Multiple sequence alignment - TraesCS5D01G415900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G415900 chr5D 100.000 6674 0 0 1 6674 478448352 478455025 0.000000e+00 12325.0
1 TraesCS5D01G415900 chr5D 88.136 59 7 0 255 313 445027555 445027497 3.340000e-08 71.3
2 TraesCS5D01G415900 chr5D 88.136 59 7 0 255 313 445060091 445060033 3.340000e-08 71.3
3 TraesCS5D01G415900 chr5B 94.031 3535 118 37 2488 5982 586276858 586280339 0.000000e+00 5273.0
4 TraesCS5D01G415900 chr5B 94.346 1751 59 16 593 2317 586275133 586276869 0.000000e+00 2649.0
5 TraesCS5D01G415900 chr5B 91.401 721 20 15 5966 6674 586280522 586281212 0.000000e+00 950.0
6 TraesCS5D01G415900 chr5B 92.537 201 11 4 2304 2502 343951109 343950911 1.100000e-72 285.0
7 TraesCS5D01G415900 chr5B 84.259 216 24 4 3 217 586274120 586274326 1.130000e-47 202.0
8 TraesCS5D01G415900 chr5A 89.949 2358 140 41 3 2296 597498114 597500438 0.000000e+00 2952.0
9 TraesCS5D01G415900 chr5A 90.468 1238 47 30 4910 6121 597504305 597505497 0.000000e+00 1567.0
10 TraesCS5D01G415900 chr5A 93.503 785 34 13 3112 3885 597501286 597502064 0.000000e+00 1151.0
11 TraesCS5D01G415900 chr5A 84.615 702 50 20 3916 4581 597502063 597502742 0.000000e+00 645.0
12 TraesCS5D01G415900 chr5A 91.026 390 24 7 2488 2872 597500458 597500841 3.570000e-142 516.0
13 TraesCS5D01G415900 chr5A 89.398 415 19 10 6151 6557 597510493 597510890 3.590000e-137 499.0
14 TraesCS5D01G415900 chr5A 94.485 272 9 3 4567 4837 597504019 597504285 1.340000e-111 414.0
15 TraesCS5D01G415900 chr5A 86.611 239 15 6 2869 3091 597500879 597501116 1.440000e-61 248.0
16 TraesCS5D01G415900 chr4D 93.035 201 10 4 2295 2493 506103773 506103971 2.350000e-74 291.0
17 TraesCS5D01G415900 chr4D 94.624 186 8 2 2312 2496 401881595 401881411 3.050000e-73 287.0
18 TraesCS5D01G415900 chr4D 75.065 385 78 16 5161 5539 8411777 8412149 5.360000e-36 163.0
19 TraesCS5D01G415900 chr4D 90.476 105 10 0 5435 5539 8593368 8593264 9.020000e-29 139.0
20 TraesCS5D01G415900 chr4D 90.476 105 10 0 5435 5539 8623070 8622966 9.020000e-29 139.0
21 TraesCS5D01G415900 chr4D 90.196 102 10 0 5435 5536 32940069 32939968 4.200000e-27 134.0
22 TraesCS5D01G415900 chr3D 96.067 178 7 0 2310 2487 587946839 587946662 2.350000e-74 291.0
23 TraesCS5D01G415900 chr3D 94.149 188 11 0 2299 2486 378246583 378246770 3.050000e-73 287.0
24 TraesCS5D01G415900 chr6D 96.552 174 6 0 2315 2488 470664640 470664467 8.470000e-74 289.0
25 TraesCS5D01G415900 chr6D 94.118 187 10 1 2309 2494 123116553 123116367 3.940000e-72 283.0
26 TraesCS5D01G415900 chr4B 93.583 187 12 0 2307 2493 2436656 2436842 5.100000e-71 279.0
27 TraesCS5D01G415900 chr4B 74.813 401 72 22 5161 5548 15760790 15760406 3.220000e-33 154.0
28 TraesCS5D01G415900 chr1D 93.617 188 11 1 2310 2496 434389887 434389700 5.100000e-71 279.0
29 TraesCS5D01G415900 chr4A 90.566 106 10 0 5434 5539 595055513 595055618 2.510000e-29 141.0
30 TraesCS5D01G415900 chrUn 90.476 105 10 0 5435 5539 269814258 269814154 9.020000e-29 139.0
31 TraesCS5D01G415900 chr1B 85.263 95 11 3 144 236 513671963 513671870 1.980000e-15 95.3
32 TraesCS5D01G415900 chr1B 96.875 32 1 0 4855 4886 655272648 655272679 3.000000e-03 54.7
33 TraesCS5D01G415900 chr1A 79.355 155 13 9 379 515 103647239 103647392 2.560000e-14 91.6
34 TraesCS5D01G415900 chr7D 88.525 61 7 0 4828 4888 127215162 127215222 2.580000e-09 75.0
35 TraesCS5D01G415900 chr2B 82.759 87 11 2 440 526 793976422 793976340 2.580000e-09 75.0
36 TraesCS5D01G415900 chr6B 96.875 32 1 0 4855 4886 523508134 523508165 3.000000e-03 54.7
37 TraesCS5D01G415900 chr7A 100.000 28 0 0 4859 4886 43063465 43063492 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G415900 chr5D 478448352 478455025 6673 False 12325.000000 12325 100.000000 1 6674 1 chr5D.!!$F1 6673
1 TraesCS5D01G415900 chr5B 586274120 586281212 7092 False 2268.500000 5273 91.009250 3 6674 4 chr5B.!!$F1 6671
2 TraesCS5D01G415900 chr5A 597498114 597505497 7383 False 1070.428571 2952 90.093857 3 6121 7 chr5A.!!$F2 6118

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
894 1395 0.466739 GTCCACCCCCAAGTTTCGTT 60.467 55.000 0.00 0.00 0.00 3.85 F
2175 2688 0.249911 AACACACTGGCTTCGACCTC 60.250 55.000 0.00 0.00 0.00 3.85 F
2177 2690 0.888619 CACACTGGCTTCGACCTCTA 59.111 55.000 0.00 0.00 0.00 2.43 F
3844 4589 0.315251 TCGGCTATCATGAGCTTCCG 59.685 55.000 17.21 17.21 42.43 4.30 F
4046 4791 3.575256 ACATCTCTTTTGAGCAATGGCAA 59.425 39.130 0.00 0.00 45.83 4.52 F
5375 7474 1.134946 GCCACCATTGAATTTCTCGGG 59.865 52.381 0.00 0.00 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2471 2986 0.117340 ACAGGGGAGTGCCTAGAACT 59.883 55.000 0.00 0.00 0.00 3.01 R
3818 4563 2.355513 GCTCATGATAGCCGATCCCATT 60.356 50.000 0.00 0.00 36.45 3.16 R
4025 4770 3.861276 TGCCATTGCTCAAAAGAGATG 57.139 42.857 0.00 0.00 38.71 2.90 R
4948 7024 0.375454 TCAAAAGGTGTGTTCGTGCG 59.625 50.000 0.00 0.00 0.00 5.34 R
5413 7512 1.202114 CACATATGCACCACCACCAAC 59.798 52.381 1.58 0.00 0.00 3.77 R
6541 8848 0.107993 CAAGCAGGCACTAGCTAGCA 60.108 55.000 20.91 1.89 40.72 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.992689 TACGGGCCAGTGCGAGAA 60.993 61.111 19.68 0.00 38.85 2.87
80 81 0.733909 GACTCGGGGTCGTTTAACGG 60.734 60.000 17.59 1.04 42.81 4.44
86 87 2.591571 GGGTCGTTTAACGGCTCTAT 57.408 50.000 21.19 0.00 44.52 1.98
90 91 4.202050 GGGTCGTTTAACGGCTCTATTAGA 60.202 45.833 21.19 0.00 44.52 2.10
175 176 7.973048 ACTTGTGGTTGGATAGTTAGATAGA 57.027 36.000 0.00 0.00 0.00 1.98
188 189 5.395611 AGTTAGATAGACAGTGGTATCCCC 58.604 45.833 9.90 1.76 0.00 4.81
189 190 2.877866 AGATAGACAGTGGTATCCCCG 58.122 52.381 9.90 0.00 35.15 5.73
190 191 2.177233 AGATAGACAGTGGTATCCCCGT 59.823 50.000 9.90 0.00 35.15 5.28
191 192 3.396946 AGATAGACAGTGGTATCCCCGTA 59.603 47.826 9.90 0.00 35.15 4.02
201 203 2.423373 GGTATCCCCGTACACCAGAGTA 60.423 54.545 0.00 0.00 0.00 2.59
207 209 2.298163 CCCGTACACCAGAGTACAAGTT 59.702 50.000 0.00 0.00 43.49 2.66
216 435 7.959175 ACACCAGAGTACAAGTTCTACATTTA 58.041 34.615 0.00 0.00 0.00 1.40
230 449 7.334421 AGTTCTACATTTAACATTGATGCTCGT 59.666 33.333 0.00 0.00 0.00 4.18
264 502 4.491234 AGATGCTAGACTTACGGAATCG 57.509 45.455 0.00 0.00 43.02 3.34
279 517 3.547413 CGGAATCGCGTGTAGAGTTATGA 60.547 47.826 5.77 0.00 0.00 2.15
297 536 8.337118 AGTTATGATTGGAGAAGATTAGGGAA 57.663 34.615 0.00 0.00 0.00 3.97
298 537 8.435982 AGTTATGATTGGAGAAGATTAGGGAAG 58.564 37.037 0.00 0.00 0.00 3.46
313 552 2.166907 GGAAGAGAGGTCCCATCAGA 57.833 55.000 0.00 0.00 0.00 3.27
333 583 0.476771 GGGGTTGGTTGGTGAGAGAA 59.523 55.000 0.00 0.00 0.00 2.87
347 597 5.598830 TGGTGAGAGAAGAGTCTGTAAAACT 59.401 40.000 0.00 0.00 32.80 2.66
352 602 9.915629 TGAGAGAAGAGTCTGTAAAACTAATTC 57.084 33.333 0.00 0.00 32.80 2.17
357 607 8.983307 AAGAGTCTGTAAAACTAATTCGTAGG 57.017 34.615 0.00 0.00 33.68 3.18
358 608 8.120140 AGAGTCTGTAAAACTAATTCGTAGGT 57.880 34.615 0.00 0.00 33.68 3.08
359 609 9.236006 AGAGTCTGTAAAACTAATTCGTAGGTA 57.764 33.333 0.00 0.00 33.68 3.08
363 613 9.956720 TCTGTAAAACTAATTCGTAGGTATAGC 57.043 33.333 0.00 0.00 33.68 2.97
364 614 9.740239 CTGTAAAACTAATTCGTAGGTATAGCA 57.260 33.333 4.48 0.00 33.68 3.49
375 639 8.958175 TTCGTAGGTATAGCATTTTTGTTTTG 57.042 30.769 4.48 0.00 0.00 2.44
390 654 9.612066 ATTTTTGTTTTGTGGATGTATTTCAGT 57.388 25.926 0.00 0.00 0.00 3.41
391 655 9.442047 TTTTTGTTTTGTGGATGTATTTCAGTT 57.558 25.926 0.00 0.00 0.00 3.16
396 660 8.352942 GTTTTGTGGATGTATTTCAGTTCTTCT 58.647 33.333 0.00 0.00 0.00 2.85
400 664 4.943705 GGATGTATTTCAGTTCTTCTGGCA 59.056 41.667 0.00 0.00 43.76 4.92
406 670 1.881973 TCAGTTCTTCTGGCAATGTGC 59.118 47.619 0.00 0.00 43.76 4.57
417 681 2.184385 GCAATGTGCATTCGGAGAAG 57.816 50.000 0.00 0.00 42.96 2.85
418 682 1.739466 GCAATGTGCATTCGGAGAAGA 59.261 47.619 0.00 0.00 42.96 2.87
419 683 2.476854 GCAATGTGCATTCGGAGAAGAC 60.477 50.000 0.00 0.00 42.96 3.01
420 684 1.645034 ATGTGCATTCGGAGAAGACG 58.355 50.000 0.00 0.00 45.90 4.18
425 694 1.671850 GCATTCGGAGAAGACGTTCCA 60.672 52.381 4.94 0.00 45.90 3.53
449 730 4.740205 TCGACTATGAATGCTTCGTCAATC 59.260 41.667 0.00 0.00 0.00 2.67
471 752 1.838112 AAGATGATTTGCCGGCTCAA 58.162 45.000 29.70 20.61 0.00 3.02
474 755 2.360165 AGATGATTTGCCGGCTCAATTC 59.640 45.455 29.70 19.17 0.00 2.17
479 760 1.167851 TTGCCGGCTCAATTCTTCAG 58.832 50.000 29.70 0.00 0.00 3.02
491 772 5.668471 TCAATTCTTCAGAGGTGCTCATAG 58.332 41.667 0.00 0.00 32.06 2.23
497 778 4.410481 TCAGAGGTGCTCATAGGGATAT 57.590 45.455 0.00 0.00 32.06 1.63
504 785 2.639347 TGCTCATAGGGATATGGTGTGG 59.361 50.000 0.00 0.00 0.00 4.17
507 788 4.425772 CTCATAGGGATATGGTGTGGGTA 58.574 47.826 0.00 0.00 0.00 3.69
512 793 1.578583 GATATGGTGTGGGTACGTGC 58.421 55.000 0.00 0.00 0.00 5.34
515 796 0.676466 ATGGTGTGGGTACGTGCATG 60.676 55.000 5.86 3.82 0.00 4.06
517 798 2.740440 TGTGGGTACGTGCATGCG 60.740 61.111 14.09 1.59 37.94 4.73
519 800 2.031314 TGGGTACGTGCATGCGTT 59.969 55.556 14.09 1.69 43.04 4.84
520 801 1.598407 TGGGTACGTGCATGCGTTT 60.598 52.632 14.09 1.29 43.04 3.60
523 804 2.203401 GGGTACGTGCATGCGTTTATA 58.797 47.619 14.09 0.00 43.04 0.98
526 807 2.303163 ACGTGCATGCGTTTATAGGA 57.697 45.000 14.09 0.00 43.04 2.94
540 821 7.492020 TGCGTTTATAGGAATGTTTATACGTGT 59.508 33.333 0.00 0.00 0.00 4.49
558 839 6.583912 ACGTGTATATATGTGAGTGTTTGC 57.416 37.500 0.00 0.00 0.00 3.68
559 840 5.231357 ACGTGTATATATGTGAGTGTTTGCG 59.769 40.000 0.00 0.00 0.00 4.85
575 857 7.906160 AGTGTTTGCGCTTATACTATGTTAAG 58.094 34.615 9.73 0.00 29.98 1.85
580 862 9.763465 TTTGCGCTTATACTATGTTAAGAAAAC 57.237 29.630 9.73 0.00 0.00 2.43
894 1395 0.466739 GTCCACCCCCAAGTTTCGTT 60.467 55.000 0.00 0.00 0.00 3.85
979 1486 2.886523 TGGCCTTGTCTGTTCTTGATTG 59.113 45.455 3.32 0.00 0.00 2.67
990 1497 4.253685 TGTTCTTGATTGGTCGATTCTCC 58.746 43.478 0.00 0.00 0.00 3.71
1086 1593 1.681666 CTCCTTCTTGCAGCTCCCA 59.318 57.895 0.00 0.00 0.00 4.37
1260 1767 2.124151 AAGATCATGGCGCACCCC 60.124 61.111 10.83 0.00 33.59 4.95
1577 2084 2.400798 GTCGCGTGATGCCATGTG 59.599 61.111 5.77 0.00 42.08 3.21
1578 2085 2.100031 GTCGCGTGATGCCATGTGA 61.100 57.895 5.77 0.00 44.06 3.58
1579 2086 1.153389 TCGCGTGATGCCATGTGAT 60.153 52.632 5.77 0.00 42.13 3.06
1580 2087 0.744057 TCGCGTGATGCCATGTGATT 60.744 50.000 5.77 0.00 42.13 2.57
1616 2123 2.363680 CCTGTACTGATTCCGAGCTCAT 59.636 50.000 15.40 0.00 0.00 2.90
1654 2161 1.660560 CCTACTGCAACATGCTGGCC 61.661 60.000 12.76 0.00 45.06 5.36
1760 2267 8.321353 TCACATTCACAGGTATACTCAGATTTT 58.679 33.333 2.25 0.00 0.00 1.82
1916 2423 4.320456 CCTGCCACTGCCACGACT 62.320 66.667 0.00 0.00 36.33 4.18
1936 2443 3.893200 ACTACCTTTGCCCCTTTGTTTAC 59.107 43.478 0.00 0.00 0.00 2.01
1941 2448 4.830600 CCTTTGCCCCTTTGTTTACTTAGA 59.169 41.667 0.00 0.00 0.00 2.10
1955 2462 5.763239 TTACTTAGAGGAGGGGATAAGGT 57.237 43.478 0.00 0.00 31.03 3.50
2006 2513 3.275617 AATAACACCGGCATCTTAGCA 57.724 42.857 0.00 0.00 35.83 3.49
2142 2655 7.711339 ACCTTCGGCTCTCAGTTTATAATTAAG 59.289 37.037 0.00 0.00 0.00 1.85
2165 2678 3.186409 CACGATTGGAAGTAACACACTGG 59.814 47.826 0.00 0.00 37.63 4.00
2170 2683 1.798813 GGAAGTAACACACTGGCTTCG 59.201 52.381 0.00 0.00 37.63 3.79
2175 2688 0.249911 AACACACTGGCTTCGACCTC 60.250 55.000 0.00 0.00 0.00 3.85
2177 2690 0.888619 CACACTGGCTTCGACCTCTA 59.111 55.000 0.00 0.00 0.00 2.43
2178 2691 1.135257 CACACTGGCTTCGACCTCTAG 60.135 57.143 0.00 0.00 0.00 2.43
2243 2758 3.861341 GGCATGTGGCTTAGTCTCA 57.139 52.632 0.00 0.00 44.01 3.27
2254 2769 2.101750 GCTTAGTCTCACTCTTAGGGCC 59.898 54.545 0.00 0.00 0.00 5.80
2305 2820 8.893727 AGTTTAATCATCTATGTGGTTTAGCAC 58.106 33.333 5.17 5.17 0.00 4.40
2307 2822 6.932356 AATCATCTATGTGGTTTAGCACTG 57.068 37.500 12.65 3.42 0.00 3.66
2308 2823 5.420725 TCATCTATGTGGTTTAGCACTGT 57.579 39.130 12.65 5.09 0.00 3.55
2309 2824 5.804639 TCATCTATGTGGTTTAGCACTGTT 58.195 37.500 12.65 1.98 0.00 3.16
2310 2825 6.237901 TCATCTATGTGGTTTAGCACTGTTT 58.762 36.000 12.65 0.00 0.00 2.83
2311 2826 7.390823 TCATCTATGTGGTTTAGCACTGTTTA 58.609 34.615 12.65 0.00 0.00 2.01
2312 2827 7.880713 TCATCTATGTGGTTTAGCACTGTTTAA 59.119 33.333 12.65 0.00 0.00 1.52
2314 2829 8.263940 TCTATGTGGTTTAGCACTGTTTAATC 57.736 34.615 12.65 0.00 0.00 1.75
2315 2830 6.892658 ATGTGGTTTAGCACTGTTTAATCA 57.107 33.333 12.65 0.00 0.00 2.57
2316 2831 6.312399 TGTGGTTTAGCACTGTTTAATCAG 57.688 37.500 11.26 11.26 40.80 2.90
2318 2833 6.320164 TGTGGTTTAGCACTGTTTAATCAGTT 59.680 34.615 15.08 6.34 44.92 3.16
2319 2834 7.147983 TGTGGTTTAGCACTGTTTAATCAGTTT 60.148 33.333 15.08 9.95 44.92 2.66
2320 2835 7.704899 GTGGTTTAGCACTGTTTAATCAGTTTT 59.295 33.333 15.08 9.66 44.92 2.43
2321 2836 7.704472 TGGTTTAGCACTGTTTAATCAGTTTTG 59.296 33.333 15.08 7.20 44.92 2.44
2322 2837 7.306574 GGTTTAGCACTGTTTAATCAGTTTTGC 60.307 37.037 15.08 15.02 44.92 3.68
2323 2838 5.520376 AGCACTGTTTAATCAGTTTTGCT 57.480 34.783 17.80 17.80 44.92 3.91
2324 2839 6.633500 AGCACTGTTTAATCAGTTTTGCTA 57.367 33.333 20.29 0.00 44.92 3.49
2325 2840 6.672147 AGCACTGTTTAATCAGTTTTGCTAG 58.328 36.000 20.29 9.54 44.92 3.42
2326 2841 6.486657 AGCACTGTTTAATCAGTTTTGCTAGA 59.513 34.615 20.29 0.00 44.92 2.43
2327 2842 7.013274 AGCACTGTTTAATCAGTTTTGCTAGAA 59.987 33.333 20.29 0.00 44.92 2.10
2328 2843 7.113544 GCACTGTTTAATCAGTTTTGCTAGAAC 59.886 37.037 15.08 0.00 44.92 3.01
2329 2844 8.345565 CACTGTTTAATCAGTTTTGCTAGAACT 58.654 33.333 15.08 0.00 44.92 3.01
2330 2845 8.560374 ACTGTTTAATCAGTTTTGCTAGAACTC 58.440 33.333 12.48 0.00 44.92 3.01
2331 2846 8.445275 TGTTTAATCAGTTTTGCTAGAACTCA 57.555 30.769 0.00 0.00 35.26 3.41
2332 2847 9.066892 TGTTTAATCAGTTTTGCTAGAACTCAT 57.933 29.630 0.00 0.00 35.26 2.90
2333 2848 9.548208 GTTTAATCAGTTTTGCTAGAACTCATC 57.452 33.333 0.00 0.00 35.26 2.92
2334 2849 9.507329 TTTAATCAGTTTTGCTAGAACTCATCT 57.493 29.630 0.00 0.00 42.48 2.90
2353 2868 9.303116 ACTCATCTAGACGAGATATAATTTGGT 57.697 33.333 22.00 0.00 43.52 3.67
2354 2869 9.781834 CTCATCTAGACGAGATATAATTTGGTC 57.218 37.037 10.32 0.00 43.52 4.02
2355 2870 9.521841 TCATCTAGACGAGATATAATTTGGTCT 57.478 33.333 0.00 0.00 43.52 3.85
2356 2871 9.781834 CATCTAGACGAGATATAATTTGGTCTC 57.218 37.037 0.00 0.80 43.52 3.36
2357 2872 8.919777 TCTAGACGAGATATAATTTGGTCTCA 57.080 34.615 11.67 0.00 37.53 3.27
2358 2873 9.521841 TCTAGACGAGATATAATTTGGTCTCAT 57.478 33.333 11.67 0.32 37.53 2.90
2361 2876 8.642432 AGACGAGATATAATTTGGTCTCATTCA 58.358 33.333 11.67 0.00 37.53 2.57
2362 2877 9.429359 GACGAGATATAATTTGGTCTCATTCAT 57.571 33.333 11.67 0.00 37.53 2.57
2363 2878 9.429359 ACGAGATATAATTTGGTCTCATTCATC 57.571 33.333 11.67 0.00 37.53 2.92
2364 2879 9.650539 CGAGATATAATTTGGTCTCATTCATCT 57.349 33.333 11.67 0.00 37.53 2.90
2373 2888 7.807977 TTGGTCTCATTCATCTTTTATAGCC 57.192 36.000 0.00 0.00 0.00 3.93
2374 2889 6.899089 TGGTCTCATTCATCTTTTATAGCCA 58.101 36.000 0.00 0.00 0.00 4.75
2375 2890 7.520798 TGGTCTCATTCATCTTTTATAGCCAT 58.479 34.615 0.00 0.00 0.00 4.40
2376 2891 8.000709 TGGTCTCATTCATCTTTTATAGCCATT 58.999 33.333 0.00 0.00 0.00 3.16
2377 2892 8.295288 GGTCTCATTCATCTTTTATAGCCATTG 58.705 37.037 0.00 0.00 0.00 2.82
2378 2893 8.295288 GTCTCATTCATCTTTTATAGCCATTGG 58.705 37.037 0.00 0.00 0.00 3.16
2379 2894 8.219868 TCTCATTCATCTTTTATAGCCATTGGA 58.780 33.333 6.95 0.00 0.00 3.53
2380 2895 8.945195 TCATTCATCTTTTATAGCCATTGGAT 57.055 30.769 6.95 1.78 0.00 3.41
2387 2902 8.284945 TCTTTTATAGCCATTGGATATGATGC 57.715 34.615 21.07 0.00 34.94 3.91
2388 2903 8.111545 TCTTTTATAGCCATTGGATATGATGCT 58.888 33.333 21.07 4.64 34.94 3.79
2389 2904 9.399797 CTTTTATAGCCATTGGATATGATGCTA 57.600 33.333 21.07 6.59 34.94 3.49
2390 2905 9.925545 TTTTATAGCCATTGGATATGATGCTAT 57.074 29.630 21.07 12.50 34.94 2.97
2394 2909 7.204243 AGCCATTGGATATGATGCTATAAGA 57.796 36.000 6.95 0.00 0.00 2.10
2395 2910 7.813331 AGCCATTGGATATGATGCTATAAGAT 58.187 34.615 6.95 0.00 0.00 2.40
2396 2911 7.720074 AGCCATTGGATATGATGCTATAAGATG 59.280 37.037 6.95 0.00 0.00 2.90
2397 2912 7.521748 GCCATTGGATATGATGCTATAAGATGC 60.522 40.741 6.95 0.00 0.00 3.91
2398 2913 7.307811 CCATTGGATATGATGCTATAAGATGCG 60.308 40.741 0.00 0.00 0.00 4.73
2399 2914 6.225981 TGGATATGATGCTATAAGATGCGT 57.774 37.500 0.00 0.00 0.00 5.24
2400 2915 6.044682 TGGATATGATGCTATAAGATGCGTG 58.955 40.000 0.00 0.00 0.00 5.34
2401 2916 6.045318 GGATATGATGCTATAAGATGCGTGT 58.955 40.000 0.00 0.00 0.00 4.49
2402 2917 7.147915 TGGATATGATGCTATAAGATGCGTGTA 60.148 37.037 0.00 0.00 0.00 2.90
2403 2918 7.869937 GGATATGATGCTATAAGATGCGTGTAT 59.130 37.037 0.00 0.00 0.00 2.29
2404 2919 9.899226 GATATGATGCTATAAGATGCGTGTATA 57.101 33.333 0.00 0.00 0.00 1.47
2405 2920 7.993821 ATGATGCTATAAGATGCGTGTATAC 57.006 36.000 0.00 0.00 0.00 1.47
2406 2921 7.158099 TGATGCTATAAGATGCGTGTATACT 57.842 36.000 4.17 0.00 0.00 2.12
2407 2922 7.029563 TGATGCTATAAGATGCGTGTATACTG 58.970 38.462 4.17 0.00 0.00 2.74
2408 2923 6.569179 TGCTATAAGATGCGTGTATACTGA 57.431 37.500 4.17 0.00 0.00 3.41
2409 2924 6.379386 TGCTATAAGATGCGTGTATACTGAC 58.621 40.000 4.17 0.00 0.00 3.51
2410 2925 5.508573 GCTATAAGATGCGTGTATACTGACG 59.491 44.000 10.50 10.50 38.63 4.35
2411 2926 3.777465 AAGATGCGTGTATACTGACGT 57.223 42.857 14.84 0.00 37.89 4.34
2412 2927 4.888038 AAGATGCGTGTATACTGACGTA 57.112 40.909 14.84 11.81 37.89 3.57
2413 2928 4.469625 AGATGCGTGTATACTGACGTAG 57.530 45.455 14.84 0.00 37.89 3.51
2414 2929 3.250280 AGATGCGTGTATACTGACGTAGG 59.750 47.826 14.84 0.00 37.89 3.18
2415 2930 2.358957 TGCGTGTATACTGACGTAGGT 58.641 47.619 14.84 0.00 37.89 3.08
2416 2931 2.749076 TGCGTGTATACTGACGTAGGTT 59.251 45.455 14.84 0.00 37.89 3.50
2417 2932 3.103738 GCGTGTATACTGACGTAGGTTG 58.896 50.000 14.84 0.00 37.89 3.77
2418 2933 3.426695 GCGTGTATACTGACGTAGGTTGT 60.427 47.826 14.84 0.00 37.89 3.32
2419 2934 4.201812 GCGTGTATACTGACGTAGGTTGTA 60.202 45.833 14.84 0.00 37.89 2.41
2420 2935 5.504665 GCGTGTATACTGACGTAGGTTGTAT 60.505 44.000 14.84 14.82 37.89 2.29
2421 2936 6.132056 CGTGTATACTGACGTAGGTTGTATC 58.868 44.000 14.22 9.54 32.38 2.24
2422 2937 6.018425 CGTGTATACTGACGTAGGTTGTATCT 60.018 42.308 14.22 2.06 32.38 1.98
2423 2938 7.130917 GTGTATACTGACGTAGGTTGTATCTG 58.869 42.308 14.22 0.00 32.38 2.90
2424 2939 6.825213 TGTATACTGACGTAGGTTGTATCTGT 59.175 38.462 14.22 4.57 32.38 3.41
2425 2940 6.770746 ATACTGACGTAGGTTGTATCTGTT 57.229 37.500 0.00 0.00 0.00 3.16
2426 2941 5.464030 ACTGACGTAGGTTGTATCTGTTT 57.536 39.130 0.00 0.00 0.00 2.83
2427 2942 5.850614 ACTGACGTAGGTTGTATCTGTTTT 58.149 37.500 0.00 0.00 0.00 2.43
2428 2943 6.285990 ACTGACGTAGGTTGTATCTGTTTTT 58.714 36.000 0.00 0.00 0.00 1.94
2429 2944 6.202188 ACTGACGTAGGTTGTATCTGTTTTTG 59.798 38.462 0.00 0.00 0.00 2.44
2430 2945 6.050432 TGACGTAGGTTGTATCTGTTTTTGT 58.950 36.000 0.00 0.00 0.00 2.83
2431 2946 6.539464 TGACGTAGGTTGTATCTGTTTTTGTT 59.461 34.615 0.00 0.00 0.00 2.83
2432 2947 7.066043 TGACGTAGGTTGTATCTGTTTTTGTTT 59.934 33.333 0.00 0.00 0.00 2.83
2433 2948 7.764331 ACGTAGGTTGTATCTGTTTTTGTTTT 58.236 30.769 0.00 0.00 0.00 2.43
2434 2949 7.911727 ACGTAGGTTGTATCTGTTTTTGTTTTC 59.088 33.333 0.00 0.00 0.00 2.29
2435 2950 7.911205 CGTAGGTTGTATCTGTTTTTGTTTTCA 59.089 33.333 0.00 0.00 0.00 2.69
2436 2951 9.575783 GTAGGTTGTATCTGTTTTTGTTTTCAA 57.424 29.630 0.00 0.00 38.10 2.69
2437 2952 8.702163 AGGTTGTATCTGTTTTTGTTTTCAAG 57.298 30.769 0.00 0.00 41.09 3.02
2438 2953 7.763985 AGGTTGTATCTGTTTTTGTTTTCAAGG 59.236 33.333 0.00 0.00 41.09 3.61
2439 2954 7.547722 GGTTGTATCTGTTTTTGTTTTCAAGGT 59.452 33.333 0.00 0.00 41.09 3.50
2440 2955 8.379902 GTTGTATCTGTTTTTGTTTTCAAGGTG 58.620 33.333 0.00 0.00 41.09 4.00
2441 2956 7.831753 TGTATCTGTTTTTGTTTTCAAGGTGA 58.168 30.769 0.00 0.00 41.09 4.02
2442 2957 8.307483 TGTATCTGTTTTTGTTTTCAAGGTGAA 58.693 29.630 0.00 0.00 41.09 3.18
2443 2958 9.313118 GTATCTGTTTTTGTTTTCAAGGTGAAT 57.687 29.630 0.00 0.00 41.09 2.57
2444 2959 7.593875 TCTGTTTTTGTTTTCAAGGTGAATG 57.406 32.000 0.00 0.00 41.09 2.67
2445 2960 7.382110 TCTGTTTTTGTTTTCAAGGTGAATGA 58.618 30.769 0.00 0.00 41.09 2.57
2446 2961 7.545265 TCTGTTTTTGTTTTCAAGGTGAATGAG 59.455 33.333 0.00 0.00 41.09 2.90
2447 2962 7.382110 TGTTTTTGTTTTCAAGGTGAATGAGA 58.618 30.769 0.00 0.00 41.09 3.27
2448 2963 7.330700 TGTTTTTGTTTTCAAGGTGAATGAGAC 59.669 33.333 0.00 0.00 41.09 3.36
2449 2964 5.514274 TTGTTTTCAAGGTGAATGAGACC 57.486 39.130 0.00 0.00 36.11 3.85
2450 2965 4.531854 TGTTTTCAAGGTGAATGAGACCA 58.468 39.130 0.00 0.00 36.11 4.02
2451 2966 4.952957 TGTTTTCAAGGTGAATGAGACCAA 59.047 37.500 0.00 0.00 36.11 3.67
2452 2967 5.420421 TGTTTTCAAGGTGAATGAGACCAAA 59.580 36.000 0.00 0.00 36.11 3.28
2453 2968 6.098124 TGTTTTCAAGGTGAATGAGACCAAAT 59.902 34.615 0.00 0.00 36.11 2.32
2454 2969 6.729690 TTTCAAGGTGAATGAGACCAAATT 57.270 33.333 0.00 0.00 36.11 1.82
2455 2970 7.831691 TTTCAAGGTGAATGAGACCAAATTA 57.168 32.000 0.00 0.00 36.11 1.40
2456 2971 8.421249 TTTCAAGGTGAATGAGACCAAATTAT 57.579 30.769 0.00 0.00 36.11 1.28
2457 2972 9.527157 TTTCAAGGTGAATGAGACCAAATTATA 57.473 29.630 0.00 0.00 36.11 0.98
2458 2973 9.699410 TTCAAGGTGAATGAGACCAAATTATAT 57.301 29.630 0.00 0.00 35.76 0.86
2459 2974 9.342308 TCAAGGTGAATGAGACCAAATTATATC 57.658 33.333 0.00 0.00 35.76 1.63
2460 2975 9.347240 CAAGGTGAATGAGACCAAATTATATCT 57.653 33.333 0.00 0.00 35.76 1.98
2461 2976 9.566432 AAGGTGAATGAGACCAAATTATATCTC 57.434 33.333 0.00 6.03 38.46 2.75
2483 2998 6.798427 TCATCTAAATGAGTTCTAGGCACT 57.202 37.500 0.00 0.00 38.74 4.40
2484 2999 6.810911 TCATCTAAATGAGTTCTAGGCACTC 58.189 40.000 13.40 13.40 37.09 3.51
2485 3000 5.599999 TCTAAATGAGTTCTAGGCACTCC 57.400 43.478 16.20 4.17 40.12 3.85
2486 3001 3.636153 AAATGAGTTCTAGGCACTCCC 57.364 47.619 16.20 0.00 40.12 4.30
2564 3079 8.967918 TCCACATAGGGATTATAAATCGAGTAG 58.032 37.037 0.00 0.00 38.24 2.57
2598 3114 1.471287 GGCCTTGTTATTCGGTGGAAC 59.529 52.381 0.00 0.00 34.37 3.62
2623 3139 6.238842 CCAGTAGTGATTTAATTGGGATGCAG 60.239 42.308 0.00 0.00 0.00 4.41
2624 3140 6.543465 CAGTAGTGATTTAATTGGGATGCAGA 59.457 38.462 0.00 0.00 0.00 4.26
2625 3141 7.067372 CAGTAGTGATTTAATTGGGATGCAGAA 59.933 37.037 0.00 0.00 0.00 3.02
2923 3490 7.861629 TGTATCCTATTGGTGAAGAGACATTT 58.138 34.615 0.00 0.00 34.23 2.32
2937 3504 4.567959 AGAGACATTTTTGTTTGCACAAGC 59.432 37.500 0.00 0.00 43.92 4.01
2938 3505 4.506758 AGACATTTTTGTTTGCACAAGCT 58.493 34.783 0.00 0.00 43.92 3.74
2945 3512 3.591196 TGTTTGCACAAGCTTTTCACT 57.409 38.095 0.00 0.00 42.74 3.41
2949 3516 2.296792 TGCACAAGCTTTTCACTGCTA 58.703 42.857 0.00 0.00 42.74 3.49
2952 3530 3.916776 GCACAAGCTTTTCACTGCTATTC 59.083 43.478 0.00 0.00 38.75 1.75
2960 3538 3.592898 TTCACTGCTATTCGCTGAAGA 57.407 42.857 0.00 0.00 40.42 2.87
2995 3577 7.398829 TGACTACTTGTTTAATAATGCCCTCA 58.601 34.615 0.00 0.00 0.00 3.86
2998 3580 9.914834 ACTACTTGTTTAATAATGCCCTCAATA 57.085 29.630 0.00 0.00 0.00 1.90
3038 3620 3.903714 TCACCTCTTCAGATCAGGTCAAA 59.096 43.478 0.00 0.00 38.57 2.69
3056 3638 7.218773 CAGGTCAAAATGTTAATCGTTATGCAG 59.781 37.037 0.00 0.00 0.00 4.41
3069 3653 6.699895 TCGTTATGCAGTACTACTTGTTTG 57.300 37.500 0.00 0.00 0.00 2.93
3076 3660 6.584488 TGCAGTACTACTTGTTTGTTTAGGA 58.416 36.000 0.00 0.00 0.00 2.94
3099 3683 7.993183 AGGAACTGTACCATTAAGGATAATGTG 59.007 37.037 7.55 3.06 41.62 3.21
3103 3687 7.092174 ACTGTACCATTAAGGATAATGTGGGAA 60.092 37.037 7.55 0.00 44.56 3.97
3104 3688 7.057894 TGTACCATTAAGGATAATGTGGGAAC 58.942 38.462 7.55 0.00 44.56 3.62
3105 3689 6.341408 ACCATTAAGGATAATGTGGGAACT 57.659 37.500 7.55 0.00 44.56 3.01
3109 3693 8.539544 CCATTAAGGATAATGTGGGAACTTTTT 58.460 33.333 7.55 0.00 44.56 1.94
3142 3875 5.105595 TCGATGTGGGAGCATTCATATAGAG 60.106 44.000 0.00 0.00 0.00 2.43
3144 3877 5.474578 TGTGGGAGCATTCATATAGAGAC 57.525 43.478 0.00 0.00 0.00 3.36
3145 3878 5.150715 TGTGGGAGCATTCATATAGAGACT 58.849 41.667 0.00 0.00 0.00 3.24
3146 3879 6.314917 TGTGGGAGCATTCATATAGAGACTA 58.685 40.000 0.00 0.00 0.00 2.59
3148 3881 7.039434 TGTGGGAGCATTCATATAGAGACTAAG 60.039 40.741 0.00 0.00 0.00 2.18
3150 3883 7.395772 TGGGAGCATTCATATAGAGACTAAGAG 59.604 40.741 0.00 0.00 0.00 2.85
3151 3884 7.147915 GGGAGCATTCATATAGAGACTAAGAGG 60.148 44.444 0.00 0.00 0.00 3.69
3152 3885 7.169158 AGCATTCATATAGAGACTAAGAGGC 57.831 40.000 0.00 0.00 0.00 4.70
3155 3896 7.630513 GCATTCATATAGAGACTAAGAGGCCTC 60.631 44.444 26.22 26.22 0.00 4.70
3184 3925 8.212317 TCTTCGATTTCATTTTGATCATAGCA 57.788 30.769 0.00 0.00 0.00 3.49
3430 4171 9.420118 ACATATGGCAATACTTCATTTTTCCTA 57.580 29.630 7.80 0.00 0.00 2.94
3459 4200 8.740906 ACATAATGATATTCAGTACCTCGGTAG 58.259 37.037 0.00 0.00 29.22 3.18
3567 4311 4.374689 TGGGTAGACACTTGCCATTTTA 57.625 40.909 0.00 0.00 0.00 1.52
3817 4562 7.619512 AATGAGGTTTTTGGTTGGGTATAAA 57.380 32.000 0.00 0.00 0.00 1.40
3818 4563 7.619512 ATGAGGTTTTTGGTTGGGTATAAAA 57.380 32.000 0.00 0.00 0.00 1.52
3839 4584 0.610174 TGGGATCGGCTATCATGAGC 59.390 55.000 0.09 0.00 42.05 4.26
3844 4589 0.315251 TCGGCTATCATGAGCTTCCG 59.685 55.000 17.21 17.21 42.43 4.30
4025 4770 8.964476 TCATTGATCCTAGGAGTTATTGAAAC 57.036 34.615 18.34 0.00 0.00 2.78
4046 4791 3.575256 ACATCTCTTTTGAGCAATGGCAA 59.425 39.130 0.00 0.00 45.83 4.52
4048 4793 4.877378 TCTCTTTTGAGCAATGGCAATT 57.123 36.364 0.00 0.00 45.83 2.32
4191 4956 9.959749 TGGATTTATTTACAAACAACTTCACTC 57.040 29.630 0.00 0.00 0.00 3.51
4304 5070 9.915629 ATAAATTTTAGGTGTTTTTATGCGTGA 57.084 25.926 0.00 0.00 0.00 4.35
4373 5140 7.335924 CCCTCATTTAATTCCGACTTGTTTCTA 59.664 37.037 0.00 0.00 0.00 2.10
4424 5192 4.871557 TCGGATATGTTAACAACCCTTTCG 59.128 41.667 13.23 10.26 0.00 3.46
4442 5210 5.106830 CCTTTCGTTTTGGTACTTCGCTATT 60.107 40.000 0.00 0.00 0.00 1.73
4686 6758 5.341872 TGGTTGAAATATGCCTCCATTTG 57.658 39.130 0.00 0.00 32.85 2.32
4724 6796 5.243730 CACCCAGTAACCATTTTCAGTTCAT 59.756 40.000 0.00 0.00 0.00 2.57
4883 6955 8.432805 ACATCTTATATTTTGGTACAGAGGGAG 58.567 37.037 0.00 0.00 42.39 4.30
4941 7017 4.088648 CGCGTGTTTTTGAATGAGGATAC 58.911 43.478 0.00 0.00 0.00 2.24
5022 7102 5.545658 TTTAAGAGCACTGCTATTTTCCG 57.454 39.130 15.78 0.00 36.68 4.30
5062 7160 3.172229 ACGGGACCAACATTTTGTTTG 57.828 42.857 0.00 0.00 38.77 2.93
5067 7165 4.499183 GGACCAACATTTTGTTTGTGTCA 58.501 39.130 2.27 0.00 38.77 3.58
5068 7166 4.932200 GGACCAACATTTTGTTTGTGTCAA 59.068 37.500 2.27 0.00 38.77 3.18
5320 7418 3.052082 CTGCACTCCAAGTGGCCG 61.052 66.667 9.01 0.00 46.01 6.13
5345 7444 2.225963 CCCTCTGTACGTACGATCATCC 59.774 54.545 24.41 3.17 0.00 3.51
5348 7447 4.389382 CCTCTGTACGTACGATCATCCTAG 59.611 50.000 24.41 9.05 0.00 3.02
5349 7448 3.744942 TCTGTACGTACGATCATCCTAGC 59.255 47.826 24.41 0.07 0.00 3.42
5375 7474 1.134946 GCCACCATTGAATTTCTCGGG 59.865 52.381 0.00 0.00 0.00 5.14
5391 7490 3.741476 GGTAGGTGTCGGCGTCGT 61.741 66.667 10.18 3.53 37.69 4.34
5403 7502 1.219646 GGCGTCGTTTGGTTTCAGTA 58.780 50.000 0.00 0.00 0.00 2.74
5413 7512 5.634896 GTTTGGTTTCAGTAGCTGATGATG 58.365 41.667 0.00 0.00 40.39 3.07
5414 7513 4.558226 TGGTTTCAGTAGCTGATGATGT 57.442 40.909 0.00 0.00 40.39 3.06
5820 7920 4.003648 CCGCTCAATATTATGGTCCTTCC 58.996 47.826 0.00 0.00 0.00 3.46
5855 7955 1.651987 ATATCTGCCGTTCACGTTGG 58.348 50.000 0.00 0.00 37.74 3.77
5947 8053 2.507339 TCGACATCGATGCATGCTAA 57.493 45.000 25.11 0.00 44.22 3.09
5948 8054 2.397549 TCGACATCGATGCATGCTAAG 58.602 47.619 25.11 9.74 44.22 2.18
5949 8055 2.034558 TCGACATCGATGCATGCTAAGA 59.965 45.455 25.11 14.82 44.22 2.10
5950 8056 2.154580 CGACATCGATGCATGCTAAGAC 59.845 50.000 25.11 4.83 43.02 3.01
5951 8057 3.388308 GACATCGATGCATGCTAAGACT 58.612 45.455 25.11 0.58 0.00 3.24
5953 8059 1.575244 TCGATGCATGCTAAGACTGC 58.425 50.000 20.33 0.00 36.45 4.40
5954 8060 1.137675 TCGATGCATGCTAAGACTGCT 59.862 47.619 20.33 0.00 36.84 4.24
5955 8061 1.526041 CGATGCATGCTAAGACTGCTC 59.474 52.381 20.33 1.27 36.84 4.26
5956 8062 1.526041 GATGCATGCTAAGACTGCTCG 59.474 52.381 20.33 0.00 36.84 5.03
5958 8064 1.476488 TGCATGCTAAGACTGCTCGTA 59.524 47.619 20.33 0.00 36.84 3.43
5959 8065 2.094234 TGCATGCTAAGACTGCTCGTAA 60.094 45.455 20.33 0.00 36.84 3.18
5961 8067 4.202111 TGCATGCTAAGACTGCTCGTAATA 60.202 41.667 20.33 0.00 36.84 0.98
5962 8068 4.384247 GCATGCTAAGACTGCTCGTAATAG 59.616 45.833 11.37 0.00 33.15 1.73
5963 8069 5.524284 CATGCTAAGACTGCTCGTAATAGT 58.476 41.667 0.00 0.00 0.00 2.12
6042 8340 3.249320 GTGTACTGCATGCATCTACATGG 59.751 47.826 28.04 16.28 46.14 3.66
6097 8395 4.380531 TGGAGATGAACAAACTGTCTCAC 58.619 43.478 0.00 0.00 37.61 3.51
6169 8471 3.235437 CGGTACACGTACGCGCTG 61.235 66.667 16.72 9.09 42.83 5.18
6170 8472 2.126734 GGTACACGTACGCGCTGT 60.127 61.111 16.72 14.85 42.83 4.40
6171 8473 1.730547 GGTACACGTACGCGCTGTT 60.731 57.895 16.72 0.52 42.83 3.16
6227 8529 2.974148 CTGCTGAACAGTGCCGCA 60.974 61.111 0.00 0.00 41.86 5.69
6360 8667 1.226746 GGCAGCGGCGATTAACTAAT 58.773 50.000 12.98 0.00 42.47 1.73
6408 8715 4.668118 GGTTGCGGGTCGTCGGAA 62.668 66.667 0.00 0.00 38.09 4.30
6409 8716 3.110178 GTTGCGGGTCGTCGGAAG 61.110 66.667 0.00 0.00 40.82 3.46
6410 8717 4.367023 TTGCGGGTCGTCGGAAGG 62.367 66.667 0.00 0.00 35.67 3.46
6412 8719 4.493747 GCGGGTCGTCGGAAGGAG 62.494 72.222 0.00 0.00 0.00 3.69
6419 8726 2.110967 CGTCGGAAGGAGGCTCGTA 61.111 63.158 10.52 0.00 0.00 3.43
6441 8748 3.258372 ACTGCTTGCTAGTTGCTACTGTA 59.742 43.478 11.27 0.00 43.37 2.74
6498 8805 1.214062 CTGCGTCCTGTGTCCTCTC 59.786 63.158 0.00 0.00 0.00 3.20
6541 8848 1.856629 AGCATTTAACTGGCTGGCAT 58.143 45.000 3.74 0.00 36.34 4.40
6553 8860 1.505477 GCTGGCATGCTAGCTAGTGC 61.505 60.000 39.37 22.12 45.32 4.40
6556 8863 2.614581 GCATGCTAGCTAGTGCCTG 58.385 57.895 21.62 13.06 40.80 4.85
6557 8864 1.505477 GCATGCTAGCTAGTGCCTGC 61.505 60.000 21.62 18.32 41.75 4.85
6558 8865 0.106335 CATGCTAGCTAGTGCCTGCT 59.894 55.000 21.62 0.00 42.67 4.24
6559 8866 0.835941 ATGCTAGCTAGTGCCTGCTT 59.164 50.000 21.62 3.06 40.35 3.91
6560 8867 0.107993 TGCTAGCTAGTGCCTGCTTG 60.108 55.000 21.62 0.00 40.35 4.01
6561 8868 1.435408 GCTAGCTAGTGCCTGCTTGC 61.435 60.000 21.62 5.78 46.40 4.01
6562 8869 0.813210 CTAGCTAGTGCCTGCTTGCC 60.813 60.000 12.92 0.00 40.35 4.52
6563 8870 1.267574 TAGCTAGTGCCTGCTTGCCT 61.268 55.000 0.00 0.00 40.35 4.75
6564 8871 2.404995 GCTAGTGCCTGCTTGCCTG 61.405 63.158 0.00 0.00 32.53 4.85
6565 8872 1.748122 CTAGTGCCTGCTTGCCTGG 60.748 63.158 0.00 0.00 35.75 4.45
6566 8873 3.272364 TAGTGCCTGCTTGCCTGGG 62.272 63.158 0.00 0.00 33.42 4.45
6592 8899 3.602062 CGAAACATAATGGTCGCACAAAC 59.398 43.478 0.00 0.00 0.00 2.93
6593 8900 4.612712 CGAAACATAATGGTCGCACAAACT 60.613 41.667 0.00 0.00 0.00 2.66
6623 8930 3.009301 AGTTCACGAGGAAACGTACTG 57.991 47.619 0.00 0.00 44.76 2.74
6660 8967 1.027357 GAGTAAGTATGTCGCGGGGA 58.973 55.000 6.13 0.00 0.00 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.688487 ACTGGCCCGTAGCAGTTTTA 59.312 50.000 0.00 0.00 46.50 1.52
1 2 0.889186 CACTGGCCCGTAGCAGTTTT 60.889 55.000 0.00 0.00 46.50 2.43
23 24 2.118404 CCGCTCTCTCCTCGCTTCT 61.118 63.158 0.00 0.00 0.00 2.85
26 27 4.813235 AGCCGCTCTCTCCTCGCT 62.813 66.667 0.00 0.00 0.00 4.93
158 159 7.349412 ACCACTGTCTATCTAACTATCCAAC 57.651 40.000 0.00 0.00 0.00 3.77
188 189 4.500603 AGAACTTGTACTCTGGTGTACG 57.499 45.455 0.00 0.00 44.01 3.67
189 190 6.323203 TGTAGAACTTGTACTCTGGTGTAC 57.677 41.667 0.00 6.15 42.10 2.90
190 191 7.534723 AATGTAGAACTTGTACTCTGGTGTA 57.465 36.000 0.00 0.00 0.00 2.90
191 192 6.420913 AATGTAGAACTTGTACTCTGGTGT 57.579 37.500 0.00 0.00 0.00 4.16
201 203 8.796475 AGCATCAATGTTAAATGTAGAACTTGT 58.204 29.630 0.00 0.00 0.00 3.16
207 209 8.887036 ATACGAGCATCAATGTTAAATGTAGA 57.113 30.769 0.00 0.00 33.17 2.59
237 456 9.909644 GATTCCGTAAGTCTAGCATCTTTATAA 57.090 33.333 0.00 0.00 0.00 0.98
239 458 7.085116 CGATTCCGTAAGTCTAGCATCTTTAT 58.915 38.462 0.00 0.00 0.00 1.40
240 459 6.436261 CGATTCCGTAAGTCTAGCATCTTTA 58.564 40.000 0.00 0.00 0.00 1.85
242 461 4.793353 GCGATTCCGTAAGTCTAGCATCTT 60.793 45.833 0.00 0.00 38.24 2.40
246 465 1.268386 CGCGATTCCGTAAGTCTAGCA 60.268 52.381 0.00 0.00 38.24 3.49
247 466 1.268437 ACGCGATTCCGTAAGTCTAGC 60.268 52.381 15.93 0.00 40.08 3.42
248 467 2.223203 ACACGCGATTCCGTAAGTCTAG 60.223 50.000 15.93 0.00 39.83 2.43
264 502 4.933330 TCTCCAATCATAACTCTACACGC 58.067 43.478 0.00 0.00 0.00 5.34
279 517 5.606329 CCTCTCTTCCCTAATCTTCTCCAAT 59.394 44.000 0.00 0.00 0.00 3.16
297 536 3.944061 CCTCTGATGGGACCTCTCT 57.056 57.895 0.00 0.00 0.00 3.10
313 552 0.401395 TCTCTCACCAACCAACCCCT 60.401 55.000 0.00 0.00 0.00 4.79
333 583 8.120140 ACCTACGAATTAGTTTTACAGACTCT 57.880 34.615 0.00 0.00 0.00 3.24
352 602 7.272515 CCACAAAACAAAAATGCTATACCTACG 59.727 37.037 0.00 0.00 0.00 3.51
357 607 8.532977 ACATCCACAAAACAAAAATGCTATAC 57.467 30.769 0.00 0.00 0.00 1.47
359 609 9.723601 AATACATCCACAAAACAAAAATGCTAT 57.276 25.926 0.00 0.00 0.00 2.97
360 610 9.553064 AAATACATCCACAAAACAAAAATGCTA 57.447 25.926 0.00 0.00 0.00 3.49
361 611 8.449251 AAATACATCCACAAAACAAAAATGCT 57.551 26.923 0.00 0.00 0.00 3.79
362 612 8.341173 TGAAATACATCCACAAAACAAAAATGC 58.659 29.630 0.00 0.00 0.00 3.56
363 613 9.866936 CTGAAATACATCCACAAAACAAAAATG 57.133 29.630 0.00 0.00 0.00 2.32
364 614 9.612066 ACTGAAATACATCCACAAAACAAAAAT 57.388 25.926 0.00 0.00 0.00 1.82
390 654 2.095110 CGAATGCACATTGCCAGAAGAA 60.095 45.455 0.00 0.00 44.23 2.52
391 655 1.469703 CGAATGCACATTGCCAGAAGA 59.530 47.619 0.00 0.00 44.23 2.87
396 660 0.322366 TCTCCGAATGCACATTGCCA 60.322 50.000 0.00 0.00 44.23 4.92
400 664 2.002586 CGTCTTCTCCGAATGCACATT 58.997 47.619 0.00 0.00 0.00 2.71
406 670 2.363788 TGGAACGTCTTCTCCGAATG 57.636 50.000 0.00 0.00 34.14 2.67
407 671 2.479730 CGATGGAACGTCTTCTCCGAAT 60.480 50.000 0.00 0.00 34.14 3.34
410 674 0.450583 TCGATGGAACGTCTTCTCCG 59.549 55.000 0.00 0.00 34.14 4.63
411 675 1.473278 AGTCGATGGAACGTCTTCTCC 59.527 52.381 0.00 0.00 34.70 3.71
413 677 3.945921 TCATAGTCGATGGAACGTCTTCT 59.054 43.478 0.00 0.00 36.08 2.85
416 680 4.611943 CATTCATAGTCGATGGAACGTCT 58.388 43.478 0.00 0.00 36.08 4.18
417 681 3.182572 GCATTCATAGTCGATGGAACGTC 59.817 47.826 0.00 0.00 36.08 4.34
418 682 3.123804 GCATTCATAGTCGATGGAACGT 58.876 45.455 0.00 0.00 36.08 3.99
419 683 3.384668 AGCATTCATAGTCGATGGAACG 58.615 45.455 0.00 0.00 36.08 3.95
420 684 5.335827 GAAGCATTCATAGTCGATGGAAC 57.664 43.478 0.00 0.00 46.62 3.62
449 730 2.945008 TGAGCCGGCAAATCATCTTAAG 59.055 45.455 31.54 0.00 0.00 1.85
471 752 3.390639 CCCTATGAGCACCTCTGAAGAAT 59.609 47.826 0.00 0.00 0.00 2.40
474 755 2.392662 TCCCTATGAGCACCTCTGAAG 58.607 52.381 0.00 0.00 0.00 3.02
479 760 3.055530 CACCATATCCCTATGAGCACCTC 60.056 52.174 0.00 0.00 37.51 3.85
491 772 1.125633 ACGTACCCACACCATATCCC 58.874 55.000 0.00 0.00 0.00 3.85
497 778 1.302112 CATGCACGTACCCACACCA 60.302 57.895 0.00 0.00 0.00 4.17
512 793 8.492748 ACGTATAAACATTCCTATAAACGCATG 58.507 33.333 0.00 0.00 0.00 4.06
515 796 7.844482 ACACGTATAAACATTCCTATAAACGC 58.156 34.615 0.00 0.00 0.00 4.84
540 821 9.135843 GTATAAGCGCAAACACTCACATATATA 57.864 33.333 11.47 0.00 0.00 0.86
545 826 4.253685 AGTATAAGCGCAAACACTCACAT 58.746 39.130 11.47 0.00 0.00 3.21
547 828 5.291128 ACATAGTATAAGCGCAAACACTCAC 59.709 40.000 11.47 0.00 0.00 3.51
557 838 7.061634 CCGTTTTCTTAACATAGTATAAGCGC 58.938 38.462 0.00 0.00 0.00 5.92
558 839 8.123445 ACCGTTTTCTTAACATAGTATAAGCG 57.877 34.615 0.00 0.00 0.00 4.68
580 862 7.540745 AGCAACTTTAGCAAAACATAATAACCG 59.459 33.333 0.00 0.00 0.00 4.44
585 867 7.885297 TCAGAGCAACTTTAGCAAAACATAAT 58.115 30.769 0.00 0.00 0.00 1.28
588 870 5.532406 TCTCAGAGCAACTTTAGCAAAACAT 59.468 36.000 0.00 0.00 0.00 2.71
589 871 4.881273 TCTCAGAGCAACTTTAGCAAAACA 59.119 37.500 0.00 0.00 0.00 2.83
590 872 5.424121 TCTCAGAGCAACTTTAGCAAAAC 57.576 39.130 0.00 0.00 0.00 2.43
591 873 6.639632 ATTCTCAGAGCAACTTTAGCAAAA 57.360 33.333 0.00 0.00 0.00 2.44
678 1173 1.302192 GCCGCGGCCAAGGATATAA 60.302 57.895 39.89 0.00 34.56 0.98
731 1226 0.859232 TCTTTCTTGCGTCGCTGTTC 59.141 50.000 19.50 0.00 0.00 3.18
894 1395 4.408921 TGAAAAGAAGAGAAGTGGTGGAGA 59.591 41.667 0.00 0.00 0.00 3.71
923 1427 5.833131 ACTAGGAAGGAGATGAGATGAACTC 59.167 44.000 0.00 0.00 45.11 3.01
924 1428 5.776358 ACTAGGAAGGAGATGAGATGAACT 58.224 41.667 0.00 0.00 0.00 3.01
979 1486 1.429148 ATTTGCGCGGAGAATCGACC 61.429 55.000 8.83 0.00 34.37 4.79
990 1497 1.299541 ACCTCTCCATAATTTGCGCG 58.700 50.000 0.00 0.00 0.00 6.86
1044 1551 4.175489 GATGCACTGCTGCTGCCG 62.175 66.667 13.47 9.34 44.57 5.69
1045 1552 3.823330 GGATGCACTGCTGCTGCC 61.823 66.667 13.47 0.00 44.57 4.85
1059 1566 0.106318 GCAAGAAGGAGGCCATGGAT 60.106 55.000 18.40 1.89 0.00 3.41
1226 1733 3.247056 TTGGCCTTGATGGTCGCGA 62.247 57.895 3.71 3.71 45.26 5.87
1260 1767 2.517402 AGGAGCGGCGAGTAGAGG 60.517 66.667 12.98 0.00 0.00 3.69
1536 2043 5.078411 AGCTTGATCCATCGTATGTATCC 57.922 43.478 0.00 0.00 0.00 2.59
1577 2084 3.441572 ACAGGTACAGCAAAGCATCAATC 59.558 43.478 0.00 0.00 0.00 2.67
1578 2085 3.424703 ACAGGTACAGCAAAGCATCAAT 58.575 40.909 0.00 0.00 0.00 2.57
1579 2086 2.862541 ACAGGTACAGCAAAGCATCAA 58.137 42.857 0.00 0.00 0.00 2.57
1580 2087 2.566833 ACAGGTACAGCAAAGCATCA 57.433 45.000 0.00 0.00 0.00 3.07
1654 2161 0.539051 CCAGCTCCTCCCTGTACTTG 59.461 60.000 0.00 0.00 0.00 3.16
1760 2267 3.189080 CAGGCGCATAAATATTGCTGCTA 59.811 43.478 10.83 0.00 38.63 3.49
1915 2422 4.149598 AGTAAACAAAGGGGCAAAGGTAG 58.850 43.478 0.00 0.00 0.00 3.18
1916 2423 4.187506 AGTAAACAAAGGGGCAAAGGTA 57.812 40.909 0.00 0.00 0.00 3.08
1936 2443 3.512496 GGACCTTATCCCCTCCTCTAAG 58.488 54.545 0.00 0.00 42.46 2.18
1955 2462 3.072330 TGAACTTGTGGTCTAATGCAGGA 59.928 43.478 0.00 0.00 0.00 3.86
1957 2464 4.067896 AGTGAACTTGTGGTCTAATGCAG 58.932 43.478 0.00 0.00 0.00 4.41
2006 2513 2.423892 CTGCTGATGTGTACGTACTCCT 59.576 50.000 25.12 15.20 0.00 3.69
2081 2594 0.246635 CGGAGATTGGAACCACGAGT 59.753 55.000 0.00 0.00 0.00 4.18
2142 2655 2.806244 AGTGTGTTACTTCCAATCGTGC 59.194 45.455 0.00 0.00 35.67 5.34
2175 2688 5.580297 GCTGAACCAAAGATGAACTCTCTAG 59.420 44.000 0.00 0.00 31.03 2.43
2177 2690 4.202398 TGCTGAACCAAAGATGAACTCTCT 60.202 41.667 0.00 0.00 31.03 3.10
2178 2691 4.067896 TGCTGAACCAAAGATGAACTCTC 58.932 43.478 0.00 0.00 31.03 3.20
2239 2754 2.024176 TTGTGGCCCTAAGAGTGAGA 57.976 50.000 0.00 0.00 0.00 3.27
2243 2758 1.002087 CGACTTTGTGGCCCTAAGAGT 59.998 52.381 17.52 8.50 31.38 3.24
2273 2788 6.147581 CCACATAGATGATTAAACTGCATGC 58.852 40.000 11.82 11.82 0.00 4.06
2274 2789 7.268199 ACCACATAGATGATTAAACTGCATG 57.732 36.000 0.00 0.00 0.00 4.06
2275 2790 7.886629 AACCACATAGATGATTAAACTGCAT 57.113 32.000 0.00 0.00 0.00 3.96
2276 2791 7.701539 AAACCACATAGATGATTAAACTGCA 57.298 32.000 0.00 0.00 0.00 4.41
2305 2820 8.559536 TGAGTTCTAGCAAAACTGATTAAACAG 58.440 33.333 10.91 10.91 42.78 3.16
2307 2822 9.548208 GATGAGTTCTAGCAAAACTGATTAAAC 57.452 33.333 0.32 0.00 37.10 2.01
2308 2823 9.507329 AGATGAGTTCTAGCAAAACTGATTAAA 57.493 29.630 0.32 0.00 37.10 1.52
2310 2825 9.809096 CTAGATGAGTTCTAGCAAAACTGATTA 57.191 33.333 0.32 0.00 45.63 1.75
2311 2826 8.715191 CTAGATGAGTTCTAGCAAAACTGATT 57.285 34.615 0.32 0.00 45.63 2.57
2327 2842 9.303116 ACCAAATTATATCTCGTCTAGATGAGT 57.697 33.333 31.72 23.48 44.95 3.41
2328 2843 9.781834 GACCAAATTATATCTCGTCTAGATGAG 57.218 37.037 29.06 29.06 44.95 2.90
2329 2844 9.521841 AGACCAAATTATATCTCGTCTAGATGA 57.478 33.333 13.98 13.98 44.95 2.92
2330 2845 9.781834 GAGACCAAATTATATCTCGTCTAGATG 57.218 37.037 5.53 5.53 44.95 2.90
2331 2846 9.521841 TGAGACCAAATTATATCTCGTCTAGAT 57.478 33.333 0.00 0.00 46.95 1.98
2332 2847 8.919777 TGAGACCAAATTATATCTCGTCTAGA 57.080 34.615 0.00 0.00 40.45 2.43
2335 2850 8.642432 TGAATGAGACCAAATTATATCTCGTCT 58.358 33.333 7.55 0.00 40.45 4.18
2336 2851 8.818141 TGAATGAGACCAAATTATATCTCGTC 57.182 34.615 7.55 7.88 40.45 4.20
2337 2852 9.429359 GATGAATGAGACCAAATTATATCTCGT 57.571 33.333 7.76 5.44 40.45 4.18
2338 2853 9.650539 AGATGAATGAGACCAAATTATATCTCG 57.349 33.333 7.76 0.00 40.45 4.04
2347 2862 8.854117 GGCTATAAAAGATGAATGAGACCAAAT 58.146 33.333 0.00 0.00 0.00 2.32
2348 2863 7.833682 TGGCTATAAAAGATGAATGAGACCAAA 59.166 33.333 0.00 0.00 0.00 3.28
2349 2864 7.345691 TGGCTATAAAAGATGAATGAGACCAA 58.654 34.615 0.00 0.00 0.00 3.67
2350 2865 6.899089 TGGCTATAAAAGATGAATGAGACCA 58.101 36.000 0.00 0.00 0.00 4.02
2351 2866 7.992754 ATGGCTATAAAAGATGAATGAGACC 57.007 36.000 0.00 0.00 0.00 3.85
2352 2867 8.295288 CCAATGGCTATAAAAGATGAATGAGAC 58.705 37.037 0.00 0.00 0.00 3.36
2353 2868 8.219868 TCCAATGGCTATAAAAGATGAATGAGA 58.780 33.333 0.00 0.00 0.00 3.27
2354 2869 8.400184 TCCAATGGCTATAAAAGATGAATGAG 57.600 34.615 0.00 0.00 0.00 2.90
2355 2870 8.945195 ATCCAATGGCTATAAAAGATGAATGA 57.055 30.769 0.00 0.00 0.00 2.57
2361 2876 8.910944 GCATCATATCCAATGGCTATAAAAGAT 58.089 33.333 0.00 0.00 0.00 2.40
2362 2877 8.111545 AGCATCATATCCAATGGCTATAAAAGA 58.888 33.333 0.00 0.00 0.00 2.52
2363 2878 8.289939 AGCATCATATCCAATGGCTATAAAAG 57.710 34.615 0.00 0.00 0.00 2.27
2364 2879 9.925545 ATAGCATCATATCCAATGGCTATAAAA 57.074 29.630 0.00 0.00 0.00 1.52
2368 2883 8.942033 TCTTATAGCATCATATCCAATGGCTAT 58.058 33.333 0.00 0.00 32.32 2.97
2369 2884 8.322905 TCTTATAGCATCATATCCAATGGCTA 57.677 34.615 0.00 0.00 0.00 3.93
2370 2885 7.204243 TCTTATAGCATCATATCCAATGGCT 57.796 36.000 0.00 0.00 0.00 4.75
2371 2886 7.521748 GCATCTTATAGCATCATATCCAATGGC 60.522 40.741 0.00 0.00 0.00 4.40
2372 2887 7.307811 CGCATCTTATAGCATCATATCCAATGG 60.308 40.741 0.00 0.00 0.00 3.16
2373 2888 7.226128 ACGCATCTTATAGCATCATATCCAATG 59.774 37.037 0.00 0.00 0.00 2.82
2374 2889 7.226128 CACGCATCTTATAGCATCATATCCAAT 59.774 37.037 0.00 0.00 0.00 3.16
2375 2890 6.536224 CACGCATCTTATAGCATCATATCCAA 59.464 38.462 0.00 0.00 0.00 3.53
2376 2891 6.044682 CACGCATCTTATAGCATCATATCCA 58.955 40.000 0.00 0.00 0.00 3.41
2377 2892 6.045318 ACACGCATCTTATAGCATCATATCC 58.955 40.000 0.00 0.00 0.00 2.59
2378 2893 8.809159 ATACACGCATCTTATAGCATCATATC 57.191 34.615 0.00 0.00 0.00 1.63
2379 2894 9.684448 GTATACACGCATCTTATAGCATCATAT 57.316 33.333 0.00 0.00 0.00 1.78
2380 2895 8.903820 AGTATACACGCATCTTATAGCATCATA 58.096 33.333 5.50 0.00 0.00 2.15
2381 2896 7.704047 CAGTATACACGCATCTTATAGCATCAT 59.296 37.037 5.50 0.00 0.00 2.45
2382 2897 7.029563 CAGTATACACGCATCTTATAGCATCA 58.970 38.462 5.50 0.00 0.00 3.07
2383 2898 7.219154 GTCAGTATACACGCATCTTATAGCATC 59.781 40.741 5.50 0.00 0.00 3.91
2384 2899 7.030165 GTCAGTATACACGCATCTTATAGCAT 58.970 38.462 5.50 0.00 0.00 3.79
2385 2900 6.379386 GTCAGTATACACGCATCTTATAGCA 58.621 40.000 5.50 0.00 0.00 3.49
2386 2901 5.508573 CGTCAGTATACACGCATCTTATAGC 59.491 44.000 5.50 0.00 0.00 2.97
2387 2902 6.600350 ACGTCAGTATACACGCATCTTATAG 58.400 40.000 13.84 0.00 39.73 1.31
2388 2903 6.549912 ACGTCAGTATACACGCATCTTATA 57.450 37.500 13.84 0.00 39.73 0.98
2389 2904 5.434352 ACGTCAGTATACACGCATCTTAT 57.566 39.130 13.84 0.00 39.73 1.73
2390 2905 4.888038 ACGTCAGTATACACGCATCTTA 57.112 40.909 13.84 0.00 39.73 2.10
2391 2906 3.777465 ACGTCAGTATACACGCATCTT 57.223 42.857 13.84 0.00 39.73 2.40
2392 2907 3.250280 CCTACGTCAGTATACACGCATCT 59.750 47.826 13.84 0.32 39.73 2.90
2393 2908 3.003068 ACCTACGTCAGTATACACGCATC 59.997 47.826 13.84 0.00 39.73 3.91
2394 2909 2.947652 ACCTACGTCAGTATACACGCAT 59.052 45.455 13.84 1.21 39.73 4.73
2395 2910 2.358957 ACCTACGTCAGTATACACGCA 58.641 47.619 13.84 2.80 39.73 5.24
2396 2911 3.103738 CAACCTACGTCAGTATACACGC 58.896 50.000 13.84 0.00 39.73 5.34
2397 2912 4.346734 ACAACCTACGTCAGTATACACG 57.653 45.455 12.68 12.68 41.90 4.49
2398 2913 7.130917 CAGATACAACCTACGTCAGTATACAC 58.869 42.308 5.50 0.00 31.58 2.90
2399 2914 6.825213 ACAGATACAACCTACGTCAGTATACA 59.175 38.462 5.50 0.00 31.58 2.29
2400 2915 7.256756 ACAGATACAACCTACGTCAGTATAC 57.743 40.000 0.00 0.00 31.58 1.47
2401 2916 7.870509 AACAGATACAACCTACGTCAGTATA 57.129 36.000 0.00 0.00 31.58 1.47
2402 2917 6.770746 AACAGATACAACCTACGTCAGTAT 57.229 37.500 0.00 0.00 31.58 2.12
2403 2918 6.579666 AAACAGATACAACCTACGTCAGTA 57.420 37.500 0.00 0.00 0.00 2.74
2404 2919 5.464030 AAACAGATACAACCTACGTCAGT 57.536 39.130 0.00 0.00 0.00 3.41
2405 2920 6.202188 ACAAAAACAGATACAACCTACGTCAG 59.798 38.462 0.00 0.00 0.00 3.51
2406 2921 6.050432 ACAAAAACAGATACAACCTACGTCA 58.950 36.000 0.00 0.00 0.00 4.35
2407 2922 6.535274 ACAAAAACAGATACAACCTACGTC 57.465 37.500 0.00 0.00 0.00 4.34
2408 2923 6.930667 AACAAAAACAGATACAACCTACGT 57.069 33.333 0.00 0.00 0.00 3.57
2409 2924 7.911205 TGAAAACAAAAACAGATACAACCTACG 59.089 33.333 0.00 0.00 0.00 3.51
2410 2925 9.575783 TTGAAAACAAAAACAGATACAACCTAC 57.424 29.630 0.00 0.00 0.00 3.18
2411 2926 9.796120 CTTGAAAACAAAAACAGATACAACCTA 57.204 29.630 0.00 0.00 0.00 3.08
2412 2927 7.763985 CCTTGAAAACAAAAACAGATACAACCT 59.236 33.333 0.00 0.00 0.00 3.50
2413 2928 7.547722 ACCTTGAAAACAAAAACAGATACAACC 59.452 33.333 0.00 0.00 0.00 3.77
2414 2929 8.379902 CACCTTGAAAACAAAAACAGATACAAC 58.620 33.333 0.00 0.00 0.00 3.32
2415 2930 8.307483 TCACCTTGAAAACAAAAACAGATACAA 58.693 29.630 0.00 0.00 0.00 2.41
2416 2931 7.831753 TCACCTTGAAAACAAAAACAGATACA 58.168 30.769 0.00 0.00 0.00 2.29
2417 2932 8.696410 TTCACCTTGAAAACAAAAACAGATAC 57.304 30.769 0.00 0.00 32.71 2.24
2418 2933 9.311916 CATTCACCTTGAAAACAAAAACAGATA 57.688 29.630 0.00 0.00 40.12 1.98
2419 2934 8.040132 TCATTCACCTTGAAAACAAAAACAGAT 58.960 29.630 0.00 0.00 40.12 2.90
2420 2935 7.382110 TCATTCACCTTGAAAACAAAAACAGA 58.618 30.769 0.00 0.00 40.12 3.41
2421 2936 7.545265 TCTCATTCACCTTGAAAACAAAAACAG 59.455 33.333 0.00 0.00 40.12 3.16
2422 2937 7.330700 GTCTCATTCACCTTGAAAACAAAAACA 59.669 33.333 0.00 0.00 40.12 2.83
2423 2938 7.201522 GGTCTCATTCACCTTGAAAACAAAAAC 60.202 37.037 0.00 0.00 40.12 2.43
2424 2939 6.816140 GGTCTCATTCACCTTGAAAACAAAAA 59.184 34.615 0.00 0.00 40.12 1.94
2425 2940 6.071108 TGGTCTCATTCACCTTGAAAACAAAA 60.071 34.615 0.00 0.00 40.12 2.44
2426 2941 5.420421 TGGTCTCATTCACCTTGAAAACAAA 59.580 36.000 0.00 0.00 40.12 2.83
2427 2942 4.952957 TGGTCTCATTCACCTTGAAAACAA 59.047 37.500 0.00 0.00 40.12 2.83
2428 2943 4.531854 TGGTCTCATTCACCTTGAAAACA 58.468 39.130 0.00 0.00 40.12 2.83
2429 2944 5.514274 TTGGTCTCATTCACCTTGAAAAC 57.486 39.130 0.00 0.00 40.12 2.43
2430 2945 6.729690 ATTTGGTCTCATTCACCTTGAAAA 57.270 33.333 0.00 0.00 40.12 2.29
2431 2946 6.729690 AATTTGGTCTCATTCACCTTGAAA 57.270 33.333 0.00 0.00 40.12 2.69
2432 2947 9.699410 ATATAATTTGGTCTCATTCACCTTGAA 57.301 29.630 0.00 0.00 41.09 2.69
2433 2948 9.342308 GATATAATTTGGTCTCATTCACCTTGA 57.658 33.333 0.00 0.00 34.66 3.02
2434 2949 9.347240 AGATATAATTTGGTCTCATTCACCTTG 57.653 33.333 0.00 0.00 34.66 3.61
2435 2950 9.566432 GAGATATAATTTGGTCTCATTCACCTT 57.434 33.333 8.11 0.00 37.60 3.50
2436 2951 8.717717 TGAGATATAATTTGGTCTCATTCACCT 58.282 33.333 10.50 0.00 41.40 4.00
2437 2952 8.908786 TGAGATATAATTTGGTCTCATTCACC 57.091 34.615 10.50 0.00 41.40 4.02
2460 2975 6.183360 GGAGTGCCTAGAACTCATTTAGATGA 60.183 42.308 20.54 0.00 44.86 2.92
2461 2976 5.988561 GGAGTGCCTAGAACTCATTTAGATG 59.011 44.000 20.54 0.00 44.86 2.90
2462 2977 5.071115 GGGAGTGCCTAGAACTCATTTAGAT 59.929 44.000 20.54 0.00 44.86 1.98
2463 2978 4.406003 GGGAGTGCCTAGAACTCATTTAGA 59.594 45.833 20.54 0.00 44.86 2.10
2464 2979 4.443598 GGGGAGTGCCTAGAACTCATTTAG 60.444 50.000 20.54 0.00 44.86 1.85
2465 2980 3.454812 GGGGAGTGCCTAGAACTCATTTA 59.545 47.826 20.54 0.00 44.86 1.40
2466 2981 2.239907 GGGGAGTGCCTAGAACTCATTT 59.760 50.000 20.54 0.00 44.86 2.32
2467 2982 1.840635 GGGGAGTGCCTAGAACTCATT 59.159 52.381 20.54 0.25 44.86 2.57
2468 2983 1.008938 AGGGGAGTGCCTAGAACTCAT 59.991 52.381 20.54 8.60 44.86 2.90
2469 2984 0.413832 AGGGGAGTGCCTAGAACTCA 59.586 55.000 20.54 0.39 44.86 3.41
2470 2985 0.827368 CAGGGGAGTGCCTAGAACTC 59.173 60.000 14.10 14.10 42.79 3.01
2471 2986 0.117340 ACAGGGGAGTGCCTAGAACT 59.883 55.000 0.00 0.00 0.00 3.01
2472 2987 0.984995 AACAGGGGAGTGCCTAGAAC 59.015 55.000 0.00 0.00 0.00 3.01
2473 2988 1.742308 AAACAGGGGAGTGCCTAGAA 58.258 50.000 0.00 0.00 0.00 2.10
2474 2989 2.634639 TAAACAGGGGAGTGCCTAGA 57.365 50.000 0.00 0.00 0.00 2.43
2475 2990 3.199946 TGATTAAACAGGGGAGTGCCTAG 59.800 47.826 0.00 0.00 0.00 3.02
2476 2991 3.186283 TGATTAAACAGGGGAGTGCCTA 58.814 45.455 0.00 0.00 0.00 3.93
2477 2992 1.992557 TGATTAAACAGGGGAGTGCCT 59.007 47.619 0.00 0.00 0.00 4.75
2478 2993 2.369394 CTGATTAAACAGGGGAGTGCC 58.631 52.381 4.87 0.00 34.64 5.01
2479 2994 1.745653 GCTGATTAAACAGGGGAGTGC 59.254 52.381 13.90 0.00 38.22 4.40
2480 2995 3.356529 AGCTGATTAAACAGGGGAGTG 57.643 47.619 13.90 0.00 38.22 3.51
2481 2996 3.118223 GCTAGCTGATTAAACAGGGGAGT 60.118 47.826 13.90 0.00 38.22 3.85
2482 2997 3.118261 TGCTAGCTGATTAAACAGGGGAG 60.118 47.826 17.23 0.00 38.22 4.30
2483 2998 2.843730 TGCTAGCTGATTAAACAGGGGA 59.156 45.455 17.23 0.00 38.22 4.81
2484 2999 2.945668 GTGCTAGCTGATTAAACAGGGG 59.054 50.000 17.23 0.00 38.22 4.79
2485 3000 2.609459 CGTGCTAGCTGATTAAACAGGG 59.391 50.000 17.23 0.00 38.22 4.45
2486 3001 3.521560 TCGTGCTAGCTGATTAAACAGG 58.478 45.455 17.23 0.00 38.22 4.00
2564 3079 3.865446 ACAAGGCCGGTTGTTAGTATAC 58.135 45.455 1.90 0.00 37.36 1.47
2598 3114 5.593909 TGCATCCCAATTAAATCACTACTGG 59.406 40.000 0.00 0.00 0.00 4.00
2623 3139 3.510360 TCAGCTAGTACCCTGTGTTCTTC 59.490 47.826 0.00 0.00 0.00 2.87
2624 3140 3.507411 TCAGCTAGTACCCTGTGTTCTT 58.493 45.455 0.00 0.00 0.00 2.52
2625 3141 3.170991 TCAGCTAGTACCCTGTGTTCT 57.829 47.619 0.00 0.00 0.00 3.01
2923 3490 4.152045 CAGTGAAAAGCTTGTGCAAACAAA 59.848 37.500 0.00 0.00 42.74 2.83
2949 3516 6.016777 AGTCAGTTTTCATTTCTTCAGCGAAT 60.017 34.615 0.00 0.00 0.00 3.34
2952 3530 5.100751 AGTCAGTTTTCATTTCTTCAGCG 57.899 39.130 0.00 0.00 0.00 5.18
2995 3577 6.646240 GGTGATTTTGTGTTCTGTGCAATATT 59.354 34.615 0.00 0.00 0.00 1.28
2998 3580 4.099881 AGGTGATTTTGTGTTCTGTGCAAT 59.900 37.500 0.00 0.00 0.00 3.56
3038 3620 9.595823 AAGTAGTACTGCATAACGATTAACATT 57.404 29.630 13.75 0.00 0.00 2.71
3056 3638 8.429493 ACAGTTCCTAAACAAACAAGTAGTAC 57.571 34.615 0.00 0.00 37.88 2.73
3142 3875 4.116238 CGAAGAAATGAGGCCTCTTAGTC 58.884 47.826 32.28 23.91 29.59 2.59
3144 3877 4.392921 TCGAAGAAATGAGGCCTCTTAG 57.607 45.455 32.28 17.91 29.59 2.18
3145 3878 5.359194 AATCGAAGAAATGAGGCCTCTTA 57.641 39.130 32.28 15.01 43.58 2.10
3146 3879 3.922171 ATCGAAGAAATGAGGCCTCTT 57.078 42.857 32.28 24.06 43.58 2.85
3148 3881 3.941483 TGAAATCGAAGAAATGAGGCCTC 59.059 43.478 26.78 26.78 43.58 4.70
3150 3883 4.907879 ATGAAATCGAAGAAATGAGGCC 57.092 40.909 0.00 0.00 43.58 5.19
3151 3884 6.808212 TCAAAATGAAATCGAAGAAATGAGGC 59.192 34.615 0.00 0.00 43.58 4.70
3152 3885 8.922058 ATCAAAATGAAATCGAAGAAATGAGG 57.078 30.769 0.00 0.00 43.58 3.86
3184 3925 8.253113 CCTCAAACCAATTAACAATGCTCTATT 58.747 33.333 0.00 0.00 0.00 1.73
3430 4171 7.872993 CCGAGGTACTGAATATCATTATGTGTT 59.127 37.037 0.00 0.00 41.55 3.32
3797 4541 7.227873 CCATTTTTATACCCAACCAAAAACCT 58.772 34.615 0.00 0.00 33.93 3.50
3817 4562 3.871463 GCTCATGATAGCCGATCCCATTT 60.871 47.826 0.00 0.00 36.45 2.32
3818 4563 2.355513 GCTCATGATAGCCGATCCCATT 60.356 50.000 0.00 0.00 36.45 3.16
3839 4584 9.331282 AGGAAATTGAGAAACTATATTCGGAAG 57.669 33.333 0.00 0.00 34.46 3.46
4025 4770 3.861276 TGCCATTGCTCAAAAGAGATG 57.139 42.857 0.00 0.00 38.71 2.90
4048 4793 8.561212 ACACAGCGTACTAAATCAAACAAAATA 58.439 29.630 0.00 0.00 0.00 1.40
4191 4956 5.163794 ACTGCCCGTTTTCTTTATGTTATCG 60.164 40.000 0.00 0.00 0.00 2.92
4304 5070 8.389603 CAACATGAACAAATAAAGTGCAGTTTT 58.610 29.630 23.82 12.42 0.00 2.43
4373 5140 8.738645 ATCTGTTAGAACAAGTGAGAAAAACT 57.261 30.769 0.00 0.00 38.66 2.66
4424 5192 7.535489 AGTATGAATAGCGAAGTACCAAAAC 57.465 36.000 0.00 0.00 0.00 2.43
4442 5210 9.349713 AGGTTGTGTTAATTTTCTCAAGTATGA 57.650 29.630 0.00 0.00 0.00 2.15
4686 6758 3.744660 ACTGGGTGAAGATCAGAACAAC 58.255 45.455 0.00 0.00 33.19 3.32
4910 6982 0.666374 AAAAACACGCGGAAAGGAGG 59.334 50.000 12.47 0.00 0.00 4.30
4941 7017 2.237066 TGTGTTCGTGCGTGCAGAG 61.237 57.895 0.00 0.00 0.00 3.35
4948 7024 0.375454 TCAAAAGGTGTGTTCGTGCG 59.625 50.000 0.00 0.00 0.00 5.34
5062 7160 3.820689 TGCGCATCAATAGTTTTGACAC 58.179 40.909 5.66 0.00 0.00 3.67
5067 7165 3.753272 ACTGTCTGCGCATCAATAGTTTT 59.247 39.130 12.24 0.00 0.00 2.43
5068 7166 3.338249 ACTGTCTGCGCATCAATAGTTT 58.662 40.909 12.24 0.00 0.00 2.66
5320 7418 2.024176 TCGTACGTACAGAGGGGTAC 57.976 55.000 24.50 0.00 40.14 3.34
5345 7444 3.198409 TCAATGGTGGCATGTAGCTAG 57.802 47.619 0.00 0.00 44.79 3.42
5348 7447 3.806625 AATTCAATGGTGGCATGTAGC 57.193 42.857 0.00 0.00 44.65 3.58
5349 7448 5.585390 GAGAAATTCAATGGTGGCATGTAG 58.415 41.667 0.00 0.00 0.00 2.74
5375 7474 1.372128 AAACGACGCCGACACCTAC 60.372 57.895 0.00 0.00 39.50 3.18
5391 7490 5.316167 ACATCATCAGCTACTGAAACCAAA 58.684 37.500 0.74 0.00 44.04 3.28
5403 7502 1.615116 CCACCACCAACATCATCAGCT 60.615 52.381 0.00 0.00 0.00 4.24
5413 7512 1.202114 CACATATGCACCACCACCAAC 59.798 52.381 1.58 0.00 0.00 3.77
5414 7513 1.543607 CACATATGCACCACCACCAA 58.456 50.000 1.58 0.00 0.00 3.67
5578 7678 2.435059 GAGGAAGCTGACGCCCAC 60.435 66.667 0.00 0.00 36.60 4.61
5579 7679 3.706373 GGAGGAAGCTGACGCCCA 61.706 66.667 0.00 0.00 36.60 5.36
5580 7680 4.475135 GGGAGGAAGCTGACGCCC 62.475 72.222 12.78 12.78 36.60 6.13
5771 7871 4.452114 TCGTCAGACTAAGTACGTTAAGCA 59.548 41.667 0.00 0.00 36.73 3.91
5772 7872 4.785561 GTCGTCAGACTAAGTACGTTAAGC 59.214 45.833 0.00 0.00 43.80 3.09
5773 7873 5.011991 CGTCGTCAGACTAAGTACGTTAAG 58.988 45.833 0.00 0.00 44.93 1.85
5774 7874 4.684242 TCGTCGTCAGACTAAGTACGTTAA 59.316 41.667 0.00 0.00 44.93 2.01
5820 7920 8.350722 ACGGCAGATATATATGGAGTATTTACG 58.649 37.037 9.31 0.00 0.00 3.18
5855 7955 3.402628 TTCCTACTTGGCAGACTTGTC 57.597 47.619 0.00 0.00 35.26 3.18
5945 8051 5.122869 ACAACGACTATTACGAGCAGTCTTA 59.877 40.000 0.00 0.00 37.20 2.10
5946 8052 4.082895 ACAACGACTATTACGAGCAGTCTT 60.083 41.667 0.00 0.00 37.20 3.01
5947 8053 3.439476 ACAACGACTATTACGAGCAGTCT 59.561 43.478 0.00 0.00 37.20 3.24
5948 8054 3.756069 ACAACGACTATTACGAGCAGTC 58.244 45.455 0.00 0.00 36.23 3.51
5949 8055 3.844577 ACAACGACTATTACGAGCAGT 57.155 42.857 0.00 0.00 34.70 4.40
5950 8056 4.619760 TGAAACAACGACTATTACGAGCAG 59.380 41.667 0.00 0.00 34.70 4.24
5951 8057 4.548494 TGAAACAACGACTATTACGAGCA 58.452 39.130 0.00 0.00 34.70 4.26
5953 8059 4.619760 TGCTGAAACAACGACTATTACGAG 59.380 41.667 0.00 0.00 34.70 4.18
5954 8060 4.383649 GTGCTGAAACAACGACTATTACGA 59.616 41.667 0.00 0.00 34.70 3.43
5955 8061 4.384846 AGTGCTGAAACAACGACTATTACG 59.615 41.667 0.00 0.00 0.00 3.18
5956 8062 5.840940 AGTGCTGAAACAACGACTATTAC 57.159 39.130 0.00 0.00 0.00 1.89
5958 8064 5.405571 CACTAGTGCTGAAACAACGACTATT 59.594 40.000 10.54 0.00 0.00 1.73
5959 8065 4.923871 CACTAGTGCTGAAACAACGACTAT 59.076 41.667 10.54 0.00 0.00 2.12
5961 8067 3.123804 CACTAGTGCTGAAACAACGACT 58.876 45.455 10.54 0.00 0.00 4.18
5962 8068 3.505449 CACTAGTGCTGAAACAACGAC 57.495 47.619 10.54 0.00 0.00 4.34
6042 8340 2.048444 TGATGATGAAAGGAGCCAGC 57.952 50.000 0.00 0.00 0.00 4.85
6097 8395 1.759881 GATCTCAGGGGCCCATCAG 59.240 63.158 27.72 14.31 0.00 2.90
6131 8433 1.798223 TGTAGCAAGCACACGTTGATC 59.202 47.619 0.00 0.00 0.00 2.92
6166 8468 3.957535 AGCACGCACAGCAACAGC 61.958 61.111 0.00 0.00 0.00 4.40
6167 8469 2.051614 CAGCACGCACAGCAACAG 60.052 61.111 0.00 0.00 0.00 3.16
6168 8470 2.405805 AACAGCACGCACAGCAACA 61.406 52.632 0.00 0.00 0.00 3.33
6169 8471 1.940758 CAACAGCACGCACAGCAAC 60.941 57.895 0.00 0.00 0.00 4.17
6170 8472 2.408428 CAACAGCACGCACAGCAA 59.592 55.556 0.00 0.00 0.00 3.91
6171 8473 4.254672 GCAACAGCACGCACAGCA 62.255 61.111 0.00 0.00 0.00 4.41
6227 8529 2.359011 GGATCCGGGGCCTGTTTT 59.641 61.111 12.30 0.00 0.00 2.43
6396 8703 3.823330 CCTCCTTCCGACGACCCG 61.823 72.222 0.00 0.00 0.00 5.28
6408 8715 1.893786 CAAGCAGTACGAGCCTCCT 59.106 57.895 9.32 0.00 0.00 3.69
6409 8716 1.811679 GCAAGCAGTACGAGCCTCC 60.812 63.158 9.32 0.00 0.00 4.30
6410 8717 0.456221 TAGCAAGCAGTACGAGCCTC 59.544 55.000 9.32 0.00 0.00 4.70
6411 8718 0.457851 CTAGCAAGCAGTACGAGCCT 59.542 55.000 9.32 3.59 0.00 4.58
6412 8719 0.173708 ACTAGCAAGCAGTACGAGCC 59.826 55.000 9.32 0.00 0.00 4.70
6478 8785 3.302347 GAGGACACAGGACGCAGGG 62.302 68.421 0.00 0.00 0.00 4.45
6479 8786 2.219325 GAGAGGACACAGGACGCAGG 62.219 65.000 0.00 0.00 0.00 4.85
6480 8787 1.214062 GAGAGGACACAGGACGCAG 59.786 63.158 0.00 0.00 0.00 5.18
6481 8788 1.228583 AGAGAGGACACAGGACGCA 60.229 57.895 0.00 0.00 0.00 5.24
6482 8789 1.214062 CAGAGAGGACACAGGACGC 59.786 63.158 0.00 0.00 0.00 5.19
6483 8790 0.242286 CACAGAGAGGACACAGGACG 59.758 60.000 0.00 0.00 0.00 4.79
6498 8805 1.143305 CTCCAACTTCGCTGTCACAG 58.857 55.000 0.00 0.00 34.12 3.66
6541 8848 0.107993 CAAGCAGGCACTAGCTAGCA 60.108 55.000 20.91 1.89 40.72 3.49
6553 8860 2.123982 GATCCCCAGGCAAGCAGG 60.124 66.667 0.00 0.00 0.00 4.85
6554 8861 2.515523 CGATCCCCAGGCAAGCAG 60.516 66.667 0.00 0.00 0.00 4.24
6555 8862 2.135903 TTTCGATCCCCAGGCAAGCA 62.136 55.000 0.00 0.00 0.00 3.91
6556 8863 1.378514 TTTCGATCCCCAGGCAAGC 60.379 57.895 0.00 0.00 0.00 4.01
6557 8864 0.322456 TGTTTCGATCCCCAGGCAAG 60.322 55.000 0.00 0.00 0.00 4.01
6558 8865 0.331278 ATGTTTCGATCCCCAGGCAA 59.669 50.000 0.00 0.00 0.00 4.52
6559 8866 1.208706 TATGTTTCGATCCCCAGGCA 58.791 50.000 0.00 0.00 0.00 4.75
6560 8867 2.341846 TTATGTTTCGATCCCCAGGC 57.658 50.000 0.00 0.00 0.00 4.85
6561 8868 3.149196 CCATTATGTTTCGATCCCCAGG 58.851 50.000 0.00 0.00 0.00 4.45
6562 8869 3.815401 GACCATTATGTTTCGATCCCCAG 59.185 47.826 0.00 0.00 0.00 4.45
6563 8870 3.742954 CGACCATTATGTTTCGATCCCCA 60.743 47.826 7.44 0.00 33.20 4.96
6564 8871 2.806244 CGACCATTATGTTTCGATCCCC 59.194 50.000 7.44 0.00 33.20 4.81
6565 8872 2.223377 GCGACCATTATGTTTCGATCCC 59.777 50.000 14.89 0.00 33.20 3.85
6566 8873 2.869801 TGCGACCATTATGTTTCGATCC 59.130 45.455 14.89 1.85 33.20 3.36
6567 8874 3.308595 TGTGCGACCATTATGTTTCGATC 59.691 43.478 14.89 8.54 33.20 3.69
6568 8875 3.266636 TGTGCGACCATTATGTTTCGAT 58.733 40.909 14.89 0.00 33.20 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.