Multiple sequence alignment - TraesCS5D01G414800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G414800 chr5D 100.000 2561 0 0 1 2561 477298007 477295447 0.000000e+00 4730
1 TraesCS5D01G414800 chr5A 94.067 1736 75 9 473 2187 596487763 596486035 0.000000e+00 2610
2 TraesCS5D01G414800 chr5A 90.137 365 12 5 20 368 596488123 596487767 1.080000e-123 453
3 TraesCS5D01G414800 chr5B 95.105 1573 45 9 275 1826 584868042 584866481 0.000000e+00 2449
4 TraesCS5D01G414800 chr5B 96.552 261 9 0 20 280 584868482 584868222 1.410000e-117 433
5 TraesCS5D01G414800 chr5B 91.593 226 18 1 2029 2254 584863743 584863519 6.880000e-81 311
6 TraesCS5D01G414800 chr5B 94.697 132 7 0 1864 1995 584865372 584865241 3.340000e-49 206
7 TraesCS5D01G414800 chr2D 82.486 354 52 6 2199 2548 82887744 82888091 4.140000e-78 302
8 TraesCS5D01G414800 chr3A 77.778 252 46 8 1309 1558 534478435 534478678 2.050000e-31 147
9 TraesCS5D01G414800 chr3D 83.436 163 20 7 2209 2368 610111303 610111461 7.390000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G414800 chr5D 477295447 477298007 2560 True 4730.00 4730 100.00000 1 2561 1 chr5D.!!$R1 2560
1 TraesCS5D01G414800 chr5A 596486035 596488123 2088 True 1531.50 2610 92.10200 20 2187 2 chr5A.!!$R1 2167
2 TraesCS5D01G414800 chr5B 584863519 584868482 4963 True 849.75 2449 94.48675 20 2254 4 chr5B.!!$R1 2234

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 748 0.4546 TGCATCGTCCTAACCTCGTC 59.545 55.0 0.0 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2410 5208 0.030369 AGACGTCGTCACTTCACCAC 59.97 55.0 26.17 0.0 34.6 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 97 2.609427 TAAGCAGCAGCATCTAGTGG 57.391 50.000 3.17 0.00 45.49 4.00
236 239 7.255381 CCATCGCATTAGAATTTCAGATTTCCT 60.255 37.037 0.00 0.00 0.00 3.36
240 243 6.478016 GCATTAGAATTTCAGATTTCCTTGCC 59.522 38.462 0.00 0.00 0.00 4.52
451 653 6.836007 AGTTCACATCCAGATACTATCACTGA 59.164 38.462 0.00 0.00 34.07 3.41
452 654 7.343057 AGTTCACATCCAGATACTATCACTGAA 59.657 37.037 0.00 0.00 34.07 3.02
453 655 7.043961 TCACATCCAGATACTATCACTGAAC 57.956 40.000 0.00 0.00 34.07 3.18
454 656 6.040955 TCACATCCAGATACTATCACTGAACC 59.959 42.308 0.00 0.00 34.07 3.62
455 657 6.041409 CACATCCAGATACTATCACTGAACCT 59.959 42.308 0.00 0.00 34.07 3.50
456 658 6.041409 ACATCCAGATACTATCACTGAACCTG 59.959 42.308 0.00 0.00 34.07 4.00
457 659 5.519808 TCCAGATACTATCACTGAACCTGT 58.480 41.667 0.00 0.00 34.07 4.00
458 660 6.669631 TCCAGATACTATCACTGAACCTGTA 58.330 40.000 0.00 0.00 34.07 2.74
459 661 7.123383 TCCAGATACTATCACTGAACCTGTAA 58.877 38.462 0.00 0.00 34.07 2.41
460 662 7.068348 TCCAGATACTATCACTGAACCTGTAAC 59.932 40.741 0.00 0.00 34.07 2.50
461 663 6.913132 CAGATACTATCACTGAACCTGTAACG 59.087 42.308 0.00 0.00 34.07 3.18
462 664 6.827251 AGATACTATCACTGAACCTGTAACGA 59.173 38.462 0.00 0.00 0.00 3.85
463 665 5.056894 ACTATCACTGAACCTGTAACGAC 57.943 43.478 0.00 0.00 0.00 4.34
464 666 4.521639 ACTATCACTGAACCTGTAACGACA 59.478 41.667 0.00 0.00 0.00 4.35
465 667 4.537135 ATCACTGAACCTGTAACGACAT 57.463 40.909 0.00 0.00 34.24 3.06
466 668 3.649073 TCACTGAACCTGTAACGACATG 58.351 45.455 0.00 0.00 34.24 3.21
467 669 3.069016 TCACTGAACCTGTAACGACATGT 59.931 43.478 0.00 0.00 36.13 3.21
468 670 4.278919 TCACTGAACCTGTAACGACATGTA 59.721 41.667 0.00 0.00 33.78 2.29
469 671 4.384846 CACTGAACCTGTAACGACATGTAC 59.615 45.833 0.00 0.00 33.78 2.90
470 672 4.038282 ACTGAACCTGTAACGACATGTACA 59.962 41.667 0.00 0.00 33.78 2.90
471 673 5.142061 TGAACCTGTAACGACATGTACAT 57.858 39.130 1.41 1.41 33.78 2.29
519 748 0.454600 TGCATCGTCCTAACCTCGTC 59.545 55.000 0.00 0.00 0.00 4.20
618 847 2.109128 TCTCAGTGGAAGGTGTCTCTCT 59.891 50.000 0.00 0.00 0.00 3.10
911 1140 2.112815 GGCTCGCGGCATACCTTTT 61.113 57.895 18.87 0.00 44.01 2.27
1230 1467 4.610714 GGGAAGATCTCCGGCGCC 62.611 72.222 19.07 19.07 46.51 6.53
1461 1698 3.842923 CTCGCCCAGCTCGGTGAT 61.843 66.667 14.34 0.00 41.52 3.06
1685 1934 2.602257 TGTCTCACAAGTGACACCAG 57.398 50.000 0.84 0.00 41.75 4.00
1696 1946 6.595326 CACAAGTGACACCAGTGTATAATGAT 59.405 38.462 16.02 0.00 45.05 2.45
1823 2073 8.424274 AAATGAGAAGTTCCATGAACAAAAAC 57.576 30.769 9.42 0.00 44.11 2.43
1850 2100 1.092921 TTTCACTGTGGTGCACCGTC 61.093 55.000 30.07 24.29 42.72 4.79
1869 3203 6.124088 CCGTCTGAAATTTTAGATGGGAAG 57.876 41.667 30.44 14.14 43.36 3.46
1881 3215 0.325671 ATGGGAAGAGCCGAAGAGGA 60.326 55.000 0.00 0.00 45.00 3.71
1925 3259 9.686683 AAGGCTGAATTAATAACACTGACTTAT 57.313 29.630 0.00 0.00 0.00 1.73
1937 3271 2.698855 TGACTTATCAGGAAGCTGCC 57.301 50.000 0.73 0.73 0.00 4.85
1987 3321 7.611467 CCCAGGCATATATACTATTGAAGCAAA 59.389 37.037 0.00 0.00 0.00 3.68
2004 3338 6.319658 TGAAGCAAAATTCAGACACTTTCTCT 59.680 34.615 0.00 0.00 34.31 3.10
2027 4825 6.761242 TCTCCCAAATCTTACACAATATCACG 59.239 38.462 0.00 0.00 0.00 4.35
2071 4869 5.946298 TGCATCACAATCATTCAGTTTCTC 58.054 37.500 0.00 0.00 0.00 2.87
2151 4949 1.021390 CCCGATGCCTTCTGTGACAC 61.021 60.000 0.00 0.00 0.00 3.67
2157 4955 1.137513 GCCTTCTGTGACACGTACAC 58.862 55.000 15.17 15.17 38.55 2.90
2170 4968 5.234757 TGACACGTACACACAAAACCTAATC 59.765 40.000 0.00 0.00 0.00 1.75
2250 5048 4.530857 CTCGGGCGGCAACTAGGG 62.531 72.222 12.47 0.00 0.00 3.53
2254 5052 2.044555 GGGCGGCAACTAGGGTTTC 61.045 63.158 12.47 0.00 32.73 2.78
2255 5053 2.044555 GGCGGCAACTAGGGTTTCC 61.045 63.158 3.07 0.00 35.81 3.13
2256 5054 1.002502 GCGGCAACTAGGGTTTCCT 60.003 57.895 0.00 0.00 46.96 3.36
2257 5055 1.025113 GCGGCAACTAGGGTTTCCTC 61.025 60.000 0.00 0.00 43.66 3.71
2258 5056 0.739813 CGGCAACTAGGGTTTCCTCG 60.740 60.000 0.00 0.00 43.66 4.63
2259 5057 1.025113 GGCAACTAGGGTTTCCTCGC 61.025 60.000 0.00 0.00 43.66 5.03
2260 5058 1.359459 GCAACTAGGGTTTCCTCGCG 61.359 60.000 0.00 0.00 43.66 5.87
2261 5059 1.079336 AACTAGGGTTTCCTCGCGC 60.079 57.895 0.00 0.00 43.66 6.86
2262 5060 2.202892 CTAGGGTTTCCTCGCGCC 60.203 66.667 0.00 0.00 43.66 6.53
2263 5061 4.137872 TAGGGTTTCCTCGCGCCG 62.138 66.667 0.00 0.00 43.66 6.46
2280 5078 4.097361 GCCACCCCGTTCCTCCTC 62.097 72.222 0.00 0.00 0.00 3.71
2281 5079 3.400054 CCACCCCGTTCCTCCTCC 61.400 72.222 0.00 0.00 0.00 4.30
2282 5080 2.284699 CACCCCGTTCCTCCTCCT 60.285 66.667 0.00 0.00 0.00 3.69
2283 5081 2.039137 ACCCCGTTCCTCCTCCTC 59.961 66.667 0.00 0.00 0.00 3.71
2284 5082 2.364961 CCCCGTTCCTCCTCCTCT 59.635 66.667 0.00 0.00 0.00 3.69
2285 5083 1.758906 CCCCGTTCCTCCTCCTCTC 60.759 68.421 0.00 0.00 0.00 3.20
2286 5084 1.308326 CCCGTTCCTCCTCCTCTCT 59.692 63.158 0.00 0.00 0.00 3.10
2287 5085 0.551879 CCCGTTCCTCCTCCTCTCTA 59.448 60.000 0.00 0.00 0.00 2.43
2288 5086 1.682740 CCGTTCCTCCTCCTCTCTAC 58.317 60.000 0.00 0.00 0.00 2.59
2289 5087 1.682740 CGTTCCTCCTCCTCTCTACC 58.317 60.000 0.00 0.00 0.00 3.18
2290 5088 1.213430 CGTTCCTCCTCCTCTCTACCT 59.787 57.143 0.00 0.00 0.00 3.08
2291 5089 2.747135 CGTTCCTCCTCCTCTCTACCTC 60.747 59.091 0.00 0.00 0.00 3.85
2292 5090 1.133363 TCCTCCTCCTCTCTACCTCG 58.867 60.000 0.00 0.00 0.00 4.63
2293 5091 0.536460 CCTCCTCCTCTCTACCTCGC 60.536 65.000 0.00 0.00 0.00 5.03
2294 5092 0.536460 CTCCTCCTCTCTACCTCGCC 60.536 65.000 0.00 0.00 0.00 5.54
2295 5093 1.894756 CCTCCTCTCTACCTCGCCG 60.895 68.421 0.00 0.00 0.00 6.46
2296 5094 2.516460 TCCTCTCTACCTCGCCGC 60.516 66.667 0.00 0.00 0.00 6.53
2297 5095 3.597728 CCTCTCTACCTCGCCGCC 61.598 72.222 0.00 0.00 0.00 6.13
2298 5096 2.829003 CTCTCTACCTCGCCGCCA 60.829 66.667 0.00 0.00 0.00 5.69
2299 5097 3.127352 CTCTCTACCTCGCCGCCAC 62.127 68.421 0.00 0.00 0.00 5.01
2300 5098 4.208686 CTCTACCTCGCCGCCACC 62.209 72.222 0.00 0.00 0.00 4.61
2310 5108 4.410400 CCGCCACCCAAGGAGGTC 62.410 72.222 0.00 0.00 42.97 3.85
2311 5109 4.760047 CGCCACCCAAGGAGGTCG 62.760 72.222 0.00 0.25 38.39 4.79
2312 5110 3.637273 GCCACCCAAGGAGGTCGT 61.637 66.667 0.00 0.00 38.39 4.34
2313 5111 2.663196 CCACCCAAGGAGGTCGTC 59.337 66.667 0.00 0.00 38.39 4.20
2314 5112 2.261671 CACCCAAGGAGGTCGTCG 59.738 66.667 0.00 0.00 38.39 5.12
2315 5113 2.995574 ACCCAAGGAGGTCGTCGG 60.996 66.667 0.00 0.00 33.81 4.79
2316 5114 3.771160 CCCAAGGAGGTCGTCGGG 61.771 72.222 0.00 0.00 34.66 5.14
2317 5115 4.452733 CCAAGGAGGTCGTCGGGC 62.453 72.222 0.00 0.00 0.00 6.13
2318 5116 3.691342 CAAGGAGGTCGTCGGGCA 61.691 66.667 0.00 0.00 0.00 5.36
2319 5117 2.920912 AAGGAGGTCGTCGGGCAA 60.921 61.111 0.00 0.00 0.00 4.52
2320 5118 2.943978 AAGGAGGTCGTCGGGCAAG 61.944 63.158 0.00 0.00 0.00 4.01
2368 5166 4.699522 GGACCTTGCCGCTCCGTT 62.700 66.667 0.00 0.00 0.00 4.44
2369 5167 2.668550 GACCTTGCCGCTCCGTTT 60.669 61.111 0.00 0.00 0.00 3.60
2370 5168 2.668550 ACCTTGCCGCTCCGTTTC 60.669 61.111 0.00 0.00 0.00 2.78
2371 5169 2.358737 CCTTGCCGCTCCGTTTCT 60.359 61.111 0.00 0.00 0.00 2.52
2372 5170 2.391389 CCTTGCCGCTCCGTTTCTC 61.391 63.158 0.00 0.00 0.00 2.87
2373 5171 1.374758 CTTGCCGCTCCGTTTCTCT 60.375 57.895 0.00 0.00 0.00 3.10
2374 5172 1.355066 CTTGCCGCTCCGTTTCTCTC 61.355 60.000 0.00 0.00 0.00 3.20
2375 5173 2.881352 GCCGCTCCGTTTCTCTCG 60.881 66.667 0.00 0.00 0.00 4.04
2376 5174 2.881352 CCGCTCCGTTTCTCTCGC 60.881 66.667 0.00 0.00 0.00 5.03
2377 5175 3.241059 CGCTCCGTTTCTCTCGCG 61.241 66.667 0.00 0.00 34.50 5.87
2378 5176 2.881352 GCTCCGTTTCTCTCGCGG 60.881 66.667 6.13 0.00 46.12 6.46
2382 5180 2.202623 CGTTTCTCTCGCGGAGGG 60.203 66.667 19.88 10.95 42.10 4.30
2383 5181 2.509561 GTTTCTCTCGCGGAGGGC 60.510 66.667 19.88 9.93 42.10 5.19
2384 5182 2.994995 TTTCTCTCGCGGAGGGCA 60.995 61.111 19.88 0.06 43.84 5.36
2385 5183 3.006756 TTTCTCTCGCGGAGGGCAG 62.007 63.158 19.88 4.55 43.84 4.85
2421 5219 3.246112 CCCCGGGTGGTGAAGTGA 61.246 66.667 21.85 0.00 0.00 3.41
2422 5220 2.032071 CCCGGGTGGTGAAGTGAC 59.968 66.667 14.18 0.00 0.00 3.67
2423 5221 2.357034 CCGGGTGGTGAAGTGACG 60.357 66.667 0.00 0.00 0.00 4.35
2424 5222 2.732016 CGGGTGGTGAAGTGACGA 59.268 61.111 0.00 0.00 0.00 4.20
2425 5223 1.663702 CGGGTGGTGAAGTGACGAC 60.664 63.158 0.00 0.00 0.00 4.34
2426 5224 1.663702 GGGTGGTGAAGTGACGACG 60.664 63.158 0.00 0.00 0.00 5.12
2427 5225 1.066918 GGTGGTGAAGTGACGACGT 59.933 57.895 0.00 0.00 0.00 4.34
2428 5226 0.938168 GGTGGTGAAGTGACGACGTC 60.938 60.000 20.97 20.97 0.00 4.34
2429 5227 0.030369 GTGGTGAAGTGACGACGTCT 59.970 55.000 26.86 8.73 32.30 4.18
2430 5228 0.742505 TGGTGAAGTGACGACGTCTT 59.257 50.000 26.86 15.04 32.30 3.01
2431 5229 1.129326 GGTGAAGTGACGACGTCTTG 58.871 55.000 26.86 0.96 32.30 3.02
2432 5230 1.268896 GGTGAAGTGACGACGTCTTGA 60.269 52.381 26.86 7.25 32.30 3.02
2433 5231 1.779724 GTGAAGTGACGACGTCTTGAC 59.220 52.381 26.86 17.40 32.30 3.18
2434 5232 1.402613 TGAAGTGACGACGTCTTGACA 59.597 47.619 26.86 18.29 32.30 3.58
2435 5233 2.044860 GAAGTGACGACGTCTTGACAG 58.955 52.381 26.86 0.00 33.15 3.51
2436 5234 1.306148 AGTGACGACGTCTTGACAGA 58.694 50.000 26.86 3.71 33.15 3.41
2437 5235 1.674441 AGTGACGACGTCTTGACAGAA 59.326 47.619 26.86 2.95 33.15 3.02
2438 5236 2.044860 GTGACGACGTCTTGACAGAAG 58.955 52.381 26.86 0.00 34.85 2.85
2439 5237 1.001706 TGACGACGTCTTGACAGAAGG 60.002 52.381 26.86 0.00 33.08 3.46
2440 5238 0.318784 ACGACGTCTTGACAGAAGGC 60.319 55.000 14.70 0.00 33.33 4.35
2442 5240 4.655527 CGTCTTGACAGAAGGCGT 57.344 55.556 0.00 0.00 40.17 5.68
2443 5241 2.435741 CGTCTTGACAGAAGGCGTC 58.564 57.895 0.00 0.00 40.17 5.19
2444 5242 0.318699 CGTCTTGACAGAAGGCGTCA 60.319 55.000 2.69 0.00 40.17 4.35
2445 5243 1.423395 GTCTTGACAGAAGGCGTCAG 58.577 55.000 2.69 0.00 43.85 3.51
2446 5244 1.040646 TCTTGACAGAAGGCGTCAGT 58.959 50.000 2.69 0.00 43.85 3.41
2447 5245 1.000163 TCTTGACAGAAGGCGTCAGTC 60.000 52.381 16.72 16.72 43.85 3.51
2448 5246 0.318699 TTGACAGAAGGCGTCAGTCG 60.319 55.000 17.91 0.70 43.82 4.18
2449 5247 1.286260 GACAGAAGGCGTCAGTCGT 59.714 57.895 9.86 0.00 42.13 4.34
2450 5248 0.318784 GACAGAAGGCGTCAGTCGTT 60.319 55.000 9.86 0.00 42.13 3.85
2451 5249 0.597637 ACAGAAGGCGTCAGTCGTTG 60.598 55.000 2.69 0.00 42.13 4.10
2452 5250 1.006102 AGAAGGCGTCAGTCGTTGG 60.006 57.895 2.69 0.00 42.13 3.77
2453 5251 1.300697 GAAGGCGTCAGTCGTTGGT 60.301 57.895 0.00 0.00 42.13 3.67
2454 5252 1.557443 GAAGGCGTCAGTCGTTGGTG 61.557 60.000 0.00 0.00 42.13 4.17
2455 5253 3.712881 GGCGTCAGTCGTTGGTGC 61.713 66.667 0.00 0.00 42.13 5.01
2456 5254 2.661866 GCGTCAGTCGTTGGTGCT 60.662 61.111 0.00 0.00 42.13 4.40
2457 5255 1.372499 GCGTCAGTCGTTGGTGCTA 60.372 57.895 0.00 0.00 42.13 3.49
2458 5256 1.344942 GCGTCAGTCGTTGGTGCTAG 61.345 60.000 0.00 0.00 42.13 3.42
2459 5257 0.039437 CGTCAGTCGTTGGTGCTAGT 60.039 55.000 0.00 0.00 34.52 2.57
2460 5258 1.419374 GTCAGTCGTTGGTGCTAGTG 58.581 55.000 0.00 0.00 0.00 2.74
2461 5259 0.317160 TCAGTCGTTGGTGCTAGTGG 59.683 55.000 0.00 0.00 0.00 4.00
2462 5260 0.317160 CAGTCGTTGGTGCTAGTGGA 59.683 55.000 0.00 0.00 0.00 4.02
2463 5261 0.603569 AGTCGTTGGTGCTAGTGGAG 59.396 55.000 0.00 0.00 0.00 3.86
2464 5262 0.601558 GTCGTTGGTGCTAGTGGAGA 59.398 55.000 0.00 0.00 0.00 3.71
2465 5263 0.888619 TCGTTGGTGCTAGTGGAGAG 59.111 55.000 0.00 0.00 0.00 3.20
2466 5264 0.108615 CGTTGGTGCTAGTGGAGAGG 60.109 60.000 0.00 0.00 0.00 3.69
2467 5265 0.391793 GTTGGTGCTAGTGGAGAGGC 60.392 60.000 0.00 0.00 0.00 4.70
2468 5266 1.553690 TTGGTGCTAGTGGAGAGGCC 61.554 60.000 0.00 0.00 37.10 5.19
2469 5267 1.687493 GGTGCTAGTGGAGAGGCCT 60.687 63.158 3.86 3.86 37.63 5.19
2470 5268 1.681486 GGTGCTAGTGGAGAGGCCTC 61.681 65.000 26.22 26.22 38.70 4.70
2471 5269 0.686112 GTGCTAGTGGAGAGGCCTCT 60.686 60.000 35.74 35.74 42.83 3.69
2485 5283 3.764466 CTCTCAGCCGCTCGGGTT 61.764 66.667 10.57 0.00 44.52 4.11
2495 5293 4.394712 CTCGGGTTGCGAGGCCTT 62.395 66.667 6.77 0.00 0.00 4.35
2496 5294 4.697756 TCGGGTTGCGAGGCCTTG 62.698 66.667 16.53 16.53 0.00 3.61
2498 5296 4.660938 GGGTTGCGAGGCCTTGGT 62.661 66.667 22.06 0.00 0.00 3.67
2499 5297 3.365265 GGTTGCGAGGCCTTGGTG 61.365 66.667 22.06 6.51 0.00 4.17
2500 5298 3.365265 GTTGCGAGGCCTTGGTGG 61.365 66.667 22.06 3.37 39.35 4.61
2501 5299 3.884774 TTGCGAGGCCTTGGTGGT 61.885 61.111 22.06 0.00 38.35 4.16
2502 5300 3.429372 TTGCGAGGCCTTGGTGGTT 62.429 57.895 22.06 0.00 38.35 3.67
2503 5301 3.365265 GCGAGGCCTTGGTGGTTG 61.365 66.667 22.06 0.00 38.35 3.77
2504 5302 2.672996 CGAGGCCTTGGTGGTTGG 60.673 66.667 12.81 0.00 38.35 3.77
2505 5303 2.520968 GAGGCCTTGGTGGTTGGT 59.479 61.111 6.77 0.00 38.35 3.67
2506 5304 1.903404 GAGGCCTTGGTGGTTGGTG 60.903 63.158 6.77 0.00 38.35 4.17
2507 5305 2.917227 GGCCTTGGTGGTTGGTGG 60.917 66.667 0.00 0.00 38.35 4.61
2508 5306 3.615709 GCCTTGGTGGTTGGTGGC 61.616 66.667 0.00 0.00 38.35 5.01
2509 5307 2.123511 CCTTGGTGGTTGGTGGCA 60.124 61.111 0.00 0.00 0.00 4.92
2510 5308 2.202395 CCTTGGTGGTTGGTGGCAG 61.202 63.158 0.00 0.00 0.00 4.85
2511 5309 2.837291 TTGGTGGTTGGTGGCAGC 60.837 61.111 10.30 10.30 0.00 5.25
2535 5333 4.541213 AGGCCTTCCTCTTCGTCA 57.459 55.556 0.00 0.00 38.72 4.35
2536 5334 2.759985 AGGCCTTCCTCTTCGTCAA 58.240 52.632 0.00 0.00 38.72 3.18
2537 5335 1.056660 AGGCCTTCCTCTTCGTCAAA 58.943 50.000 0.00 0.00 38.72 2.69
2538 5336 1.630878 AGGCCTTCCTCTTCGTCAAAT 59.369 47.619 0.00 0.00 38.72 2.32
2539 5337 2.040412 AGGCCTTCCTCTTCGTCAAATT 59.960 45.455 0.00 0.00 38.72 1.82
2540 5338 2.820197 GGCCTTCCTCTTCGTCAAATTT 59.180 45.455 0.00 0.00 0.00 1.82
2541 5339 3.366374 GGCCTTCCTCTTCGTCAAATTTG 60.366 47.826 12.15 12.15 0.00 2.32
2542 5340 3.502211 GCCTTCCTCTTCGTCAAATTTGA 59.498 43.478 16.91 16.91 34.20 2.69
2543 5341 4.023193 GCCTTCCTCTTCGTCAAATTTGAA 60.023 41.667 22.07 5.45 39.21 2.69
2544 5342 5.693814 CCTTCCTCTTCGTCAAATTTGAAG 58.306 41.667 22.07 22.70 39.21 3.02
2545 5343 5.335191 CCTTCCTCTTCGTCAAATTTGAAGG 60.335 44.000 26.80 24.39 40.06 3.46
2546 5344 4.714632 TCCTCTTCGTCAAATTTGAAGGT 58.285 39.130 26.80 0.00 39.59 3.50
2547 5345 5.860611 TCCTCTTCGTCAAATTTGAAGGTA 58.139 37.500 26.80 17.15 39.59 3.08
2548 5346 5.699458 TCCTCTTCGTCAAATTTGAAGGTAC 59.301 40.000 26.80 13.63 39.59 3.34
2549 5347 5.389516 CCTCTTCGTCAAATTTGAAGGTACG 60.390 44.000 26.80 22.44 39.59 3.67
2550 5348 5.291178 TCTTCGTCAAATTTGAAGGTACGA 58.709 37.500 26.80 23.95 39.59 3.43
2551 5349 5.929992 TCTTCGTCAAATTTGAAGGTACGAT 59.070 36.000 26.80 0.00 39.59 3.73
2552 5350 7.092079 TCTTCGTCAAATTTGAAGGTACGATA 58.908 34.615 26.80 17.11 39.59 2.92
2553 5351 6.636666 TCGTCAAATTTGAAGGTACGATAC 57.363 37.500 26.80 10.60 39.21 2.24
2554 5352 5.577945 TCGTCAAATTTGAAGGTACGATACC 59.422 40.000 26.80 9.70 39.65 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.893137 TCGAAGCTTGCCACTAGAAGA 59.107 47.619 2.10 0.00 0.00 2.87
1 2 2.370281 TCGAAGCTTGCCACTAGAAG 57.630 50.000 2.10 0.00 0.00 2.85
2 3 2.621338 CATCGAAGCTTGCCACTAGAA 58.379 47.619 2.10 0.00 0.00 2.10
3 4 1.740380 GCATCGAAGCTTGCCACTAGA 60.740 52.381 2.10 0.00 31.73 2.43
4 5 0.654683 GCATCGAAGCTTGCCACTAG 59.345 55.000 2.10 0.00 31.73 2.57
5 6 1.083806 CGCATCGAAGCTTGCCACTA 61.084 55.000 2.10 0.00 33.81 2.74
6 7 2.393768 CGCATCGAAGCTTGCCACT 61.394 57.895 2.10 0.00 33.81 4.00
7 8 2.099062 CGCATCGAAGCTTGCCAC 59.901 61.111 2.10 0.00 33.81 5.01
8 9 3.126879 CCGCATCGAAGCTTGCCA 61.127 61.111 2.10 0.00 33.81 4.92
9 10 3.880846 CCCGCATCGAAGCTTGCC 61.881 66.667 2.10 0.00 33.81 4.52
10 11 2.398554 TTCCCGCATCGAAGCTTGC 61.399 57.895 2.10 0.00 33.98 4.01
11 12 1.425428 GTTCCCGCATCGAAGCTTG 59.575 57.895 2.10 1.59 0.00 4.01
12 13 1.745489 GGTTCCCGCATCGAAGCTT 60.745 57.895 11.27 0.00 35.38 3.74
13 14 2.125106 GGTTCCCGCATCGAAGCT 60.125 61.111 11.27 0.00 35.38 3.74
14 15 3.202706 GGGTTCCCGCATCGAAGC 61.203 66.667 1.73 1.73 37.08 3.86
15 16 0.748005 ATTGGGTTCCCGCATCGAAG 60.748 55.000 3.27 0.00 33.04 3.79
16 17 1.029408 CATTGGGTTCCCGCATCGAA 61.029 55.000 3.27 0.00 33.04 3.71
17 18 1.451207 CATTGGGTTCCCGCATCGA 60.451 57.895 3.27 0.00 33.04 3.59
18 19 0.819259 ATCATTGGGTTCCCGCATCG 60.819 55.000 3.27 0.00 33.04 3.84
94 97 3.203442 CCACCACATGGCAGATGC 58.797 61.111 0.00 0.00 43.24 3.91
240 243 0.404040 TCCTTACAGCAGTTTGGGGG 59.596 55.000 0.00 0.00 0.00 5.40
247 250 5.247110 TCAAAAGAGATCTCCTTACAGCAGT 59.753 40.000 19.30 0.00 0.00 4.40
252 255 8.597167 TGAGATTTCAAAAGAGATCTCCTTACA 58.403 33.333 19.30 0.25 42.31 2.41
453 655 4.807304 GGGTTATGTACATGTCGTTACAGG 59.193 45.833 18.81 0.00 43.03 4.00
454 656 5.412640 TGGGTTATGTACATGTCGTTACAG 58.587 41.667 18.81 0.00 39.49 2.74
455 657 5.402997 TGGGTTATGTACATGTCGTTACA 57.597 39.130 18.81 0.68 40.69 2.41
456 658 7.707893 ACTTATGGGTTATGTACATGTCGTTAC 59.292 37.037 18.81 0.00 0.00 2.50
457 659 7.784037 ACTTATGGGTTATGTACATGTCGTTA 58.216 34.615 18.81 1.24 0.00 3.18
458 660 6.646267 ACTTATGGGTTATGTACATGTCGTT 58.354 36.000 18.81 1.98 0.00 3.85
459 661 6.229936 ACTTATGGGTTATGTACATGTCGT 57.770 37.500 18.81 8.59 0.00 4.34
460 662 7.254658 GGAAACTTATGGGTTATGTACATGTCG 60.255 40.741 18.81 1.00 0.00 4.35
461 663 7.554835 TGGAAACTTATGGGTTATGTACATGTC 59.445 37.037 18.81 10.52 0.00 3.06
462 664 7.406916 TGGAAACTTATGGGTTATGTACATGT 58.593 34.615 18.81 2.69 0.00 3.21
463 665 7.556275 ACTGGAAACTTATGGGTTATGTACATG 59.444 37.037 18.81 0.64 0.00 3.21
464 666 7.639378 ACTGGAAACTTATGGGTTATGTACAT 58.361 34.615 13.93 13.93 0.00 2.29
465 667 7.023171 ACTGGAAACTTATGGGTTATGTACA 57.977 36.000 0.00 0.00 0.00 2.90
466 668 9.623000 AATACTGGAAACTTATGGGTTATGTAC 57.377 33.333 0.00 0.00 0.00 2.90
467 669 9.841295 GAATACTGGAAACTTATGGGTTATGTA 57.159 33.333 0.00 0.00 0.00 2.29
468 670 7.497909 CGAATACTGGAAACTTATGGGTTATGT 59.502 37.037 0.00 0.00 0.00 2.29
469 671 7.713507 TCGAATACTGGAAACTTATGGGTTATG 59.286 37.037 0.00 0.00 0.00 1.90
470 672 7.798071 TCGAATACTGGAAACTTATGGGTTAT 58.202 34.615 0.00 0.00 0.00 1.89
471 673 7.185318 TCGAATACTGGAAACTTATGGGTTA 57.815 36.000 0.00 0.00 0.00 2.85
585 814 6.937465 ACCTTCCACTGAGAATTTTAACTCTC 59.063 38.462 0.00 0.00 38.87 3.20
618 847 1.409064 AGTTCAGCGACTGACAACTGA 59.591 47.619 8.73 0.00 40.46 3.41
911 1140 1.246056 GCCAATGCAGCTGTGGAAGA 61.246 55.000 22.51 0.00 37.47 2.87
1029 1266 4.388499 TTCCCCGTCAGGCGCTTC 62.388 66.667 7.64 0.00 39.71 3.86
1586 1835 3.819902 TGCAATGCAGAGTATGAACAACA 59.180 39.130 2.72 0.00 33.32 3.33
1850 2100 5.220931 CGGCTCTTCCCATCTAAAATTTCAG 60.221 44.000 0.00 0.00 0.00 3.02
1869 3203 0.968393 AGACCAGTCCTCTTCGGCTC 60.968 60.000 0.00 0.00 0.00 4.70
1881 3215 2.836981 CCTTCCAGATGAGAAGACCAGT 59.163 50.000 10.70 0.00 42.80 4.00
1925 3259 1.903877 GCTACCTGGCAGCTTCCTGA 61.904 60.000 11.76 0.00 41.77 3.86
1937 3271 6.037610 GGATTCTGTAAATGTTGAGCTACCTG 59.962 42.308 0.00 0.00 0.00 4.00
1987 3321 4.982241 TGGGAGAGAAAGTGTCTGAATT 57.018 40.909 0.00 0.00 36.41 2.17
1995 3329 5.997746 TGTGTAAGATTTGGGAGAGAAAGTG 59.002 40.000 0.00 0.00 0.00 3.16
2004 3338 6.645306 TCGTGATATTGTGTAAGATTTGGGA 58.355 36.000 0.00 0.00 0.00 4.37
2151 4949 8.025243 AGTAATGATTAGGTTTTGTGTGTACG 57.975 34.615 0.00 0.00 0.00 3.67
2235 5033 3.912745 AAACCCTAGTTGCCGCCCG 62.913 63.158 0.00 0.00 35.97 6.13
2243 5041 1.079336 GCGCGAGGAAACCCTAGTT 60.079 57.895 12.10 0.00 38.03 2.24
2263 5061 4.097361 GAGGAGGAACGGGGTGGC 62.097 72.222 0.00 0.00 0.00 5.01
2264 5062 3.400054 GGAGGAGGAACGGGGTGG 61.400 72.222 0.00 0.00 0.00 4.61
2265 5063 2.284699 AGGAGGAGGAACGGGGTG 60.285 66.667 0.00 0.00 0.00 4.61
2266 5064 2.039137 GAGGAGGAGGAACGGGGT 59.961 66.667 0.00 0.00 0.00 4.95
2267 5065 1.758906 GAGAGGAGGAGGAACGGGG 60.759 68.421 0.00 0.00 0.00 5.73
2268 5066 0.551879 TAGAGAGGAGGAGGAACGGG 59.448 60.000 0.00 0.00 0.00 5.28
2269 5067 1.682740 GTAGAGAGGAGGAGGAACGG 58.317 60.000 0.00 0.00 0.00 4.44
2270 5068 1.213430 AGGTAGAGAGGAGGAGGAACG 59.787 57.143 0.00 0.00 0.00 3.95
2271 5069 2.747135 CGAGGTAGAGAGGAGGAGGAAC 60.747 59.091 0.00 0.00 0.00 3.62
2272 5070 1.491332 CGAGGTAGAGAGGAGGAGGAA 59.509 57.143 0.00 0.00 0.00 3.36
2273 5071 1.133363 CGAGGTAGAGAGGAGGAGGA 58.867 60.000 0.00 0.00 0.00 3.71
2274 5072 0.536460 GCGAGGTAGAGAGGAGGAGG 60.536 65.000 0.00 0.00 0.00 4.30
2275 5073 0.536460 GGCGAGGTAGAGAGGAGGAG 60.536 65.000 0.00 0.00 0.00 3.69
2276 5074 1.532728 GGCGAGGTAGAGAGGAGGA 59.467 63.158 0.00 0.00 0.00 3.71
2277 5075 1.894756 CGGCGAGGTAGAGAGGAGG 60.895 68.421 0.00 0.00 0.00 4.30
2278 5076 2.548295 GCGGCGAGGTAGAGAGGAG 61.548 68.421 12.98 0.00 0.00 3.69
2279 5077 2.516460 GCGGCGAGGTAGAGAGGA 60.516 66.667 12.98 0.00 0.00 3.71
2280 5078 3.597728 GGCGGCGAGGTAGAGAGG 61.598 72.222 12.98 0.00 0.00 3.69
2281 5079 2.829003 TGGCGGCGAGGTAGAGAG 60.829 66.667 12.98 0.00 0.00 3.20
2282 5080 3.138798 GTGGCGGCGAGGTAGAGA 61.139 66.667 12.98 0.00 0.00 3.10
2283 5081 4.208686 GGTGGCGGCGAGGTAGAG 62.209 72.222 12.98 0.00 0.00 2.43
2293 5091 4.410400 GACCTCCTTGGGTGGCGG 62.410 72.222 4.78 0.00 39.73 6.13
2294 5092 4.760047 CGACCTCCTTGGGTGGCG 62.760 72.222 4.78 6.03 39.73 5.69
2295 5093 3.607370 GACGACCTCCTTGGGTGGC 62.607 68.421 4.78 0.00 39.73 5.01
2296 5094 2.663196 GACGACCTCCTTGGGTGG 59.337 66.667 0.00 3.45 41.65 4.61
2297 5095 2.261671 CGACGACCTCCTTGGGTG 59.738 66.667 0.00 0.00 40.06 4.61
2298 5096 2.995574 CCGACGACCTCCTTGGGT 60.996 66.667 0.00 0.00 43.07 4.51
2299 5097 3.771160 CCCGACGACCTCCTTGGG 61.771 72.222 0.00 0.00 41.11 4.12
2300 5098 4.452733 GCCCGACGACCTCCTTGG 62.453 72.222 0.00 0.00 42.93 3.61
2301 5099 3.234630 TTGCCCGACGACCTCCTTG 62.235 63.158 0.00 0.00 0.00 3.61
2302 5100 2.920912 TTGCCCGACGACCTCCTT 60.921 61.111 0.00 0.00 0.00 3.36
2303 5101 3.382832 CTTGCCCGACGACCTCCT 61.383 66.667 0.00 0.00 0.00 3.69
2352 5150 2.668550 AAACGGAGCGGCAAGGTC 60.669 61.111 1.45 2.50 46.08 3.85
2353 5151 2.668550 GAAACGGAGCGGCAAGGT 60.669 61.111 1.45 0.00 0.00 3.50
2354 5152 2.358737 AGAAACGGAGCGGCAAGG 60.359 61.111 1.45 0.00 0.00 3.61
2355 5153 1.355066 GAGAGAAACGGAGCGGCAAG 61.355 60.000 1.45 0.00 0.00 4.01
2356 5154 1.374252 GAGAGAAACGGAGCGGCAA 60.374 57.895 1.45 0.00 0.00 4.52
2357 5155 2.261671 GAGAGAAACGGAGCGGCA 59.738 61.111 1.45 0.00 0.00 5.69
2358 5156 2.881352 CGAGAGAAACGGAGCGGC 60.881 66.667 0.00 0.00 0.00 6.53
2359 5157 2.881352 GCGAGAGAAACGGAGCGG 60.881 66.667 0.00 0.00 0.00 5.52
2360 5158 3.241059 CGCGAGAGAAACGGAGCG 61.241 66.667 0.00 0.00 41.56 5.03
2364 5162 2.202623 CCTCCGCGAGAGAAACGG 60.203 66.667 21.43 5.97 46.50 4.44
2365 5163 2.202623 CCCTCCGCGAGAGAAACG 60.203 66.667 21.43 8.30 46.50 3.60
2366 5164 2.509561 GCCCTCCGCGAGAGAAAC 60.510 66.667 21.43 9.71 46.50 2.78
2367 5165 2.994995 TGCCCTCCGCGAGAGAAA 60.995 61.111 21.43 7.60 46.50 2.52
2368 5166 3.452786 CTGCCCTCCGCGAGAGAA 61.453 66.667 21.43 9.21 46.50 2.87
2404 5202 3.246112 TCACTTCACCACCCGGGG 61.246 66.667 27.92 12.73 42.91 5.73
2405 5203 2.032071 GTCACTTCACCACCCGGG 59.968 66.667 22.25 22.25 44.81 5.73
2406 5204 2.357034 CGTCACTTCACCACCCGG 60.357 66.667 0.00 0.00 38.77 5.73
2407 5205 1.663702 GTCGTCACTTCACCACCCG 60.664 63.158 0.00 0.00 0.00 5.28
2408 5206 1.663702 CGTCGTCACTTCACCACCC 60.664 63.158 0.00 0.00 0.00 4.61
2409 5207 0.938168 GACGTCGTCACTTCACCACC 60.938 60.000 20.28 0.00 32.09 4.61
2410 5208 0.030369 AGACGTCGTCACTTCACCAC 59.970 55.000 26.17 0.00 34.60 4.16
2411 5209 0.742505 AAGACGTCGTCACTTCACCA 59.257 50.000 26.17 0.00 34.60 4.17
2412 5210 1.129326 CAAGACGTCGTCACTTCACC 58.871 55.000 26.17 0.00 34.60 4.02
2413 5211 1.779724 GTCAAGACGTCGTCACTTCAC 59.220 52.381 26.17 6.88 34.60 3.18
2414 5212 1.402613 TGTCAAGACGTCGTCACTTCA 59.597 47.619 26.17 16.19 34.60 3.02
2415 5213 2.044860 CTGTCAAGACGTCGTCACTTC 58.955 52.381 26.17 14.06 34.60 3.01
2416 5214 1.674441 TCTGTCAAGACGTCGTCACTT 59.326 47.619 26.17 10.81 34.60 3.16
2417 5215 1.306148 TCTGTCAAGACGTCGTCACT 58.694 50.000 26.17 10.85 34.60 3.41
2418 5216 2.044860 CTTCTGTCAAGACGTCGTCAC 58.955 52.381 26.17 16.22 34.60 3.67
2419 5217 1.001706 CCTTCTGTCAAGACGTCGTCA 60.002 52.381 26.17 5.87 34.60 4.35
2420 5218 1.687628 CCTTCTGTCAAGACGTCGTC 58.312 55.000 17.70 17.70 29.98 4.20
2421 5219 0.318784 GCCTTCTGTCAAGACGTCGT 60.319 55.000 10.46 3.44 29.98 4.34
2422 5220 1.337817 CGCCTTCTGTCAAGACGTCG 61.338 60.000 10.46 0.00 29.98 5.12
2423 5221 0.318784 ACGCCTTCTGTCAAGACGTC 60.319 55.000 7.70 7.70 29.50 4.34
2424 5222 0.318784 GACGCCTTCTGTCAAGACGT 60.319 55.000 0.00 0.00 35.92 4.34
2425 5223 0.318699 TGACGCCTTCTGTCAAGACG 60.319 55.000 0.00 0.00 42.99 4.18
2426 5224 1.269831 ACTGACGCCTTCTGTCAAGAC 60.270 52.381 0.00 0.00 45.05 3.01
2427 5225 1.040646 ACTGACGCCTTCTGTCAAGA 58.959 50.000 0.00 0.00 45.05 3.02
2428 5226 3.595691 ACTGACGCCTTCTGTCAAG 57.404 52.632 0.00 0.00 45.05 3.02
2431 5229 0.318784 AACGACTGACGCCTTCTGTC 60.319 55.000 0.00 8.98 45.38 3.51
2432 5230 0.597637 CAACGACTGACGCCTTCTGT 60.598 55.000 0.00 0.00 46.94 3.41
2433 5231 1.284982 CCAACGACTGACGCCTTCTG 61.285 60.000 0.00 0.00 46.94 3.02
2434 5232 1.006102 CCAACGACTGACGCCTTCT 60.006 57.895 0.00 0.00 46.94 2.85
2435 5233 1.300697 ACCAACGACTGACGCCTTC 60.301 57.895 0.00 0.00 46.94 3.46
2436 5234 1.594293 CACCAACGACTGACGCCTT 60.594 57.895 0.00 0.00 46.94 4.35
2437 5235 2.029073 CACCAACGACTGACGCCT 59.971 61.111 0.00 0.00 46.94 5.52
2438 5236 2.758770 TAGCACCAACGACTGACGCC 62.759 60.000 0.00 0.00 46.94 5.68
2439 5237 1.344942 CTAGCACCAACGACTGACGC 61.345 60.000 0.00 0.00 46.94 5.19
2441 5239 1.419374 CACTAGCACCAACGACTGAC 58.581 55.000 0.00 0.00 0.00 3.51
2442 5240 0.317160 CCACTAGCACCAACGACTGA 59.683 55.000 0.00 0.00 0.00 3.41
2443 5241 0.317160 TCCACTAGCACCAACGACTG 59.683 55.000 0.00 0.00 0.00 3.51
2444 5242 0.603569 CTCCACTAGCACCAACGACT 59.396 55.000 0.00 0.00 0.00 4.18
2445 5243 0.601558 TCTCCACTAGCACCAACGAC 59.398 55.000 0.00 0.00 0.00 4.34
2446 5244 0.888619 CTCTCCACTAGCACCAACGA 59.111 55.000 0.00 0.00 0.00 3.85
2447 5245 0.108615 CCTCTCCACTAGCACCAACG 60.109 60.000 0.00 0.00 0.00 4.10
2448 5246 0.391793 GCCTCTCCACTAGCACCAAC 60.392 60.000 0.00 0.00 0.00 3.77
2449 5247 1.553690 GGCCTCTCCACTAGCACCAA 61.554 60.000 0.00 0.00 34.01 3.67
2450 5248 1.990060 GGCCTCTCCACTAGCACCA 60.990 63.158 0.00 0.00 34.01 4.17
2451 5249 1.681486 GAGGCCTCTCCACTAGCACC 61.681 65.000 26.25 0.00 37.29 5.01
2452 5250 0.686112 AGAGGCCTCTCCACTAGCAC 60.686 60.000 30.40 0.00 40.83 4.40
2453 5251 1.700368 AGAGGCCTCTCCACTAGCA 59.300 57.895 30.40 0.00 40.83 3.49
2454 5252 4.697102 AGAGGCCTCTCCACTAGC 57.303 61.111 30.40 1.13 40.83 3.42
2468 5266 3.764466 AACCCGAGCGGCTGAGAG 61.764 66.667 7.50 0.00 33.26 3.20
2469 5267 4.069232 CAACCCGAGCGGCTGAGA 62.069 66.667 7.50 0.00 33.26 3.27
2479 5277 4.697756 CAAGGCCTCGCAACCCGA 62.698 66.667 5.23 0.00 45.15 5.14
2481 5279 4.660938 ACCAAGGCCTCGCAACCC 62.661 66.667 5.23 0.00 0.00 4.11
2482 5280 3.365265 CACCAAGGCCTCGCAACC 61.365 66.667 5.23 0.00 0.00 3.77
2483 5281 3.365265 CCACCAAGGCCTCGCAAC 61.365 66.667 5.23 0.00 0.00 4.17
2484 5282 3.429372 AACCACCAAGGCCTCGCAA 62.429 57.895 5.23 0.00 43.14 4.85
2485 5283 3.884774 AACCACCAAGGCCTCGCA 61.885 61.111 5.23 0.00 43.14 5.10
2486 5284 3.365265 CAACCACCAAGGCCTCGC 61.365 66.667 5.23 0.00 43.14 5.03
2487 5285 2.672996 CCAACCACCAAGGCCTCG 60.673 66.667 5.23 0.95 43.14 4.63
2488 5286 1.903404 CACCAACCACCAAGGCCTC 60.903 63.158 5.23 0.00 43.14 4.70
2489 5287 2.198426 CACCAACCACCAAGGCCT 59.802 61.111 0.00 0.00 43.14 5.19
2490 5288 2.917227 CCACCAACCACCAAGGCC 60.917 66.667 0.00 0.00 43.14 5.19
2491 5289 3.615709 GCCACCAACCACCAAGGC 61.616 66.667 0.00 0.00 43.14 4.35
2492 5290 2.123511 TGCCACCAACCACCAAGG 60.124 61.111 0.00 0.00 45.67 3.61
2493 5291 2.859981 GCTGCCACCAACCACCAAG 61.860 63.158 0.00 0.00 0.00 3.61
2494 5292 2.837291 GCTGCCACCAACCACCAA 60.837 61.111 0.00 0.00 0.00 3.67
2518 5316 7.729079 TCAAATTTGACGAAGAGGAAGGCCT 62.729 44.000 16.91 0.00 38.79 5.19
2519 5317 2.115343 ATTTGACGAAGAGGAAGGCC 57.885 50.000 0.00 0.00 0.00 5.19
2520 5318 3.502211 TCAAATTTGACGAAGAGGAAGGC 59.498 43.478 16.91 0.00 31.01 4.35
2521 5319 5.335191 CCTTCAAATTTGACGAAGAGGAAGG 60.335 44.000 23.14 18.02 41.81 3.46
2522 5320 5.239525 ACCTTCAAATTTGACGAAGAGGAAG 59.760 40.000 29.84 18.14 38.75 3.46
2523 5321 5.130350 ACCTTCAAATTTGACGAAGAGGAA 58.870 37.500 29.84 11.46 38.75 3.36
2524 5322 4.714632 ACCTTCAAATTTGACGAAGAGGA 58.285 39.130 29.84 12.04 38.75 3.71
2525 5323 5.389516 CGTACCTTCAAATTTGACGAAGAGG 60.390 44.000 24.75 24.75 38.75 3.69
2526 5324 5.404366 TCGTACCTTCAAATTTGACGAAGAG 59.596 40.000 22.29 16.04 38.75 2.85
2527 5325 5.291178 TCGTACCTTCAAATTTGACGAAGA 58.709 37.500 22.29 14.25 38.75 2.87
2528 5326 5.585500 TCGTACCTTCAAATTTGACGAAG 57.415 39.130 22.29 16.61 36.83 3.79
2529 5327 6.091169 GGTATCGTACCTTCAAATTTGACGAA 59.909 38.462 25.91 16.66 45.52 3.85
2530 5328 5.577945 GGTATCGTACCTTCAAATTTGACGA 59.422 40.000 24.96 24.96 45.52 4.20
2531 5329 5.792631 GGTATCGTACCTTCAAATTTGACG 58.207 41.667 20.35 19.11 45.52 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.