 710 38523826 38523612 2.330000e-38 171.0
38 TraesCS5D01G416800 chr4D 81.166 223 33 4 489 710 350975733 350975519 2.330000e-38 171.0
39 TraesCS5D01G416800 chr4D 80.717 223 34 6 489 710 149173910 149174124 1.080000e-36 165.0
40 TraesCS5D01G416800 chr4D 92.593 54 3 1 4445 4497 91556827 91556880 5.230000e-10 76.8
41 TraesCS5D01G416800 chr3D 81.166 223 33 6 489 710 440238483 440238269 2.330000e-38 171.0
42 TraesCS5D01G416800 chr2B 75.682 403 61 13 3097 3484 1982012 1982392 3.020000e-37 167.0
43 TraesCS5D01G416800 chr2B 81.443 97 14 3 3412 3504 1983086 1983182 5.230000e-10 76.8
44 TraesCS5D01G416800 chr3A 89.655 116 11 1 4631 4745 11381656 11381771 3.930000e-31 147.0
45 TraesCS5D01G416800 chr3A 94.444 54 2 1 4445 4497 603258981 603258928 1.120000e-11 82.4
46 TraesCS5D01G416800 chr4B 82.468 154 18 5 74 220 130604585 130604736 5.120000e-25 126.0
47 TraesCS5D01G416800 chr6D 81.579 152 24 1 71 218 37680168 37680017 6.620000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G416800 chr5D 478959914 478964783 4869 True 4528.05 8994 95.55550 1 4870 2 chr5D.!!$R3 4869
1 TraesCS5D01G416800 chr5B 586819511 586823941 4430 True 1296.80 3899 93.45625 2 4870 4 chr5B.!!$R2 4868
2 TraesCS5D01G416800 chr5A 597792328 597797792 5464 True 1208.60 3509 87.42840 1 4577 5 chr5A.!!$R1 4576
3 TraesCS5D01G416800 chrUn 35321649 35322210 561 True 457.00 457 81.69500 3768 4348 1 chrUn.!!$R3 580
4 TraesCS5D01G416800 chrUn 34660678 34661260 582 True 399.00 399 79.63300 3768 4348 1 chrUn.!!$R2 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
795 812 0.467290 GCTTTCTGGGTGTTGTGGGA 60.467 55.000 0.00 0.00 0.0 4.37 F
2155 2188 0.041684 TCAGATCTGGCAGAGGGTGA 59.958 55.000 23.24 19.94 0.0 4.02 F
2994 3036 1.379977 CCTGGCTCGTCTGGGTCTA 60.380 63.158 0.00 0.00 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2234 2267 0.984230 TTGCCACACCTTCCTCCTAG 59.016 55.0 0.0 0.0 0.00 3.02 R
3201 3595 0.104304 GCCGTCCGATCCACATAACT 59.896 55.0 0.0 0.0 0.00 2.24 R
4635 6052 0.460635 CCAGAAGAGAGAGCAGCAGC 60.461 60.0 0.0 0.0 42.56 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.840102 CTAGGGGACTCTGCGGGG 60.840 72.222 0.00 0.00 43.67 5.73
51 52 4.347000 TCCAAACCATAGCTATGTAGGACC 59.653 45.833 27.75 0.00 31.82 4.46
52 53 4.307432 CAAACCATAGCTATGTAGGACCG 58.693 47.826 27.75 15.35 31.82 4.79
60 61 1.669049 TATGTAGGACCGTGGCACCG 61.669 60.000 12.86 8.37 0.00 4.94
61 62 3.688159 GTAGGACCGTGGCACCGT 61.688 66.667 12.86 12.08 0.00 4.83
78 79 1.003718 GTCGTCCCACTCAAAGGGG 60.004 63.158 0.00 0.00 46.77 4.79
207 212 9.744468 TTCAATCTTTGATGATTTGATATGCTG 57.256 29.630 0.00 0.00 39.84 4.41
224 229 1.280982 CTGCTATTTTGAGCTCGCGA 58.719 50.000 9.26 9.26 43.27 5.87
258 264 2.514160 AGAGGCGGAAATTTTAGGGGAT 59.486 45.455 0.00 0.00 0.00 3.85
272 278 3.151542 AGGGGATAAGGTTGGATGACT 57.848 47.619 0.00 0.00 0.00 3.41
273 279 2.780010 AGGGGATAAGGTTGGATGACTG 59.220 50.000 0.00 0.00 0.00 3.51
274 280 2.777692 GGGGATAAGGTTGGATGACTGA 59.222 50.000 0.00 0.00 0.00 3.41
277 283 4.080299 GGGATAAGGTTGGATGACTGACTT 60.080 45.833 0.00 0.00 0.00 3.01
299 305 0.902984 ACATCACTGCCCGTGGACTA 60.903 55.000 3.75 0.00 43.94 2.59
335 341 4.707030 ACAGACAAATATCGTGTCCGTA 57.293 40.909 13.32 0.00 45.39 4.02
336 342 4.669318 ACAGACAAATATCGTGTCCGTAG 58.331 43.478 13.32 6.60 45.39 3.51
340 346 5.067413 AGACAAATATCGTGTCCGTAGTGAT 59.933 40.000 13.32 0.00 45.39 3.06
348 354 2.029290 GTGTCCGTAGTGATGGTCAACT 60.029 50.000 0.00 0.00 32.47 3.16
359 365 5.485353 AGTGATGGTCAACTTTGGAGATCTA 59.515 40.000 0.00 0.00 0.00 1.98
369 375 2.130272 TGGAGATCTACGTCAGCAGT 57.870 50.000 0.00 0.00 0.00 4.40
371 377 1.746220 GGAGATCTACGTCAGCAGTGT 59.254 52.381 0.00 0.00 0.00 3.55
383 389 2.111384 CAGCAGTGTATACTCCCCTGT 58.889 52.381 4.17 0.00 34.07 4.00
390 396 1.399744 TATACTCCCCTGTGCGGCTG 61.400 60.000 0.00 0.00 0.00 4.85
465 471 3.056678 CCATTGCTTGGTGCTACATTTCA 60.057 43.478 0.00 0.00 40.99 2.69
500 506 4.433186 TTTAACACCGGCTCATTCAATG 57.567 40.909 0.00 0.00 0.00 2.82
533 539 3.691609 CCAAACTCAGGAATTAGGAGTGC 59.308 47.826 6.84 0.00 40.80 4.40
549 555 5.809001 AGGAGTGCACAAGAATTTGATAGA 58.191 37.500 21.04 0.00 37.73 1.98
556 562 7.972277 GTGCACAAGAATTTGATAGAATGACAT 59.028 33.333 13.17 0.00 37.73 3.06
566 572 6.395426 TGATAGAATGACATTTGCCATTCC 57.605 37.500 13.75 2.93 45.85 3.01
572 578 3.237746 TGACATTTGCCATTCCAAGGAA 58.762 40.909 3.67 3.67 38.59 3.36
594 601 4.395959 TTGTCTTGACTTGTTCCTACGT 57.604 40.909 0.00 0.00 0.00 3.57
637 645 2.866762 GGATGCGATGTGTAGTTTCCTC 59.133 50.000 0.00 0.00 0.00 3.71
649 657 4.642885 TGTAGTTTCCTCCAAAAACACAGG 59.357 41.667 2.05 0.00 38.73 4.00
653 661 4.729227 TTCCTCCAAAAACACAGGAAAC 57.271 40.909 0.00 0.00 41.22 2.78
668 676 9.886132 AACACAGGAAACGAATAGTATTTCTAT 57.114 29.630 0.00 0.00 40.68 1.98
710 719 7.716799 TTCTTACAAACCCAATGCATCTATT 57.283 32.000 0.00 0.00 0.00 1.73
716 725 5.587388 AACCCAATGCATCTATTCTTGTG 57.413 39.130 0.00 0.00 0.00 3.33
718 727 4.400251 ACCCAATGCATCTATTCTTGTGTG 59.600 41.667 0.00 0.00 0.00 3.82
738 747 8.994429 TGTGTGTGTGTTTTTCTATGAAAATT 57.006 26.923 6.35 0.00 31.80 1.82
742 751 8.968242 GTGTGTGTTTTTCTATGAAAATTCTCC 58.032 33.333 6.35 0.00 31.80 3.71
743 752 8.690884 TGTGTGTTTTTCTATGAAAATTCTCCA 58.309 29.630 6.35 0.69 31.80 3.86
744 753 9.528018 GTGTGTTTTTCTATGAAAATTCTCCAA 57.472 29.630 6.35 0.00 31.80 3.53
763 772 1.632589 AACAGAATGAGGCCAAACCC 58.367 50.000 5.01 0.00 39.69 4.11
764 773 0.482446 ACAGAATGAGGCCAAACCCA 59.518 50.000 5.01 0.00 39.69 4.51
766 775 0.779997 AGAATGAGGCCAAACCCAGT 59.220 50.000 5.01 0.00 40.58 4.00
774 791 0.673985 GCCAAACCCAGTTCTCAACC 59.326 55.000 0.00 0.00 0.00 3.77
792 809 0.670162 CCTGCTTTCTGGGTGTTGTG 59.330 55.000 0.00 0.00 0.00 3.33
793 810 0.670162 CTGCTTTCTGGGTGTTGTGG 59.330 55.000 0.00 0.00 0.00 4.17
794 811 0.754957 TGCTTTCTGGGTGTTGTGGG 60.755 55.000 0.00 0.00 0.00 4.61
795 812 0.467290 GCTTTCTGGGTGTTGTGGGA 60.467 55.000 0.00 0.00 0.00 4.37
796 813 2.026905 GCTTTCTGGGTGTTGTGGGAA 61.027 52.381 0.00 0.00 0.00 3.97
797 814 2.597455 CTTTCTGGGTGTTGTGGGAAT 58.403 47.619 0.00 0.00 0.00 3.01
798 815 1.993956 TTCTGGGTGTTGTGGGAATG 58.006 50.000 0.00 0.00 0.00 2.67
799 816 0.539438 TCTGGGTGTTGTGGGAATGC 60.539 55.000 0.00 0.00 0.00 3.56
866 883 1.349357 GGCCTCCAGAGAAGAACTTGT 59.651 52.381 0.00 0.00 0.00 3.16
867 884 2.567615 GGCCTCCAGAGAAGAACTTGTA 59.432 50.000 0.00 0.00 0.00 2.41
868 885 3.368948 GGCCTCCAGAGAAGAACTTGTAG 60.369 52.174 0.00 0.00 0.00 2.74
869 886 3.855858 CCTCCAGAGAAGAACTTGTAGC 58.144 50.000 0.00 0.00 0.00 3.58
870 887 3.259374 CCTCCAGAGAAGAACTTGTAGCA 59.741 47.826 0.00 0.00 0.00 3.49
871 888 4.493547 CTCCAGAGAAGAACTTGTAGCAG 58.506 47.826 0.00 0.00 0.00 4.24
872 889 3.898123 TCCAGAGAAGAACTTGTAGCAGT 59.102 43.478 0.00 0.00 0.00 4.40
873 890 3.993081 CCAGAGAAGAACTTGTAGCAGTG 59.007 47.826 0.00 0.00 0.00 3.66
874 891 4.262207 CCAGAGAAGAACTTGTAGCAGTGA 60.262 45.833 0.00 0.00 0.00 3.41
875 892 5.292765 CAGAGAAGAACTTGTAGCAGTGAA 58.707 41.667 0.00 0.00 0.00 3.18
876 893 5.755375 CAGAGAAGAACTTGTAGCAGTGAAA 59.245 40.000 0.00 0.00 0.00 2.69
877 894 5.988561 AGAGAAGAACTTGTAGCAGTGAAAG 59.011 40.000 0.00 0.00 0.00 2.62
878 895 4.513318 AGAAGAACTTGTAGCAGTGAAAGC 59.487 41.667 0.00 0.00 0.00 3.51
879 896 4.078639 AGAACTTGTAGCAGTGAAAGCT 57.921 40.909 0.00 0.00 45.77 3.74
880 897 4.061596 AGAACTTGTAGCAGTGAAAGCTC 58.938 43.478 0.00 0.00 42.32 4.09
881 898 2.408050 ACTTGTAGCAGTGAAAGCTCG 58.592 47.619 0.00 0.00 42.32 5.03
986 1010 4.535116 GGAGTCGTCTATGACCGAATAAC 58.465 47.826 0.00 0.00 39.77 1.89
1176 1203 2.569354 GGCGAGCGAGGAGGATGAT 61.569 63.158 0.00 0.00 0.00 2.45
1377 1410 1.078848 CCTTCTCCTTCTGCCACCG 60.079 63.158 0.00 0.00 0.00 4.94
1662 1695 2.281900 GCCTTGCACCGGGTGTTA 60.282 61.111 26.86 14.59 35.75 2.41
1825 1858 0.961753 CAGCCCTTTCAAGGTTGTCC 59.038 55.000 4.86 0.00 44.98 4.02
1963 1996 2.037511 CCCGCGACCCTTATTGGTAATA 59.962 50.000 8.23 0.00 39.24 0.98
2085 2118 6.698541 TGGCAACTATAGGATCATCAAGCCT 61.699 44.000 4.43 0.00 42.68 4.58
2155 2188 0.041684 TCAGATCTGGCAGAGGGTGA 59.958 55.000 23.24 19.94 0.00 4.02
2160 2193 3.135530 AGATCTGGCAGAGGGTGATTAAC 59.864 47.826 23.24 4.17 0.00 2.01
2234 2267 2.368221 CTCTTGGGATCCCTCATCAGAC 59.632 54.545 31.05 1.94 36.94 3.51
2423 2456 1.843851 TCCGCCAGGTAATTCCTCATT 59.156 47.619 0.00 0.00 46.24 2.57
2432 2465 8.594550 GCCAGGTAATTCCTCATTCTTAGTATA 58.405 37.037 0.00 0.00 46.24 1.47
2474 2507 7.913789 ACCCAATCTAGTTATGTTCTGTACAA 58.086 34.615 0.00 0.00 40.89 2.41
2594 2629 6.486253 TTGATGTCAAATGAGTGAGTTAGC 57.514 37.500 0.00 0.00 32.11 3.09
2753 2794 2.662596 CCCTTCTGCTGGTGCGTA 59.337 61.111 0.00 0.00 43.34 4.42
2871 2913 2.159142 CCGTCTATACCGGCACTTCTTT 60.159 50.000 0.00 0.00 38.85 2.52
2883 2925 2.411547 GCACTTCTTTGATTCGGACACG 60.412 50.000 0.00 0.00 42.74 4.49
2921 2963 1.845627 CTTCCAGCTCCTTGGGCTCA 61.846 60.000 0.00 0.00 38.03 4.26
2961 3003 2.825836 CCGTTGGCCTGGATCTGC 60.826 66.667 3.32 0.00 0.00 4.26
2969 3011 2.040043 CTGGATCTGCCCTCCCCT 60.040 66.667 0.00 0.00 34.97 4.79
2970 3012 2.040464 TGGATCTGCCCTCCCCTC 60.040 66.667 0.00 0.00 34.97 4.30
2994 3036 1.379977 CCTGGCTCGTCTGGGTCTA 60.380 63.158 0.00 0.00 0.00 2.59
2996 3038 1.994507 CTGGCTCGTCTGGGTCTACG 61.995 65.000 0.00 0.00 40.40 3.51
3003 3045 2.683933 CTGGGTCTACGGCCACCT 60.684 66.667 2.24 0.00 32.69 4.00
3073 3467 5.417754 TCTTCTCTGATTTGTGCTCTGAT 57.582 39.130 0.00 0.00 0.00 2.90
3164 3558 2.749466 GCACTGCCATGGCCTTTATCTA 60.749 50.000 33.44 11.64 41.09 1.98
3207 3601 4.152284 GGAAACCCTAGGTCCAGTTATG 57.848 50.000 8.29 0.00 33.12 1.90
3250 3644 1.002250 CGGTGTCGTTCTCCTTCGTG 61.002 60.000 0.00 0.00 0.00 4.35
3313 3717 5.123979 GGATTGGTCATCTAGTTGTTGGTTC 59.876 44.000 0.83 0.00 31.67 3.62
3324 3728 0.106918 TGTTGGTTCGGGTTGCTTCT 60.107 50.000 0.00 0.00 0.00 2.85
3325 3729 0.591659 GTTGGTTCGGGTTGCTTCTC 59.408 55.000 0.00 0.00 0.00 2.87
3351 3755 2.290641 CGGTGAGTTTAGCTGTGCTTTT 59.709 45.455 0.00 0.00 40.44 2.27
3371 3775 1.372087 CTCTGTTTGGGCCGAGCATC 61.372 60.000 11.07 0.00 0.00 3.91
3377 3781 4.115199 GGGCCGAGCATCCCTTGT 62.115 66.667 0.00 0.00 39.46 3.16
3422 3826 4.680237 CCTCTTGCGTCCGTGCCA 62.680 66.667 0.00 0.00 0.00 4.92
3423 3827 2.434884 CTCTTGCGTCCGTGCCAT 60.435 61.111 0.00 0.00 0.00 4.40
3424 3828 2.741985 TCTTGCGTCCGTGCCATG 60.742 61.111 0.00 0.00 0.00 3.66
3425 3829 3.049674 CTTGCGTCCGTGCCATGT 61.050 61.111 0.00 0.00 0.00 3.21
3426 3830 1.739929 CTTGCGTCCGTGCCATGTA 60.740 57.895 0.00 0.00 0.00 2.29
3427 3831 1.078778 TTGCGTCCGTGCCATGTAT 60.079 52.632 0.00 0.00 0.00 2.29
3428 3832 0.675208 TTGCGTCCGTGCCATGTATT 60.675 50.000 0.00 0.00 0.00 1.89
3429 3833 1.351707 GCGTCCGTGCCATGTATTG 59.648 57.895 0.00 0.00 0.00 1.90
3430 3834 1.366111 GCGTCCGTGCCATGTATTGT 61.366 55.000 0.00 0.00 0.00 2.71
3431 3835 1.929230 CGTCCGTGCCATGTATTGTA 58.071 50.000 0.00 0.00 0.00 2.41
3432 3836 1.591158 CGTCCGTGCCATGTATTGTAC 59.409 52.381 0.00 0.00 0.00 2.90
3433 3837 1.937899 GTCCGTGCCATGTATTGTACC 59.062 52.381 0.00 0.00 0.00 3.34
3434 3838 1.555533 TCCGTGCCATGTATTGTACCA 59.444 47.619 0.00 0.00 0.00 3.25
3435 3839 1.668751 CCGTGCCATGTATTGTACCAC 59.331 52.381 0.00 0.00 0.00 4.16
3436 3840 1.668751 CGTGCCATGTATTGTACCACC 59.331 52.381 0.00 0.00 0.00 4.61
3437 3841 2.679639 CGTGCCATGTATTGTACCACCT 60.680 50.000 0.00 0.00 0.00 4.00
3438 3842 2.943033 GTGCCATGTATTGTACCACCTC 59.057 50.000 0.00 0.00 0.00 3.85
3439 3843 2.843730 TGCCATGTATTGTACCACCTCT 59.156 45.455 0.00 0.00 0.00 3.69
3440 3844 3.265737 TGCCATGTATTGTACCACCTCTT 59.734 43.478 0.00 0.00 0.00 2.85
3441 3845 3.627577 GCCATGTATTGTACCACCTCTTG 59.372 47.826 0.00 0.00 0.00 3.02
3442 3846 4.843728 CCATGTATTGTACCACCTCTTGT 58.156 43.478 0.00 0.00 0.00 3.16
3443 3847 5.628200 GCCATGTATTGTACCACCTCTTGTA 60.628 44.000 0.00 0.00 0.00 2.41
3444 3848 5.815740 CCATGTATTGTACCACCTCTTGTAC 59.184 44.000 0.00 0.00 38.22 2.90
3445 3849 6.351881 CCATGTATTGTACCACCTCTTGTACT 60.352 42.308 0.00 0.00 38.48 2.73
3446 3850 6.276832 TGTATTGTACCACCTCTTGTACTC 57.723 41.667 0.00 0.00 38.48 2.59
3447 3851 5.776208 TGTATTGTACCACCTCTTGTACTCA 59.224 40.000 0.00 0.00 38.48 3.41
3461 3865 9.616156 CCTCTTGTACTCACTCTAACTTCTATA 57.384 37.037 0.00 0.00 0.00 1.31
3485 3889 5.864418 ATGGAATGATATGCAAGCTTTGT 57.136 34.783 0.00 0.00 0.00 2.83
3488 3892 5.047164 TGGAATGATATGCAAGCTTTGTGTT 60.047 36.000 0.00 0.00 0.00 3.32
3516 3920 6.464834 CGCGAAAATAAAAGAATACCTGACAC 59.535 38.462 0.00 0.00 0.00 3.67
3547 3951 5.183140 TCTGCTAGACTTTATTGTTTTGGCC 59.817 40.000 0.00 0.00 0.00 5.36
3789 4198 8.939929 TGAGATGTTTCTAATTGTCTCATTGTC 58.060 33.333 0.00 0.00 37.69 3.18
3790 4199 8.853077 AGATGTTTCTAATTGTCTCATTGTCA 57.147 30.769 0.00 0.00 0.00 3.58
3807 4216 4.916983 TGTCACCTTTTGTTCTCCATTG 57.083 40.909 0.00 0.00 0.00 2.82
3884 4298 4.694509 GCCATCTAAGAAGCACTGATATGG 59.305 45.833 7.75 7.75 36.07 2.74
3925 4345 3.136763 CGCAGATATGGATGCAGAGTTT 58.863 45.455 0.00 0.00 42.68 2.66
3990 4418 9.798885 GCAGCGAGTATATAAATGAAAAAGTAG 57.201 33.333 0.00 0.00 0.00 2.57
4073 4572 1.733402 TTTGTTGTCTGCGGGCCTTG 61.733 55.000 0.84 0.00 0.00 3.61
4084 4583 1.241315 CGGGCCTTGGTTTACCTGTG 61.241 60.000 0.84 0.00 36.82 3.66
4304 5409 6.051074 TGTATATGACTGAACTCAATGCAGG 58.949 40.000 0.00 0.00 34.05 4.85
4322 5427 0.317854 GGTGAAAGCCTGAAACGTGC 60.318 55.000 0.00 0.00 0.00 5.34
4390 5501 0.889186 AGTTGGATTTTGTCGCGCCT 60.889 50.000 0.00 0.00 0.00 5.52
4499 5640 4.273480 GGAGCGTGCTGATAATGTGTTTAT 59.727 41.667 0.00 0.00 33.06 1.40
4500 5641 5.220854 GGAGCGTGCTGATAATGTGTTTATT 60.221 40.000 0.00 0.00 30.44 1.40
4501 5642 6.018262 GGAGCGTGCTGATAATGTGTTTATTA 60.018 38.462 0.00 0.00 30.44 0.98
4502 5643 7.307989 GGAGCGTGCTGATAATGTGTTTATTAT 60.308 37.037 0.00 0.00 36.28 1.28
4503 5644 7.355017 AGCGTGCTGATAATGTGTTTATTATG 58.645 34.615 0.00 0.00 34.31 1.90
4504 5645 7.012327 AGCGTGCTGATAATGTGTTTATTATGT 59.988 33.333 0.00 0.00 34.31 2.29
4505 5646 7.112009 GCGTGCTGATAATGTGTTTATTATGTG 59.888 37.037 0.00 0.00 34.31 3.21
4506 5647 8.122330 CGTGCTGATAATGTGTTTATTATGTGT 58.878 33.333 0.00 0.00 34.31 3.72
4507 5648 9.787532 GTGCTGATAATGTGTTTATTATGTGTT 57.212 29.630 0.00 0.00 34.31 3.32
4541 5682 4.408182 AAGGTATTGAGAGAATGGACCG 57.592 45.455 0.00 0.00 0.00 4.79
4542 5683 2.103263 AGGTATTGAGAGAATGGACCGC 59.897 50.000 0.00 0.00 0.00 5.68
4580 5721 8.189709 TGATGATGATGAACTATTTATAGCGC 57.810 34.615 0.00 0.00 33.68 5.92
4596 5996 2.024414 AGCGCCATAAATTCAGTTCCC 58.976 47.619 2.29 0.00 0.00 3.97
4610 6027 3.048600 CAGTTCCCCTCATATCCAGGAA 58.951 50.000 0.00 0.00 34.27 3.36
4612 6029 3.459969 AGTTCCCCTCATATCCAGGAAAC 59.540 47.826 0.00 0.00 38.30 2.78
4629 6046 4.680171 GAAACAGGGGTCGTTTCTTATG 57.320 45.455 8.19 0.00 45.64 1.90
4630 6047 2.109425 ACAGGGGTCGTTTCTTATGC 57.891 50.000 0.00 0.00 0.00 3.14
4631 6048 1.628846 ACAGGGGTCGTTTCTTATGCT 59.371 47.619 0.00 0.00 0.00 3.79
4632 6049 2.009774 CAGGGGTCGTTTCTTATGCTG 58.990 52.381 0.00 0.00 0.00 4.41
4633 6050 0.733150 GGGGTCGTTTCTTATGCTGC 59.267 55.000 0.00 0.00 0.00 5.25
4635 6052 1.398390 GGGTCGTTTCTTATGCTGCTG 59.602 52.381 0.00 0.00 0.00 4.41
4636 6053 1.202076 GGTCGTTTCTTATGCTGCTGC 60.202 52.381 8.89 8.89 40.20 5.25
4637 6054 1.734465 GTCGTTTCTTATGCTGCTGCT 59.266 47.619 17.00 5.09 40.48 4.24
4638 6055 1.733912 TCGTTTCTTATGCTGCTGCTG 59.266 47.619 17.00 0.77 40.48 4.41
4639 6056 1.792993 CGTTTCTTATGCTGCTGCTGC 60.793 52.381 22.51 22.51 40.48 5.25
4640 6057 1.471684 GTTTCTTATGCTGCTGCTGCT 59.528 47.619 27.67 17.30 40.48 4.24
4641 6058 1.092348 TTCTTATGCTGCTGCTGCTG 58.908 50.000 27.67 16.73 40.48 4.41
4647 6064 2.266372 CTGCTGCTGCTGCTCTCT 59.734 61.111 27.67 0.00 40.48 3.10
4648 6065 1.812093 CTGCTGCTGCTGCTCTCTC 60.812 63.158 27.67 3.30 40.48 3.20
4649 6066 2.233605 CTGCTGCTGCTGCTCTCTCT 62.234 60.000 27.67 0.00 40.48 3.10
4650 6067 1.078988 GCTGCTGCTGCTCTCTCTT 60.079 57.895 22.10 0.00 40.48 2.85
4651 6068 1.085501 GCTGCTGCTGCTCTCTCTTC 61.086 60.000 22.10 0.00 40.48 2.87
4652 6069 0.533491 CTGCTGCTGCTCTCTCTTCT 59.467 55.000 17.00 0.00 40.48 2.85
4653 6070 0.246910 TGCTGCTGCTCTCTCTTCTG 59.753 55.000 17.00 0.00 40.48 3.02
4654 6071 0.460635 GCTGCTGCTCTCTCTTCTGG 60.461 60.000 8.53 0.00 36.03 3.86
4655 6072 0.460635 CTGCTGCTCTCTCTTCTGGC 60.461 60.000 0.00 0.00 0.00 4.85
4656 6073 1.153389 GCTGCTCTCTCTTCTGGCC 60.153 63.158 0.00 0.00 0.00 5.36
4657 6074 1.616091 GCTGCTCTCTCTTCTGGCCT 61.616 60.000 3.32 0.00 0.00 5.19
4658 6075 1.774110 CTGCTCTCTCTTCTGGCCTA 58.226 55.000 3.32 0.00 0.00 3.93
4659 6076 2.318908 CTGCTCTCTCTTCTGGCCTAT 58.681 52.381 3.32 0.00 0.00 2.57
4660 6077 2.036217 CTGCTCTCTCTTCTGGCCTATG 59.964 54.545 3.32 0.00 0.00 2.23
4661 6078 2.315176 GCTCTCTCTTCTGGCCTATGA 58.685 52.381 3.32 0.00 0.00 2.15
4662 6079 2.697751 GCTCTCTCTTCTGGCCTATGAA 59.302 50.000 3.32 5.27 0.00 2.57
4663 6080 3.324556 GCTCTCTCTTCTGGCCTATGAAT 59.675 47.826 3.32 0.00 0.00 2.57
4664 6081 4.561326 GCTCTCTCTTCTGGCCTATGAATC 60.561 50.000 3.32 0.00 0.00 2.52
4665 6082 3.900601 TCTCTCTTCTGGCCTATGAATCC 59.099 47.826 3.32 0.00 0.00 3.01
4666 6083 3.903090 CTCTCTTCTGGCCTATGAATCCT 59.097 47.826 3.32 0.00 0.00 3.24
4667 6084 5.079998 TCTCTTCTGGCCTATGAATCCTA 57.920 43.478 3.32 0.00 0.00 2.94
4668 6085 5.659503 TCTCTTCTGGCCTATGAATCCTAT 58.340 41.667 3.32 0.00 0.00 2.57
4669 6086 5.483231 TCTCTTCTGGCCTATGAATCCTATG 59.517 44.000 3.32 0.00 0.00 2.23
4670 6087 5.158141 TCTTCTGGCCTATGAATCCTATGT 58.842 41.667 3.32 0.00 0.00 2.29
4671 6088 6.322931 TCTTCTGGCCTATGAATCCTATGTA 58.677 40.000 3.32 0.00 0.00 2.29
4672 6089 6.438741 TCTTCTGGCCTATGAATCCTATGTAG 59.561 42.308 3.32 0.00 0.00 2.74
4673 6090 5.026121 TCTGGCCTATGAATCCTATGTAGG 58.974 45.833 3.32 0.00 45.02 3.18
4677 6094 5.745312 CCTATGAATCCTATGTAGGCACA 57.255 43.478 1.02 2.58 43.31 4.57
4678 6095 5.728471 CCTATGAATCCTATGTAGGCACAG 58.272 45.833 1.02 0.00 43.31 3.66
4679 6096 3.475566 TGAATCCTATGTAGGCACAGC 57.524 47.619 1.02 0.00 43.31 4.40
4680 6097 2.771372 TGAATCCTATGTAGGCACAGCA 59.229 45.455 1.02 0.00 43.31 4.41
4681 6098 3.392285 TGAATCCTATGTAGGCACAGCAT 59.608 43.478 1.02 0.00 43.31 3.79
4682 6099 2.916702 TCCTATGTAGGCACAGCATG 57.083 50.000 1.02 0.00 43.31 4.06
4683 6100 2.397597 TCCTATGTAGGCACAGCATGA 58.602 47.619 0.00 0.00 43.31 3.07
4684 6101 2.366590 TCCTATGTAGGCACAGCATGAG 59.633 50.000 0.00 0.00 43.31 2.90
4685 6102 2.366590 CCTATGTAGGCACAGCATGAGA 59.633 50.000 0.00 0.00 38.30 3.27
4686 6103 3.007723 CCTATGTAGGCACAGCATGAGAT 59.992 47.826 0.00 0.00 38.30 2.75
4687 6104 2.320745 TGTAGGCACAGCATGAGATG 57.679 50.000 0.00 0.00 39.69 2.90
4688 6105 1.832998 TGTAGGCACAGCATGAGATGA 59.167 47.619 0.00 0.00 39.69 2.92
4689 6106 2.436911 TGTAGGCACAGCATGAGATGAT 59.563 45.455 0.00 0.00 39.69 2.45
4699 6116 5.113446 AGCATGAGATGATGAAGGTTTCT 57.887 39.130 0.00 0.00 0.00 2.52
4700 6117 5.507637 AGCATGAGATGATGAAGGTTTCTT 58.492 37.500 0.00 0.00 35.62 2.52
4720 6137 2.709213 TCATGATTGTTCATCGCACCA 58.291 42.857 0.00 0.00 40.70 4.17
4736 6153 2.049802 CAGGGCAGCAAACAAGCG 60.050 61.111 0.00 0.00 40.15 4.68
4745 6162 1.086696 GCAAACAAGCGCCAGAGATA 58.913 50.000 2.29 0.00 0.00 1.98
4759 6176 4.711399 CCAGAGATATGCATCACTTTCCA 58.289 43.478 0.19 0.00 30.60 3.53
4761 6178 5.454329 CCAGAGATATGCATCACTTTCCAGA 60.454 44.000 0.19 0.00 30.60 3.86
4779 6223 0.248990 GAGAGATGCTGCAGAGACGG 60.249 60.000 20.43 0.00 0.00 4.79
4786 6230 1.373497 CTGCAGAGACGGCGTTCTT 60.373 57.895 16.19 2.67 0.00 2.52
4787 6231 1.621301 CTGCAGAGACGGCGTTCTTG 61.621 60.000 16.19 13.71 0.00 3.02
4788 6232 3.016474 GCAGAGACGGCGTTCTTGC 62.016 63.158 16.19 19.56 0.00 4.01
4789 6233 1.664649 CAGAGACGGCGTTCTTGCA 60.665 57.895 16.19 0.00 36.28 4.08
4790 6234 1.373497 AGAGACGGCGTTCTTGCAG 60.373 57.895 16.19 0.00 36.28 4.41
4792 6236 1.618640 GAGACGGCGTTCTTGCAGAC 61.619 60.000 16.19 0.00 36.28 3.51
4793 6237 1.664965 GACGGCGTTCTTGCAGACT 60.665 57.895 16.19 0.00 36.28 3.24
4794 6238 0.388134 GACGGCGTTCTTGCAGACTA 60.388 55.000 16.19 0.00 36.28 2.59
4795 6239 0.666577 ACGGCGTTCTTGCAGACTAC 60.667 55.000 6.77 0.00 36.28 2.73
4796 6240 0.388649 CGGCGTTCTTGCAGACTACT 60.389 55.000 0.00 0.00 36.28 2.57
4797 6241 1.351153 GGCGTTCTTGCAGACTACTC 58.649 55.000 0.00 0.00 36.28 2.59
4798 6242 1.351153 GCGTTCTTGCAGACTACTCC 58.649 55.000 0.00 0.00 34.15 3.85
4799 6243 1.067495 GCGTTCTTGCAGACTACTCCT 60.067 52.381 0.00 0.00 34.15 3.69
4800 6244 2.163815 GCGTTCTTGCAGACTACTCCTA 59.836 50.000 0.00 0.00 34.15 2.94
4801 6245 3.760537 CGTTCTTGCAGACTACTCCTAC 58.239 50.000 0.00 0.00 0.00 3.18
4802 6246 3.190744 CGTTCTTGCAGACTACTCCTACA 59.809 47.826 0.00 0.00 0.00 2.74
4803 6247 4.142359 CGTTCTTGCAGACTACTCCTACAT 60.142 45.833 0.00 0.00 0.00 2.29
4804 6248 5.622460 CGTTCTTGCAGACTACTCCTACATT 60.622 44.000 0.00 0.00 0.00 2.71
4805 6249 5.330455 TCTTGCAGACTACTCCTACATTG 57.670 43.478 0.00 0.00 0.00 2.82
4806 6250 3.526931 TGCAGACTACTCCTACATTGC 57.473 47.619 0.00 0.00 0.00 3.56
4807 6251 3.099905 TGCAGACTACTCCTACATTGCT 58.900 45.455 0.00 0.00 0.00 3.91
4808 6252 3.515502 TGCAGACTACTCCTACATTGCTT 59.484 43.478 0.00 0.00 0.00 3.91
4809 6253 4.020218 TGCAGACTACTCCTACATTGCTTT 60.020 41.667 0.00 0.00 0.00 3.51
4810 6254 4.568760 GCAGACTACTCCTACATTGCTTTC 59.431 45.833 0.00 0.00 0.00 2.62
4811 6255 5.625656 GCAGACTACTCCTACATTGCTTTCT 60.626 44.000 0.00 0.00 0.00 2.52
4812 6256 6.402222 CAGACTACTCCTACATTGCTTTCTT 58.598 40.000 0.00 0.00 0.00 2.52
4813 6257 6.876257 CAGACTACTCCTACATTGCTTTCTTT 59.124 38.462 0.00 0.00 0.00 2.52
4814 6258 7.389053 CAGACTACTCCTACATTGCTTTCTTTT 59.611 37.037 0.00 0.00 0.00 2.27
4815 6259 7.939588 AGACTACTCCTACATTGCTTTCTTTTT 59.060 33.333 0.00 0.00 0.00 1.94
4816 6260 8.100508 ACTACTCCTACATTGCTTTCTTTTTC 57.899 34.615 0.00 0.00 0.00 2.29
4817 6261 7.939588 ACTACTCCTACATTGCTTTCTTTTTCT 59.060 33.333 0.00 0.00 0.00 2.52
4818 6262 7.588497 ACTCCTACATTGCTTTCTTTTTCTT 57.412 32.000 0.00 0.00 0.00 2.52
4819 6263 7.652727 ACTCCTACATTGCTTTCTTTTTCTTC 58.347 34.615 0.00 0.00 0.00 2.87
4820 6264 7.503902 ACTCCTACATTGCTTTCTTTTTCTTCT 59.496 33.333 0.00 0.00 0.00 2.85
4821 6265 7.875971 TCCTACATTGCTTTCTTTTTCTTCTC 58.124 34.615 0.00 0.00 0.00 2.87
4822 6266 7.721399 TCCTACATTGCTTTCTTTTTCTTCTCT 59.279 33.333 0.00 0.00 0.00 3.10
4823 6267 8.020244 CCTACATTGCTTTCTTTTTCTTCTCTC 58.980 37.037 0.00 0.00 0.00 3.20
4824 6268 6.743110 ACATTGCTTTCTTTTTCTTCTCTCC 58.257 36.000 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.204865 TATGGTTTGGACCCCCGCAG 62.205 60.000 0.00 0.00 45.92 5.18
26 27 4.347000 TCCTACATAGCTATGGTTTGGACC 59.653 45.833 31.87 0.00 46.71 4.46
36 37 1.893801 GCCACGGTCCTACATAGCTAT 59.106 52.381 0.00 0.00 0.00 2.97
38 39 0.686441 TGCCACGGTCCTACATAGCT 60.686 55.000 0.00 0.00 0.00 3.32
41 42 1.669049 CGGTGCCACGGTCCTACATA 61.669 60.000 0.00 0.00 0.00 2.29
60 61 1.477685 TCCCCTTTGAGTGGGACGAC 61.478 60.000 0.00 0.00 46.01 4.34
61 62 1.152204 TCCCCTTTGAGTGGGACGA 60.152 57.895 0.00 0.00 46.01 4.20
190 195 8.852135 TCAAAATAGCAGCATATCAAATCATCA 58.148 29.630 0.00 0.00 0.00 3.07
192 197 7.813148 GCTCAAAATAGCAGCATATCAAATCAT 59.187 33.333 0.00 0.00 42.30 2.45
206 211 1.720805 TTCGCGAGCTCAAAATAGCA 58.279 45.000 15.40 0.00 45.30 3.49
207 212 4.653806 ATATTCGCGAGCTCAAAATAGC 57.346 40.909 15.40 6.75 43.11 2.97
243 249 6.199376 TCCAACCTTATCCCCTAAAATTTCC 58.801 40.000 0.00 0.00 0.00 3.13
244 250 7.563556 TCATCCAACCTTATCCCCTAAAATTTC 59.436 37.037 0.00 0.00 0.00 2.17
258 264 3.907474 TGGAAGTCAGTCATCCAACCTTA 59.093 43.478 0.00 0.00 40.38 2.69
272 278 0.036732 GGGCAGTGATGTGGAAGTCA 59.963 55.000 0.00 0.00 0.00 3.41
273 279 1.021390 CGGGCAGTGATGTGGAAGTC 61.021 60.000 0.00 0.00 0.00 3.01
274 280 1.003355 CGGGCAGTGATGTGGAAGT 60.003 57.895 0.00 0.00 0.00 3.01
325 331 0.806868 GACCATCACTACGGACACGA 59.193 55.000 0.00 0.00 44.60 4.35
330 336 3.556213 CCAAAGTTGACCATCACTACGGA 60.556 47.826 0.00 0.00 0.00 4.69
335 341 4.288105 AGATCTCCAAAGTTGACCATCACT 59.712 41.667 0.00 0.00 0.00 3.41
336 342 4.583871 AGATCTCCAAAGTTGACCATCAC 58.416 43.478 0.00 0.00 0.00 3.06
340 346 3.576982 ACGTAGATCTCCAAAGTTGACCA 59.423 43.478 0.00 0.00 0.00 4.02
348 354 2.826128 ACTGCTGACGTAGATCTCCAAA 59.174 45.455 0.00 0.00 0.00 3.28
359 365 1.749634 GGGAGTATACACTGCTGACGT 59.250 52.381 5.50 0.00 42.44 4.34
369 375 1.682451 GCCGCACAGGGGAGTATACA 61.682 60.000 5.50 0.00 41.48 2.29
371 377 1.075525 AGCCGCACAGGGGAGTATA 60.076 57.895 4.11 0.00 41.48 1.47
409 415 2.567615 GCCATACCGACCTTGATAGGAT 59.432 50.000 0.00 0.00 45.05 3.24
465 471 6.183360 GCCGGTGTTAAAAGATACTGCTAAAT 60.183 38.462 1.90 0.00 0.00 1.40
512 518 4.154918 GTGCACTCCTAATTCCTGAGTTTG 59.845 45.833 10.32 0.00 37.25 2.93
517 523 3.582647 TCTTGTGCACTCCTAATTCCTGA 59.417 43.478 19.41 0.00 0.00 3.86
518 524 3.942829 TCTTGTGCACTCCTAATTCCTG 58.057 45.455 19.41 0.00 0.00 3.86
556 562 3.903090 AGACAATTCCTTGGAATGGCAAA 59.097 39.130 14.81 0.00 36.64 3.68
566 572 5.300286 AGGAACAAGTCAAGACAATTCCTTG 59.700 40.000 18.93 9.68 41.91 3.61
572 578 4.957296 ACGTAGGAACAAGTCAAGACAAT 58.043 39.130 2.72 0.00 0.00 2.71
603 610 1.134818 TCGCATCCACGTAAAGCTCAT 60.135 47.619 0.00 0.00 0.00 2.90
604 611 0.245266 TCGCATCCACGTAAAGCTCA 59.755 50.000 0.00 0.00 0.00 4.26
607 614 1.006832 ACATCGCATCCACGTAAAGC 58.993 50.000 0.00 0.00 0.00 3.51
608 615 1.999735 ACACATCGCATCCACGTAAAG 59.000 47.619 0.00 0.00 0.00 1.85
610 617 2.164827 ACTACACATCGCATCCACGTAA 59.835 45.455 0.00 0.00 0.00 3.18
611 618 1.746787 ACTACACATCGCATCCACGTA 59.253 47.619 0.00 0.00 0.00 3.57
612 619 0.530744 ACTACACATCGCATCCACGT 59.469 50.000 0.00 0.00 0.00 4.49
613 620 1.640428 AACTACACATCGCATCCACG 58.360 50.000 0.00 0.00 0.00 4.94
614 621 2.351726 GGAAACTACACATCGCATCCAC 59.648 50.000 0.00 0.00 0.00 4.02
615 622 2.236146 AGGAAACTACACATCGCATCCA 59.764 45.455 0.00 0.00 40.61 3.41
616 623 2.866762 GAGGAAACTACACATCGCATCC 59.133 50.000 0.00 0.00 44.43 3.51
637 645 5.827666 ACTATTCGTTTCCTGTGTTTTTGG 58.172 37.500 0.00 0.00 0.00 3.28
696 704 4.400251 ACACACAAGAATAGATGCATTGGG 59.600 41.667 0.00 0.00 0.00 4.12
710 719 6.993786 TCATAGAAAAACACACACACAAGA 57.006 33.333 0.00 0.00 0.00 3.02
716 725 8.968242 GGAGAATTTTCATAGAAAAACACACAC 58.032 33.333 8.75 0.00 31.35 3.82
718 727 9.528018 TTGGAGAATTTTCATAGAAAAACACAC 57.472 29.630 8.75 2.24 31.35 3.82
738 747 1.704628 TGGCCTCATTCTGTTTGGAGA 59.295 47.619 3.32 0.00 0.00 3.71
742 751 2.289010 GGGTTTGGCCTCATTCTGTTTG 60.289 50.000 3.32 0.00 37.43 2.93
743 752 1.970640 GGGTTTGGCCTCATTCTGTTT 59.029 47.619 3.32 0.00 37.43 2.83
744 753 1.133199 TGGGTTTGGCCTCATTCTGTT 60.133 47.619 3.32 0.00 37.43 3.16
745 754 0.482446 TGGGTTTGGCCTCATTCTGT 59.518 50.000 3.32 0.00 37.43 3.41
748 757 1.546029 GAACTGGGTTTGGCCTCATTC 59.454 52.381 3.32 0.00 37.43 2.67
763 772 2.551459 CCAGAAAGCAGGTTGAGAACTG 59.449 50.000 0.00 0.00 37.76 3.16
764 773 2.487986 CCCAGAAAGCAGGTTGAGAACT 60.488 50.000 0.00 0.00 0.00 3.01
766 775 1.494721 ACCCAGAAAGCAGGTTGAGAA 59.505 47.619 0.00 0.00 0.00 2.87
774 791 0.670162 CCACAACACCCAGAAAGCAG 59.330 55.000 0.00 0.00 0.00 4.24
792 809 2.710902 GCCAAAGACCCGCATTCCC 61.711 63.158 0.00 0.00 0.00 3.97
793 810 2.710902 GGCCAAAGACCCGCATTCC 61.711 63.158 0.00 0.00 0.00 3.01
794 811 2.710902 GGGCCAAAGACCCGCATTC 61.711 63.158 4.39 0.00 37.67 2.67
795 812 2.679996 GGGCCAAAGACCCGCATT 60.680 61.111 4.39 0.00 37.67 3.56
866 883 1.079127 GGGCGAGCTTTCACTGCTA 60.079 57.895 0.00 0.00 41.30 3.49
867 884 2.359230 GGGCGAGCTTTCACTGCT 60.359 61.111 0.00 0.00 44.24 4.24
868 885 1.968540 AAGGGCGAGCTTTCACTGC 60.969 57.895 0.00 0.00 0.00 4.40
869 886 1.580845 CCAAGGGCGAGCTTTCACTG 61.581 60.000 0.00 0.00 0.00 3.66
870 887 1.302832 CCAAGGGCGAGCTTTCACT 60.303 57.895 0.00 0.00 0.00 3.41
871 888 0.889186 TTCCAAGGGCGAGCTTTCAC 60.889 55.000 0.00 0.00 0.00 3.18
872 889 0.889186 GTTCCAAGGGCGAGCTTTCA 60.889 55.000 0.00 0.00 0.00 2.69
873 890 1.876664 GTTCCAAGGGCGAGCTTTC 59.123 57.895 0.00 0.00 0.00 2.62
874 891 1.966451 CGTTCCAAGGGCGAGCTTT 60.966 57.895 0.00 0.00 0.00 3.51
875 892 2.358737 CGTTCCAAGGGCGAGCTT 60.359 61.111 0.00 0.00 0.00 3.74
876 893 4.394712 CCGTTCCAAGGGCGAGCT 62.395 66.667 0.00 0.00 0.00 4.09
877 894 3.894547 TTCCGTTCCAAGGGCGAGC 62.895 63.158 5.77 0.00 34.04 5.03
878 895 0.887387 TTTTCCGTTCCAAGGGCGAG 60.887 55.000 5.77 0.00 34.04 5.03
879 896 0.887387 CTTTTCCGTTCCAAGGGCGA 60.887 55.000 5.77 0.00 34.04 5.54
880 897 0.887387 TCTTTTCCGTTCCAAGGGCG 60.887 55.000 0.00 0.00 34.04 6.13
881 898 1.324383 TTCTTTTCCGTTCCAAGGGC 58.676 50.000 0.00 0.00 34.04 5.19
986 1010 3.492482 GGTTTTCATTCTGGTGGTGGTTG 60.492 47.826 0.00 0.00 0.00 3.77
1401 1434 2.266055 CGCCTGGAGACCAAGGAC 59.734 66.667 0.00 0.00 30.80 3.85
1605 1638 1.484240 CACCCCAAAACTTCAAAGCCA 59.516 47.619 0.00 0.00 0.00 4.75
1644 1677 2.626255 TTAACACCCGGTGCAAGGCA 62.626 55.000 17.99 0.00 36.98 4.75
1650 1683 2.281900 TGCCTTAACACCCGGTGC 60.282 61.111 17.99 2.80 36.98 5.01
1662 1695 1.200020 GCGAACACAATAAGCTGCCTT 59.800 47.619 0.00 0.00 35.05 4.35
1695 1728 4.457496 GCCAGGTAGCGCTGCTCA 62.457 66.667 24.82 0.00 40.44 4.26
1963 1996 2.289694 ACGAAAGCAGCCAATAGAGTGT 60.290 45.455 0.00 0.00 0.00 3.55
2155 2188 4.227300 TGTGGCAATACCCTGAGAGTTAAT 59.773 41.667 0.00 0.00 37.83 1.40
2160 2193 2.569059 CATGTGGCAATACCCTGAGAG 58.431 52.381 0.00 0.00 37.83 3.20
2234 2267 0.984230 TTGCCACACCTTCCTCCTAG 59.016 55.000 0.00 0.00 0.00 3.02
2474 2507 8.969260 TCACAATATCTGTATTCAAGCAATCT 57.031 30.769 0.00 0.00 36.10 2.40
2528 2561 1.992667 TCAGCGACAATTGCTTACTCG 59.007 47.619 5.05 8.16 41.72 4.18
2587 2620 4.290969 GTTTCAAACTTGCCAGCTAACTC 58.709 43.478 0.00 0.00 0.00 3.01
2591 2626 2.884639 GAGGTTTCAAACTTGCCAGCTA 59.115 45.455 0.00 0.00 0.00 3.32
2594 2629 3.799281 TTGAGGTTTCAAACTTGCCAG 57.201 42.857 0.00 0.00 40.26 4.85
2864 2906 1.798813 GCGTGTCCGAATCAAAGAAGT 59.201 47.619 0.00 0.00 35.63 3.01
2896 2938 0.979665 CAAGGAGCTGGAAGGAGACA 59.020 55.000 0.00 0.00 0.00 3.41
2921 2963 4.008933 GACAGCAGGGTCGCCAGT 62.009 66.667 0.00 0.00 0.00 4.00
2961 3003 1.461075 CAGGATCTGGAGGGGAGGG 60.461 68.421 0.00 0.00 0.00 4.30
2962 3004 4.309879 CAGGATCTGGAGGGGAGG 57.690 66.667 0.00 0.00 0.00 4.30
2994 3036 2.351276 GGATGTGAAGGTGGCCGT 59.649 61.111 0.00 0.00 0.00 5.68
2996 3038 2.043953 GGGGATGTGAAGGTGGCC 60.044 66.667 0.00 0.00 0.00 5.36
3003 3045 1.299648 CGCAGGAAGGGGATGTGAA 59.700 57.895 0.00 0.00 0.00 3.18
3095 3489 2.190313 CCGCTGCCAGCATAGGAA 59.810 61.111 18.21 0.00 42.58 3.36
3159 3553 4.404185 TGCTAGAAGAGGGCCATAGATA 57.596 45.455 6.18 0.00 0.00 1.98
3164 3558 1.698532 CTGATGCTAGAAGAGGGCCAT 59.301 52.381 6.18 0.00 0.00 4.40
3195 3589 1.762957 CCGATCCACATAACTGGACCT 59.237 52.381 0.00 0.00 43.38 3.85
3201 3595 0.104304 GCCGTCCGATCCACATAACT 59.896 55.000 0.00 0.00 0.00 2.24
3250 3644 1.065551 AGCAAACAAGACAACGCCTTC 59.934 47.619 0.00 0.00 0.00 3.46
3257 3651 1.646540 CCGCGAGCAAACAAGACAA 59.353 52.632 8.23 0.00 0.00 3.18
3282 3676 3.456277 ACTAGATGACCAATCCAGAACCC 59.544 47.826 0.00 0.00 35.72 4.11
3313 3717 2.747855 GCCCTGAGAAGCAACCCG 60.748 66.667 0.00 0.00 0.00 5.28
3324 3728 1.192146 AGCTAAACTCACCGCCCTGA 61.192 55.000 0.00 0.00 0.00 3.86
3325 3729 1.021390 CAGCTAAACTCACCGCCCTG 61.021 60.000 0.00 0.00 0.00 4.45
3351 3755 1.841302 ATGCTCGGCCCAAACAGAGA 61.841 55.000 7.21 0.00 32.84 3.10
3371 3775 1.415659 CCCAGAGCAGAGATACAAGGG 59.584 57.143 0.00 0.00 0.00 3.95
3420 3824 4.843728 ACAAGAGGTGGTACAATACATGG 58.156 43.478 0.00 0.00 44.16 3.66
3421 3825 6.640518 AGTACAAGAGGTGGTACAATACATG 58.359 40.000 0.00 0.00 44.16 3.21
3422 3826 6.439375 TGAGTACAAGAGGTGGTACAATACAT 59.561 38.462 0.00 0.00 44.16 2.29
3423 3827 5.776208 TGAGTACAAGAGGTGGTACAATACA 59.224 40.000 0.00 0.00 44.16 2.29
3424 3828 6.071503 AGTGAGTACAAGAGGTGGTACAATAC 60.072 42.308 0.00 0.00 44.16 1.89
3425 3829 6.014647 AGTGAGTACAAGAGGTGGTACAATA 58.985 40.000 0.00 0.00 44.16 1.90
3426 3830 4.838986 AGTGAGTACAAGAGGTGGTACAAT 59.161 41.667 0.00 0.00 44.16 2.71
3427 3831 4.220724 AGTGAGTACAAGAGGTGGTACAA 58.779 43.478 0.00 0.00 44.16 2.41
3428 3832 3.825014 GAGTGAGTACAAGAGGTGGTACA 59.175 47.826 0.00 0.00 41.74 2.90
3429 3833 4.080687 AGAGTGAGTACAAGAGGTGGTAC 58.919 47.826 0.00 0.00 40.06 3.34
3430 3834 4.383931 AGAGTGAGTACAAGAGGTGGTA 57.616 45.455 0.00 0.00 0.00 3.25
3431 3835 3.246416 AGAGTGAGTACAAGAGGTGGT 57.754 47.619 0.00 0.00 0.00 4.16
3432 3836 4.767928 AGTTAGAGTGAGTACAAGAGGTGG 59.232 45.833 0.00 0.00 0.00 4.61
3433 3837 5.968528 AGTTAGAGTGAGTACAAGAGGTG 57.031 43.478 0.00 0.00 0.00 4.00
3434 3838 6.308566 AGAAGTTAGAGTGAGTACAAGAGGT 58.691 40.000 0.00 0.00 0.00 3.85
3435 3839 6.827586 AGAAGTTAGAGTGAGTACAAGAGG 57.172 41.667 0.00 0.00 0.00 3.69
3461 3865 6.537301 CACAAAGCTTGCATATCATTCCATTT 59.463 34.615 0.00 0.00 0.00 2.32
3485 3889 8.077386 AGGTATTCTTTTATTTTCGCGAAAACA 58.923 29.630 40.16 31.25 42.32 2.83
3488 3892 7.747357 GTCAGGTATTCTTTTATTTTCGCGAAA 59.253 33.333 29.22 29.22 0.00 3.46
3516 3920 9.696917 AAACAATAAAGTCTAGCAGAAAATTGG 57.303 29.630 0.00 0.00 0.00 3.16
3547 3951 5.207768 GTCATGTCAAGCAAACAACACTAG 58.792 41.667 0.00 0.00 0.00 2.57
3789 4198 3.891366 AGACCAATGGAGAACAAAAGGTG 59.109 43.478 6.16 0.00 33.46 4.00
3790 4199 4.141158 AGAGACCAATGGAGAACAAAAGGT 60.141 41.667 6.16 0.00 35.22 3.50
3807 4216 5.181748 AGCAACAGTTATGATGAAGAGACC 58.818 41.667 0.00 0.00 31.12 3.85
3884 4298 2.675317 CGTCTCCAACTCTCCATGTTCC 60.675 54.545 0.00 0.00 0.00 3.62
3925 4345 6.894654 TGTTTCTGGAAAATGCCATATCCTAA 59.105 34.615 9.95 3.59 37.30 2.69
3990 4418 4.445453 TGTCCTCATTACATCACATGCTC 58.555 43.478 0.00 0.00 0.00 4.26
4030 4529 5.815581 TGGCCACTACTTTGATCTTACATT 58.184 37.500 0.00 0.00 0.00 2.71
4050 4549 1.080569 CCCGCAGACAACAAATGGC 60.081 57.895 0.00 0.00 37.30 4.40
4073 4572 2.486592 GCCACATACACACAGGTAAACC 59.513 50.000 0.00 0.00 0.00 3.27
4084 4583 3.242870 GCATTAAGCTCAGCCACATACAC 60.243 47.826 0.00 0.00 41.15 2.90
4183 4696 7.448420 ACTTGATCCCACATCTTACAGATATG 58.552 38.462 0.00 0.00 32.12 1.78
4304 5409 0.657368 CGCACGTTTCAGGCTTTCAC 60.657 55.000 0.00 0.00 0.00 3.18
4322 5427 2.069273 GTCTTTCCAGTCACACCATCG 58.931 52.381 0.00 0.00 0.00 3.84
4351 5460 4.261801 ACTCGAACCCCAGAACATATTTG 58.738 43.478 0.00 0.00 0.00 2.32
4352 5461 4.569719 ACTCGAACCCCAGAACATATTT 57.430 40.909 0.00 0.00 0.00 1.40
4470 5611 1.448119 TATCAGCACGCTCCCGAGAG 61.448 60.000 0.00 0.00 43.57 3.20
4481 5622 9.787532 AACACATAATAAACACATTATCAGCAC 57.212 29.630 0.00 0.00 32.96 4.40
4517 5658 5.648092 CGGTCCATTCTCTCAATACCTTTTT 59.352 40.000 0.00 0.00 0.00 1.94
4518 5659 5.186198 CGGTCCATTCTCTCAATACCTTTT 58.814 41.667 0.00 0.00 0.00 2.27
4523 5664 3.179443 TGCGGTCCATTCTCTCAATAC 57.821 47.619 0.00 0.00 0.00 1.89
4524 5665 4.422073 AATGCGGTCCATTCTCTCAATA 57.578 40.909 0.00 0.00 40.02 1.90
4537 5678 6.304356 TCATCATCAATAAAGAATGCGGTC 57.696 37.500 0.00 0.00 0.00 4.79
4541 5682 9.908152 TTCATCATCATCATCAATAAAGAATGC 57.092 29.630 0.00 0.00 0.00 3.56
4577 5718 1.067060 GGGGAACTGAATTTATGGCGC 59.933 52.381 0.00 0.00 0.00 6.53
4578 5719 2.618709 GAGGGGAACTGAATTTATGGCG 59.381 50.000 0.00 0.00 0.00 5.69
4579 5720 3.631250 TGAGGGGAACTGAATTTATGGC 58.369 45.455 0.00 0.00 0.00 4.40
4580 5721 6.660949 GGATATGAGGGGAACTGAATTTATGG 59.339 42.308 0.00 0.00 0.00 2.74
4596 5996 2.107204 CCCCTGTTTCCTGGATATGAGG 59.893 54.545 0.00 2.97 31.55 3.86
4610 6027 2.039879 AGCATAAGAAACGACCCCTGTT 59.960 45.455 0.00 0.00 0.00 3.16
4612 6029 2.009774 CAGCATAAGAAACGACCCCTG 58.990 52.381 0.00 0.00 0.00 4.45
4630 6047 1.812093 GAGAGAGCAGCAGCAGCAG 60.812 63.158 12.92 0.00 45.49 4.24
4631 6048 1.828461 AAGAGAGAGCAGCAGCAGCA 61.828 55.000 12.92 0.00 45.49 4.41
4632 6049 1.078988 AAGAGAGAGCAGCAGCAGC 60.079 57.895 3.17 0.46 45.49 5.25
4633 6050 0.533491 AGAAGAGAGAGCAGCAGCAG 59.467 55.000 3.17 0.00 45.49 4.24
4635 6052 0.460635 CCAGAAGAGAGAGCAGCAGC 60.461 60.000 0.00 0.00 42.56 5.25
4636 6053 0.460635 GCCAGAAGAGAGAGCAGCAG 60.461 60.000 0.00 0.00 0.00 4.24
4637 6054 1.595882 GCCAGAAGAGAGAGCAGCA 59.404 57.895 0.00 0.00 0.00 4.41
4638 6055 1.153389 GGCCAGAAGAGAGAGCAGC 60.153 63.158 0.00 0.00 0.00 5.25
4639 6056 1.774110 TAGGCCAGAAGAGAGAGCAG 58.226 55.000 5.01 0.00 0.00 4.24
4640 6057 2.037901 CATAGGCCAGAAGAGAGAGCA 58.962 52.381 5.01 0.00 0.00 4.26
4641 6058 2.315176 TCATAGGCCAGAAGAGAGAGC 58.685 52.381 5.01 0.00 0.00 4.09
4642 6059 4.021192 GGATTCATAGGCCAGAAGAGAGAG 60.021 50.000 5.01 0.00 0.00 3.20
4643 6060 3.900601 GGATTCATAGGCCAGAAGAGAGA 59.099 47.826 5.01 0.00 0.00 3.10
4644 6061 3.903090 AGGATTCATAGGCCAGAAGAGAG 59.097 47.826 5.01 0.00 0.00 3.20
4645 6062 3.933886 AGGATTCATAGGCCAGAAGAGA 58.066 45.455 5.01 0.00 0.00 3.10
4646 6063 5.248020 ACATAGGATTCATAGGCCAGAAGAG 59.752 44.000 5.01 0.00 0.00 2.85
4647 6064 5.158141 ACATAGGATTCATAGGCCAGAAGA 58.842 41.667 5.01 0.00 0.00 2.87
4648 6065 5.495926 ACATAGGATTCATAGGCCAGAAG 57.504 43.478 5.01 0.00 0.00 2.85
4649 6066 5.485353 CCTACATAGGATTCATAGGCCAGAA 59.515 44.000 5.01 6.64 46.63 3.02
4650 6067 5.026121 CCTACATAGGATTCATAGGCCAGA 58.974 45.833 5.01 0.00 46.63 3.86
4651 6068 5.350504 CCTACATAGGATTCATAGGCCAG 57.649 47.826 5.01 0.00 46.63 4.85
4655 6072 5.728471 CTGTGCCTACATAGGATTCATAGG 58.272 45.833 9.25 0.00 46.63 2.57
4656 6073 5.174395 GCTGTGCCTACATAGGATTCATAG 58.826 45.833 9.25 6.35 46.63 2.23
4657 6074 4.592778 TGCTGTGCCTACATAGGATTCATA 59.407 41.667 9.25 0.00 46.63 2.15
4658 6075 3.392285 TGCTGTGCCTACATAGGATTCAT 59.608 43.478 9.25 0.00 46.63 2.57
4659 6076 2.771372 TGCTGTGCCTACATAGGATTCA 59.229 45.455 9.25 3.66 46.63 2.57
4660 6077 3.475566 TGCTGTGCCTACATAGGATTC 57.524 47.619 9.25 0.00 46.63 2.52
4661 6078 3.392285 TCATGCTGTGCCTACATAGGATT 59.608 43.478 9.25 0.00 42.15 3.01
4662 6079 2.974794 TCATGCTGTGCCTACATAGGAT 59.025 45.455 9.25 0.00 44.94 3.24
4663 6080 2.366590 CTCATGCTGTGCCTACATAGGA 59.633 50.000 9.25 0.00 46.63 2.94
4664 6081 2.366590 TCTCATGCTGTGCCTACATAGG 59.633 50.000 0.09 0.09 46.42 2.57
4665 6082 3.740631 TCTCATGCTGTGCCTACATAG 57.259 47.619 0.00 0.00 38.02 2.23
4666 6083 3.642848 TCATCTCATGCTGTGCCTACATA 59.357 43.478 0.00 0.00 35.97 2.29
4667 6084 2.436911 TCATCTCATGCTGTGCCTACAT 59.563 45.455 0.00 0.00 35.97 2.29
4668 6085 1.832998 TCATCTCATGCTGTGCCTACA 59.167 47.619 0.00 0.00 35.08 2.74
4669 6086 2.609427 TCATCTCATGCTGTGCCTAC 57.391 50.000 0.00 0.00 0.00 3.18
4670 6087 2.701951 TCATCATCTCATGCTGTGCCTA 59.298 45.455 0.00 0.00 0.00 3.93
4671 6088 1.489230 TCATCATCTCATGCTGTGCCT 59.511 47.619 0.00 0.00 0.00 4.75
4672 6089 1.963172 TCATCATCTCATGCTGTGCC 58.037 50.000 0.00 0.00 0.00 5.01
4673 6090 2.290916 CCTTCATCATCTCATGCTGTGC 59.709 50.000 0.00 0.00 0.00 4.57
4674 6091 3.542648 ACCTTCATCATCTCATGCTGTG 58.457 45.455 0.00 0.00 0.00 3.66
4675 6092 3.928005 ACCTTCATCATCTCATGCTGT 57.072 42.857 0.00 0.00 0.00 4.40
4676 6093 4.882427 AGAAACCTTCATCATCTCATGCTG 59.118 41.667 0.00 0.00 0.00 4.41
4677 6094 5.113446 AGAAACCTTCATCATCTCATGCT 57.887 39.130 0.00 0.00 0.00 3.79
4678 6095 5.356190 TGAAGAAACCTTCATCATCTCATGC 59.644 40.000 3.97 0.00 43.53 4.06
4679 6096 6.997239 TGAAGAAACCTTCATCATCTCATG 57.003 37.500 3.97 0.00 43.53 3.07
4690 6107 6.744537 CGATGAACAATCATGAAGAAACCTTC 59.255 38.462 0.00 0.00 46.30 3.46
4691 6108 6.615088 CGATGAACAATCATGAAGAAACCTT 58.385 36.000 0.00 0.00 46.30 3.50
4692 6109 5.392380 GCGATGAACAATCATGAAGAAACCT 60.392 40.000 0.00 0.00 46.30 3.50
4693 6110 4.795278 GCGATGAACAATCATGAAGAAACC 59.205 41.667 0.00 0.00 46.30 3.27
4694 6111 5.284660 GTGCGATGAACAATCATGAAGAAAC 59.715 40.000 0.00 0.00 46.30 2.78
4695 6112 5.393124 GTGCGATGAACAATCATGAAGAAA 58.607 37.500 0.00 0.00 46.30 2.52
4696 6113 4.142622 GGTGCGATGAACAATCATGAAGAA 60.143 41.667 0.00 0.00 46.30 2.52
4697 6114 3.374988 GGTGCGATGAACAATCATGAAGA 59.625 43.478 0.00 0.00 46.30 2.87
4698 6115 3.127376 TGGTGCGATGAACAATCATGAAG 59.873 43.478 0.00 0.00 46.30 3.02
4699 6116 3.080319 TGGTGCGATGAACAATCATGAA 58.920 40.909 0.00 0.00 46.30 2.57
4700 6117 2.679336 CTGGTGCGATGAACAATCATGA 59.321 45.455 0.00 0.00 46.30 3.07
4701 6118 2.223409 CCTGGTGCGATGAACAATCATG 60.223 50.000 0.00 0.00 46.30 3.07
4703 6120 1.452110 CCTGGTGCGATGAACAATCA 58.548 50.000 0.00 0.00 40.57 2.57
4704 6121 0.734889 CCCTGGTGCGATGAACAATC 59.265 55.000 0.00 0.00 0.00 2.67
4705 6122 1.315257 GCCCTGGTGCGATGAACAAT 61.315 55.000 0.00 0.00 0.00 2.71
4720 6137 3.982241 GCGCTTGTTTGCTGCCCT 61.982 61.111 0.00 0.00 0.00 5.19
4736 6153 3.501445 GGAAAGTGATGCATATCTCTGGC 59.499 47.826 0.00 0.00 37.26 4.85
4745 6162 4.452825 CATCTCTCTGGAAAGTGATGCAT 58.547 43.478 0.00 0.00 39.21 3.96
4759 6176 0.740149 CGTCTCTGCAGCATCTCTCT 59.260 55.000 9.47 0.00 0.00 3.10
4761 6178 1.815196 CCGTCTCTGCAGCATCTCT 59.185 57.895 9.47 0.00 0.00 3.10
4786 6230 3.099905 AGCAATGTAGGAGTAGTCTGCA 58.900 45.455 9.19 0.00 34.40 4.41
4787 6231 3.810310 AGCAATGTAGGAGTAGTCTGC 57.190 47.619 0.00 0.00 0.00 4.26
4788 6232 5.971763 AGAAAGCAATGTAGGAGTAGTCTG 58.028 41.667 0.00 0.00 0.00 3.51
4789 6233 6.613153 AAGAAAGCAATGTAGGAGTAGTCT 57.387 37.500 0.00 0.00 0.00 3.24
4790 6234 7.674471 AAAAGAAAGCAATGTAGGAGTAGTC 57.326 36.000 0.00 0.00 0.00 2.59
4792 6236 8.329203 AGAAAAAGAAAGCAATGTAGGAGTAG 57.671 34.615 0.00 0.00 0.00 2.57
4793 6237 8.691661 AAGAAAAAGAAAGCAATGTAGGAGTA 57.308 30.769 0.00 0.00 0.00 2.59
4794 6238 7.503902 AGAAGAAAAAGAAAGCAATGTAGGAGT 59.496 33.333 0.00 0.00 0.00 3.85
4795 6239 7.880105 AGAAGAAAAAGAAAGCAATGTAGGAG 58.120 34.615 0.00 0.00 0.00 3.69
4796 6240 7.721399 AGAGAAGAAAAAGAAAGCAATGTAGGA 59.279 33.333 0.00 0.00 0.00 2.94
4797 6241 7.880105 AGAGAAGAAAAAGAAAGCAATGTAGG 58.120 34.615 0.00 0.00 0.00 3.18
4798 6242 8.020244 GGAGAGAAGAAAAAGAAAGCAATGTAG 58.980 37.037 0.00 0.00 0.00 2.74
4799 6243 7.040409 GGGAGAGAAGAAAAAGAAAGCAATGTA 60.040 37.037 0.00 0.00 0.00 2.29
4800 6244 6.239148 GGGAGAGAAGAAAAAGAAAGCAATGT 60.239 38.462 0.00 0.00 0.00 2.71
4801 6245 6.155136 GGGAGAGAAGAAAAAGAAAGCAATG 58.845 40.000 0.00 0.00 0.00 2.82
4802 6246 5.835280 TGGGAGAGAAGAAAAAGAAAGCAAT 59.165 36.000 0.00 0.00 0.00 3.56
4803 6247 5.200483 TGGGAGAGAAGAAAAAGAAAGCAA 58.800 37.500 0.00 0.00 0.00 3.91
4804 6248 4.792068 TGGGAGAGAAGAAAAAGAAAGCA 58.208 39.130 0.00 0.00 0.00 3.91
4805 6249 5.278709 CCTTGGGAGAGAAGAAAAAGAAAGC 60.279 44.000 0.00 0.00 0.00 3.51
4806 6250 5.830457 ACCTTGGGAGAGAAGAAAAAGAAAG 59.170 40.000 0.00 0.00 0.00 2.62
4807 6251 5.766590 ACCTTGGGAGAGAAGAAAAAGAAA 58.233 37.500 0.00 0.00 0.00 2.52
4808 6252 5.388599 ACCTTGGGAGAGAAGAAAAAGAA 57.611 39.130 0.00 0.00 0.00 2.52
4809 6253 5.607171 AGTACCTTGGGAGAGAAGAAAAAGA 59.393 40.000 0.00 0.00 0.00 2.52
4810 6254 5.703130 CAGTACCTTGGGAGAGAAGAAAAAG 59.297 44.000 0.00 0.00 0.00 2.27
4811 6255 5.132144 ACAGTACCTTGGGAGAGAAGAAAAA 59.868 40.000 0.00 0.00 0.00 1.94
4812 6256 4.658901 ACAGTACCTTGGGAGAGAAGAAAA 59.341 41.667 0.00 0.00 0.00 2.29
4813 6257 4.232091 ACAGTACCTTGGGAGAGAAGAAA 58.768 43.478 0.00 0.00 0.00 2.52
4814 6258 3.858135 ACAGTACCTTGGGAGAGAAGAA 58.142 45.455 0.00 0.00 0.00 2.52
4815 6259 3.544698 ACAGTACCTTGGGAGAGAAGA 57.455 47.619 0.00 0.00 0.00 2.87
4816 6260 5.941555 AATACAGTACCTTGGGAGAGAAG 57.058 43.478 0.00 0.00 0.00 2.85
4817 6261 6.738635 TCTAATACAGTACCTTGGGAGAGAA 58.261 40.000 0.00 0.00 0.00 2.87
4818 6262 6.337185 TCTAATACAGTACCTTGGGAGAGA 57.663 41.667 0.00 0.00 0.00 3.10
4819 6263 7.604657 AATCTAATACAGTACCTTGGGAGAG 57.395 40.000 0.00 0.00 0.00 3.20
4820 6264 7.232941 GCTAATCTAATACAGTACCTTGGGAGA 59.767 40.741 0.00 0.00 0.00 3.71
4821 6265 7.233757 AGCTAATCTAATACAGTACCTTGGGAG 59.766 40.741 0.00 0.00 0.00 4.30
4822 6266 7.073854 AGCTAATCTAATACAGTACCTTGGGA 58.926 38.462 0.00 0.00 0.00 4.37
4823 6267 7.304497 AGCTAATCTAATACAGTACCTTGGG 57.696 40.000 0.00 0.00 0.00 4.12
4824 6268 8.204836 ACAAGCTAATCTAATACAGTACCTTGG 58.795 37.037 0.00 0.00 31.67 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.