Multiple sequence alignment - TraesCS5D01G414500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G414500 chr5D 100.000 5518 0 0 1 5518 476944258 476938741 0.000000e+00 10190.0
1 TraesCS5D01G414500 chr5D 87.067 549 63 6 182 724 213676285 213675739 1.020000e-171 614.0
2 TraesCS5D01G414500 chr5D 92.896 183 9 3 4891 5072 9947597 9947776 4.240000e-66 263.0
3 TraesCS5D01G414500 chr5D 95.000 100 5 0 1914 2013 328911653 328911554 2.060000e-34 158.0
4 TraesCS5D01G414500 chr5D 90.244 123 9 2 1892 2014 415614998 415615117 2.060000e-34 158.0
5 TraesCS5D01G414500 chr5B 93.078 2947 113 23 2008 4910 584823233 584820334 0.000000e+00 4228.0
6 TraesCS5D01G414500 chr5B 91.822 1076 59 11 858 1916 584824293 584823230 0.000000e+00 1472.0
7 TraesCS5D01G414500 chr5B 90.598 819 56 10 1 817 584825196 584824397 0.000000e+00 1066.0
8 TraesCS5D01G414500 chr5B 87.689 463 20 14 5072 5518 584820337 584819896 6.380000e-139 505.0
9 TraesCS5D01G414500 chr5B 90.698 215 17 2 2226 2437 629956569 629956783 3.250000e-72 283.0
10 TraesCS5D01G414500 chr5B 92.593 108 7 1 1912 2019 50175624 50175730 2.660000e-33 154.0
11 TraesCS5D01G414500 chr5B 89.394 66 3 3 804 866 584824379 584824315 4.580000e-11 80.5
12 TraesCS5D01G414500 chr5A 95.637 1169 42 6 2470 3637 596449470 596448310 0.000000e+00 1868.0
13 TraesCS5D01G414500 chr5A 90.627 1355 79 20 577 1916 596451334 596450013 0.000000e+00 1755.0
14 TraesCS5D01G414500 chr5A 95.439 855 20 12 3697 4539 596448315 596447468 0.000000e+00 1345.0
15 TraesCS5D01G414500 chr5A 95.752 565 22 2 1 565 596452492 596451930 0.000000e+00 909.0
16 TraesCS5D01G414500 chr5A 96.781 466 14 1 2008 2472 596450016 596449551 0.000000e+00 776.0
17 TraesCS5D01G414500 chr5A 90.975 277 24 1 179 455 73840666 73840941 6.750000e-99 372.0
18 TraesCS5D01G414500 chr5A 85.278 360 33 13 5163 5518 596447474 596447131 2.450000e-93 353.0
19 TraesCS5D01G414500 chr5A 96.951 164 5 0 4909 5072 536857758 536857595 5.440000e-70 276.0
20 TraesCS5D01G414500 chr5A 94.253 174 10 0 4909 5082 585001810 585001637 3.280000e-67 267.0
21 TraesCS5D01G414500 chr7B 87.250 549 60 8 182 723 275258533 275257988 7.850000e-173 617.0
22 TraesCS5D01G414500 chr7B 92.105 190 15 0 2234 2423 675146864 675147053 9.110000e-68 268.0
23 TraesCS5D01G414500 chr1A 86.727 550 64 7 182 724 352506125 352505578 2.200000e-168 603.0
24 TraesCS5D01G414500 chr1A 86.667 60 3 5 3133 3190 547587839 547587783 1.660000e-05 62.1
25 TraesCS5D01G414500 chr2B 86.076 553 69 6 179 725 546645447 546645997 6.160000e-164 588.0
26 TraesCS5D01G414500 chr2B 89.542 153 12 2 2285 2437 606752366 606752514 2.030000e-44 191.0
27 TraesCS5D01G414500 chr2B 92.241 116 6 3 1912 2027 719528661 719528549 1.590000e-35 161.0
28 TraesCS5D01G414500 chr2B 94.118 102 5 1 1912 2013 601206846 601206946 2.660000e-33 154.0
29 TraesCS5D01G414500 chr3A 86.076 553 68 7 179 724 227442691 227443241 2.210000e-163 586.0
30 TraesCS5D01G414500 chr3A 82.640 553 83 12 179 724 343937857 343938403 1.390000e-130 477.0
31 TraesCS5D01G414500 chr3A 88.462 182 15 4 2257 2437 352455116 352454940 1.200000e-51 215.0
32 TraesCS5D01G414500 chr2D 97.561 164 4 0 4909 5072 203457360 203457197 1.170000e-71 281.0
33 TraesCS5D01G414500 chr2D 96.364 165 6 0 4909 5073 130727673 130727509 7.040000e-69 272.0
34 TraesCS5D01G414500 chr2D 90.196 51 2 2 3154 3204 556234886 556234933 4.610000e-06 63.9
35 TraesCS5D01G414500 chr6D 96.951 164 5 0 4909 5072 311583349 311583186 5.440000e-70 276.0
36 TraesCS5D01G414500 chr6D 87.500 64 3 3 3153 3211 418632108 418632045 9.920000e-08 69.4
37 TraesCS5D01G414500 chr7A 95.858 169 6 1 4908 5075 689281057 689280889 7.040000e-69 272.0
38 TraesCS5D01G414500 chr7A 92.727 110 5 3 1911 2020 406995411 406995305 7.400000e-34 156.0
39 TraesCS5D01G414500 chr7D 96.341 164 6 0 4909 5072 598525680 598525843 2.530000e-68 270.0
40 TraesCS5D01G414500 chr7D 84.483 58 7 2 3129 3185 145832777 145832721 7.720000e-04 56.5
41 TraesCS5D01G414500 chr3D 91.005 189 15 2 4894 5080 84509701 84509513 2.550000e-63 254.0
42 TraesCS5D01G414500 chr3D 87.719 57 3 4 3129 3185 14946994 14946942 4.610000e-06 63.9
43 TraesCS5D01G414500 chrUn 90.909 121 8 3 1912 2031 347977092 347977210 5.720000e-35 159.0
44 TraesCS5D01G414500 chrUn 90.909 121 8 3 1912 2031 378080292 378080410 5.720000e-35 159.0
45 TraesCS5D01G414500 chrUn 91.837 49 1 1 3154 3199 35341741 35341693 1.280000e-06 65.8
46 TraesCS5D01G414500 chr4D 92.727 110 8 0 1904 2013 110080926 110081035 5.720000e-35 159.0
47 TraesCS5D01G414500 chr4B 91.111 45 3 1 3141 3185 59598583 59598626 5.970000e-05 60.2
48 TraesCS5D01G414500 chr3B 100.000 32 0 0 2228 2259 545817958 545817927 5.970000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G414500 chr5D 476938741 476944258 5517 True 10190.000000 10190 100.000000 1 5518 1 chr5D.!!$R3 5517
1 TraesCS5D01G414500 chr5D 213675739 213676285 546 True 614.000000 614 87.067000 182 724 1 chr5D.!!$R1 542
2 TraesCS5D01G414500 chr5B 584819896 584825196 5300 True 1470.300000 4228 90.516200 1 5518 5 chr5B.!!$R1 5517
3 TraesCS5D01G414500 chr5A 596447131 596452492 5361 True 1167.666667 1868 93.252333 1 5518 6 chr5A.!!$R3 5517
4 TraesCS5D01G414500 chr7B 275257988 275258533 545 True 617.000000 617 87.250000 182 723 1 chr7B.!!$R1 541
5 TraesCS5D01G414500 chr1A 352505578 352506125 547 True 603.000000 603 86.727000 182 724 1 chr1A.!!$R1 542
6 TraesCS5D01G414500 chr2B 546645447 546645997 550 False 588.000000 588 86.076000 179 725 1 chr2B.!!$F1 546
7 TraesCS5D01G414500 chr3A 227442691 227443241 550 False 586.000000 586 86.076000 179 724 1 chr3A.!!$F1 545
8 TraesCS5D01G414500 chr3A 343937857 343938403 546 False 477.000000 477 82.640000 179 724 1 chr3A.!!$F2 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 1311 1.003118 TGGTATCTGGTTGGACTGCAC 59.997 52.381 0.00 0.0 0.0 4.57 F
1784 2472 0.097674 GTGGCTTATTCTGCTGCACG 59.902 55.000 0.00 0.0 0.0 5.34 F
1926 2614 0.186873 TGGTATACTCCCTCCGTCCC 59.813 60.000 2.25 0.0 0.0 4.46 F
1927 2615 0.186873 GGTATACTCCCTCCGTCCCA 59.813 60.000 2.25 0.0 0.0 4.37 F
2003 2691 1.014352 CGCTTATTTTGGGACGGAGG 58.986 55.000 0.00 0.0 0.0 4.30 F
2005 2693 1.064979 GCTTATTTTGGGACGGAGGGA 60.065 52.381 0.00 0.0 0.0 4.20 F
4060 4875 0.251787 ATGGCTCCTTTCCGGCTTTT 60.252 50.000 0.00 0.0 0.0 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1991 2679 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28 R
3737 4545 1.421410 CGGCATAACGTGAGAGCCAC 61.421 60.000 16.91 0.00 45.47 5.01 R
3802 4610 4.187694 CTGCTGACTTTTCCTATGAGGTC 58.812 47.826 0.00 0.00 36.53 3.85 R
3919 4731 9.205719 TCTAGAGTACTACGACATGATGTATTC 57.794 37.037 0.00 1.98 0.00 1.75 R
4060 4875 2.708216 TCACTTGTTTGAGGTGCAGA 57.292 45.000 0.00 0.00 0.00 4.26 R
4072 4887 1.337823 GGCGTGTCCTGTATCACTTGT 60.338 52.381 0.00 0.00 33.07 3.16 R
5054 5877 0.115745 AGTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.303309 ATATTCAGTCGCTTGCCTGC 58.697 50.000 0.00 0.00 0.00 4.85
672 1266 6.208204 ACTCTGTTTTTCTGATGGAGATTTGG 59.792 38.462 0.00 0.00 0.00 3.28
677 1271 7.233144 TGTTTTTCTGATGGAGATTTGGAATGA 59.767 33.333 0.00 0.00 0.00 2.57
717 1311 1.003118 TGGTATCTGGTTGGACTGCAC 59.997 52.381 0.00 0.00 0.00 4.57
730 1324 3.066621 TGGACTGCACAACTTCAAATGTC 59.933 43.478 0.00 0.00 0.00 3.06
738 1332 7.085746 TGCACAACTTCAAATGTCATAATCAG 58.914 34.615 0.00 0.00 0.00 2.90
854 1484 2.067766 GCAGAGAGAAACAGAGCAGTG 58.932 52.381 0.00 0.00 0.00 3.66
855 1485 2.067766 CAGAGAGAAACAGAGCAGTGC 58.932 52.381 7.13 7.13 0.00 4.40
856 1486 1.066914 GAGAGAAACAGAGCAGTGCG 58.933 55.000 10.00 0.00 0.00 5.34
861 1523 1.510480 AAACAGAGCAGTGCGAAGGC 61.510 55.000 10.00 0.00 40.52 4.35
872 1534 3.044059 GCGAAGGCAGCAAAGCGAT 62.044 57.895 0.00 0.00 39.62 4.58
873 1535 1.503542 CGAAGGCAGCAAAGCGATT 59.496 52.632 0.00 0.00 34.64 3.34
902 1564 4.351938 CACCGACCGAGCCGAACA 62.352 66.667 0.00 0.00 0.00 3.18
949 1612 2.267961 CTAACCGAGCCCACCACC 59.732 66.667 0.00 0.00 0.00 4.61
958 1621 4.760047 CCCACCACCGAAGCCGAG 62.760 72.222 0.00 0.00 38.22 4.63
1035 1698 0.179065 CGCTGATCCAAGGCATCTCA 60.179 55.000 0.00 0.00 0.00 3.27
1209 1872 4.043059 TCCCTCTTCGCCTATGAGTACTAT 59.957 45.833 0.00 0.00 0.00 2.12
1234 1897 1.286849 TCTCCCCGTTCTACTCATCCA 59.713 52.381 0.00 0.00 0.00 3.41
1370 2048 6.465084 AGAACTGCGTCTTAGTTTAATCCTT 58.535 36.000 0.00 0.00 38.42 3.36
1374 2052 8.611654 ACTGCGTCTTAGTTTAATCCTTTTAA 57.388 30.769 0.00 0.00 0.00 1.52
1427 2105 6.763610 GTCTGCCTATATTATAATGCCCTGTC 59.236 42.308 8.28 0.00 0.00 3.51
1443 2121 4.404715 GCCCTGTCCAGTTAGTCTGTATTA 59.595 45.833 0.00 0.00 42.19 0.98
1474 2152 4.588951 GGAGGTGATACCACAGTATGATGA 59.411 45.833 0.28 0.00 44.93 2.92
1475 2153 5.279206 GGAGGTGATACCACAGTATGATGAG 60.279 48.000 0.28 0.00 44.93 2.90
1476 2154 4.039730 AGGTGATACCACAGTATGATGAGC 59.960 45.833 0.28 0.00 44.93 4.26
1477 2155 4.202253 GGTGATACCACAGTATGATGAGCA 60.202 45.833 0.00 0.00 44.93 4.26
1519 2197 6.876789 TGCTTAGCTGTGCTGTAGTTTTATAA 59.123 34.615 5.60 0.00 40.10 0.98
1520 2198 7.552687 TGCTTAGCTGTGCTGTAGTTTTATAAT 59.447 33.333 5.60 0.00 40.10 1.28
1521 2199 9.042008 GCTTAGCTGTGCTGTAGTTTTATAATA 57.958 33.333 0.00 0.00 40.10 0.98
1527 2205 8.902540 TGTGCTGTAGTTTTATAATATCCCTG 57.097 34.615 0.00 0.00 0.00 4.45
1611 2289 3.793712 TCCCCTGTTTACTGCCTACTTA 58.206 45.455 0.00 0.00 0.00 2.24
1623 2301 4.041740 TGCCTACTTACAATGCTAGTCG 57.958 45.455 0.00 0.00 0.00 4.18
1626 2304 4.608951 CCTACTTACAATGCTAGTCGGAC 58.391 47.826 0.00 0.00 28.89 4.79
1698 2384 4.147219 AGCGTTTGTCTGAATGTTAAGC 57.853 40.909 0.00 0.00 0.00 3.09
1717 2403 8.682710 TGTTAAGCTTATTCAAACTCAAAGTGT 58.317 29.630 7.08 0.00 0.00 3.55
1723 2409 2.722094 TCAAACTCAAAGTGTGGTGCT 58.278 42.857 0.00 0.00 34.20 4.40
1778 2466 3.788797 GCGTGTTATGTGGCTTATTCTGC 60.789 47.826 0.00 0.00 0.00 4.26
1784 2472 0.097674 GTGGCTTATTCTGCTGCACG 59.902 55.000 0.00 0.00 0.00 5.34
1816 2504 8.812972 ACTCTTGTGAAAGTTATCCATGTACTA 58.187 33.333 0.00 0.00 0.00 1.82
1855 2543 9.609346 TGTTAGCTACTAACTCTCTTTTGTTTT 57.391 29.630 16.16 0.00 44.49 2.43
1917 2605 9.449719 TTCTTTTGATTTCTTCTGGTATACTCC 57.550 33.333 2.25 0.00 0.00 3.85
1918 2606 8.047310 TCTTTTGATTTCTTCTGGTATACTCCC 58.953 37.037 2.25 0.00 0.00 4.30
1919 2607 7.510675 TTTGATTTCTTCTGGTATACTCCCT 57.489 36.000 2.25 0.00 0.00 4.20
1920 2608 6.732896 TGATTTCTTCTGGTATACTCCCTC 57.267 41.667 2.25 0.00 0.00 4.30
1921 2609 5.602978 TGATTTCTTCTGGTATACTCCCTCC 59.397 44.000 2.25 0.00 0.00 4.30
1922 2610 3.225177 TCTTCTGGTATACTCCCTCCG 57.775 52.381 2.25 0.00 0.00 4.63
1923 2611 2.512896 TCTTCTGGTATACTCCCTCCGT 59.487 50.000 2.25 0.00 0.00 4.69
1924 2612 2.653234 TCTGGTATACTCCCTCCGTC 57.347 55.000 2.25 0.00 0.00 4.79
1925 2613 1.144503 TCTGGTATACTCCCTCCGTCC 59.855 57.143 2.25 0.00 0.00 4.79
1926 2614 0.186873 TGGTATACTCCCTCCGTCCC 59.813 60.000 2.25 0.00 0.00 4.46
1927 2615 0.186873 GGTATACTCCCTCCGTCCCA 59.813 60.000 2.25 0.00 0.00 4.37
1928 2616 1.412074 GGTATACTCCCTCCGTCCCAA 60.412 57.143 2.25 0.00 0.00 4.12
1929 2617 2.391678 GTATACTCCCTCCGTCCCAAA 58.608 52.381 0.00 0.00 0.00 3.28
1930 2618 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
1931 2619 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1932 2620 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1933 2621 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1934 2622 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1935 2623 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1936 2624 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1937 2625 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
1938 2626 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1939 2627 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1940 2628 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
1941 2629 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
1942 2630 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
1943 2631 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
1944 2632 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
1945 2633 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
1946 2634 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
1947 2635 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
1948 2636 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
1949 2637 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
1950 2638 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
1951 2639 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
1957 2645 8.788325 AAGTGTCTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
1958 2646 9.880157 AAGTGTCTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
1959 2647 9.530633 AGTGTCTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
1960 2648 9.310716 GTGTCTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
1987 2675 7.492352 AAAATTGTACTAAACTTGAGACGCT 57.508 32.000 0.00 0.00 0.00 5.07
1988 2676 7.492352 AAATTGTACTAAACTTGAGACGCTT 57.508 32.000 0.00 0.00 0.00 4.68
1989 2677 8.597662 AAATTGTACTAAACTTGAGACGCTTA 57.402 30.769 0.00 0.00 0.00 3.09
1990 2678 8.773404 AATTGTACTAAACTTGAGACGCTTAT 57.227 30.769 0.00 0.00 0.00 1.73
1991 2679 8.773404 ATTGTACTAAACTTGAGACGCTTATT 57.227 30.769 0.00 0.00 0.00 1.40
1992 2680 8.597662 TTGTACTAAACTTGAGACGCTTATTT 57.402 30.769 0.00 0.00 0.00 1.40
1993 2681 8.597662 TGTACTAAACTTGAGACGCTTATTTT 57.402 30.769 0.00 0.00 0.00 1.82
1994 2682 8.492748 TGTACTAAACTTGAGACGCTTATTTTG 58.507 33.333 0.00 0.00 0.00 2.44
1995 2683 6.899114 ACTAAACTTGAGACGCTTATTTTGG 58.101 36.000 0.00 0.00 0.00 3.28
1996 2684 4.766404 AACTTGAGACGCTTATTTTGGG 57.234 40.909 0.00 0.00 0.00 4.12
1997 2685 4.015872 ACTTGAGACGCTTATTTTGGGA 57.984 40.909 0.00 0.00 0.00 4.37
1998 2686 3.751698 ACTTGAGACGCTTATTTTGGGAC 59.248 43.478 0.00 0.00 0.00 4.46
1999 2687 2.343101 TGAGACGCTTATTTTGGGACG 58.657 47.619 0.00 0.00 0.00 4.79
2000 2688 1.664151 GAGACGCTTATTTTGGGACGG 59.336 52.381 0.00 0.00 0.00 4.79
2001 2689 1.276989 AGACGCTTATTTTGGGACGGA 59.723 47.619 0.00 0.00 0.00 4.69
2002 2690 1.664151 GACGCTTATTTTGGGACGGAG 59.336 52.381 0.00 0.00 0.00 4.63
2003 2691 1.014352 CGCTTATTTTGGGACGGAGG 58.986 55.000 0.00 0.00 0.00 4.30
2004 2692 1.389555 GCTTATTTTGGGACGGAGGG 58.610 55.000 0.00 0.00 0.00 4.30
2005 2693 1.064979 GCTTATTTTGGGACGGAGGGA 60.065 52.381 0.00 0.00 0.00 4.20
2006 2694 2.919228 CTTATTTTGGGACGGAGGGAG 58.081 52.381 0.00 0.00 0.00 4.30
2007 2695 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2008 2696 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2023 2711 7.892241 ACGGAGGGAGTACTATGCTATTTTATA 59.108 37.037 0.00 0.00 0.00 0.98
2108 2796 7.336427 TCAGTGTAAATCATTATGACATGTGCA 59.664 33.333 1.15 1.26 0.00 4.57
2218 2906 4.206375 TGAACAAAATCTGCCAGTCAAGA 58.794 39.130 0.00 0.00 0.00 3.02
2312 3000 8.607441 TTTAATTCATTCACGGGATATCAGAG 57.393 34.615 4.83 0.00 0.00 3.35
2569 3341 7.630242 TTTTAATTCTACTAATGCTGCAGCT 57.370 32.000 36.61 21.93 42.66 4.24
2687 3459 1.999071 TTGTGGCCACTTGTGCGTTC 61.999 55.000 34.75 6.57 0.00 3.95
2759 3531 7.437267 TCTGTCAAAAAGGTTTAGTACTTCTCG 59.563 37.037 0.00 0.00 0.00 4.04
2764 3536 3.910648 AGGTTTAGTACTTCTCGTGCAC 58.089 45.455 6.82 6.82 0.00 4.57
2766 3538 4.038883 AGGTTTAGTACTTCTCGTGCACTT 59.961 41.667 16.19 0.00 0.00 3.16
2818 3590 4.508124 CCTATCCGCTGATACTTGTTGTTC 59.492 45.833 0.00 0.00 32.18 3.18
3199 3999 6.210287 AGATCGTTTTTACAGAGGGAGTAG 57.790 41.667 0.00 0.00 0.00 2.57
3200 4000 5.715753 AGATCGTTTTTACAGAGGGAGTAGT 59.284 40.000 0.00 0.00 0.00 2.73
3201 4001 6.888632 AGATCGTTTTTACAGAGGGAGTAGTA 59.111 38.462 0.00 0.00 0.00 1.82
3219 4019 7.040062 GGAGTAGTACATTCTATGATCAGTGCT 60.040 40.741 0.09 4.07 0.00 4.40
3237 4037 4.711846 AGTGCTTATGATGTCTGTGTAGGA 59.288 41.667 0.00 0.00 0.00 2.94
3238 4038 4.806247 GTGCTTATGATGTCTGTGTAGGAC 59.194 45.833 0.00 0.00 0.00 3.85
3329 4129 6.360618 CCTTTTTCCTATGGCAAGATACTCT 58.639 40.000 0.00 0.00 0.00 3.24
3570 4370 3.497262 ACGATTCAACGGAAAGAAAGGTC 59.503 43.478 0.00 0.00 36.43 3.85
3640 4440 7.400052 TCTTATCATACCTGGCATAGCTTGATA 59.600 37.037 0.00 0.00 0.00 2.15
3642 4442 2.533266 ACCTGGCATAGCTTGATACG 57.467 50.000 0.00 0.00 0.00 3.06
3737 4545 4.620982 TGCACATCAATATCACTCCTACG 58.379 43.478 0.00 0.00 0.00 3.51
4060 4875 0.251787 ATGGCTCCTTTCCGGCTTTT 60.252 50.000 0.00 0.00 0.00 2.27
4072 4887 0.667993 CGGCTTTTCTGCACCTCAAA 59.332 50.000 0.00 0.00 34.04 2.69
4184 5003 3.360867 TCGCCCCAAATCATACATGTTT 58.639 40.909 2.30 0.00 0.00 2.83
4185 5004 3.766591 TCGCCCCAAATCATACATGTTTT 59.233 39.130 2.30 0.00 31.77 2.43
4197 5016 3.602390 ACATGTTTTCGTCGTTCTTGG 57.398 42.857 0.00 0.00 0.00 3.61
4198 5017 3.199677 ACATGTTTTCGTCGTTCTTGGA 58.800 40.909 0.00 0.00 0.00 3.53
4200 5019 3.167921 TGTTTTCGTCGTTCTTGGAGA 57.832 42.857 0.00 0.00 0.00 3.71
4202 5021 2.144482 TTTCGTCGTTCTTGGAGACC 57.856 50.000 0.00 0.00 0.00 3.85
4205 5024 1.684983 TCGTCGTTCTTGGAGACCTTT 59.315 47.619 0.00 0.00 0.00 3.11
4206 5025 1.792949 CGTCGTTCTTGGAGACCTTTG 59.207 52.381 0.00 0.00 0.00 2.77
4207 5026 1.531578 GTCGTTCTTGGAGACCTTTGC 59.468 52.381 0.00 0.00 0.00 3.68
4208 5027 1.416401 TCGTTCTTGGAGACCTTTGCT 59.584 47.619 0.00 0.00 0.00 3.91
4209 5028 1.532868 CGTTCTTGGAGACCTTTGCTG 59.467 52.381 0.00 0.00 0.00 4.41
4221 5040 3.414136 TTTGCTGCAGTGGTCCGGT 62.414 57.895 16.64 0.00 0.00 5.28
4233 5052 2.284405 TCCGGTCCTCTGAACCCC 60.284 66.667 0.00 0.00 32.89 4.95
4361 5183 0.391597 TCTGGTTCAACGAGGTGGTC 59.608 55.000 0.00 0.00 0.00 4.02
4404 5226 1.605058 GAGCTTCCCCTACGTGCTGA 61.605 60.000 0.00 0.00 33.83 4.26
4412 5234 2.752640 TACGTGCTGAGGCGCCTA 60.753 61.111 32.97 11.68 45.20 3.93
4499 5321 2.282462 CGCAAGGTGAAGCCCCTT 60.282 61.111 0.00 0.00 43.11 3.95
4541 5363 1.207791 CTGAATCTAGTGCCCTGGGT 58.792 55.000 15.56 0.00 0.00 4.51
4566 5388 7.528803 TGTTGTCCTGACTGGAATTTCAACAA 61.529 38.462 22.25 11.68 46.16 2.83
4583 5405 1.591594 AATGCGTGGCCTCGATACG 60.592 57.895 30.07 19.16 40.52 3.06
4591 5413 2.782222 GCCTCGATACGCTCCACCA 61.782 63.158 0.00 0.00 0.00 4.17
4638 5460 7.644986 AGTAGTTCTTTTCTTCGTCATCTTG 57.355 36.000 0.00 0.00 0.00 3.02
4639 5461 7.434492 AGTAGTTCTTTTCTTCGTCATCTTGA 58.566 34.615 0.00 0.00 0.00 3.02
4640 5462 8.091449 AGTAGTTCTTTTCTTCGTCATCTTGAT 58.909 33.333 0.00 0.00 0.00 2.57
4641 5463 7.736447 AGTTCTTTTCTTCGTCATCTTGATT 57.264 32.000 0.00 0.00 0.00 2.57
4642 5464 8.159344 AGTTCTTTTCTTCGTCATCTTGATTT 57.841 30.769 0.00 0.00 0.00 2.17
4643 5465 8.072567 AGTTCTTTTCTTCGTCATCTTGATTTG 58.927 33.333 0.00 0.00 0.00 2.32
4653 5475 6.045318 CGTCATCTTGATTTGAGGTGTAGAT 58.955 40.000 0.00 0.00 0.00 1.98
4692 5514 3.070018 AGGAGCAGTCATTCAAAGTTCG 58.930 45.455 0.00 0.00 0.00 3.95
4696 5518 2.666619 GCAGTCATTCAAAGTTCGCAGG 60.667 50.000 0.00 0.00 0.00 4.85
4775 5597 4.370049 TGATGTTGTTCAAGGCAAATGTG 58.630 39.130 0.00 0.00 0.00 3.21
4780 5602 2.562298 TGTTCAAGGCAAATGTGGATCC 59.438 45.455 4.20 4.20 0.00 3.36
4896 5719 5.065914 CCCTGTCTGTTTTCTTCTTGATCA 58.934 41.667 0.00 0.00 0.00 2.92
4906 5729 9.076781 TGTTTTCTTCTTGATCATTACCATGAA 57.923 29.630 0.00 0.00 42.93 2.57
4907 5730 9.565213 GTTTTCTTCTTGATCATTACCATGAAG 57.435 33.333 0.00 0.00 42.93 3.02
4908 5731 8.868522 TTTCTTCTTGATCATTACCATGAAGT 57.131 30.769 0.00 0.00 42.93 3.01
4909 5732 9.958180 TTTCTTCTTGATCATTACCATGAAGTA 57.042 29.630 0.00 0.00 42.93 2.24
4910 5733 8.948631 TCTTCTTGATCATTACCATGAAGTAC 57.051 34.615 0.00 0.00 42.93 2.73
4911 5734 8.762645 TCTTCTTGATCATTACCATGAAGTACT 58.237 33.333 0.00 0.00 42.93 2.73
4912 5735 8.948631 TTCTTGATCATTACCATGAAGTACTC 57.051 34.615 0.00 0.00 42.93 2.59
4913 5736 7.500992 TCTTGATCATTACCATGAAGTACTCC 58.499 38.462 0.00 0.00 42.93 3.85
4914 5737 6.174720 TGATCATTACCATGAAGTACTCCC 57.825 41.667 0.00 0.00 42.93 4.30
4915 5738 5.905331 TGATCATTACCATGAAGTACTCCCT 59.095 40.000 0.00 0.00 42.93 4.20
4916 5739 5.871396 TCATTACCATGAAGTACTCCCTC 57.129 43.478 0.00 0.00 36.41 4.30
4917 5740 4.654262 TCATTACCATGAAGTACTCCCTCC 59.346 45.833 0.00 0.00 36.41 4.30
4918 5741 1.486211 ACCATGAAGTACTCCCTCCG 58.514 55.000 0.00 0.00 0.00 4.63
4919 5742 1.273098 ACCATGAAGTACTCCCTCCGT 60.273 52.381 0.00 0.00 0.00 4.69
4920 5743 1.831736 CCATGAAGTACTCCCTCCGTT 59.168 52.381 0.00 0.00 0.00 4.44
4921 5744 2.159085 CCATGAAGTACTCCCTCCGTTC 60.159 54.545 0.00 0.00 0.00 3.95
4922 5745 1.553706 TGAAGTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
4923 5746 1.076677 TGAAGTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 0.00 3.36
4924 5747 2.309755 TGAAGTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
4925 5748 3.245371 TGAAGTACTCCCTCCGTTCCTAA 60.245 47.826 0.00 0.00 0.00 2.69
4926 5749 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4927 5750 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4928 5751 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4929 5752 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4930 5753 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
4931 5754 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4932 5755 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4933 5756 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4934 5757 6.069705 TCCCTCCGTTCCTAAATATTTGTT 57.930 37.500 11.05 0.00 0.00 2.83
4935 5758 6.486941 TCCCTCCGTTCCTAAATATTTGTTT 58.513 36.000 11.05 0.00 0.00 2.83
4936 5759 6.949463 TCCCTCCGTTCCTAAATATTTGTTTT 59.051 34.615 11.05 0.00 0.00 2.43
4937 5760 7.452189 TCCCTCCGTTCCTAAATATTTGTTTTT 59.548 33.333 11.05 0.00 0.00 1.94
4938 5761 7.758076 CCCTCCGTTCCTAAATATTTGTTTTTC 59.242 37.037 11.05 0.00 0.00 2.29
4939 5762 8.520351 CCTCCGTTCCTAAATATTTGTTTTTCT 58.480 33.333 11.05 0.00 0.00 2.52
4966 5789 9.355215 AGAGATTTTAACAAGTGACTACATACG 57.645 33.333 0.00 0.00 0.00 3.06
4967 5790 9.350357 GAGATTTTAACAAGTGACTACATACGA 57.650 33.333 0.00 0.00 0.00 3.43
4968 5791 9.701098 AGATTTTAACAAGTGACTACATACGAA 57.299 29.630 0.00 0.00 0.00 3.85
4969 5792 9.953825 GATTTTAACAAGTGACTACATACGAAG 57.046 33.333 0.00 0.00 0.00 3.79
4970 5793 6.939551 TTAACAAGTGACTACATACGAAGC 57.060 37.500 0.00 0.00 0.00 3.86
4971 5794 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
4972 5795 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
4973 5796 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
4974 5797 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
4975 5798 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
4976 5799 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
4977 5800 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
4978 5801 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
4979 5802 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
4980 5803 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
4981 5804 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
4982 5805 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
4983 5806 5.689819 ACATACGAAGCAAAATGAGTGAAC 58.310 37.500 0.00 0.00 0.00 3.18
4984 5807 3.626028 ACGAAGCAAAATGAGTGAACC 57.374 42.857 0.00 0.00 0.00 3.62
4985 5808 3.214328 ACGAAGCAAAATGAGTGAACCT 58.786 40.909 0.00 0.00 0.00 3.50
4986 5809 4.385825 ACGAAGCAAAATGAGTGAACCTA 58.614 39.130 0.00 0.00 0.00 3.08
4987 5810 4.213482 ACGAAGCAAAATGAGTGAACCTAC 59.787 41.667 0.00 0.00 0.00 3.18
4988 5811 4.213270 CGAAGCAAAATGAGTGAACCTACA 59.787 41.667 0.00 0.00 0.00 2.74
4989 5812 5.106555 CGAAGCAAAATGAGTGAACCTACAT 60.107 40.000 0.00 0.00 0.00 2.29
4990 5813 6.568462 CGAAGCAAAATGAGTGAACCTACATT 60.568 38.462 0.00 0.00 34.99 2.71
4991 5814 6.259550 AGCAAAATGAGTGAACCTACATTC 57.740 37.500 0.00 0.00 32.84 2.67
4992 5815 6.006449 AGCAAAATGAGTGAACCTACATTCT 58.994 36.000 0.00 0.00 32.84 2.40
4993 5816 7.168219 AGCAAAATGAGTGAACCTACATTCTA 58.832 34.615 0.00 0.00 32.84 2.10
4994 5817 7.665559 AGCAAAATGAGTGAACCTACATTCTAA 59.334 33.333 0.00 0.00 32.84 2.10
4995 5818 8.296713 GCAAAATGAGTGAACCTACATTCTAAA 58.703 33.333 0.00 0.00 32.84 1.85
5031 5854 9.220635 CATACATTCGTATGTTGTAACCATTTG 57.779 33.333 13.12 0.00 46.70 2.32
5032 5855 7.441890 ACATTCGTATGTTGTAACCATTTGA 57.558 32.000 1.31 0.00 42.29 2.69
5033 5856 7.877003 ACATTCGTATGTTGTAACCATTTGAA 58.123 30.769 1.31 0.00 42.29 2.69
5034 5857 8.353684 ACATTCGTATGTTGTAACCATTTGAAA 58.646 29.630 1.31 0.00 42.29 2.69
5035 5858 9.352784 CATTCGTATGTTGTAACCATTTGAAAT 57.647 29.630 0.00 0.00 0.00 2.17
5036 5859 8.735303 TTCGTATGTTGTAACCATTTGAAATG 57.265 30.769 10.84 10.84 0.00 2.32
5037 5860 7.309177 TCGTATGTTGTAACCATTTGAAATGG 58.691 34.615 29.96 29.96 44.54 3.16
5038 5861 6.034470 CGTATGTTGTAACCATTTGAAATGGC 59.966 38.462 31.12 18.37 42.82 4.40
5039 5862 5.543507 TGTTGTAACCATTTGAAATGGCT 57.456 34.783 31.12 23.77 42.82 4.75
5040 5863 6.656632 TGTTGTAACCATTTGAAATGGCTA 57.343 33.333 31.12 22.78 42.82 3.93
5041 5864 6.686630 TGTTGTAACCATTTGAAATGGCTAG 58.313 36.000 31.12 12.47 42.82 3.42
5042 5865 6.491745 TGTTGTAACCATTTGAAATGGCTAGA 59.508 34.615 31.12 21.28 42.82 2.43
5043 5866 7.014711 TGTTGTAACCATTTGAAATGGCTAGAA 59.985 33.333 31.12 24.95 42.82 2.10
5044 5867 7.531857 TGTAACCATTTGAAATGGCTAGAAA 57.468 32.000 31.12 13.40 42.82 2.52
5045 5868 7.601856 TGTAACCATTTGAAATGGCTAGAAAG 58.398 34.615 31.12 10.19 42.82 2.62
5046 5869 6.916360 AACCATTTGAAATGGCTAGAAAGA 57.084 33.333 31.12 0.00 42.82 2.52
5047 5870 6.272822 ACCATTTGAAATGGCTAGAAAGAC 57.727 37.500 31.12 0.00 42.82 3.01
5049 5872 6.267471 ACCATTTGAAATGGCTAGAAAGACAA 59.733 34.615 31.12 0.00 46.32 3.18
5050 5873 7.153985 CCATTTGAAATGGCTAGAAAGACAAA 58.846 34.615 22.59 0.00 46.32 2.83
5051 5874 7.820872 CCATTTGAAATGGCTAGAAAGACAAAT 59.179 33.333 22.59 0.00 46.32 2.32
5052 5875 9.859427 CATTTGAAATGGCTAGAAAGACAAATA 57.141 29.630 9.98 0.00 46.32 1.40
5056 5879 9.859427 TGAAATGGCTAGAAAGACAAATATTTG 57.141 29.630 23.60 23.60 46.32 2.32
5057 5880 9.305925 GAAATGGCTAGAAAGACAAATATTTGG 57.694 33.333 27.43 12.85 46.32 3.28
5058 5881 6.773976 TGGCTAGAAAGACAAATATTTGGG 57.226 37.500 27.43 8.32 38.01 4.12
5059 5882 6.489603 TGGCTAGAAAGACAAATATTTGGGA 58.510 36.000 27.43 7.59 38.01 4.37
5060 5883 6.951198 TGGCTAGAAAGACAAATATTTGGGAA 59.049 34.615 27.43 8.61 38.01 3.97
5061 5884 7.093945 TGGCTAGAAAGACAAATATTTGGGAAC 60.094 37.037 27.43 16.80 38.01 3.62
5062 5885 6.967199 GCTAGAAAGACAAATATTTGGGAACG 59.033 38.462 27.43 11.81 42.34 3.95
5063 5886 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
5064 5887 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
5065 5888 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
5066 5889 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
5067 5890 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
5068 5891 3.010808 ACAAATATTTGGGAACGGAGGGA 59.989 43.478 27.43 0.00 42.34 4.20
5069 5892 3.577805 AATATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
5070 5893 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
5220 6043 1.291033 TCAGGGTCCATAGCCAGTAGT 59.709 52.381 0.00 0.00 46.32 2.73
5222 6045 2.628657 CAGGGTCCATAGCCAGTAGTAC 59.371 54.545 0.00 0.00 46.32 2.73
5223 6046 2.518834 AGGGTCCATAGCCAGTAGTACT 59.481 50.000 0.00 0.00 46.32 2.73
5224 6047 2.628657 GGGTCCATAGCCAGTAGTACTG 59.371 54.545 21.39 21.39 45.53 2.74
5246 6069 0.243907 GCAGCGGTACACAGAGAAGA 59.756 55.000 0.00 0.00 0.00 2.87
5265 6089 4.184079 AGAAAATGTCTTGGAGCAATGC 57.816 40.909 0.00 0.00 29.66 3.56
5272 6096 2.294233 GTCTTGGAGCAATGCTGTTCAA 59.706 45.455 14.48 13.05 39.88 2.69
5282 6106 2.727123 TGCTGTTCAAGGAAAGGTGA 57.273 45.000 0.00 0.00 0.00 4.02
5307 6131 3.427528 TGCAGAATCGTCGTTTCAAGTAC 59.572 43.478 16.24 0.00 0.00 2.73
5360 6188 7.571244 GCATCATCTTTTCTTGAACTCGTACAA 60.571 37.037 0.00 0.00 0.00 2.41
5371 6199 5.284079 TGAACTCGTACAAGTGGAAACTAC 58.716 41.667 0.00 0.00 0.00 2.73
5382 6210 3.560068 AGTGGAAACTACAAACTGCTTCG 59.440 43.478 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
357 358 7.676004 TGACTCTAACAACAATGAAGTATCCA 58.324 34.615 0.00 0.00 0.00 3.41
414 415 1.122019 ACAAAGACACGAGAGGGCCT 61.122 55.000 5.25 5.25 38.93 5.19
523 526 1.021968 AACCACTCGTCAAACTTGGC 58.978 50.000 0.00 0.00 0.00 4.52
605 1199 4.638421 ACGGGAACATGTACATTATGTTGG 59.362 41.667 16.07 8.90 45.82 3.77
672 1266 5.525378 AGAGGCGACATATTTGTTCTCATTC 59.475 40.000 0.00 1.13 35.79 2.67
677 1271 3.941483 CCAAGAGGCGACATATTTGTTCT 59.059 43.478 0.00 0.00 35.79 3.01
782 1376 6.857964 CACACCAGTTCACATCTATTTTTCAC 59.142 38.462 0.00 0.00 0.00 3.18
783 1377 6.016360 CCACACCAGTTCACATCTATTTTTCA 60.016 38.462 0.00 0.00 0.00 2.69
784 1378 6.381801 CCACACCAGTTCACATCTATTTTTC 58.618 40.000 0.00 0.00 0.00 2.29
797 1394 1.336240 GCAGAATTGCCACACCAGTTC 60.336 52.381 0.00 0.00 44.74 3.01
854 1484 2.533391 AATCGCTTTGCTGCCTTCGC 62.533 55.000 0.00 0.00 0.00 4.70
855 1485 0.726827 TAATCGCTTTGCTGCCTTCG 59.273 50.000 0.00 0.00 0.00 3.79
856 1486 1.740025 ACTAATCGCTTTGCTGCCTTC 59.260 47.619 0.00 0.00 0.00 3.46
861 1523 1.398390 GGTGGACTAATCGCTTTGCTG 59.602 52.381 0.00 0.00 0.00 4.41
872 1534 0.390124 GTCGGTGTGTGGTGGACTAA 59.610 55.000 0.00 0.00 0.00 2.24
873 1535 1.466025 GGTCGGTGTGTGGTGGACTA 61.466 60.000 0.00 0.00 0.00 2.59
902 1564 1.153168 CGGAATCGTGATGGGCCTT 60.153 57.895 4.53 0.00 0.00 4.35
949 1612 3.132481 GAGAGAGGGCTCGGCTTCG 62.132 68.421 0.00 0.00 45.98 3.79
958 1621 3.223589 GGCGAGGAGAGAGAGGGC 61.224 72.222 0.00 0.00 0.00 5.19
1209 1872 1.751927 GTAGAACGGGGAGAGGCGA 60.752 63.158 0.00 0.00 0.00 5.54
1295 1973 1.214589 GCGAGCTTACACTTCCGGA 59.785 57.895 0.00 0.00 0.00 5.14
1380 2058 5.180271 ACCTACAGATCGCCGAATTAAAAA 58.820 37.500 0.00 0.00 0.00 1.94
1389 2067 1.299468 GCAGACCTACAGATCGCCG 60.299 63.158 0.00 0.00 0.00 6.46
1443 2121 2.439507 GTGGTATCACCTCCATCACCAT 59.560 50.000 0.00 0.00 39.58 3.55
1474 2152 1.072159 GTCACTGGGTCAGCTTGCT 59.928 57.895 0.00 0.00 34.37 3.91
1475 2153 1.968540 GGTCACTGGGTCAGCTTGC 60.969 63.158 0.00 0.00 34.37 4.01
1476 2154 0.604780 CAGGTCACTGGGTCAGCTTG 60.605 60.000 0.00 0.00 41.13 4.01
1477 2155 1.757306 CAGGTCACTGGGTCAGCTT 59.243 57.895 0.00 0.00 41.13 3.74
1519 2197 7.667575 ATAGATCGCTCAATAACAGGGATAT 57.332 36.000 0.00 0.12 42.09 1.63
1520 2198 7.482169 AATAGATCGCTCAATAACAGGGATA 57.518 36.000 0.00 0.00 42.09 2.59
1521 2199 6.365970 AATAGATCGCTCAATAACAGGGAT 57.634 37.500 0.00 0.00 44.07 3.85
1553 2231 7.450903 ACAGATCAGATTGCATCATTCAGATA 58.549 34.615 0.00 0.00 34.43 1.98
1584 2262 3.591977 AGGCAGTAAACAGGGGAAACTAT 59.408 43.478 0.00 0.00 0.00 2.12
1611 2289 2.961526 AATCGTCCGACTAGCATTGT 57.038 45.000 0.00 0.00 0.00 2.71
1623 2301 3.568430 CCAGCCCCTAAAATAAATCGTCC 59.432 47.826 0.00 0.00 0.00 4.79
1626 2304 3.951680 ACACCAGCCCCTAAAATAAATCG 59.048 43.478 0.00 0.00 0.00 3.34
1698 2384 5.687285 GCACCACACTTTGAGTTTGAATAAG 59.313 40.000 0.00 0.00 27.60 1.73
1723 2409 9.120538 GTTGTATTAAGGCTGAAGGATAAATCA 57.879 33.333 0.00 0.00 0.00 2.57
1778 2466 4.990543 TCACAAGAGTAATTTCGTGCAG 57.009 40.909 0.00 0.00 30.95 4.41
1855 2543 2.355716 GGGCTAGAACCTTACATGTGCA 60.356 50.000 9.11 0.00 0.00 4.57
1914 2602 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
1915 2603 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
1916 2604 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
1917 2605 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1918 2606 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
1919 2607 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
1920 2608 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
1921 2609 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
1922 2610 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
1923 2611 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
1924 2612 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
1925 2613 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
1931 2619 9.880157 AAAGTTAGTACAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
1932 2620 8.788325 AAAGTTAGTACAAAGTTGAGACACTT 57.212 30.769 0.00 0.98 38.74 3.16
1933 2621 9.530633 CTAAAGTTAGTACAAAGTTGAGACACT 57.469 33.333 0.00 0.00 0.00 3.55
1934 2622 9.310716 ACTAAAGTTAGTACAAAGTTGAGACAC 57.689 33.333 1.81 0.00 41.92 3.67
1961 2649 9.216117 AGCGTCTCAAGTTTAGTACAATTTTAT 57.784 29.630 0.00 0.00 0.00 1.40
1962 2650 8.597662 AGCGTCTCAAGTTTAGTACAATTTTA 57.402 30.769 0.00 0.00 0.00 1.52
1963 2651 7.492352 AGCGTCTCAAGTTTAGTACAATTTT 57.508 32.000 0.00 0.00 0.00 1.82
1964 2652 7.492352 AAGCGTCTCAAGTTTAGTACAATTT 57.508 32.000 0.00 0.00 0.00 1.82
1965 2653 8.773404 ATAAGCGTCTCAAGTTTAGTACAATT 57.227 30.769 0.00 0.00 0.00 2.32
1966 2654 8.773404 AATAAGCGTCTCAAGTTTAGTACAAT 57.227 30.769 0.00 0.00 0.00 2.71
1967 2655 8.597662 AAATAAGCGTCTCAAGTTTAGTACAA 57.402 30.769 0.00 0.00 0.00 2.41
1968 2656 8.492748 CAAAATAAGCGTCTCAAGTTTAGTACA 58.507 33.333 0.00 0.00 0.00 2.90
1969 2657 7.955864 CCAAAATAAGCGTCTCAAGTTTAGTAC 59.044 37.037 0.00 0.00 0.00 2.73
1970 2658 7.118680 CCCAAAATAAGCGTCTCAAGTTTAGTA 59.881 37.037 0.00 0.00 0.00 1.82
1971 2659 6.072673 CCCAAAATAAGCGTCTCAAGTTTAGT 60.073 38.462 0.00 0.00 0.00 2.24
1972 2660 6.148811 TCCCAAAATAAGCGTCTCAAGTTTAG 59.851 38.462 0.00 0.00 0.00 1.85
1973 2661 5.998981 TCCCAAAATAAGCGTCTCAAGTTTA 59.001 36.000 0.00 0.00 0.00 2.01
1974 2662 4.825085 TCCCAAAATAAGCGTCTCAAGTTT 59.175 37.500 0.00 0.00 0.00 2.66
1975 2663 4.215613 GTCCCAAAATAAGCGTCTCAAGTT 59.784 41.667 0.00 0.00 0.00 2.66
1976 2664 3.751698 GTCCCAAAATAAGCGTCTCAAGT 59.248 43.478 0.00 0.00 0.00 3.16
1977 2665 3.181520 CGTCCCAAAATAAGCGTCTCAAG 60.182 47.826 0.00 0.00 0.00 3.02
1978 2666 2.739913 CGTCCCAAAATAAGCGTCTCAA 59.260 45.455 0.00 0.00 0.00 3.02
1979 2667 2.343101 CGTCCCAAAATAAGCGTCTCA 58.657 47.619 0.00 0.00 0.00 3.27
1980 2668 1.664151 CCGTCCCAAAATAAGCGTCTC 59.336 52.381 0.00 0.00 0.00 3.36
1981 2669 1.276989 TCCGTCCCAAAATAAGCGTCT 59.723 47.619 0.00 0.00 0.00 4.18
1982 2670 1.664151 CTCCGTCCCAAAATAAGCGTC 59.336 52.381 0.00 0.00 0.00 5.19
1983 2671 1.677820 CCTCCGTCCCAAAATAAGCGT 60.678 52.381 0.00 0.00 0.00 5.07
1984 2672 1.014352 CCTCCGTCCCAAAATAAGCG 58.986 55.000 0.00 0.00 0.00 4.68
1985 2673 1.064979 TCCCTCCGTCCCAAAATAAGC 60.065 52.381 0.00 0.00 0.00 3.09
1986 2674 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1987 2675 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1988 2676 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1989 2677 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
1990 2678 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
1991 2679 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
1992 2680 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
1993 2681 1.133575 CATAGTACTCCCTCCGTCCCA 60.134 57.143 0.00 0.00 0.00 4.37
1994 2682 1.618487 CATAGTACTCCCTCCGTCCC 58.382 60.000 0.00 0.00 0.00 4.46
1995 2683 0.960286 GCATAGTACTCCCTCCGTCC 59.040 60.000 0.00 0.00 0.00 4.79
1996 2684 1.984066 AGCATAGTACTCCCTCCGTC 58.016 55.000 0.00 0.00 0.00 4.79
1997 2685 3.810721 ATAGCATAGTACTCCCTCCGT 57.189 47.619 0.00 0.00 0.00 4.69
1998 2686 5.470047 AAAATAGCATAGTACTCCCTCCG 57.530 43.478 0.00 0.00 0.00 4.63
2023 2711 9.425577 CTAGAAGTCGAAAAGGTAGAAAAAGAT 57.574 33.333 0.00 0.00 0.00 2.40
2218 2906 3.454812 AGACTGGACCTGTACACAACTTT 59.545 43.478 3.67 0.00 0.00 2.66
2312 3000 5.400066 ACTCTCTTCTCTTTCAGTAAGGC 57.600 43.478 0.00 0.00 34.46 4.35
2448 3137 7.649370 TGTAGTATCTACTATCTGCACGTAC 57.351 40.000 8.13 0.00 40.55 3.67
2451 3140 7.365840 TCATGTAGTATCTACTATCTGCACG 57.634 40.000 8.13 0.00 40.55 5.34
2506 3278 5.398169 CAGCTAACACATAATTTTCCGCAA 58.602 37.500 0.00 0.00 0.00 4.85
2547 3319 8.731275 TTTAGCTGCAGCATTAGTAGAATTAA 57.269 30.769 38.24 20.44 45.16 1.40
2569 3341 4.060205 GTGAACCGCTGTAGTTTCCTTTA 58.940 43.478 0.00 0.00 0.00 1.85
2687 3459 1.972660 GAAGGTCATCCCCTCCACCG 61.973 65.000 0.00 0.00 32.13 4.94
2759 3531 1.949525 AGACATCAACACCAAGTGCAC 59.050 47.619 9.40 9.40 36.98 4.57
2764 3536 3.144506 AGCTCAAGACATCAACACCAAG 58.855 45.455 0.00 0.00 0.00 3.61
2766 3538 2.936919 AGCTCAAGACATCAACACCA 57.063 45.000 0.00 0.00 0.00 4.17
2818 3590 3.732212 TGCAACATAGCATACCTAGCAG 58.268 45.455 0.00 0.00 40.11 4.24
3136 3936 9.440761 AGAGGGAGTATGTAATATCTGTTCTTT 57.559 33.333 0.00 0.00 0.00 2.52
3199 3999 9.650539 ATCATAAGCACTGATCATAGAATGTAC 57.349 33.333 0.00 0.00 0.00 2.90
3200 4000 9.649167 CATCATAAGCACTGATCATAGAATGTA 57.351 33.333 0.00 0.00 31.00 2.29
3201 4001 8.155510 ACATCATAAGCACTGATCATAGAATGT 58.844 33.333 0.00 0.00 31.00 2.71
3219 4019 5.907866 TTCGTCCTACACAGACATCATAA 57.092 39.130 0.00 0.00 33.70 1.90
3237 4037 2.931320 GCTTCTGACGGAAAGGATTCGT 60.931 50.000 0.00 0.00 36.36 3.85
3238 4038 1.661112 GCTTCTGACGGAAAGGATTCG 59.339 52.381 0.00 0.00 36.36 3.34
3329 4129 4.211920 GGGATTTCGAATCCACCCAAATA 58.788 43.478 20.84 0.00 39.93 1.40
3570 4370 4.399004 AGCAAGTCAGGATTAGTAGCTG 57.601 45.455 0.00 0.00 0.00 4.24
3737 4545 1.421410 CGGCATAACGTGAGAGCCAC 61.421 60.000 16.91 0.00 45.47 5.01
3802 4610 4.187694 CTGCTGACTTTTCCTATGAGGTC 58.812 47.826 0.00 0.00 36.53 3.85
3919 4731 9.205719 TCTAGAGTACTACGACATGATGTATTC 57.794 37.037 0.00 1.98 0.00 1.75
4060 4875 2.708216 TCACTTGTTTGAGGTGCAGA 57.292 45.000 0.00 0.00 0.00 4.26
4072 4887 1.337823 GGCGTGTCCTGTATCACTTGT 60.338 52.381 0.00 0.00 33.07 3.16
4184 5003 1.325355 AGGTCTCCAAGAACGACGAA 58.675 50.000 0.00 0.00 36.93 3.85
4185 5004 1.325355 AAGGTCTCCAAGAACGACGA 58.675 50.000 0.00 0.00 36.93 4.20
4197 5016 0.536006 ACCACTGCAGCAAAGGTCTC 60.536 55.000 15.27 0.00 0.00 3.36
4198 5017 0.536006 GACCACTGCAGCAAAGGTCT 60.536 55.000 27.36 7.02 44.10 3.85
4200 5019 1.529244 GGACCACTGCAGCAAAGGT 60.529 57.895 15.27 16.58 34.76 3.50
4202 5021 2.620112 CCGGACCACTGCAGCAAAG 61.620 63.158 15.27 2.20 0.00 2.77
4205 5024 4.314440 GACCGGACCACTGCAGCA 62.314 66.667 15.27 0.00 0.00 4.41
4207 5026 3.302347 GAGGACCGGACCACTGCAG 62.302 68.421 24.99 13.48 0.00 4.41
4208 5027 3.311110 GAGGACCGGACCACTGCA 61.311 66.667 24.99 0.00 0.00 4.41
4209 5028 2.997897 AGAGGACCGGACCACTGC 60.998 66.667 24.99 10.82 30.27 4.40
4221 5040 4.344102 CACTTATTATCGGGGTTCAGAGGA 59.656 45.833 0.00 0.00 0.00 3.71
4233 5052 6.791887 ATGAATGAGCCACACTTATTATCG 57.208 37.500 0.00 0.00 34.89 2.92
4499 5321 0.914644 CTCATCTTCCCTCCTTGGCA 59.085 55.000 0.00 0.00 0.00 4.92
4562 5384 0.107897 TATCGAGGCCACGCATTGTT 60.108 50.000 18.51 1.02 0.00 2.83
4566 5388 2.027605 CGTATCGAGGCCACGCAT 59.972 61.111 18.51 13.97 0.00 4.73
4612 5434 9.360093 CAAGATGACGAAGAAAAGAACTACTAT 57.640 33.333 0.00 0.00 0.00 2.12
4634 5456 9.605275 CAAGATAATCTACACCTCAAATCAAGA 57.395 33.333 0.00 0.00 0.00 3.02
4635 5457 8.834465 CCAAGATAATCTACACCTCAAATCAAG 58.166 37.037 0.00 0.00 0.00 3.02
4636 5458 7.775093 CCCAAGATAATCTACACCTCAAATCAA 59.225 37.037 0.00 0.00 0.00 2.57
4637 5459 7.282585 CCCAAGATAATCTACACCTCAAATCA 58.717 38.462 0.00 0.00 0.00 2.57
4638 5460 6.712547 CCCCAAGATAATCTACACCTCAAATC 59.287 42.308 0.00 0.00 0.00 2.17
4639 5461 6.160459 ACCCCAAGATAATCTACACCTCAAAT 59.840 38.462 0.00 0.00 0.00 2.32
4640 5462 5.491078 ACCCCAAGATAATCTACACCTCAAA 59.509 40.000 0.00 0.00 0.00 2.69
4641 5463 5.036916 ACCCCAAGATAATCTACACCTCAA 58.963 41.667 0.00 0.00 0.00 3.02
4642 5464 4.631234 ACCCCAAGATAATCTACACCTCA 58.369 43.478 0.00 0.00 0.00 3.86
4643 5465 5.279556 GCTACCCCAAGATAATCTACACCTC 60.280 48.000 0.00 0.00 0.00 3.85
4653 5475 2.091499 TCCTCTCGCTACCCCAAGATAA 60.091 50.000 0.00 0.00 0.00 1.75
4696 5518 0.454600 TGCGCTACTAGCAGTACCAC 59.545 55.000 9.73 0.00 42.58 4.16
4726 5548 0.546598 CCATTCTCCTGTGTACCCCC 59.453 60.000 0.00 0.00 0.00 5.40
4775 5597 0.961753 GAATGGCGAATTGGGGATCC 59.038 55.000 1.92 1.92 0.00 3.36
4780 5602 1.331756 CGAGAAGAATGGCGAATTGGG 59.668 52.381 0.00 0.00 0.00 4.12
4860 5683 4.362677 ACAGACAGGGCTAGAAAGGATAA 58.637 43.478 0.00 0.00 0.00 1.75
4896 5719 3.641906 CGGAGGGAGTACTTCATGGTAAT 59.358 47.826 2.92 0.00 0.00 1.89
4906 5729 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
4907 5730 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
4908 5731 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
4909 5732 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
4910 5733 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4911 5734 5.703730 ACAAATATTTAGGAACGGAGGGA 57.296 39.130 0.00 0.00 0.00 4.20
4912 5735 6.769134 AAACAAATATTTAGGAACGGAGGG 57.231 37.500 0.00 0.00 0.00 4.30
4913 5736 8.520351 AGAAAAACAAATATTTAGGAACGGAGG 58.480 33.333 0.00 0.00 0.00 4.30
4940 5763 9.355215 CGTATGTAGTCACTTGTTAAAATCTCT 57.645 33.333 0.00 0.00 0.00 3.10
4941 5764 9.350357 TCGTATGTAGTCACTTGTTAAAATCTC 57.650 33.333 0.00 0.00 0.00 2.75
4942 5765 9.701098 TTCGTATGTAGTCACTTGTTAAAATCT 57.299 29.630 0.00 0.00 0.00 2.40
4943 5766 9.953825 CTTCGTATGTAGTCACTTGTTAAAATC 57.046 33.333 0.00 0.00 0.00 2.17
4944 5767 8.440833 GCTTCGTATGTAGTCACTTGTTAAAAT 58.559 33.333 0.00 0.00 0.00 1.82
4945 5768 7.438757 TGCTTCGTATGTAGTCACTTGTTAAAA 59.561 33.333 0.00 0.00 0.00 1.52
4946 5769 6.924612 TGCTTCGTATGTAGTCACTTGTTAAA 59.075 34.615 0.00 0.00 0.00 1.52
4947 5770 6.448852 TGCTTCGTATGTAGTCACTTGTTAA 58.551 36.000 0.00 0.00 0.00 2.01
4948 5771 6.016213 TGCTTCGTATGTAGTCACTTGTTA 57.984 37.500 0.00 0.00 0.00 2.41
4949 5772 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
4950 5773 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
4951 5774 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
4952 5775 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
4953 5776 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
4954 5777 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
4955 5778 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
4956 5779 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
4957 5780 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
4958 5781 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
4959 5782 6.128391 GGTTCACTCATTTTGCTTCGTATGTA 60.128 38.462 0.00 0.00 0.00 2.29
4960 5783 5.334879 GGTTCACTCATTTTGCTTCGTATGT 60.335 40.000 0.00 0.00 0.00 2.29
4961 5784 5.088739 GGTTCACTCATTTTGCTTCGTATG 58.911 41.667 0.00 0.00 0.00 2.39
4962 5785 5.003804 AGGTTCACTCATTTTGCTTCGTAT 58.996 37.500 0.00 0.00 0.00 3.06
4963 5786 4.385825 AGGTTCACTCATTTTGCTTCGTA 58.614 39.130 0.00 0.00 0.00 3.43
4964 5787 3.214328 AGGTTCACTCATTTTGCTTCGT 58.786 40.909 0.00 0.00 0.00 3.85
4965 5788 3.904136 AGGTTCACTCATTTTGCTTCG 57.096 42.857 0.00 0.00 0.00 3.79
4966 5789 5.689383 TGTAGGTTCACTCATTTTGCTTC 57.311 39.130 0.00 0.00 0.00 3.86
4967 5790 6.491403 AGAATGTAGGTTCACTCATTTTGCTT 59.509 34.615 0.00 0.00 31.53 3.91
4968 5791 6.006449 AGAATGTAGGTTCACTCATTTTGCT 58.994 36.000 0.00 0.00 31.53 3.91
4969 5792 6.259550 AGAATGTAGGTTCACTCATTTTGC 57.740 37.500 0.00 0.00 31.53 3.68
5006 5829 9.168451 TCAAATGGTTACAACATACGAATGTAT 57.832 29.630 0.00 0.00 45.79 2.29
5007 5830 8.549338 TCAAATGGTTACAACATACGAATGTA 57.451 30.769 0.00 0.00 45.79 2.29
5009 5832 8.735303 TTTCAAATGGTTACAACATACGAATG 57.265 30.769 0.00 0.00 39.17 2.67
5010 5833 9.352784 CATTTCAAATGGTTACAACATACGAAT 57.647 29.630 1.73 0.00 0.00 3.34
5011 5834 7.810282 CCATTTCAAATGGTTACAACATACGAA 59.190 33.333 19.80 0.00 34.56 3.85
5012 5835 7.309177 CCATTTCAAATGGTTACAACATACGA 58.691 34.615 19.80 0.00 34.56 3.43
5013 5836 6.034470 GCCATTTCAAATGGTTACAACATACG 59.966 38.462 26.80 1.13 41.17 3.06
5014 5837 7.096551 AGCCATTTCAAATGGTTACAACATAC 58.903 34.615 26.80 9.02 41.17 2.39
5015 5838 7.238486 AGCCATTTCAAATGGTTACAACATA 57.762 32.000 26.80 0.00 41.17 2.29
5016 5839 6.112927 AGCCATTTCAAATGGTTACAACAT 57.887 33.333 26.80 4.32 41.17 2.71
5017 5840 5.543507 AGCCATTTCAAATGGTTACAACA 57.456 34.783 26.80 0.00 41.17 3.33
5018 5841 6.919721 TCTAGCCATTTCAAATGGTTACAAC 58.080 36.000 26.80 11.62 41.17 3.32
5019 5842 7.531857 TTCTAGCCATTTCAAATGGTTACAA 57.468 32.000 26.80 17.51 41.17 2.41
5020 5843 7.450014 TCTTTCTAGCCATTTCAAATGGTTACA 59.550 33.333 26.80 12.93 41.17 2.41
5021 5844 7.755373 GTCTTTCTAGCCATTTCAAATGGTTAC 59.245 37.037 26.80 13.24 41.17 2.50
5022 5845 7.450014 TGTCTTTCTAGCCATTTCAAATGGTTA 59.550 33.333 26.80 23.75 41.17 2.85
5023 5846 6.267471 TGTCTTTCTAGCCATTTCAAATGGTT 59.733 34.615 26.80 23.90 41.17 3.67
5024 5847 5.774690 TGTCTTTCTAGCCATTTCAAATGGT 59.225 36.000 26.80 17.08 41.17 3.55
5025 5848 6.271488 TGTCTTTCTAGCCATTTCAAATGG 57.729 37.500 23.16 23.16 41.99 3.16
5026 5849 8.767478 ATTTGTCTTTCTAGCCATTTCAAATG 57.233 30.769 2.80 2.80 33.66 2.32
5030 5853 9.859427 CAAATATTTGTCTTTCTAGCCATTTCA 57.141 29.630 18.32 0.00 33.59 2.69
5031 5854 9.305925 CCAAATATTTGTCTTTCTAGCCATTTC 57.694 33.333 23.24 0.00 36.45 2.17
5032 5855 8.260114 CCCAAATATTTGTCTTTCTAGCCATTT 58.740 33.333 23.24 0.00 36.45 2.32
5033 5856 7.619302 TCCCAAATATTTGTCTTTCTAGCCATT 59.381 33.333 23.24 0.00 36.45 3.16
5034 5857 7.125391 TCCCAAATATTTGTCTTTCTAGCCAT 58.875 34.615 23.24 0.00 36.45 4.40
5035 5858 6.489603 TCCCAAATATTTGTCTTTCTAGCCA 58.510 36.000 23.24 0.00 36.45 4.75
5036 5859 7.258441 GTTCCCAAATATTTGTCTTTCTAGCC 58.742 38.462 23.24 0.99 36.45 3.93
5037 5860 6.967199 CGTTCCCAAATATTTGTCTTTCTAGC 59.033 38.462 23.24 6.16 36.45 3.42
5038 5861 7.335924 TCCGTTCCCAAATATTTGTCTTTCTAG 59.664 37.037 23.24 8.23 36.45 2.43
5039 5862 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
5040 5863 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
5041 5864 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
5042 5865 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
5043 5866 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
5044 5867 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
5045 5868 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
5046 5869 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
5047 5870 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
5048 5871 3.268595 ACTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
5049 5872 2.850568 ACTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
5050 5873 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
5051 5874 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5052 5875 1.558294 GTACTCCCTCCGTTCCCAAAT 59.442 52.381 0.00 0.00 0.00 2.32
5053 5876 0.978907 GTACTCCCTCCGTTCCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
5054 5877 0.115745 AGTACTCCCTCCGTTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
5055 5878 1.002069 TAGTACTCCCTCCGTTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
5056 5879 1.689984 CTAGTACTCCCTCCGTTCCC 58.310 60.000 0.00 0.00 0.00 3.97
5057 5880 1.031235 GCTAGTACTCCCTCCGTTCC 58.969 60.000 0.00 0.00 0.00 3.62
5058 5881 2.055684 AGCTAGTACTCCCTCCGTTC 57.944 55.000 0.00 0.00 0.00 3.95
5059 5882 3.659183 TTAGCTAGTACTCCCTCCGTT 57.341 47.619 0.00 0.00 0.00 4.44
5060 5883 3.880168 ATTAGCTAGTACTCCCTCCGT 57.120 47.619 0.00 0.00 0.00 4.69
5061 5884 4.400120 AGAATTAGCTAGTACTCCCTCCG 58.600 47.826 0.00 0.00 0.00 4.63
5062 5885 5.386924 TGAGAATTAGCTAGTACTCCCTCC 58.613 45.833 0.00 0.00 0.00 4.30
5063 5886 6.717540 TCATGAGAATTAGCTAGTACTCCCTC 59.282 42.308 0.00 8.50 0.00 4.30
5064 5887 6.615617 TCATGAGAATTAGCTAGTACTCCCT 58.384 40.000 0.00 0.00 0.00 4.20
5065 5888 6.902771 TCATGAGAATTAGCTAGTACTCCC 57.097 41.667 0.00 0.00 0.00 4.30
5066 5889 9.771534 AATTTCATGAGAATTAGCTAGTACTCC 57.228 33.333 0.00 0.00 32.89 3.85
5103 5926 2.581354 CGGAGGGCCAGACTGAAG 59.419 66.667 6.18 0.00 0.00 3.02
5150 5973 4.836825 TCTACAGGGCAAATCAGAAGAAG 58.163 43.478 0.00 0.00 0.00 2.85
5151 5974 4.908601 TCTACAGGGCAAATCAGAAGAA 57.091 40.909 0.00 0.00 0.00 2.52
5153 5976 4.774124 TCATCTACAGGGCAAATCAGAAG 58.226 43.478 0.00 0.00 0.00 2.85
5154 5977 4.842531 TCATCTACAGGGCAAATCAGAA 57.157 40.909 0.00 0.00 0.00 3.02
5157 5980 3.117776 AGCATCATCTACAGGGCAAATCA 60.118 43.478 0.00 0.00 0.00 2.57
5163 5986 0.888285 GCCAGCATCATCTACAGGGC 60.888 60.000 0.00 0.00 0.00 5.19
5220 6043 1.290955 GTGTACCGCTGCACCAGTA 59.709 57.895 0.00 0.00 33.43 2.74
5222 6045 2.029288 CTGTGTACCGCTGCACCAG 61.029 63.158 0.00 0.00 34.94 4.00
5223 6046 2.030412 CTGTGTACCGCTGCACCA 59.970 61.111 0.00 0.00 34.94 4.17
5224 6047 1.738099 CTCTGTGTACCGCTGCACC 60.738 63.158 0.00 0.00 34.94 5.01
5246 6069 3.322828 ACAGCATTGCTCCAAGACATTTT 59.677 39.130 8.54 0.00 36.40 1.82
5265 6089 3.243201 GCAAGTCACCTTTCCTTGAACAG 60.243 47.826 0.00 0.00 38.23 3.16
5272 6096 3.416156 GATTCTGCAAGTCACCTTTCCT 58.584 45.455 0.00 0.00 33.76 3.36
5282 6106 2.479837 TGAAACGACGATTCTGCAAGT 58.520 42.857 17.23 0.00 33.76 3.16
5321 6145 0.396139 ATGATGCACCCGCCAGATTT 60.396 50.000 0.00 0.00 37.32 2.17
5322 6146 0.820891 GATGATGCACCCGCCAGATT 60.821 55.000 0.00 0.00 37.32 2.40
5323 6147 1.228063 GATGATGCACCCGCCAGAT 60.228 57.895 0.00 0.00 37.32 2.90
5360 6188 3.560068 CGAAGCAGTTTGTAGTTTCCACT 59.440 43.478 0.00 0.00 36.99 4.00
5382 6210 5.106948 TGAGAAATTTCACTCGAGTTCATGC 60.107 40.000 17.26 2.50 36.11 4.06
5443 6282 1.283029 TGCCTCAGTAGGTAGGTACGT 59.717 52.381 0.00 0.00 45.64 3.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.