Multiple sequence alignment - TraesCS5D01G415400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G415400 chr5D 100.000 4787 0 0 1 4787 477828520 477833306 0.000000e+00 8841
1 TraesCS5D01G415400 chr5B 92.007 4141 176 62 408 4448 585043897 585047982 0.000000e+00 5670
2 TraesCS5D01G415400 chr5A 93.100 913 53 8 3635 4544 596664080 596664985 0.000000e+00 1328
3 TraesCS5D01G415400 chr5A 88.034 936 62 28 408 1312 596659830 596660746 0.000000e+00 1062
4 TraesCS5D01G415400 chr5A 87.268 754 86 4 1709 2452 596661076 596661829 0.000000e+00 852
5 TraesCS5D01G415400 chr5A 83.220 590 74 15 3028 3605 596663194 596663770 7.100000e-143 518
6 TraesCS5D01G415400 chr5A 80.335 239 14 9 4533 4748 596665049 596665277 2.980000e-32 150
7 TraesCS5D01G415400 chr1B 88.452 407 44 3 1 407 110615511 110615914 5.570000e-134 488
8 TraesCS5D01G415400 chr4D 86.520 408 54 1 1 407 419455613 419456020 9.450000e-122 448
9 TraesCS5D01G415400 chr6A 82.282 412 55 4 1 407 214433058 214433456 1.650000e-89 340


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G415400 chr5D 477828520 477833306 4786 False 8841 8841 100.0000 1 4787 1 chr5D.!!$F1 4786
1 TraesCS5D01G415400 chr5B 585043897 585047982 4085 False 5670 5670 92.0070 408 4448 1 chr5B.!!$F1 4040
2 TraesCS5D01G415400 chr5A 596659830 596665277 5447 False 782 1328 86.3914 408 4748 5 chr5A.!!$F1 4340

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.032952 TCGAGGTGGTACTTGTGCAC 59.967 55.000 10.75 10.75 0.00 4.57 F
104 105 0.033504 CGAGGTGGTACTTGTGCACT 59.966 55.000 19.41 0.00 0.00 4.40 F
182 183 0.036388 AAGAAATTCGCGGCCTCTGA 60.036 50.000 6.13 0.00 0.00 3.27 F
250 251 0.174845 TTCATCGTAGCAGAACGGGG 59.825 55.000 6.45 0.73 43.05 5.73 F
369 370 0.178990 AGGCTCCAACAACAACCTCC 60.179 55.000 0.00 0.00 0.00 4.30 F
372 373 0.539669 CTCCAACAACAACCTCCCCC 60.540 60.000 0.00 0.00 0.00 5.40 F
1078 1110 0.605589 AGAACTCCAGGAGCACTTCG 59.394 55.000 17.31 0.00 32.04 3.79 F
1330 1371 1.403249 GCTTTGCGATTGAATGTGGCT 60.403 47.619 0.00 0.00 0.00 4.75 F
2743 3006 0.601046 CACTCGCTGAAGGCTTGACA 60.601 55.000 3.46 0.00 39.13 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1053 1085 0.980423 GCTCCTGGAGTTCTTCCTGT 59.020 55.000 23.92 0.00 46.92 4.00 R
1536 1640 5.857822 AGGAACGTATTTCTTTGTACAGC 57.142 39.130 0.00 0.00 34.26 4.40 R
1626 1730 5.930837 AAAATCAGTGGAACCTTTTGTCA 57.069 34.783 0.00 0.00 37.80 3.58 R
2144 2295 7.329471 CCCATATCATAGGATTATATTGTCGCG 59.671 40.741 0.00 0.00 34.89 5.87 R
2355 2515 6.452242 TGTATTCACGTGATCATACCCATAC 58.548 40.000 26.31 22.67 0.00 2.39 R
2370 2530 4.087930 GCACCAAAACGATTTGTATTCACG 59.912 41.667 15.81 2.81 43.59 4.35 R
2441 2601 2.224548 GGTAGGTCCACTTGTTGCTCTT 60.225 50.000 0.00 0.00 35.97 2.85 R
3285 4364 2.819608 AGCAGTTTCAATACGGCAACAT 59.180 40.909 0.00 0.00 40.94 2.71 R
4075 5444 0.239347 GCGCATGAAGCTCACAAACT 59.761 50.000 0.30 0.00 42.61 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.911143 CCCATGGGAGTCGGAAGG 59.089 66.667 28.27 0.00 37.50 3.46
29 30 1.689233 CCCATGGGAGTCGGAAGGA 60.689 63.158 28.27 0.00 37.50 3.36
30 31 1.271840 CCCATGGGAGTCGGAAGGAA 61.272 60.000 28.27 0.00 37.50 3.36
31 32 0.107654 CCATGGGAGTCGGAAGGAAC 60.108 60.000 2.85 0.00 0.00 3.62
32 33 0.613260 CATGGGAGTCGGAAGGAACA 59.387 55.000 0.00 0.00 0.00 3.18
33 34 1.003118 CATGGGAGTCGGAAGGAACAA 59.997 52.381 0.00 0.00 0.00 2.83
34 35 0.395312 TGGGAGTCGGAAGGAACAAC 59.605 55.000 0.00 0.00 0.00 3.32
35 36 0.395312 GGGAGTCGGAAGGAACAACA 59.605 55.000 0.00 0.00 0.00 3.33
36 37 1.202722 GGGAGTCGGAAGGAACAACAA 60.203 52.381 0.00 0.00 0.00 2.83
37 38 2.143925 GGAGTCGGAAGGAACAACAAG 58.856 52.381 0.00 0.00 0.00 3.16
38 39 2.224209 GGAGTCGGAAGGAACAACAAGA 60.224 50.000 0.00 0.00 0.00 3.02
39 40 3.060602 GAGTCGGAAGGAACAACAAGAG 58.939 50.000 0.00 0.00 0.00 2.85
40 41 1.531578 GTCGGAAGGAACAACAAGAGC 59.468 52.381 0.00 0.00 0.00 4.09
41 42 1.416401 TCGGAAGGAACAACAAGAGCT 59.584 47.619 0.00 0.00 0.00 4.09
42 43 2.158813 TCGGAAGGAACAACAAGAGCTT 60.159 45.455 0.00 0.00 0.00 3.74
43 44 2.618709 CGGAAGGAACAACAAGAGCTTT 59.381 45.455 0.00 0.00 0.00 3.51
44 45 3.548818 CGGAAGGAACAACAAGAGCTTTG 60.549 47.826 0.00 0.00 0.00 2.77
45 46 3.381590 GGAAGGAACAACAAGAGCTTTGT 59.618 43.478 8.03 8.03 37.55 2.83
46 47 4.142160 GGAAGGAACAACAAGAGCTTTGTT 60.142 41.667 12.84 12.84 46.24 2.83
50 51 4.376340 AACAACAAGAGCTTTGTTCCTG 57.624 40.909 18.20 13.29 41.09 3.86
51 52 3.620488 ACAACAAGAGCTTTGTTCCTGA 58.380 40.909 18.20 0.00 40.30 3.86
52 53 4.016444 ACAACAAGAGCTTTGTTCCTGAA 58.984 39.130 18.20 0.00 40.30 3.02
53 54 4.142381 ACAACAAGAGCTTTGTTCCTGAAC 60.142 41.667 18.20 3.07 40.30 3.18
54 55 3.891049 ACAAGAGCTTTGTTCCTGAACT 58.109 40.909 11.03 0.00 41.67 3.01
55 56 3.879892 ACAAGAGCTTTGTTCCTGAACTC 59.120 43.478 11.03 0.78 41.67 3.01
56 57 3.845781 AGAGCTTTGTTCCTGAACTCA 57.154 42.857 11.03 0.00 41.67 3.41
57 58 4.363991 AGAGCTTTGTTCCTGAACTCAT 57.636 40.909 11.03 0.00 41.67 2.90
58 59 4.070716 AGAGCTTTGTTCCTGAACTCATG 58.929 43.478 11.03 0.00 41.67 3.07
59 60 3.152341 AGCTTTGTTCCTGAACTCATGG 58.848 45.455 11.03 0.00 41.67 3.66
60 61 2.352127 GCTTTGTTCCTGAACTCATGGC 60.352 50.000 11.03 5.35 41.67 4.40
61 62 1.909700 TTGTTCCTGAACTCATGGCC 58.090 50.000 11.03 0.00 41.67 5.36
62 63 0.321564 TGTTCCTGAACTCATGGCCG 60.322 55.000 11.03 0.00 41.67 6.13
63 64 1.026718 GTTCCTGAACTCATGGCCGG 61.027 60.000 0.00 0.00 38.25 6.13
64 65 2.819984 TTCCTGAACTCATGGCCGGC 62.820 60.000 21.18 21.18 0.00 6.13
65 66 3.197790 CTGAACTCATGGCCGGCG 61.198 66.667 22.54 8.77 0.00 6.46
66 67 3.664025 CTGAACTCATGGCCGGCGA 62.664 63.158 22.54 19.14 0.00 5.54
67 68 2.435938 GAACTCATGGCCGGCGAA 60.436 61.111 22.54 12.25 0.00 4.70
68 69 2.746277 AACTCATGGCCGGCGAAC 60.746 61.111 22.54 7.39 0.00 3.95
69 70 3.545124 AACTCATGGCCGGCGAACA 62.545 57.895 22.54 13.93 0.00 3.18
70 71 3.499737 CTCATGGCCGGCGAACAC 61.500 66.667 22.54 6.51 0.00 3.32
77 78 4.308458 CCGGCGAACACCACCAGA 62.308 66.667 9.30 0.00 0.00 3.86
78 79 2.280524 CGGCGAACACCACCAGAA 60.281 61.111 0.00 0.00 0.00 3.02
79 80 1.890041 CGGCGAACACCACCAGAAA 60.890 57.895 0.00 0.00 0.00 2.52
80 81 1.440938 CGGCGAACACCACCAGAAAA 61.441 55.000 0.00 0.00 0.00 2.29
81 82 0.958822 GGCGAACACCACCAGAAAAT 59.041 50.000 0.00 0.00 0.00 1.82
82 83 1.068541 GGCGAACACCACCAGAAAATC 60.069 52.381 0.00 0.00 0.00 2.17
83 84 1.068541 GCGAACACCACCAGAAAATCC 60.069 52.381 0.00 0.00 0.00 3.01
84 85 2.504367 CGAACACCACCAGAAAATCCT 58.496 47.619 0.00 0.00 0.00 3.24
85 86 2.484264 CGAACACCACCAGAAAATCCTC 59.516 50.000 0.00 0.00 0.00 3.71
86 87 2.185004 ACACCACCAGAAAATCCTCG 57.815 50.000 0.00 0.00 0.00 4.63
87 88 1.697432 ACACCACCAGAAAATCCTCGA 59.303 47.619 0.00 0.00 0.00 4.04
88 89 2.289694 ACACCACCAGAAAATCCTCGAG 60.290 50.000 5.13 5.13 0.00 4.04
89 90 1.279271 ACCACCAGAAAATCCTCGAGG 59.721 52.381 26.32 26.32 0.00 4.63
90 91 1.279271 CCACCAGAAAATCCTCGAGGT 59.721 52.381 30.17 15.41 36.34 3.85
91 92 2.350522 CACCAGAAAATCCTCGAGGTG 58.649 52.381 30.17 19.38 38.85 4.00
92 93 1.279271 ACCAGAAAATCCTCGAGGTGG 59.721 52.381 30.17 28.23 36.34 4.61
93 94 1.279271 CCAGAAAATCCTCGAGGTGGT 59.721 52.381 30.17 15.21 36.34 4.16
94 95 2.500098 CCAGAAAATCCTCGAGGTGGTA 59.500 50.000 30.17 12.38 36.34 3.25
95 96 3.522553 CAGAAAATCCTCGAGGTGGTAC 58.477 50.000 30.17 18.95 36.34 3.34
96 97 3.195825 CAGAAAATCCTCGAGGTGGTACT 59.804 47.826 30.17 20.65 36.34 2.73
97 98 3.838903 AGAAAATCCTCGAGGTGGTACTT 59.161 43.478 30.17 15.62 36.34 2.24
98 99 3.611766 AAATCCTCGAGGTGGTACTTG 57.388 47.619 30.17 2.13 36.34 3.16
99 100 2.233305 ATCCTCGAGGTGGTACTTGT 57.767 50.000 30.17 4.61 36.34 3.16
100 101 1.254026 TCCTCGAGGTGGTACTTGTG 58.746 55.000 30.17 0.80 36.34 3.33
101 102 0.389948 CCTCGAGGTGGTACTTGTGC 60.390 60.000 24.04 0.00 0.00 4.57
102 103 0.317160 CTCGAGGTGGTACTTGTGCA 59.683 55.000 3.91 0.00 0.00 4.57
103 104 0.032952 TCGAGGTGGTACTTGTGCAC 59.967 55.000 10.75 10.75 0.00 4.57
104 105 0.033504 CGAGGTGGTACTTGTGCACT 59.966 55.000 19.41 0.00 0.00 4.40
105 106 1.512926 GAGGTGGTACTTGTGCACTG 58.487 55.000 19.41 13.21 0.00 3.66
106 107 1.070134 GAGGTGGTACTTGTGCACTGA 59.930 52.381 19.41 5.85 0.00 3.41
107 108 1.070758 AGGTGGTACTTGTGCACTGAG 59.929 52.381 19.41 17.45 0.00 3.35
108 109 1.512926 GTGGTACTTGTGCACTGAGG 58.487 55.000 19.41 7.78 0.00 3.86
109 110 1.070134 GTGGTACTTGTGCACTGAGGA 59.930 52.381 19.41 9.97 0.00 3.71
110 111 1.070134 TGGTACTTGTGCACTGAGGAC 59.930 52.381 21.11 21.11 39.32 3.85
111 112 1.608283 GGTACTTGTGCACTGAGGACC 60.608 57.143 28.07 28.07 37.25 4.46
112 113 1.344763 GTACTTGTGCACTGAGGACCT 59.655 52.381 19.41 0.00 37.86 3.85
113 114 0.107456 ACTTGTGCACTGAGGACCTG 59.893 55.000 19.41 0.00 37.86 4.00
114 115 0.107456 CTTGTGCACTGAGGACCTGT 59.893 55.000 19.41 0.00 37.86 4.00
115 116 0.179048 TTGTGCACTGAGGACCTGTG 60.179 55.000 19.41 2.71 44.52 3.66
118 119 2.047844 CACTGAGGACCTGTGCCG 60.048 66.667 0.00 0.00 37.79 5.69
119 120 4.008933 ACTGAGGACCTGTGCCGC 62.009 66.667 0.00 0.00 0.00 6.53
132 133 3.737172 GCCGCGGCATGTCAAGTT 61.737 61.111 43.55 0.00 41.49 2.66
133 134 2.176546 CCGCGGCATGTCAAGTTG 59.823 61.111 14.67 0.00 0.00 3.16
134 135 2.502510 CGCGGCATGTCAAGTTGC 60.503 61.111 0.00 0.00 38.14 4.17
135 136 2.644418 GCGGCATGTCAAGTTGCA 59.356 55.556 0.00 0.04 40.66 4.08
136 137 1.730547 GCGGCATGTCAAGTTGCAC 60.731 57.895 0.00 0.00 40.66 4.57
137 138 1.081242 CGGCATGTCAAGTTGCACC 60.081 57.895 0.00 0.00 40.66 5.01
138 139 1.081242 GGCATGTCAAGTTGCACCG 60.081 57.895 0.00 0.00 40.66 4.94
139 140 1.514678 GGCATGTCAAGTTGCACCGA 61.515 55.000 0.00 0.00 40.66 4.69
140 141 0.385974 GCATGTCAAGTTGCACCGAC 60.386 55.000 0.00 0.00 38.72 4.79
141 142 0.943673 CATGTCAAGTTGCACCGACA 59.056 50.000 8.58 8.58 42.19 4.35
142 143 1.333308 CATGTCAAGTTGCACCGACAA 59.667 47.619 9.83 0.00 41.39 3.18
143 144 1.013596 TGTCAAGTTGCACCGACAAG 58.986 50.000 0.00 0.00 35.54 3.16
144 145 1.295792 GTCAAGTTGCACCGACAAGA 58.704 50.000 0.00 0.00 0.00 3.02
145 146 1.873591 GTCAAGTTGCACCGACAAGAT 59.126 47.619 0.00 0.00 0.00 2.40
146 147 2.096218 GTCAAGTTGCACCGACAAGATC 60.096 50.000 0.00 0.00 0.00 2.75
147 148 2.146342 CAAGTTGCACCGACAAGATCT 58.854 47.619 0.00 0.00 0.00 2.75
148 149 2.086054 AGTTGCACCGACAAGATCTC 57.914 50.000 0.00 0.00 0.00 2.75
149 150 1.079503 GTTGCACCGACAAGATCTCC 58.920 55.000 0.00 0.00 0.00 3.71
150 151 0.389817 TTGCACCGACAAGATCTCCG 60.390 55.000 0.00 0.19 0.00 4.63
151 152 2.167861 GCACCGACAAGATCTCCGC 61.168 63.158 0.00 0.00 0.00 5.54
152 153 1.519455 CACCGACAAGATCTCCGCC 60.519 63.158 0.00 0.00 0.00 6.13
153 154 2.278857 CCGACAAGATCTCCGCCG 60.279 66.667 0.00 0.00 0.00 6.46
154 155 2.956964 CGACAAGATCTCCGCCGC 60.957 66.667 0.00 0.00 0.00 6.53
155 156 2.586357 GACAAGATCTCCGCCGCC 60.586 66.667 0.00 0.00 0.00 6.13
156 157 4.514577 ACAAGATCTCCGCCGCCG 62.515 66.667 0.00 0.00 0.00 6.46
157 158 4.514577 CAAGATCTCCGCCGCCGT 62.515 66.667 0.00 0.00 0.00 5.68
158 159 2.831742 AAGATCTCCGCCGCCGTA 60.832 61.111 0.00 0.00 0.00 4.02
159 160 2.201022 AAGATCTCCGCCGCCGTAT 61.201 57.895 0.00 0.00 0.00 3.06
160 161 2.126424 GATCTCCGCCGCCGTATC 60.126 66.667 0.00 0.00 0.00 2.24
161 162 2.910479 ATCTCCGCCGCCGTATCA 60.910 61.111 0.00 0.00 0.00 2.15
162 163 3.208884 ATCTCCGCCGCCGTATCAC 62.209 63.158 0.00 0.00 0.00 3.06
163 164 4.201679 CTCCGCCGCCGTATCACA 62.202 66.667 0.00 0.00 0.00 3.58
164 165 3.709880 CTCCGCCGCCGTATCACAA 62.710 63.158 0.00 0.00 0.00 3.33
165 166 3.261951 CCGCCGCCGTATCACAAG 61.262 66.667 0.00 0.00 0.00 3.16
166 167 2.202690 CGCCGCCGTATCACAAGA 60.203 61.111 0.00 0.00 0.00 3.02
167 168 1.807981 CGCCGCCGTATCACAAGAA 60.808 57.895 0.00 0.00 0.00 2.52
168 169 1.355796 CGCCGCCGTATCACAAGAAA 61.356 55.000 0.00 0.00 0.00 2.52
169 170 1.014352 GCCGCCGTATCACAAGAAAT 58.986 50.000 0.00 0.00 0.00 2.17
170 171 1.400494 GCCGCCGTATCACAAGAAATT 59.600 47.619 0.00 0.00 0.00 1.82
171 172 2.538939 GCCGCCGTATCACAAGAAATTC 60.539 50.000 0.00 0.00 0.00 2.17
172 173 2.285602 CCGCCGTATCACAAGAAATTCG 60.286 50.000 0.00 0.00 0.00 3.34
173 174 2.705154 GCCGTATCACAAGAAATTCGC 58.295 47.619 0.00 0.00 0.00 4.70
174 175 2.845764 GCCGTATCACAAGAAATTCGCG 60.846 50.000 0.00 0.00 0.00 5.87
175 176 2.285602 CCGTATCACAAGAAATTCGCGG 60.286 50.000 6.13 0.00 0.00 6.46
176 177 2.705154 GTATCACAAGAAATTCGCGGC 58.295 47.619 6.13 0.00 0.00 6.53
177 178 0.451783 ATCACAAGAAATTCGCGGCC 59.548 50.000 6.13 0.00 0.00 6.13
178 179 0.605319 TCACAAGAAATTCGCGGCCT 60.605 50.000 6.13 0.00 0.00 5.19
179 180 0.179189 CACAAGAAATTCGCGGCCTC 60.179 55.000 6.13 0.00 0.00 4.70
180 181 0.321653 ACAAGAAATTCGCGGCCTCT 60.322 50.000 6.13 0.22 0.00 3.69
181 182 0.097674 CAAGAAATTCGCGGCCTCTG 59.902 55.000 6.13 0.00 0.00 3.35
182 183 0.036388 AAGAAATTCGCGGCCTCTGA 60.036 50.000 6.13 0.00 0.00 3.27
183 184 0.741221 AGAAATTCGCGGCCTCTGAC 60.741 55.000 6.13 0.00 0.00 3.51
184 185 1.706287 GAAATTCGCGGCCTCTGACC 61.706 60.000 6.13 0.00 0.00 4.02
185 186 3.682292 AATTCGCGGCCTCTGACCC 62.682 63.158 6.13 0.00 0.00 4.46
201 202 3.394494 CCCCCACGTACATCACCA 58.606 61.111 0.00 0.00 0.00 4.17
202 203 1.078708 CCCCCACGTACATCACCAC 60.079 63.158 0.00 0.00 0.00 4.16
203 204 1.078708 CCCCACGTACATCACCACC 60.079 63.158 0.00 0.00 0.00 4.61
204 205 1.447140 CCCACGTACATCACCACCG 60.447 63.158 0.00 0.00 0.00 4.94
205 206 2.098233 CCACGTACATCACCACCGC 61.098 63.158 0.00 0.00 0.00 5.68
206 207 2.098233 CACGTACATCACCACCGCC 61.098 63.158 0.00 0.00 0.00 6.13
207 208 2.263227 CGTACATCACCACCGCCA 59.737 61.111 0.00 0.00 0.00 5.69
208 209 1.374885 CGTACATCACCACCGCCAA 60.375 57.895 0.00 0.00 0.00 4.52
209 210 1.632046 CGTACATCACCACCGCCAAC 61.632 60.000 0.00 0.00 0.00 3.77
210 211 0.321298 GTACATCACCACCGCCAACT 60.321 55.000 0.00 0.00 0.00 3.16
211 212 0.321210 TACATCACCACCGCCAACTG 60.321 55.000 0.00 0.00 0.00 3.16
212 213 2.672996 ATCACCACCGCCAACTGC 60.673 61.111 0.00 0.00 0.00 4.40
213 214 3.490031 ATCACCACCGCCAACTGCA 62.490 57.895 0.00 0.00 41.33 4.41
214 215 3.663176 CACCACCGCCAACTGCAG 61.663 66.667 13.48 13.48 41.33 4.41
228 229 4.996434 GCAGCCGGCGCTCCATAT 62.996 66.667 28.12 5.40 43.95 1.78
229 230 2.740055 CAGCCGGCGCTCCATATC 60.740 66.667 23.20 0.00 43.95 1.63
230 231 4.363990 AGCCGGCGCTCCATATCG 62.364 66.667 23.20 0.00 43.95 2.92
231 232 4.664677 GCCGGCGCTCCATATCGT 62.665 66.667 12.58 0.00 0.00 3.73
232 233 2.029073 CCGGCGCTCCATATCGTT 59.971 61.111 7.64 0.00 0.00 3.85
233 234 2.022129 CCGGCGCTCCATATCGTTC 61.022 63.158 7.64 0.00 0.00 3.95
234 235 1.299850 CGGCGCTCCATATCGTTCA 60.300 57.895 7.64 0.00 0.00 3.18
235 236 0.667487 CGGCGCTCCATATCGTTCAT 60.667 55.000 7.64 0.00 0.00 2.57
236 237 1.071605 GGCGCTCCATATCGTTCATC 58.928 55.000 7.64 0.00 0.00 2.92
237 238 0.710567 GCGCTCCATATCGTTCATCG 59.289 55.000 0.00 0.00 41.41 3.84
238 239 1.930817 GCGCTCCATATCGTTCATCGT 60.931 52.381 0.00 0.00 40.80 3.73
239 240 2.667448 GCGCTCCATATCGTTCATCGTA 60.667 50.000 0.00 0.00 40.80 3.43
240 241 3.164358 CGCTCCATATCGTTCATCGTAG 58.836 50.000 0.00 0.00 40.80 3.51
241 242 2.917971 GCTCCATATCGTTCATCGTAGC 59.082 50.000 0.00 0.00 40.80 3.58
242 243 3.611766 GCTCCATATCGTTCATCGTAGCA 60.612 47.826 0.00 0.00 40.80 3.49
243 244 4.160736 TCCATATCGTTCATCGTAGCAG 57.839 45.455 0.00 0.00 40.80 4.24
244 245 3.818773 TCCATATCGTTCATCGTAGCAGA 59.181 43.478 0.00 0.00 40.80 4.26
245 246 4.277423 TCCATATCGTTCATCGTAGCAGAA 59.723 41.667 0.00 0.00 40.80 3.02
246 247 4.383052 CCATATCGTTCATCGTAGCAGAAC 59.617 45.833 0.00 0.00 40.80 3.01
249 250 1.278238 GTTCATCGTAGCAGAACGGG 58.722 55.000 6.45 1.02 43.05 5.28
250 251 0.174845 TTCATCGTAGCAGAACGGGG 59.825 55.000 6.45 0.73 43.05 5.73
251 252 1.883084 CATCGTAGCAGAACGGGGC 60.883 63.158 6.45 0.00 43.05 5.80
252 253 2.355986 ATCGTAGCAGAACGGGGCA 61.356 57.895 6.45 0.00 43.05 5.36
253 254 2.298158 ATCGTAGCAGAACGGGGCAG 62.298 60.000 6.45 0.00 43.05 4.85
254 255 2.125106 GTAGCAGAACGGGGCAGG 60.125 66.667 0.00 0.00 0.00 4.85
255 256 2.284331 TAGCAGAACGGGGCAGGA 60.284 61.111 0.00 0.00 0.00 3.86
256 257 1.689233 TAGCAGAACGGGGCAGGAT 60.689 57.895 0.00 0.00 0.00 3.24
257 258 1.971505 TAGCAGAACGGGGCAGGATG 61.972 60.000 0.00 0.00 40.87 3.51
268 269 4.950479 CAGGATGCAGACCTCCAC 57.050 61.111 11.60 0.00 35.35 4.02
269 270 1.222936 CAGGATGCAGACCTCCACC 59.777 63.158 11.60 0.00 35.35 4.61
270 271 2.187946 GGATGCAGACCTCCACCG 59.812 66.667 0.00 0.00 0.00 4.94
271 272 2.359169 GGATGCAGACCTCCACCGA 61.359 63.158 0.00 0.00 0.00 4.69
272 273 1.153549 GATGCAGACCTCCACCGAC 60.154 63.158 0.00 0.00 0.00 4.79
273 274 2.890847 GATGCAGACCTCCACCGACG 62.891 65.000 0.00 0.00 0.00 5.12
274 275 4.436998 GCAGACCTCCACCGACGG 62.437 72.222 13.61 13.61 0.00 4.79
275 276 4.436998 CAGACCTCCACCGACGGC 62.437 72.222 15.39 0.00 0.00 5.68
296 297 3.119096 GGCGTCTCCGGAAACAGC 61.119 66.667 8.98 11.93 33.68 4.40
297 298 3.479269 GCGTCTCCGGAAACAGCG 61.479 66.667 8.98 8.36 33.68 5.18
298 299 2.809601 CGTCTCCGGAAACAGCGG 60.810 66.667 8.98 0.00 0.00 5.52
299 300 2.434359 GTCTCCGGAAACAGCGGG 60.434 66.667 5.23 0.00 0.00 6.13
300 301 2.602267 TCTCCGGAAACAGCGGGA 60.602 61.111 5.23 0.00 36.10 5.14
301 302 2.125512 CTCCGGAAACAGCGGGAG 60.126 66.667 5.23 0.00 45.18 4.30
302 303 3.665675 CTCCGGAAACAGCGGGAGG 62.666 68.421 5.23 0.00 46.11 4.30
303 304 3.702048 CCGGAAACAGCGGGAGGA 61.702 66.667 0.00 0.00 0.00 3.71
304 305 2.345991 CGGAAACAGCGGGAGGAA 59.654 61.111 0.00 0.00 0.00 3.36
305 306 1.741770 CGGAAACAGCGGGAGGAAG 60.742 63.158 0.00 0.00 0.00 3.46
306 307 1.375326 GGAAACAGCGGGAGGAAGT 59.625 57.895 0.00 0.00 0.00 3.01
307 308 0.250770 GGAAACAGCGGGAGGAAGTT 60.251 55.000 0.00 0.00 0.00 2.66
308 309 0.875059 GAAACAGCGGGAGGAAGTTG 59.125 55.000 0.00 0.00 0.00 3.16
309 310 0.537371 AAACAGCGGGAGGAAGTTGG 60.537 55.000 0.00 0.00 0.00 3.77
310 311 2.045926 CAGCGGGAGGAAGTTGGG 60.046 66.667 0.00 0.00 0.00 4.12
311 312 4.035102 AGCGGGAGGAAGTTGGGC 62.035 66.667 0.00 0.00 0.00 5.36
314 315 4.344865 GGGAGGAAGTTGGGCGCA 62.345 66.667 10.83 0.00 0.00 6.09
315 316 3.056328 GGAGGAAGTTGGGCGCAC 61.056 66.667 10.83 6.04 0.00 5.34
316 317 3.056328 GAGGAAGTTGGGCGCACC 61.056 66.667 7.46 7.71 40.81 5.01
317 318 3.553095 GAGGAAGTTGGGCGCACCT 62.553 63.158 7.46 10.02 41.11 4.00
318 319 3.365265 GGAAGTTGGGCGCACCTG 61.365 66.667 7.46 0.00 41.11 4.00
319 320 3.365265 GAAGTTGGGCGCACCTGG 61.365 66.667 7.46 0.00 41.11 4.45
360 361 3.970410 CCTGCCCAGGCTCCAACA 61.970 66.667 10.58 0.00 42.44 3.33
361 362 2.115910 CTGCCCAGGCTCCAACAA 59.884 61.111 10.58 0.00 42.51 2.83
362 363 2.203480 TGCCCAGGCTCCAACAAC 60.203 61.111 10.58 0.00 42.51 3.32
363 364 2.203480 GCCCAGGCTCCAACAACA 60.203 61.111 0.08 0.00 38.26 3.33
364 365 1.832167 GCCCAGGCTCCAACAACAA 60.832 57.895 0.08 0.00 38.26 2.83
365 366 2.041153 CCCAGGCTCCAACAACAAC 58.959 57.895 0.00 0.00 0.00 3.32
366 367 1.463553 CCCAGGCTCCAACAACAACC 61.464 60.000 0.00 0.00 0.00 3.77
367 368 0.468029 CCAGGCTCCAACAACAACCT 60.468 55.000 0.00 0.00 0.00 3.50
368 369 0.954452 CAGGCTCCAACAACAACCTC 59.046 55.000 0.00 0.00 0.00 3.85
369 370 0.178990 AGGCTCCAACAACAACCTCC 60.179 55.000 0.00 0.00 0.00 4.30
370 371 1.179174 GGCTCCAACAACAACCTCCC 61.179 60.000 0.00 0.00 0.00 4.30
371 372 1.179174 GCTCCAACAACAACCTCCCC 61.179 60.000 0.00 0.00 0.00 4.81
372 373 0.539669 CTCCAACAACAACCTCCCCC 60.540 60.000 0.00 0.00 0.00 5.40
391 392 3.394836 GTCCCGAGCCTGCCTCTT 61.395 66.667 0.00 0.00 38.49 2.85
392 393 3.077556 TCCCGAGCCTGCCTCTTC 61.078 66.667 0.00 0.00 38.49 2.87
393 394 4.521062 CCCGAGCCTGCCTCTTCG 62.521 72.222 0.00 0.00 38.49 3.79
396 397 4.087892 GAGCCTGCCTCTTCGCCA 62.088 66.667 0.00 0.00 37.60 5.69
397 398 4.400961 AGCCTGCCTCTTCGCCAC 62.401 66.667 0.00 0.00 0.00 5.01
410 411 4.704833 GCCACCGGCTCTGCAAGA 62.705 66.667 0.00 0.00 46.69 3.02
411 412 2.270205 CCACCGGCTCTGCAAGAT 59.730 61.111 0.00 0.00 45.62 2.40
412 413 2.110967 CCACCGGCTCTGCAAGATG 61.111 63.158 0.00 0.00 45.62 2.90
420 421 3.736720 GGCTCTGCAAGATGATGACATA 58.263 45.455 0.00 0.00 45.62 2.29
475 480 3.942130 TTTGCTGATTCAGTCTCTCGA 57.058 42.857 14.90 0.00 33.43 4.04
476 481 3.500558 TTGCTGATTCAGTCTCTCGAG 57.499 47.619 14.90 5.93 33.43 4.04
478 483 1.748493 GCTGATTCAGTCTCTCGAGGT 59.252 52.381 13.56 0.00 33.43 3.85
479 484 2.223479 GCTGATTCAGTCTCTCGAGGTC 60.223 54.545 13.56 3.54 33.43 3.85
480 485 3.278574 CTGATTCAGTCTCTCGAGGTCT 58.721 50.000 13.56 5.89 0.00 3.85
511 526 4.566545 AAGAAATGTTCACGTGCATTCA 57.433 36.364 17.95 11.43 34.61 2.57
526 541 5.840781 CGTGCATTCATAACGATGATTGTAC 59.159 40.000 15.25 15.25 45.62 2.90
538 553 4.663140 CGATGATTGTACGTGTGTGTGTTC 60.663 45.833 0.00 0.00 0.00 3.18
560 575 1.663695 AAGCGCTTGCGTTATACCAT 58.336 45.000 24.40 0.00 45.69 3.55
572 587 6.607689 TGCGTTATACCATGTTTTTCTGAAG 58.392 36.000 0.00 0.00 0.00 3.02
599 614 1.679977 CCATGGTGCCCCTTCTGTG 60.680 63.158 2.57 0.00 0.00 3.66
638 653 3.068590 CCATTTGTCAGCCAAACAGAGTT 59.931 43.478 0.00 0.00 45.43 3.01
656 671 5.297776 CAGAGTTGTCAAATTCAGTGGAAGT 59.702 40.000 0.00 0.00 36.25 3.01
675 690 5.279506 GGAAGTCAACATACAAGAGTCCTGA 60.280 44.000 0.00 0.00 0.00 3.86
754 783 3.382832 CGTCCAGTCCGCCTTCCT 61.383 66.667 0.00 0.00 0.00 3.36
766 796 1.364171 CCTTCCTATCGCAGTCCGG 59.636 63.158 0.00 0.00 37.59 5.14
1078 1110 0.605589 AGAACTCCAGGAGCACTTCG 59.394 55.000 17.31 0.00 32.04 3.79
1330 1371 1.403249 GCTTTGCGATTGAATGTGGCT 60.403 47.619 0.00 0.00 0.00 4.75
1437 1541 3.216800 ACAACTGAGCTGCTTGAATTCA 58.783 40.909 3.38 3.38 0.00 2.57
1443 1547 5.651139 ACTGAGCTGCTTGAATTCATTACAT 59.349 36.000 9.40 0.00 0.00 2.29
1536 1640 7.443575 AGGTAGAATTATTGCTAGATGCTTGTG 59.556 37.037 0.00 0.00 43.37 3.33
1556 1660 5.981174 TGTGCTGTACAAAGAAATACGTTC 58.019 37.500 0.00 0.00 36.06 3.95
1562 1666 6.950545 TGTACAAAGAAATACGTTCCTTGTG 58.049 36.000 11.29 6.39 46.03 3.33
1959 2110 5.397326 CAGAGCTATTTTGAGAAGTTTGGC 58.603 41.667 0.00 0.00 0.00 4.52
2144 2295 4.705991 GGGTCATAGCTACTACCAGGATAC 59.294 50.000 21.88 5.78 33.46 2.24
2370 2530 5.385198 ACAATTGGGTATGGGTATGATCAC 58.615 41.667 10.83 0.00 0.00 3.06
2425 2585 6.015772 TGGGGAAGCTAAAAGTGATAACAAAC 60.016 38.462 0.00 0.00 0.00 2.93
2601 2791 2.972625 GTCATTTGGACGAGTCATGGA 58.027 47.619 5.55 0.00 36.65 3.41
2602 2792 2.932614 GTCATTTGGACGAGTCATGGAG 59.067 50.000 5.55 0.00 36.65 3.86
2603 2793 2.567169 TCATTTGGACGAGTCATGGAGT 59.433 45.455 5.55 0.00 0.00 3.85
2679 2895 8.045176 AGGTATGCACAAAAGAGTTTTAGATC 57.955 34.615 0.00 0.00 0.00 2.75
2686 2949 8.560374 GCACAAAAGAGTTTTAGATCTTAGTGT 58.440 33.333 0.00 8.98 40.35 3.55
2728 2991 8.816640 AACCATTAAACATTGATGAAACACTC 57.183 30.769 0.00 0.00 0.00 3.51
2743 3006 0.601046 CACTCGCTGAAGGCTTGACA 60.601 55.000 3.46 0.00 39.13 3.58
2787 3250 8.496707 TTTCCCGTATTCATTTTCTAACCTAC 57.503 34.615 0.00 0.00 0.00 3.18
2953 3934 6.541278 TGCATCATTTGGTCTTCTCTTATCTG 59.459 38.462 0.00 0.00 0.00 2.90
2955 3936 7.254727 GCATCATTTGGTCTTCTCTTATCTGTC 60.255 40.741 0.00 0.00 0.00 3.51
2966 3947 8.247562 TCTTCTCTTATCTGTCTTAACTGCTTC 58.752 37.037 0.00 0.00 0.00 3.86
3111 4180 8.895932 AAAACATCAACAAGTATTCGATTAGC 57.104 30.769 0.00 0.00 0.00 3.09
3113 4182 8.942338 AACATCAACAAGTATTCGATTAGCTA 57.058 30.769 0.00 0.00 0.00 3.32
3192 4270 7.211966 ACTGATGCTGAGATAAATATTTGCC 57.788 36.000 11.05 2.66 0.00 4.52
3295 4375 2.779755 AATGAGACCATGTTGCCGTA 57.220 45.000 0.00 0.00 32.36 4.02
3297 4377 2.779755 TGAGACCATGTTGCCGTATT 57.220 45.000 0.00 0.00 0.00 1.89
3298 4378 2.355197 TGAGACCATGTTGCCGTATTG 58.645 47.619 0.00 0.00 0.00 1.90
3299 4379 2.027653 TGAGACCATGTTGCCGTATTGA 60.028 45.455 0.00 0.00 0.00 2.57
3300 4380 3.006940 GAGACCATGTTGCCGTATTGAA 58.993 45.455 0.00 0.00 0.00 2.69
3302 4382 3.190535 AGACCATGTTGCCGTATTGAAAC 59.809 43.478 0.00 0.00 0.00 2.78
3303 4383 3.153919 ACCATGTTGCCGTATTGAAACT 58.846 40.909 0.00 0.00 0.00 2.66
3304 4384 3.057596 ACCATGTTGCCGTATTGAAACTG 60.058 43.478 0.00 0.00 0.00 3.16
3307 4387 3.403968 TGTTGCCGTATTGAAACTGCTA 58.596 40.909 0.00 0.00 31.60 3.49
3308 4388 4.006989 TGTTGCCGTATTGAAACTGCTAT 58.993 39.130 0.00 0.00 31.60 2.97
3309 4389 5.179533 TGTTGCCGTATTGAAACTGCTATA 58.820 37.500 0.00 0.00 31.60 1.31
3310 4390 5.064198 TGTTGCCGTATTGAAACTGCTATAC 59.936 40.000 0.00 0.00 31.60 1.47
3311 4391 5.018539 TGCCGTATTGAAACTGCTATACT 57.981 39.130 0.00 0.00 31.60 2.12
3312 4392 5.424757 TGCCGTATTGAAACTGCTATACTT 58.575 37.500 0.00 0.00 31.60 2.24
3341 4421 1.542915 ACTTTGCAGCTATGTGCCTTG 59.457 47.619 0.00 0.00 43.28 3.61
3422 4502 1.294041 TGGCTGATGATGGTTGGGTA 58.706 50.000 0.00 0.00 0.00 3.69
3496 4578 7.174413 TCAATTTTCCTGTGACCATGAATCTA 58.826 34.615 0.00 0.00 0.00 1.98
4034 5403 1.002366 GTGCGTGGTTATCTGCTGAG 58.998 55.000 0.00 0.00 0.00 3.35
4089 5459 6.935741 TTTTTAGCTAGTTTGTGAGCTTCA 57.064 33.333 1.16 0.00 46.99 3.02
4113 5483 1.988063 CTGAGTGGTGACATCTGACG 58.012 55.000 0.00 0.00 46.14 4.35
4267 5637 2.022240 GCCCCACCTCTAGCTTCTCG 62.022 65.000 0.00 0.00 0.00 4.04
4284 5654 8.196378 AGCTTCTCGTATAATCCTTTTCCTAT 57.804 34.615 0.00 0.00 0.00 2.57
4286 5656 9.274206 GCTTCTCGTATAATCCTTTTCCTATTT 57.726 33.333 0.00 0.00 0.00 1.40
4314 5684 4.689612 TCTGGCTTCTGAACTAGTTTGT 57.310 40.909 10.02 0.00 0.00 2.83
4320 5690 7.168219 TGGCTTCTGAACTAGTTTGTGATAAT 58.832 34.615 10.02 0.00 0.00 1.28
4351 5721 6.373759 AGAAGCCGGAAATAATTAAGGGAAT 58.626 36.000 5.05 0.00 0.00 3.01
4378 5748 1.074850 AGAGAAGCTAGGGAGGGGC 60.075 63.158 0.00 0.00 0.00 5.80
4502 5872 4.816392 ACGTAGTTACATGATGCAAGTCA 58.184 39.130 0.00 0.00 37.78 3.41
4505 5875 6.371548 ACGTAGTTACATGATGCAAGTCAAAT 59.628 34.615 0.00 0.00 37.78 2.32
4506 5876 7.094805 ACGTAGTTACATGATGCAAGTCAAATT 60.095 33.333 0.00 0.00 37.78 1.82
4533 5903 8.347035 TGAAGTAATTAAAAACTACAGTGCCAC 58.653 33.333 0.00 0.00 0.00 5.01
4537 5907 2.032680 AAAACTACAGTGCCACGTGT 57.967 45.000 15.65 0.00 0.00 4.49
4544 5914 2.361789 ACAGTGCCACGTGTAAACTTT 58.638 42.857 15.65 5.19 0.00 2.66
4551 5995 4.024725 TGCCACGTGTAAACTTTGTATGTC 60.025 41.667 15.65 0.00 0.00 3.06
4552 5996 4.612033 GCCACGTGTAAACTTTGTATGTCC 60.612 45.833 15.65 0.00 0.00 4.02
4572 6016 4.099419 GTCCAAGGGTTTGACAACTTCATT 59.901 41.667 0.00 0.00 36.36 2.57
4582 6026 4.358851 TGACAACTTCATTCGCAAAAAGG 58.641 39.130 0.00 0.00 0.00 3.11
4585 6029 5.043248 ACAACTTCATTCGCAAAAAGGAAG 58.957 37.500 13.24 13.24 46.90 3.46
4629 6073 5.806654 AACATTTGGTCTTTAAGCCACAT 57.193 34.783 7.44 4.94 34.02 3.21
4630 6074 5.391312 ACATTTGGTCTTTAAGCCACATC 57.609 39.130 7.44 0.00 34.02 3.06
4632 6076 2.507407 TGGTCTTTAAGCCACATCCC 57.493 50.000 4.47 0.00 0.00 3.85
4640 6105 3.415087 GCCACATCCCCTCCTGCT 61.415 66.667 0.00 0.00 0.00 4.24
4703 6170 6.796785 AATATTTGGGCTTTCAGCTACAAT 57.203 33.333 7.07 1.67 41.99 2.71
4704 6171 6.796785 ATATTTGGGCTTTCAGCTACAATT 57.203 33.333 7.07 6.73 41.99 2.32
4705 6172 4.519540 TTTGGGCTTTCAGCTACAATTC 57.480 40.909 7.07 0.00 41.99 2.17
4706 6173 3.153369 TGGGCTTTCAGCTACAATTCA 57.847 42.857 0.00 0.00 41.99 2.57
4707 6174 3.495331 TGGGCTTTCAGCTACAATTCAA 58.505 40.909 0.00 0.00 41.99 2.69
4708 6175 3.255642 TGGGCTTTCAGCTACAATTCAAC 59.744 43.478 0.00 0.00 41.99 3.18
4709 6176 3.367395 GGGCTTTCAGCTACAATTCAACC 60.367 47.826 0.00 0.00 41.99 3.77
4710 6177 3.367395 GGCTTTCAGCTACAATTCAACCC 60.367 47.826 0.00 0.00 41.99 4.11
4711 6178 3.255642 GCTTTCAGCTACAATTCAACCCA 59.744 43.478 0.00 0.00 38.45 4.51
4730 6197 2.436824 GCTTCCCAGCCGTTCTCC 60.437 66.667 0.00 0.00 40.61 3.71
4734 6201 4.148825 CCCAGCCGTTCTCCCTCG 62.149 72.222 0.00 0.00 0.00 4.63
4748 6215 0.902531 CCCTCGAGCTTCCCTGTTTA 59.097 55.000 6.99 0.00 0.00 2.01
4749 6216 1.134670 CCCTCGAGCTTCCCTGTTTAG 60.135 57.143 6.99 0.00 0.00 1.85
4750 6217 1.825474 CCTCGAGCTTCCCTGTTTAGA 59.175 52.381 6.99 0.00 0.00 2.10
4751 6218 2.233922 CCTCGAGCTTCCCTGTTTAGAA 59.766 50.000 6.99 0.00 0.00 2.10
4752 6219 3.306780 CCTCGAGCTTCCCTGTTTAGAAA 60.307 47.826 6.99 0.00 0.00 2.52
4753 6220 4.315803 CTCGAGCTTCCCTGTTTAGAAAA 58.684 43.478 0.00 0.00 0.00 2.29
4754 6221 4.710324 TCGAGCTTCCCTGTTTAGAAAAA 58.290 39.130 0.00 0.00 0.00 1.94
4755 6222 5.313712 TCGAGCTTCCCTGTTTAGAAAAAT 58.686 37.500 0.00 0.00 0.00 1.82
4756 6223 6.469410 TCGAGCTTCCCTGTTTAGAAAAATA 58.531 36.000 0.00 0.00 0.00 1.40
4757 6224 6.370718 TCGAGCTTCCCTGTTTAGAAAAATAC 59.629 38.462 0.00 0.00 0.00 1.89
4758 6225 6.403309 CGAGCTTCCCTGTTTAGAAAAATACC 60.403 42.308 0.00 0.00 0.00 2.73
4759 6226 5.715279 AGCTTCCCTGTTTAGAAAAATACCC 59.285 40.000 0.00 0.00 0.00 3.69
4760 6227 5.715279 GCTTCCCTGTTTAGAAAAATACCCT 59.285 40.000 0.00 0.00 0.00 4.34
4761 6228 6.210784 GCTTCCCTGTTTAGAAAAATACCCTT 59.789 38.462 0.00 0.00 0.00 3.95
4762 6229 7.395206 GCTTCCCTGTTTAGAAAAATACCCTTA 59.605 37.037 0.00 0.00 0.00 2.69
4763 6230 8.873186 TTCCCTGTTTAGAAAAATACCCTTAG 57.127 34.615 0.00 0.00 0.00 2.18
4764 6231 8.222138 TCCCTGTTTAGAAAAATACCCTTAGA 57.778 34.615 0.00 0.00 0.00 2.10
4765 6232 8.326529 TCCCTGTTTAGAAAAATACCCTTAGAG 58.673 37.037 0.00 0.00 0.00 2.43
4766 6233 8.326529 CCCTGTTTAGAAAAATACCCTTAGAGA 58.673 37.037 0.00 0.00 0.00 3.10
4767 6234 9.734984 CCTGTTTAGAAAAATACCCTTAGAGAA 57.265 33.333 0.00 0.00 0.00 2.87
4774 6241 9.508642 AGAAAAATACCCTTAGAGAAACTGAAG 57.491 33.333 0.00 0.00 0.00 3.02
4775 6242 9.503399 GAAAAATACCCTTAGAGAAACTGAAGA 57.497 33.333 0.00 0.00 0.00 2.87
4776 6243 8.850007 AAAATACCCTTAGAGAAACTGAAGAC 57.150 34.615 0.00 0.00 0.00 3.01
4777 6244 7.554959 AATACCCTTAGAGAAACTGAAGACA 57.445 36.000 0.00 0.00 0.00 3.41
4778 6245 5.888982 ACCCTTAGAGAAACTGAAGACAA 57.111 39.130 0.00 0.00 0.00 3.18
4779 6246 5.612351 ACCCTTAGAGAAACTGAAGACAAC 58.388 41.667 0.00 0.00 0.00 3.32
4780 6247 5.130477 ACCCTTAGAGAAACTGAAGACAACA 59.870 40.000 0.00 0.00 0.00 3.33
4781 6248 6.183361 ACCCTTAGAGAAACTGAAGACAACAT 60.183 38.462 0.00 0.00 0.00 2.71
4782 6249 6.370166 CCCTTAGAGAAACTGAAGACAACATC 59.630 42.308 0.00 0.00 0.00 3.06
4783 6250 7.158021 CCTTAGAGAAACTGAAGACAACATCT 58.842 38.462 0.00 0.00 40.46 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.746375 CCTTCCGACTCCCATGGGG 61.746 68.421 30.93 22.42 46.11 4.96
11 12 1.271840 TTCCTTCCGACTCCCATGGG 61.272 60.000 26.30 26.30 0.00 4.00
12 13 0.107654 GTTCCTTCCGACTCCCATGG 60.108 60.000 4.14 4.14 0.00 3.66
13 14 0.613260 TGTTCCTTCCGACTCCCATG 59.387 55.000 0.00 0.00 0.00 3.66
14 15 1.003233 GTTGTTCCTTCCGACTCCCAT 59.997 52.381 0.00 0.00 0.00 4.00
15 16 0.395312 GTTGTTCCTTCCGACTCCCA 59.605 55.000 0.00 0.00 0.00 4.37
16 17 0.395312 TGTTGTTCCTTCCGACTCCC 59.605 55.000 0.00 0.00 0.00 4.30
17 18 2.143925 CTTGTTGTTCCTTCCGACTCC 58.856 52.381 0.00 0.00 0.00 3.85
18 19 3.060602 CTCTTGTTGTTCCTTCCGACTC 58.939 50.000 0.00 0.00 0.00 3.36
19 20 2.807108 GCTCTTGTTGTTCCTTCCGACT 60.807 50.000 0.00 0.00 0.00 4.18
20 21 1.531578 GCTCTTGTTGTTCCTTCCGAC 59.468 52.381 0.00 0.00 0.00 4.79
21 22 1.416401 AGCTCTTGTTGTTCCTTCCGA 59.584 47.619 0.00 0.00 0.00 4.55
22 23 1.884235 AGCTCTTGTTGTTCCTTCCG 58.116 50.000 0.00 0.00 0.00 4.30
23 24 3.381590 ACAAAGCTCTTGTTGTTCCTTCC 59.618 43.478 8.03 0.00 34.29 3.46
24 25 4.639135 ACAAAGCTCTTGTTGTTCCTTC 57.361 40.909 8.03 0.00 34.29 3.46
30 31 3.620488 TCAGGAACAAAGCTCTTGTTGT 58.380 40.909 22.97 12.27 42.11 3.32
31 32 4.096984 AGTTCAGGAACAAAGCTCTTGTTG 59.903 41.667 22.97 11.71 42.11 3.33
32 33 4.273318 AGTTCAGGAACAAAGCTCTTGTT 58.727 39.130 19.96 19.96 44.43 2.83
33 34 3.879892 GAGTTCAGGAACAAAGCTCTTGT 59.120 43.478 14.06 8.03 43.47 3.16
34 35 3.879295 TGAGTTCAGGAACAAAGCTCTTG 59.121 43.478 14.06 6.98 43.47 3.02
35 36 4.156455 TGAGTTCAGGAACAAAGCTCTT 57.844 40.909 14.06 0.00 43.47 2.85
36 37 3.845781 TGAGTTCAGGAACAAAGCTCT 57.154 42.857 14.06 0.00 43.47 4.09
37 38 3.190118 CCATGAGTTCAGGAACAAAGCTC 59.810 47.826 14.06 3.70 43.47 4.09
38 39 3.152341 CCATGAGTTCAGGAACAAAGCT 58.848 45.455 14.06 0.00 43.47 3.74
39 40 2.352127 GCCATGAGTTCAGGAACAAAGC 60.352 50.000 14.06 6.07 43.47 3.51
40 41 2.229784 GGCCATGAGTTCAGGAACAAAG 59.770 50.000 14.06 1.96 43.47 2.77
41 42 2.238521 GGCCATGAGTTCAGGAACAAA 58.761 47.619 14.06 2.62 43.47 2.83
42 43 1.881925 CGGCCATGAGTTCAGGAACAA 60.882 52.381 14.06 2.96 43.47 2.83
43 44 0.321564 CGGCCATGAGTTCAGGAACA 60.322 55.000 14.06 0.00 43.47 3.18
44 45 1.026718 CCGGCCATGAGTTCAGGAAC 61.027 60.000 2.24 4.00 41.45 3.62
45 46 1.299648 CCGGCCATGAGTTCAGGAA 59.700 57.895 2.24 0.00 0.00 3.36
46 47 2.989639 CCGGCCATGAGTTCAGGA 59.010 61.111 2.24 0.00 0.00 3.86
47 48 2.825836 GCCGGCCATGAGTTCAGG 60.826 66.667 18.11 0.00 0.00 3.86
48 49 3.197790 CGCCGGCCATGAGTTCAG 61.198 66.667 23.46 0.00 0.00 3.02
49 50 3.247056 TTCGCCGGCCATGAGTTCA 62.247 57.895 23.46 0.00 0.00 3.18
50 51 2.435938 TTCGCCGGCCATGAGTTC 60.436 61.111 23.46 0.00 0.00 3.01
51 52 2.746277 GTTCGCCGGCCATGAGTT 60.746 61.111 23.46 0.00 0.00 3.01
52 53 4.015406 TGTTCGCCGGCCATGAGT 62.015 61.111 23.46 0.00 0.00 3.41
53 54 3.499737 GTGTTCGCCGGCCATGAG 61.500 66.667 23.46 6.36 0.00 2.90
62 63 0.958822 ATTTTCTGGTGGTGTTCGCC 59.041 50.000 0.00 0.00 46.03 5.54
63 64 1.068541 GGATTTTCTGGTGGTGTTCGC 60.069 52.381 0.00 0.00 0.00 4.70
64 65 2.484264 GAGGATTTTCTGGTGGTGTTCG 59.516 50.000 0.00 0.00 0.00 3.95
65 66 2.484264 CGAGGATTTTCTGGTGGTGTTC 59.516 50.000 0.00 0.00 0.00 3.18
66 67 2.105821 TCGAGGATTTTCTGGTGGTGTT 59.894 45.455 0.00 0.00 0.00 3.32
67 68 1.697432 TCGAGGATTTTCTGGTGGTGT 59.303 47.619 0.00 0.00 0.00 4.16
68 69 2.350522 CTCGAGGATTTTCTGGTGGTG 58.649 52.381 3.91 0.00 0.00 4.17
69 70 1.279271 CCTCGAGGATTTTCTGGTGGT 59.721 52.381 28.21 0.00 37.39 4.16
70 71 1.279271 ACCTCGAGGATTTTCTGGTGG 59.721 52.381 37.69 7.77 38.94 4.61
71 72 2.350522 CACCTCGAGGATTTTCTGGTG 58.649 52.381 37.69 18.54 38.94 4.17
72 73 1.279271 CCACCTCGAGGATTTTCTGGT 59.721 52.381 37.69 10.13 38.94 4.00
73 74 1.279271 ACCACCTCGAGGATTTTCTGG 59.721 52.381 37.69 31.38 38.94 3.86
74 75 2.770164 ACCACCTCGAGGATTTTCTG 57.230 50.000 37.69 22.73 38.94 3.02
75 76 3.442076 AGTACCACCTCGAGGATTTTCT 58.558 45.455 37.69 23.63 38.94 2.52
76 77 3.889520 AGTACCACCTCGAGGATTTTC 57.110 47.619 37.69 21.96 38.94 2.29
77 78 3.326880 ACAAGTACCACCTCGAGGATTTT 59.673 43.478 37.69 19.55 38.94 1.82
78 79 2.904434 ACAAGTACCACCTCGAGGATTT 59.096 45.455 37.69 21.28 38.94 2.17
79 80 2.233922 CACAAGTACCACCTCGAGGATT 59.766 50.000 37.69 21.63 38.94 3.01
80 81 1.825474 CACAAGTACCACCTCGAGGAT 59.175 52.381 37.69 23.00 38.94 3.24
81 82 1.254026 CACAAGTACCACCTCGAGGA 58.746 55.000 37.69 12.96 38.94 3.71
82 83 0.389948 GCACAAGTACCACCTCGAGG 60.390 60.000 30.11 30.11 42.17 4.63
83 84 0.317160 TGCACAAGTACCACCTCGAG 59.683 55.000 5.13 5.13 0.00 4.04
84 85 0.032952 GTGCACAAGTACCACCTCGA 59.967 55.000 13.17 0.00 0.00 4.04
85 86 0.033504 AGTGCACAAGTACCACCTCG 59.966 55.000 21.04 0.00 0.00 4.63
86 87 1.070134 TCAGTGCACAAGTACCACCTC 59.930 52.381 21.04 0.00 0.00 3.85
87 88 1.070758 CTCAGTGCACAAGTACCACCT 59.929 52.381 21.04 0.00 0.00 4.00
88 89 1.512926 CTCAGTGCACAAGTACCACC 58.487 55.000 21.04 0.00 0.00 4.61
89 90 1.070134 TCCTCAGTGCACAAGTACCAC 59.930 52.381 21.04 0.00 0.00 4.16
90 91 1.070134 GTCCTCAGTGCACAAGTACCA 59.930 52.381 21.04 0.00 0.00 3.25
91 92 1.608283 GGTCCTCAGTGCACAAGTACC 60.608 57.143 21.04 17.48 0.00 3.34
92 93 1.344763 AGGTCCTCAGTGCACAAGTAC 59.655 52.381 21.04 12.48 0.00 2.73
93 94 1.344438 CAGGTCCTCAGTGCACAAGTA 59.656 52.381 21.04 0.00 0.00 2.24
94 95 0.107456 CAGGTCCTCAGTGCACAAGT 59.893 55.000 21.04 0.00 0.00 3.16
95 96 0.107456 ACAGGTCCTCAGTGCACAAG 59.893 55.000 21.04 15.42 0.00 3.16
96 97 0.179048 CACAGGTCCTCAGTGCACAA 60.179 55.000 21.04 5.64 0.00 3.33
97 98 1.447217 CACAGGTCCTCAGTGCACA 59.553 57.895 21.04 0.00 0.00 4.57
98 99 4.368391 CACAGGTCCTCAGTGCAC 57.632 61.111 9.40 9.40 0.00 4.57
101 102 2.047844 CGGCACAGGTCCTCAGTG 60.048 66.667 5.20 5.20 36.39 3.66
102 103 4.008933 GCGGCACAGGTCCTCAGT 62.009 66.667 0.00 0.00 0.00 3.41
115 116 3.737172 AACTTGACATGCCGCGGC 61.737 61.111 42.35 42.35 42.35 6.53
116 117 2.176546 CAACTTGACATGCCGCGG 59.823 61.111 24.05 24.05 0.00 6.46
117 118 2.502510 GCAACTTGACATGCCGCG 60.503 61.111 0.00 0.00 36.56 6.46
118 119 1.730547 GTGCAACTTGACATGCCGC 60.731 57.895 0.00 0.00 41.87 6.53
119 120 1.081242 GGTGCAACTTGACATGCCG 60.081 57.895 0.00 0.00 41.87 5.69
120 121 1.081242 CGGTGCAACTTGACATGCC 60.081 57.895 0.00 0.00 41.87 4.40
121 122 0.385974 GTCGGTGCAACTTGACATGC 60.386 55.000 0.00 0.00 40.32 4.06
122 123 0.943673 TGTCGGTGCAACTTGACATG 59.056 50.000 8.23 0.00 43.49 3.21
123 124 1.603802 CTTGTCGGTGCAACTTGACAT 59.396 47.619 12.44 0.00 46.00 3.06
124 125 1.013596 CTTGTCGGTGCAACTTGACA 58.986 50.000 8.23 8.23 45.44 3.58
125 126 1.295792 TCTTGTCGGTGCAACTTGAC 58.704 50.000 0.00 0.87 40.75 3.18
126 127 2.143122 GATCTTGTCGGTGCAACTTGA 58.857 47.619 0.00 0.00 36.74 3.02
127 128 2.146342 AGATCTTGTCGGTGCAACTTG 58.854 47.619 0.00 0.00 36.74 3.16
128 129 2.417719 GAGATCTTGTCGGTGCAACTT 58.582 47.619 0.00 0.00 36.74 2.66
129 130 1.338200 GGAGATCTTGTCGGTGCAACT 60.338 52.381 0.00 0.00 36.74 3.16
130 131 1.079503 GGAGATCTTGTCGGTGCAAC 58.920 55.000 0.00 0.00 0.00 4.17
131 132 0.389817 CGGAGATCTTGTCGGTGCAA 60.390 55.000 0.00 0.00 0.00 4.08
132 133 1.215382 CGGAGATCTTGTCGGTGCA 59.785 57.895 0.00 0.00 0.00 4.57
133 134 2.167861 GCGGAGATCTTGTCGGTGC 61.168 63.158 0.00 0.00 0.00 5.01
134 135 1.519455 GGCGGAGATCTTGTCGGTG 60.519 63.158 0.00 0.00 0.00 4.94
135 136 2.893398 GGCGGAGATCTTGTCGGT 59.107 61.111 0.00 0.00 0.00 4.69
136 137 2.278857 CGGCGGAGATCTTGTCGG 60.279 66.667 13.30 0.35 0.00 4.79
137 138 2.956964 GCGGCGGAGATCTTGTCG 60.957 66.667 15.93 15.93 0.00 4.35
138 139 2.586357 GGCGGCGGAGATCTTGTC 60.586 66.667 9.78 0.00 0.00 3.18
139 140 4.514577 CGGCGGCGGAGATCTTGT 62.515 66.667 25.36 0.00 0.00 3.16
140 141 2.421877 ATACGGCGGCGGAGATCTTG 62.422 60.000 35.05 4.63 0.00 3.02
141 142 2.143594 GATACGGCGGCGGAGATCTT 62.144 60.000 35.05 12.00 0.00 2.40
142 143 2.597805 ATACGGCGGCGGAGATCT 60.598 61.111 35.05 15.72 0.00 2.75
143 144 2.126424 GATACGGCGGCGGAGATC 60.126 66.667 35.05 27.00 0.00 2.75
144 145 2.910479 TGATACGGCGGCGGAGAT 60.910 61.111 35.05 23.80 0.00 2.75
145 146 3.896133 GTGATACGGCGGCGGAGA 61.896 66.667 35.05 20.08 0.00 3.71
146 147 3.709880 TTGTGATACGGCGGCGGAG 62.710 63.158 35.05 8.73 0.00 4.63
147 148 3.709880 CTTGTGATACGGCGGCGGA 62.710 63.158 35.05 29.51 0.00 5.54
148 149 3.261951 CTTGTGATACGGCGGCGG 61.262 66.667 35.05 17.25 0.00 6.13
149 150 1.355796 TTTCTTGTGATACGGCGGCG 61.356 55.000 31.06 31.06 0.00 6.46
150 151 1.014352 ATTTCTTGTGATACGGCGGC 58.986 50.000 13.24 0.00 0.00 6.53
151 152 2.285602 CGAATTTCTTGTGATACGGCGG 60.286 50.000 13.24 0.00 0.00 6.13
152 153 2.845764 GCGAATTTCTTGTGATACGGCG 60.846 50.000 4.80 4.80 0.00 6.46
153 154 2.705154 GCGAATTTCTTGTGATACGGC 58.295 47.619 0.00 0.00 0.00 5.68
154 155 2.285602 CCGCGAATTTCTTGTGATACGG 60.286 50.000 8.23 0.00 0.00 4.02
155 156 2.845764 GCCGCGAATTTCTTGTGATACG 60.846 50.000 8.23 0.00 0.00 3.06
156 157 2.538939 GGCCGCGAATTTCTTGTGATAC 60.539 50.000 8.23 0.00 0.00 2.24
157 158 1.668751 GGCCGCGAATTTCTTGTGATA 59.331 47.619 8.23 0.00 0.00 2.15
158 159 0.451783 GGCCGCGAATTTCTTGTGAT 59.548 50.000 8.23 0.00 0.00 3.06
159 160 0.605319 AGGCCGCGAATTTCTTGTGA 60.605 50.000 8.23 0.00 0.00 3.58
160 161 0.179189 GAGGCCGCGAATTTCTTGTG 60.179 55.000 8.23 0.00 0.00 3.33
161 162 0.321653 AGAGGCCGCGAATTTCTTGT 60.322 50.000 8.23 0.00 0.00 3.16
162 163 0.097674 CAGAGGCCGCGAATTTCTTG 59.902 55.000 8.23 0.00 0.00 3.02
163 164 0.036388 TCAGAGGCCGCGAATTTCTT 60.036 50.000 8.23 0.00 0.00 2.52
164 165 0.741221 GTCAGAGGCCGCGAATTTCT 60.741 55.000 8.23 1.70 0.00 2.52
165 166 1.706287 GGTCAGAGGCCGCGAATTTC 61.706 60.000 8.23 0.00 0.00 2.17
166 167 1.745489 GGTCAGAGGCCGCGAATTT 60.745 57.895 8.23 0.00 0.00 1.82
167 168 2.125106 GGTCAGAGGCCGCGAATT 60.125 61.111 8.23 0.00 0.00 2.17
168 169 4.162690 GGGTCAGAGGCCGCGAAT 62.163 66.667 8.23 0.00 0.00 3.34
184 185 1.078708 GTGGTGATGTACGTGGGGG 60.079 63.158 0.00 0.00 0.00 5.40
185 186 1.078708 GGTGGTGATGTACGTGGGG 60.079 63.158 0.00 0.00 0.00 4.96
186 187 1.447140 CGGTGGTGATGTACGTGGG 60.447 63.158 0.00 0.00 0.00 4.61
187 188 2.098233 GCGGTGGTGATGTACGTGG 61.098 63.158 0.00 0.00 0.00 4.94
188 189 2.098233 GGCGGTGGTGATGTACGTG 61.098 63.158 0.00 0.00 0.00 4.49
189 190 2.102109 TTGGCGGTGGTGATGTACGT 62.102 55.000 0.00 0.00 0.00 3.57
190 191 1.374885 TTGGCGGTGGTGATGTACG 60.375 57.895 0.00 0.00 0.00 3.67
191 192 0.321298 AGTTGGCGGTGGTGATGTAC 60.321 55.000 0.00 0.00 0.00 2.90
192 193 0.321210 CAGTTGGCGGTGGTGATGTA 60.321 55.000 0.00 0.00 0.00 2.29
193 194 1.600636 CAGTTGGCGGTGGTGATGT 60.601 57.895 0.00 0.00 0.00 3.06
194 195 2.981560 GCAGTTGGCGGTGGTGATG 61.982 63.158 0.00 0.00 0.00 3.07
195 196 2.672996 GCAGTTGGCGGTGGTGAT 60.673 61.111 0.00 0.00 0.00 3.06
214 215 4.664677 ACGATATGGAGCGCCGGC 62.665 66.667 19.07 19.07 38.26 6.13
215 216 2.022129 GAACGATATGGAGCGCCGG 61.022 63.158 2.29 0.00 38.26 6.13
216 217 0.667487 ATGAACGATATGGAGCGCCG 60.667 55.000 2.29 0.00 38.26 6.46
217 218 1.071605 GATGAACGATATGGAGCGCC 58.928 55.000 2.29 0.00 38.26 6.53
218 219 0.710567 CGATGAACGATATGGAGCGC 59.289 55.000 0.00 0.00 45.77 5.92
219 220 2.051879 ACGATGAACGATATGGAGCG 57.948 50.000 0.00 0.00 45.77 5.03
220 221 2.917971 GCTACGATGAACGATATGGAGC 59.082 50.000 0.00 0.00 45.77 4.70
221 222 4.083271 TCTGCTACGATGAACGATATGGAG 60.083 45.833 0.00 0.00 45.77 3.86
222 223 3.818773 TCTGCTACGATGAACGATATGGA 59.181 43.478 0.00 0.00 45.77 3.41
223 224 4.160736 TCTGCTACGATGAACGATATGG 57.839 45.455 0.00 0.00 45.77 2.74
224 225 5.487552 GTTCTGCTACGATGAACGATATG 57.512 43.478 0.00 0.00 45.77 1.78
230 231 1.278238 CCCGTTCTGCTACGATGAAC 58.722 55.000 7.91 0.00 43.99 3.18
231 232 0.174845 CCCCGTTCTGCTACGATGAA 59.825 55.000 7.91 0.00 43.99 2.57
232 233 1.813859 CCCCGTTCTGCTACGATGA 59.186 57.895 7.91 0.00 43.99 2.92
233 234 1.883084 GCCCCGTTCTGCTACGATG 60.883 63.158 7.91 1.30 43.99 3.84
234 235 2.298158 CTGCCCCGTTCTGCTACGAT 62.298 60.000 7.91 0.00 43.99 3.73
235 236 2.992689 TGCCCCGTTCTGCTACGA 60.993 61.111 7.91 0.00 43.99 3.43
236 237 2.509336 CTGCCCCGTTCTGCTACG 60.509 66.667 0.00 0.00 41.06 3.51
237 238 1.972660 ATCCTGCCCCGTTCTGCTAC 61.973 60.000 0.00 0.00 0.00 3.58
238 239 1.689233 ATCCTGCCCCGTTCTGCTA 60.689 57.895 0.00 0.00 0.00 3.49
239 240 3.011517 ATCCTGCCCCGTTCTGCT 61.012 61.111 0.00 0.00 0.00 4.24
240 241 2.825836 CATCCTGCCCCGTTCTGC 60.826 66.667 0.00 0.00 0.00 4.26
241 242 2.825836 GCATCCTGCCCCGTTCTG 60.826 66.667 0.00 0.00 37.42 3.02
242 243 3.329889 TGCATCCTGCCCCGTTCT 61.330 61.111 0.00 0.00 44.23 3.01
243 244 2.825836 CTGCATCCTGCCCCGTTC 60.826 66.667 0.00 0.00 44.23 3.95
244 245 3.329889 TCTGCATCCTGCCCCGTT 61.330 61.111 0.00 0.00 44.23 4.44
245 246 4.101448 GTCTGCATCCTGCCCCGT 62.101 66.667 0.00 0.00 44.23 5.28
246 247 4.864334 GGTCTGCATCCTGCCCCG 62.864 72.222 0.00 0.00 44.23 5.73
247 248 3.412624 GAGGTCTGCATCCTGCCCC 62.413 68.421 14.12 0.00 44.23 5.80
248 249 2.191641 GAGGTCTGCATCCTGCCC 59.808 66.667 14.12 0.00 44.23 5.36
249 250 2.191641 GGAGGTCTGCATCCTGCC 59.808 66.667 14.12 11.20 44.23 4.85
250 251 1.451028 GTGGAGGTCTGCATCCTGC 60.451 63.158 18.07 18.07 45.21 4.85
251 252 1.222936 GGTGGAGGTCTGCATCCTG 59.777 63.158 14.12 0.00 45.21 3.86
252 253 2.362369 CGGTGGAGGTCTGCATCCT 61.362 63.158 9.87 9.87 45.21 3.24
253 254 2.187946 CGGTGGAGGTCTGCATCC 59.812 66.667 0.00 0.00 45.20 3.51
254 255 1.153549 GTCGGTGGAGGTCTGCATC 60.154 63.158 0.00 0.00 32.40 3.91
255 256 2.982130 GTCGGTGGAGGTCTGCAT 59.018 61.111 0.00 0.00 32.40 3.96
256 257 3.680786 CGTCGGTGGAGGTCTGCA 61.681 66.667 0.00 0.00 0.00 4.41
257 258 4.436998 CCGTCGGTGGAGGTCTGC 62.437 72.222 2.08 0.00 0.00 4.26
258 259 4.436998 GCCGTCGGTGGAGGTCTG 62.437 72.222 13.94 0.00 0.00 3.51
286 287 3.248446 TTCCTCCCGCTGTTTCCGG 62.248 63.158 0.00 0.00 45.17 5.14
287 288 1.741770 CTTCCTCCCGCTGTTTCCG 60.742 63.158 0.00 0.00 0.00 4.30
288 289 0.250770 AACTTCCTCCCGCTGTTTCC 60.251 55.000 0.00 0.00 0.00 3.13
289 290 0.875059 CAACTTCCTCCCGCTGTTTC 59.125 55.000 0.00 0.00 0.00 2.78
290 291 0.537371 CCAACTTCCTCCCGCTGTTT 60.537 55.000 0.00 0.00 0.00 2.83
291 292 1.073199 CCAACTTCCTCCCGCTGTT 59.927 57.895 0.00 0.00 0.00 3.16
292 293 2.750350 CCAACTTCCTCCCGCTGT 59.250 61.111 0.00 0.00 0.00 4.40
293 294 2.045926 CCCAACTTCCTCCCGCTG 60.046 66.667 0.00 0.00 0.00 5.18
294 295 4.035102 GCCCAACTTCCTCCCGCT 62.035 66.667 0.00 0.00 0.00 5.52
297 298 4.344865 TGCGCCCAACTTCCTCCC 62.345 66.667 4.18 0.00 0.00 4.30
298 299 3.056328 GTGCGCCCAACTTCCTCC 61.056 66.667 4.18 0.00 0.00 4.30
299 300 3.056328 GGTGCGCCCAACTTCCTC 61.056 66.667 4.45 0.00 0.00 3.71
300 301 3.570212 AGGTGCGCCCAACTTCCT 61.570 61.111 14.07 5.04 34.69 3.36
301 302 3.365265 CAGGTGCGCCCAACTTCC 61.365 66.667 14.07 3.01 36.71 3.46
302 303 3.365265 CCAGGTGCGCCCAACTTC 61.365 66.667 14.07 0.00 36.71 3.01
344 345 2.115910 TTGTTGGAGCCTGGGCAG 59.884 61.111 14.39 0.00 44.88 4.85
345 346 2.203480 GTTGTTGGAGCCTGGGCA 60.203 61.111 14.39 0.00 44.88 5.36
346 347 1.832167 TTGTTGTTGGAGCCTGGGC 60.832 57.895 3.00 3.00 42.33 5.36
347 348 1.463553 GGTTGTTGTTGGAGCCTGGG 61.464 60.000 0.00 0.00 0.00 4.45
348 349 0.468029 AGGTTGTTGTTGGAGCCTGG 60.468 55.000 0.00 0.00 0.00 4.45
349 350 0.954452 GAGGTTGTTGTTGGAGCCTG 59.046 55.000 0.00 0.00 0.00 4.85
350 351 0.178990 GGAGGTTGTTGTTGGAGCCT 60.179 55.000 0.00 0.00 0.00 4.58
351 352 1.179174 GGGAGGTTGTTGTTGGAGCC 61.179 60.000 0.00 0.00 0.00 4.70
352 353 1.179174 GGGGAGGTTGTTGTTGGAGC 61.179 60.000 0.00 0.00 0.00 4.70
353 354 0.539669 GGGGGAGGTTGTTGTTGGAG 60.540 60.000 0.00 0.00 0.00 3.86
354 355 1.539665 GGGGGAGGTTGTTGTTGGA 59.460 57.895 0.00 0.00 0.00 3.53
355 356 4.191243 GGGGGAGGTTGTTGTTGG 57.809 61.111 0.00 0.00 0.00 3.77
374 375 3.378399 GAAGAGGCAGGCTCGGGAC 62.378 68.421 17.90 7.51 0.00 4.46
375 376 3.077556 GAAGAGGCAGGCTCGGGA 61.078 66.667 17.90 0.00 0.00 5.14
376 377 4.521062 CGAAGAGGCAGGCTCGGG 62.521 72.222 17.90 7.82 0.00 5.14
394 395 2.110967 CATCTTGCAGAGCCGGTGG 61.111 63.158 1.90 0.00 0.00 4.61
395 396 0.463295 ATCATCTTGCAGAGCCGGTG 60.463 55.000 1.90 0.00 0.00 4.94
396 397 0.463295 CATCATCTTGCAGAGCCGGT 60.463 55.000 1.90 0.00 0.00 5.28
397 398 0.179065 TCATCATCTTGCAGAGCCGG 60.179 55.000 0.00 0.00 0.00 6.13
398 399 0.935898 GTCATCATCTTGCAGAGCCG 59.064 55.000 0.00 0.00 0.00 5.52
399 400 2.034104 TGTCATCATCTTGCAGAGCC 57.966 50.000 0.00 0.00 0.00 4.70
400 401 4.815308 AGTTATGTCATCATCTTGCAGAGC 59.185 41.667 0.00 0.00 35.70 4.09
401 402 5.816258 ACAGTTATGTCATCATCTTGCAGAG 59.184 40.000 0.00 0.00 32.99 3.35
402 403 5.737860 ACAGTTATGTCATCATCTTGCAGA 58.262 37.500 0.00 0.00 32.99 4.26
420 421 1.125633 ACCACCCGTAGTTGACAGTT 58.874 50.000 0.00 0.00 0.00 3.16
480 485 8.324567 GCACGTGAACATTTCTTTTCATAAAAA 58.675 29.630 22.23 0.00 34.34 1.94
501 516 4.332543 ACAATCATCGTTATGAATGCACGT 59.667 37.500 0.00 0.00 43.88 4.49
502 517 4.836455 ACAATCATCGTTATGAATGCACG 58.164 39.130 0.00 0.00 43.88 5.34
511 526 5.061684 CACACACACGTACAATCATCGTTAT 59.938 40.000 0.00 0.00 35.62 1.89
526 541 0.111878 CGCTTACGAACACACACACG 60.112 55.000 0.00 0.00 43.93 4.49
538 553 1.071698 GGTATAACGCAAGCGCTTACG 60.072 52.381 34.61 34.61 44.19 3.18
606 621 1.175983 TGACAAATGGGACCCGCAAC 61.176 55.000 5.91 0.00 0.00 4.17
638 653 4.946772 TGTTGACTTCCACTGAATTTGACA 59.053 37.500 0.00 0.00 0.00 3.58
686 705 1.863662 GACCACGCGAGGACTCTTGA 61.864 60.000 29.67 0.00 0.00 3.02
754 783 2.702788 TTGCGTCCGGACTGCGATA 61.703 57.895 31.48 22.08 34.99 2.92
766 796 2.851824 CTGGTTTGTTTCTTGTTGCGTC 59.148 45.455 0.00 0.00 0.00 5.19
870 901 2.522193 TTTGTTTGGGTCCGGGGC 60.522 61.111 0.00 0.00 0.00 5.80
1053 1085 0.980423 GCTCCTGGAGTTCTTCCTGT 59.020 55.000 23.92 0.00 46.92 4.00
1437 1541 9.770097 CTGTGATGTATCTTACTCCAATGTAAT 57.230 33.333 0.00 0.00 32.76 1.89
1443 1547 8.078060 TGAATCTGTGATGTATCTTACTCCAA 57.922 34.615 0.00 0.00 0.00 3.53
1536 1640 5.857822 AGGAACGTATTTCTTTGTACAGC 57.142 39.130 0.00 0.00 34.26 4.40
1626 1730 5.930837 AAAATCAGTGGAACCTTTTGTCA 57.069 34.783 0.00 0.00 37.80 3.58
1959 2110 7.899841 CGTATCACAACAACATCTGTTATTCTG 59.100 37.037 0.00 0.00 46.91 3.02
2144 2295 7.329471 CCCATATCATAGGATTATATTGTCGCG 59.671 40.741 0.00 0.00 34.89 5.87
2355 2515 6.452242 TGTATTCACGTGATCATACCCATAC 58.548 40.000 26.31 22.67 0.00 2.39
2361 2521 7.161829 ACGATTTGTATTCACGTGATCATAC 57.838 36.000 24.18 24.18 35.91 2.39
2370 2530 4.087930 GCACCAAAACGATTTGTATTCACG 59.912 41.667 15.81 2.81 43.59 4.35
2425 2585 7.587629 TGTTGCTCTTTTATGTCTTCAATCAG 58.412 34.615 0.00 0.00 0.00 2.90
2441 2601 2.224548 GGTAGGTCCACTTGTTGCTCTT 60.225 50.000 0.00 0.00 35.97 2.85
2585 2775 3.576982 ACTTACTCCATGACTCGTCCAAA 59.423 43.478 0.00 0.00 0.00 3.28
2588 2778 5.517322 AATACTTACTCCATGACTCGTCC 57.483 43.478 0.00 0.00 0.00 4.79
2589 2779 7.829378 AAAAATACTTACTCCATGACTCGTC 57.171 36.000 0.00 0.00 0.00 4.20
2679 2895 6.044512 ACTTCGTTTGCACTTAACACTAAG 57.955 37.500 1.03 3.73 40.46 2.18
2686 2949 6.380095 AATGGTTACTTCGTTTGCACTTAA 57.620 33.333 0.00 0.00 0.00 1.85
2787 3250 6.230472 TCATTCCATTCGGATATACCTTGTG 58.770 40.000 0.00 0.00 42.41 3.33
2953 3934 4.757149 ACTGTTGGATGAAGCAGTTAAGAC 59.243 41.667 0.00 0.00 38.86 3.01
2955 3936 4.756642 TGACTGTTGGATGAAGCAGTTAAG 59.243 41.667 0.00 0.00 41.59 1.85
2966 3947 8.267620 TCACTATACAAATTGACTGTTGGATG 57.732 34.615 0.00 0.00 30.76 3.51
3017 3998 3.499918 CCAGGTCTGTCTCAATCAAACAC 59.500 47.826 0.00 0.00 0.00 3.32
3110 4179 6.916387 GGGATTTTATTTCTAAACGGCTTAGC 59.084 38.462 0.00 0.00 37.51 3.09
3111 4180 7.992008 TGGGATTTTATTTCTAAACGGCTTAG 58.008 34.615 1.20 1.20 38.76 2.18
3113 4182 6.661805 TCTGGGATTTTATTTCTAAACGGCTT 59.338 34.615 0.00 0.00 0.00 4.35
3132 4210 9.474313 AACTTATAAACAAATAGCAATCTGGGA 57.526 29.630 0.00 0.00 0.00 4.37
3192 4270 9.806203 TTAGCATGGATTTCTGTTATTGAATTG 57.194 29.630 0.00 0.00 0.00 2.32
3285 4364 2.819608 AGCAGTTTCAATACGGCAACAT 59.180 40.909 0.00 0.00 40.94 2.71
3295 4375 7.161773 ACATGCAAAGTATAGCAGTTTCAAT 57.838 32.000 0.00 0.00 44.94 2.57
3297 4377 6.573664 AACATGCAAAGTATAGCAGTTTCA 57.426 33.333 0.00 0.00 44.94 2.69
3298 4378 7.752695 AGTAACATGCAAAGTATAGCAGTTTC 58.247 34.615 0.00 0.00 44.94 2.78
3299 4379 7.687941 AGTAACATGCAAAGTATAGCAGTTT 57.312 32.000 0.00 0.00 44.94 2.66
3300 4380 7.687941 AAGTAACATGCAAAGTATAGCAGTT 57.312 32.000 0.00 0.00 44.94 3.16
3302 4382 6.470235 GCAAAGTAACATGCAAAGTATAGCAG 59.530 38.462 0.00 0.00 44.94 4.24
3303 4383 6.321717 GCAAAGTAACATGCAAAGTATAGCA 58.678 36.000 0.00 0.00 45.92 3.49
3304 4384 6.796629 GCAAAGTAACATGCAAAGTATAGC 57.203 37.500 0.00 0.00 42.12 2.97
3341 4421 1.335597 TGCTAGTCAGTGTGCACGTAC 60.336 52.381 13.13 5.72 36.20 3.67
3422 4502 6.702449 TGTTATGGCATCCATCCTTATAGT 57.298 37.500 1.65 0.00 40.74 2.12
3496 4578 3.096092 TGCCCCGCTTTTCTCATAATTT 58.904 40.909 0.00 0.00 0.00 1.82
3697 5066 9.499369 ACCAGAAAGCTGATAGGATATGTATAT 57.501 33.333 0.00 0.00 45.17 0.86
4034 5403 6.799926 AACAAAATAACCATGCATGAAACC 57.200 33.333 28.31 0.00 0.00 3.27
4072 5441 2.475187 CGCATGAAGCTCACAAACTAGC 60.475 50.000 0.00 0.00 42.61 3.42
4073 5442 2.475187 GCGCATGAAGCTCACAAACTAG 60.475 50.000 0.30 0.00 42.61 2.57
4074 5443 1.464608 GCGCATGAAGCTCACAAACTA 59.535 47.619 0.30 0.00 42.61 2.24
4075 5444 0.239347 GCGCATGAAGCTCACAAACT 59.761 50.000 0.30 0.00 42.61 2.66
4080 5450 1.018226 ACTCAGCGCATGAAGCTCAC 61.018 55.000 11.47 0.00 44.06 3.51
4089 5459 0.742281 GATGTCACCACTCAGCGCAT 60.742 55.000 11.47 0.00 0.00 4.73
4113 5483 3.259064 TGCCTACGCATCTGACTAAAAC 58.741 45.455 0.00 0.00 41.12 2.43
4188 5558 2.044492 ACATCCACTCCCAGAGTCCTAA 59.956 50.000 0.00 0.00 41.37 2.69
4334 5704 9.088987 TCATAAGCCATTCCCTTAATTATTTCC 57.911 33.333 0.00 0.00 0.00 3.13
4339 5709 8.275187 TCTCTCATAAGCCATTCCCTTAATTA 57.725 34.615 0.00 0.00 0.00 1.40
4378 5748 6.331369 TCTTTGGTTTCTTTCATAAGCCAG 57.669 37.500 0.00 0.00 38.28 4.85
4464 5834 8.317679 TGTAACTACGTAGGCCCTAAATAAAAA 58.682 33.333 25.63 0.00 0.00 1.94
4482 5852 8.853345 CAAATTTGACTTGCATCATGTAACTAC 58.147 33.333 13.08 0.00 0.00 2.73
4505 5875 9.738832 GGCACTGTAGTTTTTAATTACTTCAAA 57.261 29.630 0.00 0.00 0.00 2.69
4506 5876 8.904834 TGGCACTGTAGTTTTTAATTACTTCAA 58.095 29.630 0.00 0.00 0.00 2.69
4517 5887 2.361789 ACACGTGGCACTGTAGTTTTT 58.638 42.857 21.57 0.00 0.00 1.94
4533 5903 5.334569 CCCTTGGACATACAAAGTTTACACG 60.335 44.000 0.00 0.00 0.00 4.49
4537 5907 6.834451 TCAAACCCTTGGACATACAAAGTTTA 59.166 34.615 4.97 0.00 36.00 2.01
4544 5914 3.866703 TGTCAAACCCTTGGACATACA 57.133 42.857 0.00 0.00 33.01 2.29
4551 5995 4.620982 GAATGAAGTTGTCAAACCCTTGG 58.379 43.478 0.00 0.00 40.50 3.61
4552 5996 4.290155 CGAATGAAGTTGTCAAACCCTTG 58.710 43.478 0.00 0.00 40.50 3.61
4572 6016 1.981256 AAGCCTCTTCCTTTTTGCGA 58.019 45.000 0.00 0.00 0.00 5.10
4582 6026 4.290969 GCAACAAGTTACAAAGCCTCTTC 58.709 43.478 0.00 0.00 0.00 2.87
4585 6029 3.013276 GGCAACAAGTTACAAAGCCTC 57.987 47.619 0.00 0.00 37.67 4.70
4616 6060 1.564348 GGAGGGGATGTGGCTTAAAGA 59.436 52.381 0.00 0.00 0.00 2.52
4624 6068 1.225704 GAAGCAGGAGGGGATGTGG 59.774 63.158 0.00 0.00 0.00 4.17
4629 6073 1.870941 TACGAGGAAGCAGGAGGGGA 61.871 60.000 0.00 0.00 0.00 4.81
4630 6074 0.976073 TTACGAGGAAGCAGGAGGGG 60.976 60.000 0.00 0.00 0.00 4.79
4632 6076 1.475403 TCTTACGAGGAAGCAGGAGG 58.525 55.000 0.00 0.00 0.00 4.30
4640 6105 6.211515 GTGAAACTGTACTTCTTACGAGGAA 58.788 40.000 0.00 0.00 32.71 3.36
4694 6161 2.821969 AGCTTGGGTTGAATTGTAGCTG 59.178 45.455 0.00 0.00 36.25 4.24
4703 6170 0.827507 GCTGGGAAGCTTGGGTTGAA 60.828 55.000 2.10 0.00 0.00 2.69
4704 6171 1.228552 GCTGGGAAGCTTGGGTTGA 60.229 57.895 2.10 0.00 0.00 3.18
4705 6172 2.278330 GGCTGGGAAGCTTGGGTTG 61.278 63.158 2.10 0.00 34.73 3.77
4706 6173 2.118294 GGCTGGGAAGCTTGGGTT 59.882 61.111 2.10 0.00 34.73 4.11
4707 6174 4.351054 CGGCTGGGAAGCTTGGGT 62.351 66.667 2.10 0.00 34.73 4.51
4708 6175 3.868200 AACGGCTGGGAAGCTTGGG 62.868 63.158 2.10 0.00 34.73 4.12
4709 6176 2.282462 AACGGCTGGGAAGCTTGG 60.282 61.111 2.10 0.00 34.73 3.61
4710 6177 1.301677 GAGAACGGCTGGGAAGCTTG 61.302 60.000 2.10 0.00 34.73 4.01
4711 6178 1.003233 GAGAACGGCTGGGAAGCTT 60.003 57.895 0.00 0.00 34.73 3.74
4730 6197 1.825474 TCTAAACAGGGAAGCTCGAGG 59.175 52.381 15.58 0.00 0.00 4.63
4734 6201 6.127703 GGGTATTTTTCTAAACAGGGAAGCTC 60.128 42.308 0.00 0.00 0.00 4.09
4748 6215 9.508642 CTTCAGTTTCTCTAAGGGTATTTTTCT 57.491 33.333 0.00 0.00 0.00 2.52
4749 6216 9.503399 TCTTCAGTTTCTCTAAGGGTATTTTTC 57.497 33.333 0.00 0.00 0.00 2.29
4750 6217 9.286170 GTCTTCAGTTTCTCTAAGGGTATTTTT 57.714 33.333 0.00 0.00 0.00 1.94
4751 6218 8.437575 TGTCTTCAGTTTCTCTAAGGGTATTTT 58.562 33.333 0.00 0.00 0.00 1.82
4752 6219 7.974504 TGTCTTCAGTTTCTCTAAGGGTATTT 58.025 34.615 0.00 0.00 0.00 1.40
4753 6220 7.554959 TGTCTTCAGTTTCTCTAAGGGTATT 57.445 36.000 0.00 0.00 0.00 1.89
4754 6221 7.016268 TGTTGTCTTCAGTTTCTCTAAGGGTAT 59.984 37.037 0.00 0.00 0.00 2.73
4755 6222 6.325545 TGTTGTCTTCAGTTTCTCTAAGGGTA 59.674 38.462 0.00 0.00 0.00 3.69
4756 6223 5.130477 TGTTGTCTTCAGTTTCTCTAAGGGT 59.870 40.000 0.00 0.00 0.00 4.34
4757 6224 5.611374 TGTTGTCTTCAGTTTCTCTAAGGG 58.389 41.667 0.00 0.00 0.00 3.95
4758 6225 7.158021 AGATGTTGTCTTCAGTTTCTCTAAGG 58.842 38.462 0.00 0.00 31.47 2.69
4759 6226 8.600449 AAGATGTTGTCTTCAGTTTCTCTAAG 57.400 34.615 0.00 0.00 43.74 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.