Multiple sequence alignment - TraesCS5D01G416000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G416000 chr5D 100.000 5355 0 0 1 5355 478470333 478464979 0.000000e+00 9889
1 TraesCS5D01G416000 chr5D 87.566 1906 193 26 1076 2952 335235321 335233431 0.000000e+00 2167
2 TraesCS5D01G416000 chr5D 86.175 962 103 12 3394 4352 335232614 335231680 0.000000e+00 1013
3 TraesCS5D01G416000 chr5B 94.715 4541 139 30 259 4736 586356325 586351823 0.000000e+00 6962
4 TraesCS5D01G416000 chr5B 84.592 2265 262 59 739 2952 392270043 392267815 0.000000e+00 2169
5 TraesCS5D01G416000 chr5B 86.175 962 103 12 3394 4352 392267023 392266089 0.000000e+00 1013
6 TraesCS5D01G416000 chr5B 96.491 228 8 0 4962 5189 586351653 586351426 1.410000e-100 377
7 TraesCS5D01G416000 chr5A 92.432 4572 188 62 259 4739 597664510 597660006 0.000000e+00 6381
8 TraesCS5D01G416000 chr5A 87.742 1909 196 23 1076 2958 436633214 436631318 0.000000e+00 2194
9 TraesCS5D01G416000 chr5A 86.279 962 102 12 3394 4352 436630556 436629622 0.000000e+00 1018
10 TraesCS5D01G416000 chr4A 81.180 356 58 8 1269 1621 316873370 316873021 1.470000e-70 278
11 TraesCS5D01G416000 chr7B 83.511 188 26 3 1440 1626 578499456 578499273 2.560000e-38 171
12 TraesCS5D01G416000 chr1B 85.417 96 12 2 15 109 493658599 493658693 1.230000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G416000 chr5D 478464979 478470333 5354 True 9889.0 9889 100.0000 1 5355 1 chr5D.!!$R1 5354
1 TraesCS5D01G416000 chr5D 335231680 335235321 3641 True 1590.0 2167 86.8705 1076 4352 2 chr5D.!!$R2 3276
2 TraesCS5D01G416000 chr5B 586351426 586356325 4899 True 3669.5 6962 95.6030 259 5189 2 chr5B.!!$R2 4930
3 TraesCS5D01G416000 chr5B 392266089 392270043 3954 True 1591.0 2169 85.3835 739 4352 2 chr5B.!!$R1 3613
4 TraesCS5D01G416000 chr5A 597660006 597664510 4504 True 6381.0 6381 92.4320 259 4739 1 chr5A.!!$R1 4480
5 TraesCS5D01G416000 chr5A 436629622 436633214 3592 True 1606.0 2194 87.0105 1076 4352 2 chr5A.!!$R2 3276

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
604 635 0.039074 CCGTGGGATATCGCAGACTC 60.039 60.0 21.68 9.87 42.51 3.36 F
1201 1271 0.318762 AGTCAGAACAAGGGAGCGAC 59.681 55.0 0.00 0.00 0.00 5.19 F
2178 2269 0.877743 GAAACTCAGAAGGGTGCTGC 59.122 55.0 0.00 0.00 33.45 5.25 F
2917 3008 0.821711 TTGCACAAGGGGTACAGCAC 60.822 55.0 0.00 0.00 0.00 4.40 F
3823 4384 0.737715 GCCTTGACCAGCTCACTACG 60.738 60.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1542 1618 0.096628 GTTGCTGCTGCTCATCTTCG 59.903 55.0 17.00 0.0 40.48 3.79 R
2455 2546 0.109272 TGCTAAGTTCGGTCTGCTCG 60.109 55.0 0.00 0.0 0.00 5.03 R
3823 4384 2.370281 TCTCGCTGAGGTCAAACATC 57.630 50.0 5.87 0.0 0.00 3.06 R
4292 4856 0.384309 GATGACATACCGGACTGCGA 59.616 55.0 9.46 0.0 0.00 5.10 R
4953 5554 0.036765 AATCGACCTAAAGCCACGCA 60.037 50.0 0.00 0.0 0.00 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.379485 CGCATTTTTGTTTGAATTTTGAAACT 57.621 26.923 6.86 0.00 35.67 2.66
26 27 8.848528 CGCATTTTTGTTTGAATTTTGAAACTT 58.151 25.926 6.86 0.00 35.67 2.66
37 38 9.980780 TTGAATTTTGAAACTTTTTCGAAATCC 57.019 25.926 19.95 12.65 40.03 3.01
38 39 8.608317 TGAATTTTGAAACTTTTTCGAAATCCC 58.392 29.630 19.95 16.29 40.03 3.85
39 40 8.499403 AATTTTGAAACTTTTTCGAAATCCCA 57.501 26.923 19.95 2.13 40.03 4.37
40 41 7.907214 TTTTGAAACTTTTTCGAAATCCCAA 57.093 28.000 12.12 7.75 29.47 4.12
41 42 7.907214 TTTGAAACTTTTTCGAAATCCCAAA 57.093 28.000 12.12 12.54 0.00 3.28
42 43 8.499403 TTTGAAACTTTTTCGAAATCCCAAAT 57.501 26.923 12.12 0.00 0.00 2.32
43 44 8.499403 TTGAAACTTTTTCGAAATCCCAAATT 57.501 26.923 12.12 0.00 0.00 1.82
44 45 9.601217 TTGAAACTTTTTCGAAATCCCAAATTA 57.399 25.926 12.12 0.00 0.00 1.40
45 46 9.771534 TGAAACTTTTTCGAAATCCCAAATTAT 57.228 25.926 12.12 0.00 0.00 1.28
70 71 8.828688 TTTAAAGAAGGAAAAACAAAAACGGA 57.171 26.923 0.00 0.00 0.00 4.69
71 72 8.828688 TTAAAGAAGGAAAAACAAAAACGGAA 57.171 26.923 0.00 0.00 0.00 4.30
72 73 6.961359 AAGAAGGAAAAACAAAAACGGAAG 57.039 33.333 0.00 0.00 0.00 3.46
73 74 5.416083 AGAAGGAAAAACAAAAACGGAAGG 58.584 37.500 0.00 0.00 0.00 3.46
74 75 5.186215 AGAAGGAAAAACAAAAACGGAAGGA 59.814 36.000 0.00 0.00 0.00 3.36
75 76 5.408880 AGGAAAAACAAAAACGGAAGGAA 57.591 34.783 0.00 0.00 0.00 3.36
76 77 5.795972 AGGAAAAACAAAAACGGAAGGAAA 58.204 33.333 0.00 0.00 0.00 3.13
77 78 6.231951 AGGAAAAACAAAAACGGAAGGAAAA 58.768 32.000 0.00 0.00 0.00 2.29
78 79 6.711194 AGGAAAAACAAAAACGGAAGGAAAAA 59.289 30.769 0.00 0.00 0.00 1.94
114 115 7.940178 AAAACGAAACAAGAAAATATGGGTC 57.060 32.000 0.00 0.00 0.00 4.46
115 116 5.638596 ACGAAACAAGAAAATATGGGTCC 57.361 39.130 0.00 0.00 0.00 4.46
116 117 5.074115 ACGAAACAAGAAAATATGGGTCCA 58.926 37.500 0.00 0.00 0.00 4.02
117 118 5.183140 ACGAAACAAGAAAATATGGGTCCAG 59.817 40.000 0.00 0.00 0.00 3.86
118 119 5.405935 AAACAAGAAAATATGGGTCCAGC 57.594 39.130 0.00 0.00 0.00 4.85
119 120 4.046286 ACAAGAAAATATGGGTCCAGCA 57.954 40.909 0.00 0.00 0.00 4.41
120 121 3.763897 ACAAGAAAATATGGGTCCAGCAC 59.236 43.478 0.00 0.00 0.00 4.40
121 122 2.643551 AGAAAATATGGGTCCAGCACG 58.356 47.619 0.00 0.00 0.00 5.34
122 123 2.238646 AGAAAATATGGGTCCAGCACGA 59.761 45.455 0.00 0.00 0.00 4.35
123 124 2.038387 AAATATGGGTCCAGCACGAC 57.962 50.000 0.00 0.00 0.00 4.34
129 130 4.504132 GTCCAGCACGACCATCTC 57.496 61.111 0.00 0.00 0.00 2.75
130 131 1.893786 GTCCAGCACGACCATCTCT 59.106 57.895 0.00 0.00 0.00 3.10
131 132 0.247736 GTCCAGCACGACCATCTCTT 59.752 55.000 0.00 0.00 0.00 2.85
132 133 0.532573 TCCAGCACGACCATCTCTTC 59.467 55.000 0.00 0.00 0.00 2.87
133 134 0.247460 CCAGCACGACCATCTCTTCA 59.753 55.000 0.00 0.00 0.00 3.02
134 135 1.638133 CAGCACGACCATCTCTTCAG 58.362 55.000 0.00 0.00 0.00 3.02
135 136 1.203287 CAGCACGACCATCTCTTCAGA 59.797 52.381 0.00 0.00 0.00 3.27
136 137 1.895798 AGCACGACCATCTCTTCAGAA 59.104 47.619 0.00 0.00 30.24 3.02
137 138 2.300152 AGCACGACCATCTCTTCAGAAA 59.700 45.455 0.00 0.00 30.24 2.52
138 139 3.067106 GCACGACCATCTCTTCAGAAAA 58.933 45.455 0.00 0.00 30.24 2.29
139 140 3.686726 GCACGACCATCTCTTCAGAAAAT 59.313 43.478 0.00 0.00 30.24 1.82
140 141 4.154918 GCACGACCATCTCTTCAGAAAATT 59.845 41.667 0.00 0.00 30.24 1.82
141 142 5.672321 GCACGACCATCTCTTCAGAAAATTC 60.672 44.000 0.00 0.00 30.24 2.17
142 143 4.627467 ACGACCATCTCTTCAGAAAATTCG 59.373 41.667 0.00 0.00 30.24 3.34
143 144 4.033358 CGACCATCTCTTCAGAAAATTCGG 59.967 45.833 0.00 0.00 30.24 4.30
144 145 5.165961 ACCATCTCTTCAGAAAATTCGGA 57.834 39.130 0.00 0.00 30.24 4.55
145 146 5.560724 ACCATCTCTTCAGAAAATTCGGAA 58.439 37.500 8.16 8.16 38.69 4.30
151 152 4.634012 TTCAGAAAATTCGGAAGGAGGA 57.366 40.909 4.89 0.00 36.66 3.71
152 153 3.939066 TCAGAAAATTCGGAAGGAGGAC 58.061 45.455 0.00 0.00 0.00 3.85
153 154 3.326588 TCAGAAAATTCGGAAGGAGGACA 59.673 43.478 0.00 0.00 0.00 4.02
154 155 3.437049 CAGAAAATTCGGAAGGAGGACAC 59.563 47.826 0.00 0.00 0.00 3.67
155 156 3.072476 AGAAAATTCGGAAGGAGGACACA 59.928 43.478 0.00 0.00 0.00 3.72
156 157 2.770164 AATTCGGAAGGAGGACACAG 57.230 50.000 0.00 0.00 0.00 3.66
157 158 0.905357 ATTCGGAAGGAGGACACAGG 59.095 55.000 0.00 0.00 0.00 4.00
158 159 1.827399 TTCGGAAGGAGGACACAGGC 61.827 60.000 0.00 0.00 0.00 4.85
159 160 2.671682 GGAAGGAGGACACAGGCC 59.328 66.667 0.00 0.00 0.00 5.19
160 161 2.671682 GAAGGAGGACACAGGCCC 59.328 66.667 0.00 0.00 0.00 5.80
161 162 2.121963 AAGGAGGACACAGGCCCA 60.122 61.111 0.00 0.00 0.00 5.36
162 163 2.190488 GAAGGAGGACACAGGCCCAG 62.190 65.000 0.00 0.00 0.00 4.45
163 164 4.416738 GGAGGACACAGGCCCAGC 62.417 72.222 0.00 0.00 0.00 4.85
176 177 3.736224 CCAGCCTCACCAGCCCAT 61.736 66.667 0.00 0.00 0.00 4.00
177 178 2.439701 CAGCCTCACCAGCCCATG 60.440 66.667 0.00 0.00 0.00 3.66
178 179 2.937689 AGCCTCACCAGCCCATGT 60.938 61.111 0.00 0.00 0.00 3.21
179 180 2.753043 GCCTCACCAGCCCATGTG 60.753 66.667 0.00 0.00 0.00 3.21
180 181 2.753043 CCTCACCAGCCCATGTGC 60.753 66.667 0.00 0.00 32.51 4.57
181 182 2.753043 CTCACCAGCCCATGTGCC 60.753 66.667 0.00 0.00 32.51 5.01
182 183 3.572447 CTCACCAGCCCATGTGCCA 62.572 63.158 0.00 0.00 32.51 4.92
183 184 2.363276 CACCAGCCCATGTGCCAT 60.363 61.111 0.00 0.00 0.00 4.40
184 185 2.363276 ACCAGCCCATGTGCCATG 60.363 61.111 0.00 7.88 0.00 3.66
185 186 2.363276 CCAGCCCATGTGCCATGT 60.363 61.111 12.36 0.00 0.00 3.21
186 187 1.985662 CCAGCCCATGTGCCATGTT 60.986 57.895 12.36 0.00 0.00 2.71
187 188 0.683828 CCAGCCCATGTGCCATGTTA 60.684 55.000 12.36 0.00 0.00 2.41
188 189 0.457035 CAGCCCATGTGCCATGTTAC 59.543 55.000 12.36 0.00 0.00 2.50
189 190 0.684153 AGCCCATGTGCCATGTTACC 60.684 55.000 12.36 1.30 0.00 2.85
190 191 1.675720 GCCCATGTGCCATGTTACCC 61.676 60.000 12.36 0.00 0.00 3.69
191 192 1.042559 CCCATGTGCCATGTTACCCC 61.043 60.000 12.36 0.00 0.00 4.95
192 193 0.324183 CCATGTGCCATGTTACCCCA 60.324 55.000 12.36 0.00 0.00 4.96
193 194 1.554836 CATGTGCCATGTTACCCCAA 58.445 50.000 6.93 0.00 0.00 4.12
194 195 1.898472 CATGTGCCATGTTACCCCAAA 59.102 47.619 6.93 0.00 0.00 3.28
195 196 1.333177 TGTGCCATGTTACCCCAAAC 58.667 50.000 0.00 0.00 0.00 2.93
196 197 0.242555 GTGCCATGTTACCCCAAACG 59.757 55.000 0.00 0.00 31.76 3.60
197 198 1.214325 GCCATGTTACCCCAAACGC 59.786 57.895 0.00 0.00 31.76 4.84
198 199 1.887301 CCATGTTACCCCAAACGCC 59.113 57.895 0.00 0.00 31.76 5.68
199 200 1.600511 CCATGTTACCCCAAACGCCC 61.601 60.000 0.00 0.00 31.76 6.13
200 201 1.676303 ATGTTACCCCAAACGCCCG 60.676 57.895 0.00 0.00 31.76 6.13
201 202 2.032376 GTTACCCCAAACGCCCGA 59.968 61.111 0.00 0.00 0.00 5.14
202 203 2.032376 TTACCCCAAACGCCCGAC 59.968 61.111 0.00 0.00 0.00 4.79
203 204 3.549900 TTACCCCAAACGCCCGACC 62.550 63.158 0.00 0.00 0.00 4.79
217 218 4.785453 GACCCAGCCCGCCAAGAG 62.785 72.222 0.00 0.00 0.00 2.85
219 220 4.785453 CCCAGCCCGCCAAGAGTC 62.785 72.222 0.00 0.00 0.00 3.36
220 221 4.785453 CCAGCCCGCCAAGAGTCC 62.785 72.222 0.00 0.00 0.00 3.85
221 222 4.020617 CAGCCCGCCAAGAGTCCA 62.021 66.667 0.00 0.00 0.00 4.02
222 223 3.710722 AGCCCGCCAAGAGTCCAG 61.711 66.667 0.00 0.00 0.00 3.86
227 228 4.742201 GCCAAGAGTCCAGCGCGA 62.742 66.667 12.10 0.00 0.00 5.87
228 229 2.811317 CCAAGAGTCCAGCGCGAC 60.811 66.667 12.10 4.24 0.00 5.19
229 230 2.811317 CAAGAGTCCAGCGCGACC 60.811 66.667 12.10 0.00 32.91 4.79
230 231 3.303135 AAGAGTCCAGCGCGACCA 61.303 61.111 12.10 0.00 32.91 4.02
231 232 2.650116 AAGAGTCCAGCGCGACCAT 61.650 57.895 12.10 0.00 32.91 3.55
232 233 2.564553 AAGAGTCCAGCGCGACCATC 62.565 60.000 12.10 4.58 32.91 3.51
233 234 3.069980 GAGTCCAGCGCGACCATCT 62.070 63.158 12.10 1.06 32.91 2.90
234 235 2.583593 GTCCAGCGCGACCATCTC 60.584 66.667 12.10 0.00 0.00 2.75
235 236 2.755876 TCCAGCGCGACCATCTCT 60.756 61.111 12.10 0.00 0.00 3.10
236 237 2.185350 CCAGCGCGACCATCTCTT 59.815 61.111 12.10 0.00 0.00 2.85
237 238 2.169789 CCAGCGCGACCATCTCTTG 61.170 63.158 12.10 0.00 0.00 3.02
238 239 1.153765 CAGCGCGACCATCTCTTGA 60.154 57.895 12.10 0.00 0.00 3.02
239 240 1.140589 AGCGCGACCATCTCTTGAG 59.859 57.895 12.10 0.00 0.00 3.02
240 241 1.139734 GCGCGACCATCTCTTGAGA 59.860 57.895 12.10 2.59 0.00 3.27
241 242 0.458543 GCGCGACCATCTCTTGAGAA 60.459 55.000 12.10 0.00 0.00 2.87
242 243 1.996292 CGCGACCATCTCTTGAGAAA 58.004 50.000 0.00 0.00 0.00 2.52
243 244 2.337583 CGCGACCATCTCTTGAGAAAA 58.662 47.619 0.00 0.00 0.00 2.29
244 245 2.932614 CGCGACCATCTCTTGAGAAAAT 59.067 45.455 0.00 0.00 0.00 1.82
245 246 4.112634 CGCGACCATCTCTTGAGAAAATA 58.887 43.478 0.00 0.00 0.00 1.40
246 247 4.747108 CGCGACCATCTCTTGAGAAAATAT 59.253 41.667 0.00 0.00 0.00 1.28
247 248 5.332883 CGCGACCATCTCTTGAGAAAATATG 60.333 44.000 0.00 0.00 0.00 1.78
248 249 5.559799 GCGACCATCTCTTGAGAAAATATGC 60.560 44.000 4.33 2.28 0.00 3.14
249 250 5.525012 CGACCATCTCTTGAGAAAATATGCA 59.475 40.000 4.33 0.00 0.00 3.96
250 251 6.037500 CGACCATCTCTTGAGAAAATATGCAA 59.962 38.462 4.33 0.00 0.00 4.08
251 252 7.414429 CGACCATCTCTTGAGAAAATATGCAAA 60.414 37.037 4.33 0.00 0.00 3.68
252 253 8.125978 ACCATCTCTTGAGAAAATATGCAAAA 57.874 30.769 4.33 0.00 0.00 2.44
253 254 8.587608 ACCATCTCTTGAGAAAATATGCAAAAA 58.412 29.630 4.33 0.00 0.00 1.94
452 482 2.124277 AGGCAAGGTAAAATCGACCC 57.876 50.000 0.00 0.00 37.73 4.46
554 584 3.390521 CGTGTCCCAGCCCTAGCA 61.391 66.667 0.00 0.00 43.56 3.49
563 593 4.874977 GCCCTAGCAGCCGACGAC 62.875 72.222 0.00 0.00 39.53 4.34
604 635 0.039074 CCGTGGGATATCGCAGACTC 60.039 60.000 21.68 9.87 42.51 3.36
605 636 0.955178 CGTGGGATATCGCAGACTCT 59.045 55.000 21.68 0.00 42.51 3.24
981 1026 5.370875 AGCTTTGAATCTAGCTGAAGGAT 57.629 39.130 9.08 0.00 45.55 3.24
990 1035 7.882791 TGAATCTAGCTGAAGGATAACAAACAA 59.117 33.333 0.00 0.00 0.00 2.83
1054 1117 3.882888 TCGCTGACTCCAATTCTTTGTTT 59.117 39.130 0.00 0.00 0.00 2.83
1062 1125 7.723616 TGACTCCAATTCTTTGTTTCATCCTTA 59.276 33.333 0.00 0.00 0.00 2.69
1201 1271 0.318762 AGTCAGAACAAGGGAGCGAC 59.681 55.000 0.00 0.00 0.00 5.19
1489 1565 6.406370 TCCAAATAGGTACATCACAACTCTG 58.594 40.000 0.00 0.00 39.02 3.35
1542 1618 1.408702 TGCAAACAAGGAAGCCAAGAC 59.591 47.619 0.00 0.00 0.00 3.01
1562 1638 1.451067 GAAGATGAGCAGCAGCAACT 58.549 50.000 3.17 0.00 45.49 3.16
1572 1648 2.195567 GCAGCAACTCCAAGGCACA 61.196 57.895 0.00 0.00 0.00 4.57
1664 1740 9.260002 GAGATAATCCAGAGAGTTTTGAAGATC 57.740 37.037 0.00 0.00 0.00 2.75
1774 1853 6.036470 CAGTAGCGATGACAATAAGAGTGAA 58.964 40.000 0.00 0.00 0.00 3.18
1814 1905 6.640092 GGAAAAGAAGTTGAGCAAGAAAGATG 59.360 38.462 0.00 0.00 0.00 2.90
1855 1946 3.261897 TCTTGAAAGACCCCAGTGAGATC 59.738 47.826 0.00 0.00 0.00 2.75
1994 2085 3.091545 CCTGCCCAGAAGCTTGAAATTA 58.908 45.455 2.10 0.00 0.00 1.40
2071 2162 2.139917 CCGATCAACGTGTGGAAGAAA 58.860 47.619 0.00 0.00 40.78 2.52
2178 2269 0.877743 GAAACTCAGAAGGGTGCTGC 59.122 55.000 0.00 0.00 33.45 5.25
2190 2281 1.202976 GGGTGCTGCCTATGATGGAAT 60.203 52.381 0.00 0.00 37.43 3.01
2212 2303 3.587061 TGATCCATGTTACAGGTGACCTT 59.413 43.478 0.00 0.00 0.00 3.50
2455 2546 1.135721 GATGCAATGAGGAAACTGGCC 59.864 52.381 0.00 0.00 44.43 5.36
2636 2727 6.760298 TGATCTGATGTCTCTGATTTACAAGC 59.240 38.462 0.00 0.00 39.40 4.01
2839 2930 3.565902 GTGCTTTCAGGGCTGGTTATATC 59.434 47.826 0.00 0.00 0.00 1.63
2917 3008 0.821711 TTGCACAAGGGGTACAGCAC 60.822 55.000 0.00 0.00 0.00 4.40
3050 3141 7.499232 ACCTAGTCCTGCATAAAACATTCATAC 59.501 37.037 0.00 0.00 0.00 2.39
3679 4240 3.326006 AGAAGGCTTTCAGTGTCATCAGA 59.674 43.478 11.53 0.00 35.70 3.27
3760 4321 3.910568 AAGATCAAGGAAGAGGCTCTG 57.089 47.619 19.53 6.04 0.00 3.35
3823 4384 0.737715 GCCTTGACCAGCTCACTACG 60.738 60.000 0.00 0.00 0.00 3.51
3962 4523 2.171448 CAAACTAGGCTGCAGGGACTAT 59.829 50.000 17.12 0.00 36.02 2.12
4024 4585 1.810606 ATGAGAGGGCGTATGAGGCG 61.811 60.000 0.00 0.00 37.59 5.52
4057 4618 4.641645 CTTGAGGGTGCACCGCCA 62.642 66.667 29.08 24.39 46.96 5.69
4209 4773 1.530323 GGTGGCTACCAAAACGACAT 58.470 50.000 15.42 0.00 46.71 3.06
4216 4780 3.003897 GCTACCAAAACGACATGTTCCAA 59.996 43.478 0.00 0.00 40.84 3.53
4218 4782 4.040445 ACCAAAACGACATGTTCCAAAG 57.960 40.909 0.00 0.00 40.84 2.77
4292 4856 1.147824 CATGATGGAAGGGCTCGCT 59.852 57.895 0.00 0.00 0.00 4.93
4410 4989 5.474876 ACCTTGAAGCACTCCATTAGAAAAG 59.525 40.000 0.00 0.00 0.00 2.27
4497 5077 6.817765 AATTTAGAAATCTTCAGCCGTTCA 57.182 33.333 0.00 0.00 0.00 3.18
4503 5083 0.034896 TCTTCAGCCGTTCAGAACCC 59.965 55.000 7.76 0.00 0.00 4.11
4511 5091 0.032952 CGTTCAGAACCCGTCAGGAA 59.967 55.000 7.76 0.00 41.02 3.36
4520 5100 1.489230 ACCCGTCAGGAAACTCAAACT 59.511 47.619 0.00 0.00 40.21 2.66
4594 5176 5.034852 TGAATCTGTCAGGAACTCAAACA 57.965 39.130 0.00 0.00 34.60 2.83
4626 5208 3.284617 GTTTGTGTTGTGGGAGTAAGGT 58.715 45.455 0.00 0.00 0.00 3.50
4710 5293 8.687242 TGTTTGAAATTTGTGTTATCTGGTGTA 58.313 29.630 0.00 0.00 0.00 2.90
4736 5320 7.171337 AGCTGATTTTATTGCGATTTTTGTTGT 59.829 29.630 0.00 0.00 0.00 3.32
4743 5342 3.573598 TGCGATTTTTGTTGTATGGCTG 58.426 40.909 0.00 0.00 0.00 4.85
4750 5349 2.489938 TGTTGTATGGCTGGAAGTCC 57.510 50.000 0.00 0.00 38.23 3.85
4753 5352 3.197766 TGTTGTATGGCTGGAAGTCCTAG 59.802 47.826 0.00 0.00 38.23 3.02
4766 5365 5.011125 TGGAAGTCCTAGTTGAGAACTCTTG 59.989 44.000 0.00 0.00 41.77 3.02
4767 5366 5.011227 GGAAGTCCTAGTTGAGAACTCTTGT 59.989 44.000 3.51 0.00 41.77 3.16
4768 5367 6.463190 GGAAGTCCTAGTTGAGAACTCTTGTT 60.463 42.308 3.51 0.00 41.77 2.83
4772 5371 6.017852 GTCCTAGTTGAGAACTCTTGTTTTGG 60.018 42.308 3.51 0.00 41.77 3.28
4773 5372 5.823045 CCTAGTTGAGAACTCTTGTTTTGGT 59.177 40.000 3.51 0.00 41.77 3.67
4774 5373 6.318900 CCTAGTTGAGAACTCTTGTTTTGGTT 59.681 38.462 3.51 0.00 41.77 3.67
4775 5374 5.954335 AGTTGAGAACTCTTGTTTTGGTTG 58.046 37.500 3.51 0.00 37.02 3.77
4787 5386 7.616313 TCTTGTTTTGGTTGTACTTCCAATTT 58.384 30.769 17.98 0.00 42.25 1.82
4788 5387 7.762159 TCTTGTTTTGGTTGTACTTCCAATTTC 59.238 33.333 17.98 13.17 42.25 2.17
4793 5392 7.461182 TTGGTTGTACTTCCAATTTCCATAG 57.539 36.000 14.91 0.00 38.57 2.23
4794 5393 6.785076 TGGTTGTACTTCCAATTTCCATAGA 58.215 36.000 7.04 0.00 0.00 1.98
4796 5395 7.393234 TGGTTGTACTTCCAATTTCCATAGAAG 59.607 37.037 7.04 0.00 39.82 2.85
4797 5396 7.393515 GGTTGTACTTCCAATTTCCATAGAAGT 59.606 37.037 8.57 8.57 46.53 3.01
4798 5397 7.921786 TGTACTTCCAATTTCCATAGAAGTG 57.078 36.000 12.63 0.00 45.00 3.16
4799 5398 7.458397 TGTACTTCCAATTTCCATAGAAGTGT 58.542 34.615 12.63 0.00 45.00 3.55
4800 5399 6.824305 ACTTCCAATTTCCATAGAAGTGTG 57.176 37.500 3.09 0.00 44.04 3.82
4801 5400 6.542821 ACTTCCAATTTCCATAGAAGTGTGA 58.457 36.000 3.09 0.00 44.04 3.58
4814 5415 1.953559 AGTGTGACACGCTGAAATGT 58.046 45.000 20.56 0.00 37.59 2.71
4816 5417 2.800544 AGTGTGACACGCTGAAATGTAC 59.199 45.455 20.56 0.00 37.59 2.90
4817 5418 1.790043 TGTGACACGCTGAAATGTACG 59.210 47.619 0.22 0.00 0.00 3.67
4819 5420 1.269883 TGACACGCTGAAATGTACGGT 60.270 47.619 0.00 0.00 0.00 4.83
4823 5424 3.808726 ACACGCTGAAATGTACGGTAAAA 59.191 39.130 0.00 0.00 0.00 1.52
4824 5425 4.272991 ACACGCTGAAATGTACGGTAAAAA 59.727 37.500 0.00 0.00 0.00 1.94
4826 5427 5.854338 CACGCTGAAATGTACGGTAAAAATT 59.146 36.000 0.00 0.00 0.00 1.82
4828 5429 6.081049 CGCTGAAATGTACGGTAAAAATTCA 58.919 36.000 8.67 8.67 0.00 2.57
4829 5430 6.745450 CGCTGAAATGTACGGTAAAAATTCAT 59.255 34.615 9.18 0.00 0.00 2.57
4830 5431 7.253288 CGCTGAAATGTACGGTAAAAATTCATG 60.253 37.037 9.18 0.00 0.00 3.07
4831 5432 7.753132 GCTGAAATGTACGGTAAAAATTCATGA 59.247 33.333 9.18 0.00 0.00 3.07
4832 5433 8.958175 TGAAATGTACGGTAAAAATTCATGAC 57.042 30.769 0.00 0.00 0.00 3.06
4833 5434 8.024285 TGAAATGTACGGTAAAAATTCATGACC 58.976 33.333 0.00 0.00 0.00 4.02
4836 5437 3.757745 CGGTAAAAATTCATGACCGCT 57.242 42.857 6.91 0.00 45.67 5.52
4837 5438 3.680789 CGGTAAAAATTCATGACCGCTC 58.319 45.455 6.91 0.00 45.67 5.03
4838 5439 3.126171 CGGTAAAAATTCATGACCGCTCA 59.874 43.478 6.91 0.00 45.67 4.26
4839 5440 4.412207 GGTAAAAATTCATGACCGCTCAC 58.588 43.478 0.00 0.00 0.00 3.51
4840 5441 4.083003 GGTAAAAATTCATGACCGCTCACA 60.083 41.667 0.00 0.00 0.00 3.58
4841 5442 3.837213 AAAATTCATGACCGCTCACAG 57.163 42.857 0.00 0.00 0.00 3.66
4842 5443 1.089920 AATTCATGACCGCTCACAGC 58.910 50.000 0.00 0.00 38.02 4.40
4843 5444 0.745845 ATTCATGACCGCTCACAGCC 60.746 55.000 0.00 0.00 38.18 4.85
4844 5445 2.803155 TTCATGACCGCTCACAGCCC 62.803 60.000 0.00 0.00 38.18 5.19
4845 5446 4.101448 ATGACCGCTCACAGCCCC 62.101 66.667 0.00 0.00 38.18 5.80
4847 5448 4.329545 GACCGCTCACAGCCCCAA 62.330 66.667 0.00 0.00 38.18 4.12
4848 5449 4.335647 ACCGCTCACAGCCCCAAG 62.336 66.667 0.00 0.00 38.18 3.61
4852 5453 3.970410 CTCACAGCCCCAAGCCCA 61.970 66.667 0.00 0.00 45.47 5.36
4853 5454 3.933048 CTCACAGCCCCAAGCCCAG 62.933 68.421 0.00 0.00 45.47 4.45
4854 5455 3.970410 CACAGCCCCAAGCCCAGA 61.970 66.667 0.00 0.00 45.47 3.86
4855 5456 3.185203 ACAGCCCCAAGCCCAGAA 61.185 61.111 0.00 0.00 45.47 3.02
4856 5457 2.362120 CAGCCCCAAGCCCAGAAG 60.362 66.667 0.00 0.00 45.47 2.85
4857 5458 4.372999 AGCCCCAAGCCCAGAAGC 62.373 66.667 0.00 0.00 45.47 3.86
4859 5460 4.766632 CCCCAAGCCCAGAAGCCC 62.767 72.222 0.00 0.00 0.00 5.19
4860 5461 3.665971 CCCAAGCCCAGAAGCCCT 61.666 66.667 0.00 0.00 0.00 5.19
4861 5462 2.044551 CCAAGCCCAGAAGCCCTC 60.045 66.667 0.00 0.00 0.00 4.30
4862 5463 2.044551 CAAGCCCAGAAGCCCTCC 60.045 66.667 0.00 0.00 0.00 4.30
4863 5464 2.532715 AAGCCCAGAAGCCCTCCA 60.533 61.111 0.00 0.00 0.00 3.86
4864 5465 1.932757 AAGCCCAGAAGCCCTCCAT 60.933 57.895 0.00 0.00 0.00 3.41
4865 5466 0.624500 AAGCCCAGAAGCCCTCCATA 60.625 55.000 0.00 0.00 0.00 2.74
4866 5467 0.624500 AGCCCAGAAGCCCTCCATAA 60.625 55.000 0.00 0.00 0.00 1.90
4867 5468 0.466372 GCCCAGAAGCCCTCCATAAC 60.466 60.000 0.00 0.00 0.00 1.89
4868 5469 1.216990 CCCAGAAGCCCTCCATAACT 58.783 55.000 0.00 0.00 0.00 2.24
4869 5470 2.408565 CCCAGAAGCCCTCCATAACTA 58.591 52.381 0.00 0.00 0.00 2.24
4870 5471 2.104963 CCCAGAAGCCCTCCATAACTAC 59.895 54.545 0.00 0.00 0.00 2.73
4871 5472 3.041946 CCAGAAGCCCTCCATAACTACT 58.958 50.000 0.00 0.00 0.00 2.57
4872 5473 3.070302 CCAGAAGCCCTCCATAACTACTC 59.930 52.174 0.00 0.00 0.00 2.59
4873 5474 3.964031 CAGAAGCCCTCCATAACTACTCT 59.036 47.826 0.00 0.00 0.00 3.24
4874 5475 4.038642 CAGAAGCCCTCCATAACTACTCTC 59.961 50.000 0.00 0.00 0.00 3.20
4875 5476 2.588620 AGCCCTCCATAACTACTCTCG 58.411 52.381 0.00 0.00 0.00 4.04
4876 5477 1.614413 GCCCTCCATAACTACTCTCGG 59.386 57.143 0.00 0.00 0.00 4.63
4877 5478 1.614413 CCCTCCATAACTACTCTCGGC 59.386 57.143 0.00 0.00 0.00 5.54
4878 5479 1.614413 CCTCCATAACTACTCTCGGCC 59.386 57.143 0.00 0.00 0.00 6.13
4879 5480 2.588620 CTCCATAACTACTCTCGGCCT 58.411 52.381 0.00 0.00 0.00 5.19
4880 5481 2.959707 CTCCATAACTACTCTCGGCCTT 59.040 50.000 0.00 0.00 0.00 4.35
4881 5482 2.693591 TCCATAACTACTCTCGGCCTTG 59.306 50.000 0.00 0.00 0.00 3.61
4907 5508 1.215647 CACCGCCAGTGTCCTAGAC 59.784 63.158 0.00 0.00 41.93 2.59
4909 5510 0.966370 ACCGCCAGTGTCCTAGACTC 60.966 60.000 0.00 0.00 33.15 3.36
4914 5515 2.425102 GCCAGTGTCCTAGACTCCCTAT 60.425 54.545 0.00 0.00 33.15 2.57
4916 5517 3.892588 CCAGTGTCCTAGACTCCCTATTC 59.107 52.174 0.00 0.00 33.15 1.75
4927 5528 3.297736 ACTCCCTATTCTTGGTACCGAG 58.702 50.000 21.82 21.82 0.00 4.63
4931 5532 2.431057 CCTATTCTTGGTACCGAGCTGT 59.569 50.000 22.85 13.46 0.00 4.40
4932 5533 2.386661 ATTCTTGGTACCGAGCTGTG 57.613 50.000 22.85 1.66 0.00 3.66
4939 5540 0.389948 GTACCGAGCTGTGACCTTGG 60.390 60.000 0.00 0.00 39.38 3.61
4940 5541 0.541063 TACCGAGCTGTGACCTTGGA 60.541 55.000 0.00 0.00 37.32 3.53
4941 5542 1.194781 ACCGAGCTGTGACCTTGGAT 61.195 55.000 0.00 0.00 37.32 3.41
4942 5543 0.460987 CCGAGCTGTGACCTTGGATC 60.461 60.000 0.00 0.00 36.16 3.36
4943 5544 0.534412 CGAGCTGTGACCTTGGATCT 59.466 55.000 0.00 0.00 0.00 2.75
4944 5545 1.066573 CGAGCTGTGACCTTGGATCTT 60.067 52.381 0.00 0.00 0.00 2.40
4945 5546 2.613977 CGAGCTGTGACCTTGGATCTTT 60.614 50.000 0.00 0.00 0.00 2.52
4946 5547 3.416156 GAGCTGTGACCTTGGATCTTTT 58.584 45.455 0.00 0.00 0.00 2.27
4947 5548 4.579869 GAGCTGTGACCTTGGATCTTTTA 58.420 43.478 0.00 0.00 0.00 1.52
4948 5549 5.184892 AGCTGTGACCTTGGATCTTTTAT 57.815 39.130 0.00 0.00 0.00 1.40
4949 5550 5.189180 AGCTGTGACCTTGGATCTTTTATC 58.811 41.667 0.00 0.00 0.00 1.75
4950 5551 4.034510 GCTGTGACCTTGGATCTTTTATCG 59.965 45.833 0.00 0.00 0.00 2.92
4951 5552 5.160607 TGTGACCTTGGATCTTTTATCGT 57.839 39.130 0.00 0.00 0.00 3.73
4952 5553 4.935205 TGTGACCTTGGATCTTTTATCGTG 59.065 41.667 0.00 0.00 0.00 4.35
4953 5554 4.935808 GTGACCTTGGATCTTTTATCGTGT 59.064 41.667 0.00 0.00 0.00 4.49
4954 5555 4.935205 TGACCTTGGATCTTTTATCGTGTG 59.065 41.667 0.00 0.00 0.00 3.82
4955 5556 3.689649 ACCTTGGATCTTTTATCGTGTGC 59.310 43.478 0.00 0.00 0.00 4.57
4956 5557 3.242413 CCTTGGATCTTTTATCGTGTGCG 60.242 47.826 0.00 0.00 39.92 5.34
4957 5558 2.967362 TGGATCTTTTATCGTGTGCGT 58.033 42.857 0.00 0.00 39.49 5.24
4958 5559 2.670905 TGGATCTTTTATCGTGTGCGTG 59.329 45.455 0.00 0.00 39.49 5.34
4959 5560 2.030457 GGATCTTTTATCGTGTGCGTGG 59.970 50.000 0.00 0.00 39.49 4.94
4960 5561 0.793861 TCTTTTATCGTGTGCGTGGC 59.206 50.000 0.00 0.00 39.49 5.01
4974 5575 1.062148 GCGTGGCTTTAGGTCGATTTC 59.938 52.381 0.00 0.00 0.00 2.17
4985 5586 4.559862 AGGTCGATTTCTGATTTCCAGT 57.440 40.909 0.00 0.00 43.38 4.00
4987 5588 3.181506 GGTCGATTTCTGATTTCCAGTGC 60.182 47.826 0.00 0.00 43.38 4.40
4990 5591 3.441572 CGATTTCTGATTTCCAGTGCCTT 59.558 43.478 0.00 0.00 43.38 4.35
5016 5617 1.413767 CCAACACGCTGCGCTAGTAG 61.414 60.000 23.51 9.67 0.00 2.57
5128 5729 1.269102 CCTGAGCCGTTCCTATACACG 60.269 57.143 0.00 0.00 36.12 4.49
5131 5732 3.216800 TGAGCCGTTCCTATACACGTAT 58.783 45.455 0.00 0.00 34.47 3.06
5189 5790 3.929660 GGAAGCAGGTTCCGTACTT 57.070 52.632 15.65 0.00 45.69 2.24
5190 5791 2.180432 GGAAGCAGGTTCCGTACTTT 57.820 50.000 15.65 0.00 45.69 2.66
5191 5792 2.501261 GGAAGCAGGTTCCGTACTTTT 58.499 47.619 15.65 0.00 45.69 2.27
5192 5793 2.483106 GGAAGCAGGTTCCGTACTTTTC 59.517 50.000 15.65 0.00 45.69 2.29
5193 5794 3.400255 GAAGCAGGTTCCGTACTTTTCT 58.600 45.455 0.37 0.00 0.00 2.52
5194 5795 3.487120 AGCAGGTTCCGTACTTTTCTT 57.513 42.857 0.00 0.00 0.00 2.52
5195 5796 3.816994 AGCAGGTTCCGTACTTTTCTTT 58.183 40.909 0.00 0.00 0.00 2.52
5196 5797 3.813724 AGCAGGTTCCGTACTTTTCTTTC 59.186 43.478 0.00 0.00 0.00 2.62
5197 5798 3.363673 GCAGGTTCCGTACTTTTCTTTCG 60.364 47.826 0.00 0.00 0.00 3.46
5198 5799 3.805971 CAGGTTCCGTACTTTTCTTTCGT 59.194 43.478 0.00 0.00 0.00 3.85
5199 5800 4.053983 AGGTTCCGTACTTTTCTTTCGTC 58.946 43.478 0.00 0.00 0.00 4.20
5200 5801 4.053983 GGTTCCGTACTTTTCTTTCGTCT 58.946 43.478 0.00 0.00 0.00 4.18
5201 5802 4.509230 GGTTCCGTACTTTTCTTTCGTCTT 59.491 41.667 0.00 0.00 0.00 3.01
5202 5803 5.007039 GGTTCCGTACTTTTCTTTCGTCTTT 59.993 40.000 0.00 0.00 0.00 2.52
5203 5804 5.646467 TCCGTACTTTTCTTTCGTCTTTG 57.354 39.130 0.00 0.00 0.00 2.77
5204 5805 5.111293 TCCGTACTTTTCTTTCGTCTTTGT 58.889 37.500 0.00 0.00 0.00 2.83
5205 5806 6.272318 TCCGTACTTTTCTTTCGTCTTTGTA 58.728 36.000 0.00 0.00 0.00 2.41
5206 5807 6.198966 TCCGTACTTTTCTTTCGTCTTTGTAC 59.801 38.462 0.00 0.00 0.00 2.90
5207 5808 6.019640 CCGTACTTTTCTTTCGTCTTTGTACA 60.020 38.462 0.00 0.00 0.00 2.90
5208 5809 6.837817 CGTACTTTTCTTTCGTCTTTGTACAC 59.162 38.462 0.00 0.00 0.00 2.90
5209 5810 6.115450 ACTTTTCTTTCGTCTTTGTACACC 57.885 37.500 0.00 0.00 0.00 4.16
5210 5811 5.878669 ACTTTTCTTTCGTCTTTGTACACCT 59.121 36.000 0.00 0.00 0.00 4.00
5211 5812 7.043565 ACTTTTCTTTCGTCTTTGTACACCTA 58.956 34.615 0.00 0.00 0.00 3.08
5212 5813 7.713942 ACTTTTCTTTCGTCTTTGTACACCTAT 59.286 33.333 0.00 0.00 0.00 2.57
5213 5814 7.647907 TTTCTTTCGTCTTTGTACACCTATC 57.352 36.000 0.00 0.00 0.00 2.08
5214 5815 5.717119 TCTTTCGTCTTTGTACACCTATCC 58.283 41.667 0.00 0.00 0.00 2.59
5215 5816 5.244402 TCTTTCGTCTTTGTACACCTATCCA 59.756 40.000 0.00 0.00 0.00 3.41
5216 5817 5.471556 TTCGTCTTTGTACACCTATCCAA 57.528 39.130 0.00 0.00 0.00 3.53
5217 5818 5.471556 TCGTCTTTGTACACCTATCCAAA 57.528 39.130 0.00 0.00 0.00 3.28
5218 5819 5.856156 TCGTCTTTGTACACCTATCCAAAA 58.144 37.500 0.00 0.00 0.00 2.44
5219 5820 6.289834 TCGTCTTTGTACACCTATCCAAAAA 58.710 36.000 0.00 0.00 0.00 1.94
5256 5857 9.980780 AAATTATTGGAAAACGTGAACTTTTTG 57.019 25.926 2.76 0.00 29.19 2.44
5257 5858 8.934507 ATTATTGGAAAACGTGAACTTTTTGA 57.065 26.923 2.76 0.00 29.19 2.69
5258 5859 6.885735 ATTGGAAAACGTGAACTTTTTGAG 57.114 33.333 2.76 0.00 29.19 3.02
5259 5860 5.630661 TGGAAAACGTGAACTTTTTGAGA 57.369 34.783 2.76 0.00 29.19 3.27
5260 5861 6.015027 TGGAAAACGTGAACTTTTTGAGAA 57.985 33.333 2.76 0.00 29.19 2.87
5261 5862 6.626302 TGGAAAACGTGAACTTTTTGAGAAT 58.374 32.000 2.76 0.00 29.19 2.40
5262 5863 6.750039 TGGAAAACGTGAACTTTTTGAGAATC 59.250 34.615 2.76 0.00 29.19 2.52
5295 5896 5.688348 TTTTGAAACCGTGAACATTTTCG 57.312 34.783 0.00 0.00 34.04 3.46
5296 5897 4.617808 TTGAAACCGTGAACATTTTCGA 57.382 36.364 0.00 0.00 34.04 3.71
5297 5898 4.617808 TGAAACCGTGAACATTTTCGAA 57.382 36.364 0.00 0.00 34.04 3.71
5298 5899 4.982999 TGAAACCGTGAACATTTTCGAAA 58.017 34.783 6.47 6.47 34.04 3.46
5299 5900 5.583495 TGAAACCGTGAACATTTTCGAAAT 58.417 33.333 12.12 0.00 34.04 2.17
5300 5901 6.037098 TGAAACCGTGAACATTTTCGAAATT 58.963 32.000 12.12 5.37 34.04 1.82
5301 5902 7.194278 TGAAACCGTGAACATTTTCGAAATTA 58.806 30.769 12.12 0.00 34.04 1.40
5302 5903 6.979701 AACCGTGAACATTTTCGAAATTAC 57.020 33.333 12.12 2.90 34.04 1.89
5303 5904 6.308371 ACCGTGAACATTTTCGAAATTACT 57.692 33.333 12.12 0.00 34.04 2.24
5304 5905 7.424227 ACCGTGAACATTTTCGAAATTACTA 57.576 32.000 12.12 0.00 34.04 1.82
5305 5906 8.036273 ACCGTGAACATTTTCGAAATTACTAT 57.964 30.769 12.12 0.00 34.04 2.12
5306 5907 9.153721 ACCGTGAACATTTTCGAAATTACTATA 57.846 29.630 12.12 0.00 34.04 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.379485 AGTTTCAAAATTCAAACAAAAATGCG 57.621 26.923 9.20 0.00 35.33 4.73
11 12 9.980780 GGATTTCGAAAAAGTTTCAAAATTCAA 57.019 25.926 15.66 0.00 0.00 2.69
12 13 8.608317 GGGATTTCGAAAAAGTTTCAAAATTCA 58.392 29.630 15.66 0.00 0.00 2.57
13 14 8.608317 TGGGATTTCGAAAAAGTTTCAAAATTC 58.392 29.630 15.66 2.84 0.00 2.17
14 15 8.499403 TGGGATTTCGAAAAAGTTTCAAAATT 57.501 26.923 15.66 0.00 0.00 1.82
15 16 8.499403 TTGGGATTTCGAAAAAGTTTCAAAAT 57.501 26.923 15.66 0.46 0.00 1.82
16 17 7.907214 TTGGGATTTCGAAAAAGTTTCAAAA 57.093 28.000 15.66 3.32 0.00 2.44
17 18 7.907214 TTTGGGATTTCGAAAAAGTTTCAAA 57.093 28.000 15.66 15.09 0.00 2.69
18 19 8.499403 AATTTGGGATTTCGAAAAAGTTTCAA 57.501 26.923 15.66 10.59 0.00 2.69
19 20 9.771534 ATAATTTGGGATTTCGAAAAAGTTTCA 57.228 25.926 15.66 5.33 0.00 2.69
44 45 9.438228 TCCGTTTTTGTTTTTCCTTCTTTAAAT 57.562 25.926 0.00 0.00 0.00 1.40
45 46 8.828688 TCCGTTTTTGTTTTTCCTTCTTTAAA 57.171 26.923 0.00 0.00 0.00 1.52
46 47 8.828688 TTCCGTTTTTGTTTTTCCTTCTTTAA 57.171 26.923 0.00 0.00 0.00 1.52
47 48 7.546316 CCTTCCGTTTTTGTTTTTCCTTCTTTA 59.454 33.333 0.00 0.00 0.00 1.85
48 49 6.370442 CCTTCCGTTTTTGTTTTTCCTTCTTT 59.630 34.615 0.00 0.00 0.00 2.52
49 50 5.872617 CCTTCCGTTTTTGTTTTTCCTTCTT 59.127 36.000 0.00 0.00 0.00 2.52
50 51 5.186215 TCCTTCCGTTTTTGTTTTTCCTTCT 59.814 36.000 0.00 0.00 0.00 2.85
51 52 5.412640 TCCTTCCGTTTTTGTTTTTCCTTC 58.587 37.500 0.00 0.00 0.00 3.46
52 53 5.408880 TCCTTCCGTTTTTGTTTTTCCTT 57.591 34.783 0.00 0.00 0.00 3.36
53 54 5.408880 TTCCTTCCGTTTTTGTTTTTCCT 57.591 34.783 0.00 0.00 0.00 3.36
54 55 6.483385 TTTTCCTTCCGTTTTTGTTTTTCC 57.517 33.333 0.00 0.00 0.00 3.13
89 90 7.439955 GGACCCATATTTTCTTGTTTCGTTTTT 59.560 33.333 0.00 0.00 0.00 1.94
90 91 6.926826 GGACCCATATTTTCTTGTTTCGTTTT 59.073 34.615 0.00 0.00 0.00 2.43
91 92 6.041069 TGGACCCATATTTTCTTGTTTCGTTT 59.959 34.615 0.00 0.00 0.00 3.60
92 93 5.536916 TGGACCCATATTTTCTTGTTTCGTT 59.463 36.000 0.00 0.00 0.00 3.85
93 94 5.074115 TGGACCCATATTTTCTTGTTTCGT 58.926 37.500 0.00 0.00 0.00 3.85
94 95 5.637006 TGGACCCATATTTTCTTGTTTCG 57.363 39.130 0.00 0.00 0.00 3.46
95 96 5.047377 TGCTGGACCCATATTTTCTTGTTTC 60.047 40.000 0.00 0.00 0.00 2.78
96 97 4.837860 TGCTGGACCCATATTTTCTTGTTT 59.162 37.500 0.00 0.00 0.00 2.83
97 98 4.220602 GTGCTGGACCCATATTTTCTTGTT 59.779 41.667 0.00 0.00 0.00 2.83
98 99 3.763897 GTGCTGGACCCATATTTTCTTGT 59.236 43.478 0.00 0.00 0.00 3.16
99 100 3.181497 CGTGCTGGACCCATATTTTCTTG 60.181 47.826 0.00 0.00 0.00 3.02
100 101 3.016736 CGTGCTGGACCCATATTTTCTT 58.983 45.455 0.00 0.00 0.00 2.52
101 102 2.238646 TCGTGCTGGACCCATATTTTCT 59.761 45.455 0.00 0.00 0.00 2.52
102 103 2.354821 GTCGTGCTGGACCCATATTTTC 59.645 50.000 0.00 0.00 0.00 2.29
103 104 2.365582 GTCGTGCTGGACCCATATTTT 58.634 47.619 0.00 0.00 0.00 1.82
104 105 2.038387 GTCGTGCTGGACCCATATTT 57.962 50.000 0.00 0.00 0.00 1.40
105 106 3.780624 GTCGTGCTGGACCCATATT 57.219 52.632 0.00 0.00 0.00 1.28
112 113 0.247736 AAGAGATGGTCGTGCTGGAC 59.752 55.000 0.00 0.00 36.18 4.02
113 114 0.532573 GAAGAGATGGTCGTGCTGGA 59.467 55.000 0.00 0.00 0.00 3.86
114 115 0.247460 TGAAGAGATGGTCGTGCTGG 59.753 55.000 0.00 0.00 0.00 4.85
115 116 1.203287 TCTGAAGAGATGGTCGTGCTG 59.797 52.381 0.00 0.00 0.00 4.41
116 117 1.550327 TCTGAAGAGATGGTCGTGCT 58.450 50.000 0.00 0.00 0.00 4.40
117 118 2.370281 TTCTGAAGAGATGGTCGTGC 57.630 50.000 0.00 0.00 0.00 5.34
118 119 5.445142 CGAATTTTCTGAAGAGATGGTCGTG 60.445 44.000 0.00 0.00 0.00 4.35
119 120 4.627467 CGAATTTTCTGAAGAGATGGTCGT 59.373 41.667 0.00 0.00 0.00 4.34
120 121 4.033358 CCGAATTTTCTGAAGAGATGGTCG 59.967 45.833 0.00 0.00 0.00 4.79
121 122 5.178797 TCCGAATTTTCTGAAGAGATGGTC 58.821 41.667 0.00 0.00 0.00 4.02
122 123 5.165961 TCCGAATTTTCTGAAGAGATGGT 57.834 39.130 0.00 0.00 0.00 3.55
123 124 5.065731 CCTTCCGAATTTTCTGAAGAGATGG 59.934 44.000 19.76 5.95 45.57 3.51
124 125 5.877012 TCCTTCCGAATTTTCTGAAGAGATG 59.123 40.000 19.76 8.26 45.57 2.90
125 126 6.054860 TCCTTCCGAATTTTCTGAAGAGAT 57.945 37.500 19.76 0.00 45.57 2.75
126 127 5.482908 CTCCTTCCGAATTTTCTGAAGAGA 58.517 41.667 19.76 15.07 45.57 3.10
127 128 4.633565 CCTCCTTCCGAATTTTCTGAAGAG 59.366 45.833 19.76 15.34 45.57 2.85
128 129 4.286032 TCCTCCTTCCGAATTTTCTGAAGA 59.714 41.667 19.76 9.53 45.57 2.87
129 130 4.393371 GTCCTCCTTCCGAATTTTCTGAAG 59.607 45.833 14.14 14.14 43.68 3.02
130 131 4.202419 TGTCCTCCTTCCGAATTTTCTGAA 60.202 41.667 0.00 0.00 0.00 3.02
131 132 3.326588 TGTCCTCCTTCCGAATTTTCTGA 59.673 43.478 0.00 0.00 0.00 3.27
132 133 3.437049 GTGTCCTCCTTCCGAATTTTCTG 59.563 47.826 0.00 0.00 0.00 3.02
133 134 3.072476 TGTGTCCTCCTTCCGAATTTTCT 59.928 43.478 0.00 0.00 0.00 2.52
134 135 3.408634 TGTGTCCTCCTTCCGAATTTTC 58.591 45.455 0.00 0.00 0.00 2.29
135 136 3.412386 CTGTGTCCTCCTTCCGAATTTT 58.588 45.455 0.00 0.00 0.00 1.82
136 137 2.290323 CCTGTGTCCTCCTTCCGAATTT 60.290 50.000 0.00 0.00 0.00 1.82
137 138 1.279271 CCTGTGTCCTCCTTCCGAATT 59.721 52.381 0.00 0.00 0.00 2.17
138 139 0.905357 CCTGTGTCCTCCTTCCGAAT 59.095 55.000 0.00 0.00 0.00 3.34
139 140 1.827399 GCCTGTGTCCTCCTTCCGAA 61.827 60.000 0.00 0.00 0.00 4.30
140 141 2.283529 GCCTGTGTCCTCCTTCCGA 61.284 63.158 0.00 0.00 0.00 4.55
141 142 2.266055 GCCTGTGTCCTCCTTCCG 59.734 66.667 0.00 0.00 0.00 4.30
142 143 2.671682 GGCCTGTGTCCTCCTTCC 59.328 66.667 0.00 0.00 0.00 3.46
143 144 2.190488 CTGGGCCTGTGTCCTCCTTC 62.190 65.000 4.53 0.00 37.08 3.46
144 145 2.121963 TGGGCCTGTGTCCTCCTT 60.122 61.111 4.53 0.00 37.08 3.36
145 146 2.608988 CTGGGCCTGTGTCCTCCT 60.609 66.667 4.53 0.00 37.08 3.69
146 147 4.416738 GCTGGGCCTGTGTCCTCC 62.417 72.222 12.33 0.00 37.08 4.30
147 148 4.416738 GGCTGGGCCTGTGTCCTC 62.417 72.222 12.33 0.00 46.69 3.71
159 160 3.736224 ATGGGCTGGTGAGGCTGG 61.736 66.667 0.00 0.00 44.36 4.85
160 161 2.439701 CATGGGCTGGTGAGGCTG 60.440 66.667 0.00 0.00 44.36 4.85
161 162 2.937689 ACATGGGCTGGTGAGGCT 60.938 61.111 0.00 0.00 44.36 4.58
162 163 2.753043 CACATGGGCTGGTGAGGC 60.753 66.667 0.00 0.00 44.21 4.70
163 164 2.753043 GCACATGGGCTGGTGAGG 60.753 66.667 14.19 0.00 37.18 3.86
164 165 2.753043 GGCACATGGGCTGGTGAG 60.753 66.667 21.47 0.00 37.18 3.51
165 166 3.578286 TGGCACATGGGCTGGTGA 61.578 61.111 21.47 0.00 43.83 4.02
177 178 0.242555 CGTTTGGGGTAACATGGCAC 59.757 55.000 0.00 0.00 39.74 5.01
178 179 1.528292 GCGTTTGGGGTAACATGGCA 61.528 55.000 0.00 0.00 39.74 4.92
179 180 1.214325 GCGTTTGGGGTAACATGGC 59.786 57.895 0.00 0.00 39.74 4.40
180 181 1.600511 GGGCGTTTGGGGTAACATGG 61.601 60.000 0.00 0.00 39.74 3.66
181 182 1.887301 GGGCGTTTGGGGTAACATG 59.113 57.895 0.00 0.00 39.74 3.21
182 183 1.676303 CGGGCGTTTGGGGTAACAT 60.676 57.895 0.00 0.00 39.74 2.71
183 184 2.281622 CGGGCGTTTGGGGTAACA 60.282 61.111 0.00 0.00 39.74 2.41
184 185 2.032376 TCGGGCGTTTGGGGTAAC 59.968 61.111 0.00 0.00 0.00 2.50
185 186 2.032376 GTCGGGCGTTTGGGGTAA 59.968 61.111 0.00 0.00 0.00 2.85
186 187 4.019312 GGTCGGGCGTTTGGGGTA 62.019 66.667 0.00 0.00 0.00 3.69
200 201 4.785453 CTCTTGGCGGGCTGGGTC 62.785 72.222 2.38 0.00 0.00 4.46
202 203 4.785453 GACTCTTGGCGGGCTGGG 62.785 72.222 2.38 0.00 0.00 4.45
203 204 4.785453 GGACTCTTGGCGGGCTGG 62.785 72.222 2.38 0.00 0.00 4.85
204 205 3.965539 CTGGACTCTTGGCGGGCTG 62.966 68.421 2.38 0.00 0.00 4.85
205 206 3.710722 CTGGACTCTTGGCGGGCT 61.711 66.667 2.38 0.00 0.00 5.19
210 211 4.742201 TCGCGCTGGACTCTTGGC 62.742 66.667 5.56 0.00 0.00 4.52
211 212 2.811317 GTCGCGCTGGACTCTTGG 60.811 66.667 5.56 0.00 34.09 3.61
212 213 2.811317 GGTCGCGCTGGACTCTTG 60.811 66.667 13.92 0.00 37.12 3.02
213 214 2.564553 GATGGTCGCGCTGGACTCTT 62.565 60.000 13.92 4.42 37.12 2.85
214 215 3.069980 GATGGTCGCGCTGGACTCT 62.070 63.158 13.92 3.42 37.12 3.24
215 216 2.583593 GATGGTCGCGCTGGACTC 60.584 66.667 13.92 6.28 37.12 3.36
216 217 3.069980 GAGATGGTCGCGCTGGACT 62.070 63.158 13.92 0.00 37.12 3.85
217 218 2.564553 AAGAGATGGTCGCGCTGGAC 62.565 60.000 5.56 6.34 36.18 4.02
218 219 2.351244 AAGAGATGGTCGCGCTGGA 61.351 57.895 5.56 0.00 0.00 3.86
219 220 2.169789 CAAGAGATGGTCGCGCTGG 61.170 63.158 5.56 0.00 0.00 4.85
220 221 1.144565 CTCAAGAGATGGTCGCGCTG 61.145 60.000 5.56 0.00 0.00 5.18
221 222 1.140589 CTCAAGAGATGGTCGCGCT 59.859 57.895 5.56 0.00 0.00 5.92
222 223 0.458543 TTCTCAAGAGATGGTCGCGC 60.459 55.000 0.00 0.00 37.29 6.86
223 224 1.996292 TTTCTCAAGAGATGGTCGCG 58.004 50.000 0.00 0.00 37.29 5.87
224 225 5.559799 GCATATTTTCTCAAGAGATGGTCGC 60.560 44.000 0.00 0.00 37.29 5.19
225 226 5.525012 TGCATATTTTCTCAAGAGATGGTCG 59.475 40.000 0.00 0.00 37.29 4.79
226 227 6.932356 TGCATATTTTCTCAAGAGATGGTC 57.068 37.500 0.00 0.00 37.29 4.02
227 228 7.707624 TTTGCATATTTTCTCAAGAGATGGT 57.292 32.000 0.00 0.00 37.29 3.55
228 229 8.991243 TTTTTGCATATTTTCTCAAGAGATGG 57.009 30.769 0.00 0.00 37.29 3.51
276 277 3.343941 AGCGTTTTTGTATGAGGGCTA 57.656 42.857 0.00 0.00 0.00 3.93
278 279 2.415491 GGAAGCGTTTTTGTATGAGGGC 60.415 50.000 0.00 0.00 0.00 5.19
287 288 2.196295 TGGTTTCGGAAGCGTTTTTG 57.804 45.000 0.38 0.00 36.06 2.44
376 406 2.107141 GGAGATGGGAGGCGTTCG 59.893 66.667 0.00 0.00 0.00 3.95
604 635 2.506865 CGATACGTCGGCTAAGCATAG 58.493 52.381 0.00 0.00 44.00 2.23
605 636 2.606717 CGATACGTCGGCTAAGCATA 57.393 50.000 0.00 0.00 44.00 3.14
711 743 2.586258 AAGTTCGCGTCTATGAGCAT 57.414 45.000 5.77 0.00 0.00 3.79
712 744 2.422479 ACTAAGTTCGCGTCTATGAGCA 59.578 45.455 5.77 0.00 0.00 4.26
981 1026 4.437239 CCATGGCTGTTGTTTGTTTGTTA 58.563 39.130 0.00 0.00 0.00 2.41
990 1035 1.180029 GAGATGCCATGGCTGTTGTT 58.820 50.000 35.53 16.03 42.51 2.83
1201 1271 4.276678 TCACCAGCTTCTGATTTTTCACTG 59.723 41.667 0.00 0.00 32.44 3.66
1542 1618 0.096628 GTTGCTGCTGCTCATCTTCG 59.903 55.000 17.00 0.00 40.48 3.79
1572 1648 4.989279 AGTTTTTGTCTCACTGCATTGT 57.011 36.364 3.77 0.00 0.00 2.71
1664 1740 2.605338 CCGAAACCTTGTCTGCAATGTG 60.605 50.000 0.00 0.00 34.49 3.21
1774 1853 3.810687 TTCCCAGGCTCCACCCAGT 62.811 63.158 0.00 0.00 40.58 4.00
1814 1905 7.672983 TCAAGAACTGTTTGTCCATAATCTC 57.327 36.000 0.00 0.00 0.00 2.75
1855 1946 8.199449 AGCTTTTTATCAACAATATCCCATGTG 58.801 33.333 0.00 0.00 0.00 3.21
1994 2085 6.989659 ACTGAGCAGAAATCACATGAAAAAT 58.010 32.000 0.00 0.00 0.00 1.82
2071 2162 7.067859 AGCACAAGAAGCATATTATCAACACAT 59.932 33.333 0.00 0.00 0.00 3.21
2190 2281 3.181329 AGGTCACCTGTAACATGGATCA 58.819 45.455 0.00 0.00 29.57 2.92
2212 2303 2.613026 TTCTCTCCAGAAACGCAACA 57.387 45.000 0.00 0.00 35.57 3.33
2455 2546 0.109272 TGCTAAGTTCGGTCTGCTCG 60.109 55.000 0.00 0.00 0.00 5.03
2636 2727 3.129988 GCTTTGGTCCTTTCATCTCCATG 59.870 47.826 0.00 0.00 0.00 3.66
2917 3008 3.009723 AGTTTTGTCATGGTATCGGCTG 58.990 45.455 0.00 0.00 0.00 4.85
3050 3141 8.622948 AGTACAGAAATAACTCCTTTTCCAAG 57.377 34.615 0.00 0.00 33.30 3.61
3181 3664 9.958180 TCAGAGTTATTTCATGTAAAATCAGGA 57.042 29.630 0.00 0.00 31.50 3.86
3191 3674 8.680903 GGATGAAACATCAGAGTTATTTCATGT 58.319 33.333 13.58 0.00 45.42 3.21
3192 3675 8.680001 TGGATGAAACATCAGAGTTATTTCATG 58.320 33.333 13.58 0.00 45.42 3.07
3194 3677 8.812513 ATGGATGAAACATCAGAGTTATTTCA 57.187 30.769 12.66 0.00 41.92 2.69
3679 4240 2.672098 AGCTTCCAGGTATCGAGTGAT 58.328 47.619 0.00 0.00 38.67 3.06
3760 4321 7.314393 ACGAGTAAGAAAACAGATAGGTTCTC 58.686 38.462 0.00 0.00 29.93 2.87
3823 4384 2.370281 TCTCGCTGAGGTCAAACATC 57.630 50.000 5.87 0.00 0.00 3.06
4209 4773 0.468226 ACTCCTGTCGCTTTGGAACA 59.532 50.000 0.00 0.00 0.00 3.18
4216 4780 3.241530 TGGCCACTCCTGTCGCTT 61.242 61.111 0.00 0.00 35.26 4.68
4218 4782 4.767255 CCTGGCCACTCCTGTCGC 62.767 72.222 0.00 0.00 35.26 5.19
4292 4856 0.384309 GATGACATACCGGACTGCGA 59.616 55.000 9.46 0.00 0.00 5.10
4410 4989 7.770801 AAAAATGGAGTGCTTCAAAACTAAC 57.229 32.000 0.00 0.00 0.00 2.34
4445 5025 4.953579 AGAAAACCAGTGCCTCAAAACTTA 59.046 37.500 0.00 0.00 0.00 2.24
4489 5069 2.342648 GACGGGTTCTGAACGGCT 59.657 61.111 13.89 0.00 31.77 5.52
4497 5077 1.420430 TGAGTTTCCTGACGGGTTCT 58.580 50.000 0.00 0.00 36.25 3.01
4520 5100 7.521099 GCAAACAGATTCAGATCAGAAAACTCA 60.521 37.037 4.51 0.00 34.60 3.41
4594 5176 4.821805 CCACAACACAAACCAGATAACTCT 59.178 41.667 0.00 0.00 0.00 3.24
4626 5208 2.319025 TGTAGGAGTGTCCACATGGA 57.681 50.000 0.00 0.00 39.61 3.41
4703 5286 4.332543 TCGCAATAAAATCAGCTACACCAG 59.667 41.667 0.00 0.00 0.00 4.00
4706 5289 7.740519 AAAATCGCAATAAAATCAGCTACAC 57.259 32.000 0.00 0.00 0.00 2.90
4710 5293 7.171337 ACAACAAAAATCGCAATAAAATCAGCT 59.829 29.630 0.00 0.00 0.00 4.24
4736 5320 3.706594 CTCAACTAGGACTTCCAGCCATA 59.293 47.826 0.00 0.00 38.89 2.74
4743 5342 5.011227 ACAAGAGTTCTCAACTAGGACTTCC 59.989 44.000 2.64 0.00 44.77 3.46
4750 5349 6.927294 ACCAAAACAAGAGTTCTCAACTAG 57.073 37.500 2.64 0.00 43.03 2.57
4753 5352 5.709966 ACAACCAAAACAAGAGTTCTCAAC 58.290 37.500 2.64 0.00 36.84 3.18
4766 5365 6.342111 TGGAAATTGGAAGTACAACCAAAAC 58.658 36.000 21.45 16.13 46.87 2.43
4767 5366 6.546428 TGGAAATTGGAAGTACAACCAAAA 57.454 33.333 21.45 6.55 46.87 2.44
4768 5367 6.739331 ATGGAAATTGGAAGTACAACCAAA 57.261 33.333 21.45 9.97 46.87 3.28
4772 5371 8.237267 CACTTCTATGGAAATTGGAAGTACAAC 58.763 37.037 0.00 0.00 42.82 3.32
4773 5372 7.942341 ACACTTCTATGGAAATTGGAAGTACAA 59.058 33.333 0.00 0.00 42.82 2.41
4774 5373 7.390440 CACACTTCTATGGAAATTGGAAGTACA 59.610 37.037 0.00 0.00 42.82 2.90
4775 5374 7.606456 TCACACTTCTATGGAAATTGGAAGTAC 59.394 37.037 0.00 0.00 42.82 2.73
4787 5386 1.893137 AGCGTGTCACACTTCTATGGA 59.107 47.619 6.33 0.00 31.34 3.41
4788 5387 1.995484 CAGCGTGTCACACTTCTATGG 59.005 52.381 6.33 0.00 31.34 2.74
4793 5392 2.287915 ACATTTCAGCGTGTCACACTTC 59.712 45.455 6.33 0.00 31.34 3.01
4794 5393 2.288666 ACATTTCAGCGTGTCACACTT 58.711 42.857 6.33 0.00 31.34 3.16
4796 5395 2.409752 CGTACATTTCAGCGTGTCACAC 60.410 50.000 0.00 0.00 0.00 3.82
4797 5396 1.790043 CGTACATTTCAGCGTGTCACA 59.210 47.619 3.42 0.00 0.00 3.58
4798 5397 1.126113 CCGTACATTTCAGCGTGTCAC 59.874 52.381 0.00 0.00 0.00 3.67
4799 5398 1.269883 ACCGTACATTTCAGCGTGTCA 60.270 47.619 0.00 0.00 0.00 3.58
4800 5399 1.425412 ACCGTACATTTCAGCGTGTC 58.575 50.000 0.00 0.00 0.00 3.67
4801 5400 2.728690 TACCGTACATTTCAGCGTGT 57.271 45.000 0.00 0.00 0.00 4.49
4817 5418 4.083003 TGTGAGCGGTCATGAATTTTTACC 60.083 41.667 21.66 3.57 34.36 2.85
4819 5420 4.379394 GCTGTGAGCGGTCATGAATTTTTA 60.379 41.667 21.66 0.00 34.36 1.52
4823 5424 1.089920 GCTGTGAGCGGTCATGAATT 58.910 50.000 21.66 0.00 34.36 2.17
4824 5425 0.745845 GGCTGTGAGCGGTCATGAAT 60.746 55.000 21.66 0.00 43.62 2.57
4826 5427 2.265739 GGCTGTGAGCGGTCATGA 59.734 61.111 21.66 9.71 43.62 3.07
4828 5429 4.101448 GGGGCTGTGAGCGGTCAT 62.101 66.667 21.66 0.00 43.62 3.06
4830 5431 4.329545 TTGGGGCTGTGAGCGGTC 62.330 66.667 7.89 7.89 43.62 4.79
4831 5432 4.335647 CTTGGGGCTGTGAGCGGT 62.336 66.667 0.00 0.00 43.62 5.68
4835 5436 3.933048 CTGGGCTTGGGGCTGTGAG 62.933 68.421 0.00 0.00 41.46 3.51
4836 5437 3.970410 CTGGGCTTGGGGCTGTGA 61.970 66.667 0.00 0.00 41.46 3.58
4837 5438 3.512154 TTCTGGGCTTGGGGCTGTG 62.512 63.158 0.00 0.00 41.46 3.66
4838 5439 3.185203 TTCTGGGCTTGGGGCTGT 61.185 61.111 0.00 0.00 41.46 4.40
4839 5440 2.362120 CTTCTGGGCTTGGGGCTG 60.362 66.667 0.00 0.00 41.46 4.85
4840 5441 4.372999 GCTTCTGGGCTTGGGGCT 62.373 66.667 0.00 0.00 41.46 5.19
4842 5443 4.766632 GGGCTTCTGGGCTTGGGG 62.767 72.222 0.00 0.00 40.65 4.96
4843 5444 3.651980 GAGGGCTTCTGGGCTTGGG 62.652 68.421 0.00 0.00 40.65 4.12
4844 5445 2.044551 GAGGGCTTCTGGGCTTGG 60.045 66.667 0.00 0.00 40.65 3.61
4845 5446 2.044551 GGAGGGCTTCTGGGCTTG 60.045 66.667 0.00 0.00 40.65 4.01
4846 5447 0.624500 TATGGAGGGCTTCTGGGCTT 60.625 55.000 0.00 0.00 40.65 4.35
4847 5448 0.624500 TTATGGAGGGCTTCTGGGCT 60.625 55.000 0.00 0.00 40.65 5.19
4848 5449 0.466372 GTTATGGAGGGCTTCTGGGC 60.466 60.000 0.00 0.00 40.05 5.36
4849 5450 1.216990 AGTTATGGAGGGCTTCTGGG 58.783 55.000 0.00 0.00 0.00 4.45
4850 5451 3.041946 AGTAGTTATGGAGGGCTTCTGG 58.958 50.000 0.00 0.00 0.00 3.86
4851 5452 3.964031 AGAGTAGTTATGGAGGGCTTCTG 59.036 47.826 0.00 0.00 0.00 3.02
4852 5453 4.219919 GAGAGTAGTTATGGAGGGCTTCT 58.780 47.826 0.00 0.00 0.00 2.85
4853 5454 3.004944 CGAGAGTAGTTATGGAGGGCTTC 59.995 52.174 0.00 0.00 0.00 3.86
4854 5455 2.959707 CGAGAGTAGTTATGGAGGGCTT 59.040 50.000 0.00 0.00 0.00 4.35
4855 5456 2.588620 CGAGAGTAGTTATGGAGGGCT 58.411 52.381 0.00 0.00 0.00 5.19
4856 5457 1.614413 CCGAGAGTAGTTATGGAGGGC 59.386 57.143 0.00 0.00 0.00 5.19
4857 5458 1.614413 GCCGAGAGTAGTTATGGAGGG 59.386 57.143 0.00 0.00 0.00 4.30
4858 5459 1.614413 GGCCGAGAGTAGTTATGGAGG 59.386 57.143 0.00 0.00 0.00 4.30
4859 5460 2.588620 AGGCCGAGAGTAGTTATGGAG 58.411 52.381 0.00 0.00 0.00 3.86
4860 5461 2.693591 CAAGGCCGAGAGTAGTTATGGA 59.306 50.000 0.00 0.00 0.00 3.41
4861 5462 2.224066 CCAAGGCCGAGAGTAGTTATGG 60.224 54.545 0.00 0.00 0.00 2.74
4862 5463 2.803492 GCCAAGGCCGAGAGTAGTTATG 60.803 54.545 0.00 0.00 34.56 1.90
4863 5464 1.413077 GCCAAGGCCGAGAGTAGTTAT 59.587 52.381 0.00 0.00 34.56 1.89
4864 5465 0.822164 GCCAAGGCCGAGAGTAGTTA 59.178 55.000 0.00 0.00 34.56 2.24
4865 5466 1.192146 TGCCAAGGCCGAGAGTAGTT 61.192 55.000 8.89 0.00 41.09 2.24
4866 5467 0.978146 ATGCCAAGGCCGAGAGTAGT 60.978 55.000 8.89 0.00 41.09 2.73
4867 5468 1.040646 TATGCCAAGGCCGAGAGTAG 58.959 55.000 8.89 0.00 41.09 2.57
4868 5469 1.717032 ATATGCCAAGGCCGAGAGTA 58.283 50.000 8.89 0.00 41.09 2.59
4869 5470 0.839946 AATATGCCAAGGCCGAGAGT 59.160 50.000 8.89 0.00 41.09 3.24
4870 5471 1.202687 TGAATATGCCAAGGCCGAGAG 60.203 52.381 8.89 0.00 41.09 3.20
4871 5472 0.836606 TGAATATGCCAAGGCCGAGA 59.163 50.000 8.89 0.00 41.09 4.04
4872 5473 0.947244 GTGAATATGCCAAGGCCGAG 59.053 55.000 8.89 0.00 41.09 4.63
4873 5474 0.465460 GGTGAATATGCCAAGGCCGA 60.465 55.000 8.89 0.00 41.09 5.54
4874 5475 1.785041 CGGTGAATATGCCAAGGCCG 61.785 60.000 8.89 0.00 41.09 6.13
4875 5476 2.032981 CGGTGAATATGCCAAGGCC 58.967 57.895 8.89 0.00 41.09 5.19
4876 5477 1.360192 GCGGTGAATATGCCAAGGC 59.640 57.895 3.61 3.61 42.35 4.35
4907 5508 2.036089 GCTCGGTACCAAGAATAGGGAG 59.964 54.545 13.54 7.92 0.00 4.30
4909 5510 2.040178 AGCTCGGTACCAAGAATAGGG 58.960 52.381 13.54 0.00 0.00 3.53
4914 5515 1.000506 GTCACAGCTCGGTACCAAGAA 59.999 52.381 13.54 0.00 0.00 2.52
4916 5517 0.389948 GGTCACAGCTCGGTACCAAG 60.390 60.000 13.54 3.53 0.00 3.61
4927 5528 4.034510 CGATAAAAGATCCAAGGTCACAGC 59.965 45.833 0.00 0.00 0.00 4.40
4931 5532 4.935205 CACACGATAAAAGATCCAAGGTCA 59.065 41.667 0.00 0.00 0.00 4.02
4932 5533 4.201822 GCACACGATAAAAGATCCAAGGTC 60.202 45.833 0.00 0.00 0.00 3.85
4939 5540 2.536928 GCCACGCACACGATAAAAGATC 60.537 50.000 0.00 0.00 43.93 2.75
4940 5541 1.396996 GCCACGCACACGATAAAAGAT 59.603 47.619 0.00 0.00 43.93 2.40
4941 5542 0.793861 GCCACGCACACGATAAAAGA 59.206 50.000 0.00 0.00 43.93 2.52
4942 5543 0.796312 AGCCACGCACACGATAAAAG 59.204 50.000 0.00 0.00 43.93 2.27
4943 5544 1.231221 AAGCCACGCACACGATAAAA 58.769 45.000 0.00 0.00 43.93 1.52
4944 5545 1.231221 AAAGCCACGCACACGATAAA 58.769 45.000 0.00 0.00 43.93 1.40
4945 5546 1.996898 CTAAAGCCACGCACACGATAA 59.003 47.619 0.00 0.00 43.93 1.75
4946 5547 1.635844 CTAAAGCCACGCACACGATA 58.364 50.000 0.00 0.00 43.93 2.92
4947 5548 1.019278 CCTAAAGCCACGCACACGAT 61.019 55.000 0.00 0.00 43.93 3.73
4948 5549 1.666553 CCTAAAGCCACGCACACGA 60.667 57.895 0.00 0.00 43.93 4.35
4950 5551 1.866925 GACCTAAAGCCACGCACAC 59.133 57.895 0.00 0.00 0.00 3.82
4951 5552 1.666553 CGACCTAAAGCCACGCACA 60.667 57.895 0.00 0.00 0.00 4.57
4952 5553 0.739813 ATCGACCTAAAGCCACGCAC 60.740 55.000 0.00 0.00 0.00 5.34
4953 5554 0.036765 AATCGACCTAAAGCCACGCA 60.037 50.000 0.00 0.00 0.00 5.24
4954 5555 1.062148 GAAATCGACCTAAAGCCACGC 59.938 52.381 0.00 0.00 0.00 5.34
4955 5556 2.348666 CAGAAATCGACCTAAAGCCACG 59.651 50.000 0.00 0.00 0.00 4.94
4956 5557 3.596214 TCAGAAATCGACCTAAAGCCAC 58.404 45.455 0.00 0.00 0.00 5.01
4957 5558 3.973206 TCAGAAATCGACCTAAAGCCA 57.027 42.857 0.00 0.00 0.00 4.75
4958 5559 5.220873 GGAAATCAGAAATCGACCTAAAGCC 60.221 44.000 0.00 0.00 0.00 4.35
4959 5560 5.354234 TGGAAATCAGAAATCGACCTAAAGC 59.646 40.000 0.00 0.00 0.00 3.51
4960 5561 6.595716 ACTGGAAATCAGAAATCGACCTAAAG 59.404 38.462 0.00 0.00 46.18 1.85
4985 5586 1.588674 CGTGTTGGACAGTAAAGGCA 58.411 50.000 0.00 0.00 0.00 4.75
4987 5588 1.531149 CAGCGTGTTGGACAGTAAAGG 59.469 52.381 0.00 0.00 0.00 3.11
4990 5591 1.218875 CGCAGCGTGTTGGACAGTAA 61.219 55.000 6.65 0.00 0.00 2.24
5016 5617 3.326297 AGGAAATCAGGATCGGATCTTCC 59.674 47.826 20.23 20.23 35.05 3.46
5096 5697 0.813821 GGCTCAGGGCAAGTCAAATC 59.186 55.000 0.00 0.00 44.01 2.17
5128 5729 5.119279 AGAGCATCGCATCGAAATACAATAC 59.881 40.000 0.00 0.00 42.67 1.89
5131 5732 3.245990 CAGAGCATCGCATCGAAATACAA 59.754 43.478 0.00 0.00 42.67 2.41
5189 5790 6.647895 GGATAGGTGTACAAAGACGAAAGAAA 59.352 38.462 0.00 0.00 0.00 2.52
5190 5791 6.161381 GGATAGGTGTACAAAGACGAAAGAA 58.839 40.000 0.00 0.00 0.00 2.52
5191 5792 5.244402 TGGATAGGTGTACAAAGACGAAAGA 59.756 40.000 0.00 0.00 0.00 2.52
5192 5793 5.475719 TGGATAGGTGTACAAAGACGAAAG 58.524 41.667 0.00 0.00 0.00 2.62
5193 5794 5.471556 TGGATAGGTGTACAAAGACGAAA 57.528 39.130 0.00 0.00 0.00 3.46
5194 5795 5.471556 TTGGATAGGTGTACAAAGACGAA 57.528 39.130 0.00 0.00 0.00 3.85
5195 5796 5.471556 TTTGGATAGGTGTACAAAGACGA 57.528 39.130 0.00 0.00 0.00 4.20
5196 5797 6.548441 TTTTTGGATAGGTGTACAAAGACG 57.452 37.500 0.00 0.00 34.69 4.18
5230 5831 9.980780 CAAAAAGTTCACGTTTTCCAATAATTT 57.019 25.926 1.20 0.00 35.85 1.82
5231 5832 9.372369 TCAAAAAGTTCACGTTTTCCAATAATT 57.628 25.926 1.20 0.00 35.85 1.40
5232 5833 8.934507 TCAAAAAGTTCACGTTTTCCAATAAT 57.065 26.923 1.20 0.00 35.85 1.28
5233 5834 8.244802 TCTCAAAAAGTTCACGTTTTCCAATAA 58.755 29.630 1.20 0.00 35.85 1.40
5234 5835 7.763356 TCTCAAAAAGTTCACGTTTTCCAATA 58.237 30.769 1.20 0.00 35.85 1.90
5235 5836 6.626302 TCTCAAAAAGTTCACGTTTTCCAAT 58.374 32.000 1.20 0.00 35.85 3.16
5236 5837 6.015027 TCTCAAAAAGTTCACGTTTTCCAA 57.985 33.333 1.20 0.00 35.85 3.53
5237 5838 5.630661 TCTCAAAAAGTTCACGTTTTCCA 57.369 34.783 1.20 0.00 35.85 3.53
5238 5839 6.750039 TGATTCTCAAAAAGTTCACGTTTTCC 59.250 34.615 1.20 0.00 35.85 3.13
5239 5840 7.272515 TGTGATTCTCAAAAAGTTCACGTTTTC 59.727 33.333 1.20 0.00 39.74 2.29
5240 5841 7.087639 TGTGATTCTCAAAAAGTTCACGTTTT 58.912 30.769 0.00 0.00 39.74 2.43
5241 5842 6.616947 TGTGATTCTCAAAAAGTTCACGTTT 58.383 32.000 0.00 0.00 39.74 3.60
5242 5843 6.189677 TGTGATTCTCAAAAAGTTCACGTT 57.810 33.333 0.00 0.00 39.74 3.99
5243 5844 5.811399 TGTGATTCTCAAAAAGTTCACGT 57.189 34.783 0.00 0.00 39.74 4.49
5244 5845 7.273381 AGTTTTGTGATTCTCAAAAAGTTCACG 59.727 33.333 21.67 0.00 43.27 4.35
5245 5846 8.466086 AGTTTTGTGATTCTCAAAAAGTTCAC 57.534 30.769 21.67 12.80 43.27 3.18
5246 5847 9.487790 AAAGTTTTGTGATTCTCAAAAAGTTCA 57.512 25.926 21.67 3.52 43.27 3.18
5272 5873 5.862323 TCGAAAATGTTCACGGTTTCAAAAA 59.138 32.000 0.00 0.00 32.89 1.94
5273 5874 5.399858 TCGAAAATGTTCACGGTTTCAAAA 58.600 33.333 0.00 0.00 32.89 2.44
5274 5875 4.982999 TCGAAAATGTTCACGGTTTCAAA 58.017 34.783 0.00 0.00 32.89 2.69
5275 5876 4.617808 TCGAAAATGTTCACGGTTTCAA 57.382 36.364 0.00 0.00 32.89 2.69
5276 5877 4.617808 TTCGAAAATGTTCACGGTTTCA 57.382 36.364 0.00 0.00 32.89 2.69
5277 5878 6.505039 AATTTCGAAAATGTTCACGGTTTC 57.495 33.333 15.66 0.00 32.89 2.78
5278 5879 7.197703 AGTAATTTCGAAAATGTTCACGGTTT 58.802 30.769 15.66 2.60 32.89 3.27
5279 5880 6.731164 AGTAATTTCGAAAATGTTCACGGTT 58.269 32.000 15.66 3.12 32.89 4.44
5280 5881 6.308371 AGTAATTTCGAAAATGTTCACGGT 57.692 33.333 15.66 0.00 32.89 4.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.