Multiple sequence alignment - TraesCS5D01G414400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G414400 chr5D 100.000 5617 0 0 1 5617 476833224 476827608 0.000000e+00 10373.0
1 TraesCS5D01G414400 chr5D 92.419 277 6 8 1643 1910 334061017 334061287 1.140000e-101 381.0
2 TraesCS5D01G414400 chr5D 94.030 201 11 1 1323 1523 334059166 334059365 2.540000e-78 303.0
3 TraesCS5D01G414400 chr5D 85.641 195 25 2 3507 3699 425215636 425215829 9.540000e-48 202.0
4 TraesCS5D01G414400 chr5A 90.310 4200 181 93 855 4932 596370731 596366636 0.000000e+00 5293.0
5 TraesCS5D01G414400 chr5A 89.189 851 40 30 1 827 596371621 596370799 0.000000e+00 1014.0
6 TraesCS5D01G414400 chr5A 86.653 472 44 16 4946 5409 596366650 596366190 6.490000e-139 505.0
7 TraesCS5D01G414400 chr5B 92.054 2668 117 44 2636 5225 584613526 584610876 0.000000e+00 3664.0
8 TraesCS5D01G414400 chr5B 89.573 1851 83 36 826 2638 584615438 584613660 0.000000e+00 2248.0
9 TraesCS5D01G414400 chr5B 86.171 875 42 38 1 827 584616308 584615465 0.000000e+00 872.0
10 TraesCS5D01G414400 chr5B 89.373 367 10 4 5278 5617 584610880 584610516 8.640000e-118 435.0
11 TraesCS5D01G414400 chr5B 86.768 393 17 10 4648 5010 584607518 584607131 6.780000e-109 405.0
12 TraesCS5D01G414400 chr5B 88.199 322 21 8 5087 5406 584607111 584606805 8.890000e-98 368.0
13 TraesCS5D01G414400 chr7D 89.728 331 29 3 1323 1653 229747551 229747226 8.700000e-113 418.0
14 TraesCS5D01G414400 chr7D 92.058 277 7 8 1643 1910 229746845 229746575 5.310000e-100 375.0
15 TraesCS5D01G414400 chr7D 81.119 143 16 5 5083 5223 188540967 188540834 2.770000e-18 104.0
16 TraesCS5D01G414400 chr6A 89.728 331 29 3 1323 1653 396381775 396382100 8.700000e-113 418.0
17 TraesCS5D01G414400 chr6A 91.304 276 11 6 1643 1910 396382482 396382752 1.150000e-96 364.0
18 TraesCS5D01G414400 chr4D 89.426 331 30 3 1323 1653 471652089 471651764 4.050000e-111 412.0
19 TraesCS5D01G414400 chr4D 90.614 277 11 8 1643 1910 471651382 471651112 2.490000e-93 353.0
20 TraesCS5D01G414400 chr7B 87.234 188 21 3 3514 3699 604280376 604280562 1.590000e-50 211.0
21 TraesCS5D01G414400 chr7B 86.154 195 24 3 3507 3699 532453921 532453728 2.050000e-49 207.0
22 TraesCS5D01G414400 chr7B 79.487 156 19 7 5071 5222 332313022 332312876 1.290000e-16 99.0
23 TraesCS5D01G414400 chr3B 85.641 195 25 2 3507 3699 828473050 828473243 9.540000e-48 202.0
24 TraesCS5D01G414400 chr2B 86.170 188 23 2 3514 3699 753390787 753390973 3.430000e-47 200.0
25 TraesCS5D01G414400 chr7A 85.128 195 26 3 3507 3699 474141683 474141490 4.440000e-46 196.0
26 TraesCS5D01G414400 chr2D 85.946 185 23 2 3517 3699 638013309 638013492 1.600000e-45 195.0
27 TraesCS5D01G414400 chr1D 84.672 137 16 3 5081 5214 471293160 471293294 1.270000e-26 132.0
28 TraesCS5D01G414400 chr3A 84.848 99 11 4 5045 5141 716782723 716782627 4.630000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G414400 chr5D 476827608 476833224 5616 True 10373.000000 10373 100.000000 1 5617 1 chr5D.!!$R1 5616
1 TraesCS5D01G414400 chr5D 334059166 334061287 2121 False 342.000000 381 93.224500 1323 1910 2 chr5D.!!$F2 587
2 TraesCS5D01G414400 chr5A 596366190 596371621 5431 True 2270.666667 5293 88.717333 1 5409 3 chr5A.!!$R1 5408
3 TraesCS5D01G414400 chr5B 584606805 584616308 9503 True 1332.000000 3664 88.689667 1 5617 6 chr5B.!!$R1 5616
4 TraesCS5D01G414400 chr7D 229746575 229747551 976 True 396.500000 418 90.893000 1323 1910 2 chr7D.!!$R2 587
5 TraesCS5D01G414400 chr6A 396381775 396382752 977 False 391.000000 418 90.516000 1323 1910 2 chr6A.!!$F1 587
6 TraesCS5D01G414400 chr4D 471651112 471652089 977 True 382.500000 412 90.020000 1323 1910 2 chr4D.!!$R1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
701 750 0.107214 AGGACAGCGAGAGAGAGAGG 60.107 60.0 0.00 0.0 0.00 3.69 F
702 751 0.107410 GGACAGCGAGAGAGAGAGGA 60.107 60.0 0.00 0.0 0.00 3.71 F
1259 1367 0.109723 TTTGTCCCGCCTAAGCAAGT 59.890 50.0 0.00 0.0 39.83 3.16 F
1331 1439 0.165944 AAAGCGAGATTGTTTCCGCG 59.834 50.0 0.00 0.0 43.99 6.46 F
2855 4774 0.549469 AGATGGTGAGATGCATGGCA 59.451 50.0 2.46 0.0 44.86 4.92 F
3372 5291 0.113190 CTCCCTGGCCCAAGAAGTTT 59.887 55.0 0.00 0.0 0.00 2.66 F
4118 6063 1.079503 GCACGTGTCCTGAGGAAATC 58.920 55.0 18.38 0.0 31.38 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2177 3951 1.675641 GGGAGACAATGCAGGCGTT 60.676 57.895 0.00 0.0 0.00 4.84 R
2178 3952 2.045926 GGGAGACAATGCAGGCGT 60.046 61.111 0.00 0.0 0.00 5.68 R
2855 4774 1.134491 GCGAGTTTGCAGTATACCCCT 60.134 52.381 0.00 0.0 34.15 4.79 R
3098 5017 1.482593 ACATCTCTTAGCCTCCGGTTG 59.517 52.381 0.00 0.0 0.00 3.77 R
4028 5973 0.178995 TGAGTGTGCATGGCTTGGAA 60.179 50.000 2.33 0.0 0.00 3.53 R
4524 6492 0.755686 ATGATCTTGCTCGACCTCCC 59.244 55.000 0.00 0.0 0.00 4.30 R
5558 11480 0.035534 AACCCACATGCATGCGAGTA 60.036 50.000 26.53 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.126343 ACGAGCAACGATTAATCAAACCC 59.874 43.478 15.57 0.07 45.77 4.11
59 60 1.399089 CGATTAATCAAACCCGGCGTT 59.601 47.619 15.57 0.00 35.70 4.84
77 78 4.398247 GCGTTTTCTTGTCAGATTAGCAG 58.602 43.478 0.00 0.00 0.00 4.24
244 259 6.734137 CAGAAAGCCTAACACACAAATAACA 58.266 36.000 0.00 0.00 0.00 2.41
253 268 2.816087 CACACAAATAACAGAGCTGGCT 59.184 45.455 0.00 0.00 34.19 4.75
254 269 2.816087 ACACAAATAACAGAGCTGGCTG 59.184 45.455 0.00 0.00 41.63 4.85
256 271 2.224867 ACAAATAACAGAGCTGGCTGGT 60.225 45.455 7.30 2.97 40.20 4.00
257 272 3.009033 ACAAATAACAGAGCTGGCTGGTA 59.991 43.478 2.89 2.89 41.87 3.25
258 273 2.990066 ATAACAGAGCTGGCTGGTAC 57.010 50.000 2.47 0.00 40.59 3.34
259 274 1.938585 TAACAGAGCTGGCTGGTACT 58.061 50.000 7.30 0.00 40.20 2.73
261 276 0.833834 ACAGAGCTGGCTGGTACTGT 60.834 55.000 16.58 16.58 40.20 3.55
271 289 5.753921 GCTGGCTGGTACTGTAGTATAAAAG 59.246 44.000 0.00 0.00 32.54 2.27
272 290 6.629739 GCTGGCTGGTACTGTAGTATAAAAGT 60.630 42.308 0.00 0.00 32.54 2.66
273 291 7.248743 TGGCTGGTACTGTAGTATAAAAGTT 57.751 36.000 0.00 0.00 32.54 2.66
274 292 7.101054 TGGCTGGTACTGTAGTATAAAAGTTG 58.899 38.462 0.00 0.00 32.54 3.16
275 293 6.036844 GGCTGGTACTGTAGTATAAAAGTTGC 59.963 42.308 0.00 0.00 32.54 4.17
276 294 6.817140 GCTGGTACTGTAGTATAAAAGTTGCT 59.183 38.462 0.00 0.00 32.54 3.91
355 391 6.942005 TGATATGATATGATTTTCGTGGGCTT 59.058 34.615 0.00 0.00 0.00 4.35
368 404 0.260230 TGGGCTTGGTGAAAAGGTGA 59.740 50.000 0.00 0.00 0.00 4.02
376 412 2.174639 TGGTGAAAAGGTGATGTGGACT 59.825 45.455 0.00 0.00 0.00 3.85
390 426 1.079266 GGACTGTGAGCTGAGCTGG 60.079 63.158 13.71 1.50 39.88 4.85
494 537 3.295228 CTTTTCGCTCGCCGGTGTG 62.295 63.158 16.01 14.22 37.59 3.82
577 626 1.544314 GGGTTCTTCTTGCAGAGCAGT 60.544 52.381 0.00 0.00 40.61 4.40
581 630 1.417517 TCTTCTTGCAGAGCAGTTGGA 59.582 47.619 0.00 0.00 40.61 3.53
582 631 1.805345 CTTCTTGCAGAGCAGTTGGAG 59.195 52.381 0.00 0.00 40.61 3.86
583 632 1.051008 TCTTGCAGAGCAGTTGGAGA 58.949 50.000 0.00 0.00 40.61 3.71
634 683 2.331132 GCTCGCTTGCTTGCCTCTT 61.331 57.895 0.00 0.00 0.00 2.85
647 696 0.261696 GCCTCTTCCTCTCCCTCTCT 59.738 60.000 0.00 0.00 0.00 3.10
656 705 2.105649 CCTCTCCCTCTCTAAAATGGCC 59.894 54.545 0.00 0.00 0.00 5.36
684 733 3.199880 AGTTCAGTTGTTGACCTGAGG 57.800 47.619 0.00 0.00 34.94 3.86
685 734 2.771943 AGTTCAGTTGTTGACCTGAGGA 59.228 45.455 4.99 0.00 34.94 3.71
686 735 2.872858 GTTCAGTTGTTGACCTGAGGAC 59.127 50.000 4.99 0.00 34.94 3.85
688 737 2.103094 TCAGTTGTTGACCTGAGGACAG 59.897 50.000 4.99 0.00 43.12 3.51
689 738 1.202698 AGTTGTTGACCTGAGGACAGC 60.203 52.381 4.99 8.37 42.25 4.40
691 740 1.112916 TGTTGACCTGAGGACAGCGA 61.113 55.000 4.99 0.00 42.25 4.93
694 743 0.962855 TGACCTGAGGACAGCGAGAG 60.963 60.000 4.99 0.00 42.25 3.20
695 744 0.678366 GACCTGAGGACAGCGAGAGA 60.678 60.000 4.99 0.00 42.25 3.10
696 745 0.679640 ACCTGAGGACAGCGAGAGAG 60.680 60.000 4.99 0.00 42.25 3.20
697 746 0.393673 CCTGAGGACAGCGAGAGAGA 60.394 60.000 0.00 0.00 42.25 3.10
698 747 1.016627 CTGAGGACAGCGAGAGAGAG 58.983 60.000 0.00 0.00 37.33 3.20
699 748 0.615850 TGAGGACAGCGAGAGAGAGA 59.384 55.000 0.00 0.00 0.00 3.10
700 749 1.299541 GAGGACAGCGAGAGAGAGAG 58.700 60.000 0.00 0.00 0.00 3.20
701 750 0.107214 AGGACAGCGAGAGAGAGAGG 60.107 60.000 0.00 0.00 0.00 3.69
702 751 0.107410 GGACAGCGAGAGAGAGAGGA 60.107 60.000 0.00 0.00 0.00 3.71
703 752 1.299541 GACAGCGAGAGAGAGAGGAG 58.700 60.000 0.00 0.00 0.00 3.69
712 761 2.127708 GAGAGAGAGGAGGAGAGAGGT 58.872 57.143 0.00 0.00 0.00 3.85
797 846 2.817396 GCACTTGGAGCTCCTCGC 60.817 66.667 32.28 23.51 36.82 5.03
837 920 2.832733 CTCCTCCCTCCGAGTAAGTTTT 59.167 50.000 0.00 0.00 36.82 2.43
901 996 1.255667 TTGTCTCCCGTGCCCTAGAC 61.256 60.000 0.00 0.00 39.04 2.59
907 1004 1.686110 CCGTGCCCTAGACCTTCCT 60.686 63.158 0.00 0.00 0.00 3.36
910 1007 1.409802 CGTGCCCTAGACCTTCCTCTA 60.410 57.143 0.00 0.00 0.00 2.43
942 1039 1.370900 GTTTTGCTGCTGCTCACGG 60.371 57.895 17.00 0.00 40.48 4.94
948 1045 2.591429 TGCTGCTCACGGTGGTTG 60.591 61.111 8.50 0.65 0.00 3.77
949 1046 4.030452 GCTGCTCACGGTGGTTGC 62.030 66.667 8.50 10.84 0.00 4.17
950 1047 2.281070 CTGCTCACGGTGGTTGCT 60.281 61.111 8.50 0.00 0.00 3.91
953 1050 2.281070 CTCACGGTGGTTGCTGCT 60.281 61.111 8.50 0.00 0.00 4.24
954 1051 2.591429 TCACGGTGGTTGCTGCTG 60.591 61.111 8.50 0.00 0.00 4.41
955 1052 4.332637 CACGGTGGTTGCTGCTGC 62.333 66.667 8.89 8.89 40.20 5.25
956 1053 4.569180 ACGGTGGTTGCTGCTGCT 62.569 61.111 17.00 0.00 40.48 4.24
958 1055 3.368571 GGTGGTTGCTGCTGCTCC 61.369 66.667 17.00 17.56 40.48 4.70
959 1056 3.368571 GTGGTTGCTGCTGCTCCC 61.369 66.667 17.00 15.43 40.48 4.30
962 1059 3.730761 GTTGCTGCTGCTCCCGTG 61.731 66.667 17.00 0.00 40.48 4.94
972 1069 2.669569 CTCCCGTGCCCTGTGTTG 60.670 66.667 0.00 0.00 0.00 3.33
1093 1190 1.219646 GCGTTCCAACAGGTTCGTTA 58.780 50.000 0.00 0.00 0.00 3.18
1094 1191 1.193874 GCGTTCCAACAGGTTCGTTAG 59.806 52.381 0.00 0.00 0.00 2.34
1095 1192 2.476821 CGTTCCAACAGGTTCGTTAGT 58.523 47.619 0.00 0.00 0.00 2.24
1096 1193 3.641648 CGTTCCAACAGGTTCGTTAGTA 58.358 45.455 0.00 0.00 0.00 1.82
1113 1219 1.740025 AGTAGCGCTGAAAGATTTGCC 59.260 47.619 22.90 0.00 34.07 4.52
1119 1226 1.542915 GCTGAAAGATTTGCCTCTGCA 59.457 47.619 0.00 0.00 41.35 4.41
1239 1347 2.800544 GCTCTACGCTTCAGACAAAACA 59.199 45.455 0.00 0.00 35.14 2.83
1259 1367 0.109723 TTTGTCCCGCCTAAGCAAGT 59.890 50.000 0.00 0.00 39.83 3.16
1303 1411 2.859538 CGCAGCTTCAACATTGTGTTTT 59.140 40.909 0.00 0.00 38.77 2.43
1304 1412 3.301963 CGCAGCTTCAACATTGTGTTTTG 60.302 43.478 0.00 0.00 38.77 2.44
1306 1414 4.492895 GCAGCTTCAACATTGTGTTTTGTG 60.493 41.667 0.00 0.00 38.77 3.33
1307 1415 4.626604 CAGCTTCAACATTGTGTTTTGTGT 59.373 37.500 0.00 0.00 38.77 3.72
1308 1416 4.626604 AGCTTCAACATTGTGTTTTGTGTG 59.373 37.500 0.00 0.00 38.77 3.82
1309 1417 4.201705 GCTTCAACATTGTGTTTTGTGTGG 60.202 41.667 0.00 0.00 38.77 4.17
1310 1418 4.527509 TCAACATTGTGTTTTGTGTGGT 57.472 36.364 0.00 0.00 38.77 4.16
1311 1419 4.240888 TCAACATTGTGTTTTGTGTGGTG 58.759 39.130 0.00 0.00 38.77 4.17
1312 1420 4.021981 TCAACATTGTGTTTTGTGTGGTGA 60.022 37.500 0.00 0.00 38.77 4.02
1313 1421 4.527509 ACATTGTGTTTTGTGTGGTGAA 57.472 36.364 0.00 0.00 0.00 3.18
1314 1422 4.887748 ACATTGTGTTTTGTGTGGTGAAA 58.112 34.783 0.00 0.00 0.00 2.69
1315 1423 4.928615 ACATTGTGTTTTGTGTGGTGAAAG 59.071 37.500 0.00 0.00 0.00 2.62
1316 1424 2.953020 TGTGTTTTGTGTGGTGAAAGC 58.047 42.857 0.00 0.00 0.00 3.51
1317 1425 1.917303 GTGTTTTGTGTGGTGAAAGCG 59.083 47.619 0.00 0.00 36.92 4.68
1318 1426 1.813178 TGTTTTGTGTGGTGAAAGCGA 59.187 42.857 0.00 0.00 36.92 4.93
1319 1427 2.159448 TGTTTTGTGTGGTGAAAGCGAG 60.159 45.455 0.00 0.00 36.92 5.03
1320 1428 2.031258 TTTGTGTGGTGAAAGCGAGA 57.969 45.000 0.00 0.00 36.92 4.04
1321 1429 2.254546 TTGTGTGGTGAAAGCGAGAT 57.745 45.000 0.00 0.00 36.92 2.75
1331 1439 0.165944 AAAGCGAGATTGTTTCCGCG 59.834 50.000 0.00 0.00 43.99 6.46
1403 1516 1.140312 TGAAGGCCAAGGTGAAGAGT 58.860 50.000 5.01 0.00 0.00 3.24
1573 1691 6.294176 GCAACCCCATACTTTAATGCAGATAG 60.294 42.308 0.00 0.00 33.00 2.08
1668 3394 8.830741 AGGTAGCCTTGATAATTTATAGCATCT 58.169 33.333 0.00 0.00 0.00 2.90
1747 3510 5.192927 TCTTCTTCTGTTTTCTTGGCTGAA 58.807 37.500 0.00 0.00 0.00 3.02
2035 3807 5.539574 TCAATGATTTTTCTCTTCCCTGCAA 59.460 36.000 0.00 0.00 0.00 4.08
2036 3808 4.853924 TGATTTTTCTCTTCCCTGCAAC 57.146 40.909 0.00 0.00 0.00 4.17
2302 4076 2.866085 AAGAGCAGAGGTGATGCCGC 62.866 60.000 0.00 0.00 44.97 6.53
2405 4182 3.068873 GCTTGGATAGACCGAATGACTCT 59.931 47.826 0.00 0.00 42.61 3.24
2468 4245 4.730966 TCTGTTCTTCTAGGATATCGCCT 58.269 43.478 0.00 0.00 42.15 5.52
2480 4257 3.141488 TCGCCTTCGGAGGAGAGC 61.141 66.667 16.16 0.00 45.52 4.09
2526 4303 4.439837 GCCATTCTCAGCCTTTCTCATTTC 60.440 45.833 0.00 0.00 0.00 2.17
2539 4316 4.156455 TCTCATTTCTGGAGGTAATGGC 57.844 45.455 0.00 0.00 33.18 4.40
2548 4325 4.406003 TCTGGAGGTAATGGCTTTCTCTAC 59.594 45.833 0.00 0.00 0.00 2.59
2560 4337 5.123820 TGGCTTTCTCTACGAAAAATGGATG 59.876 40.000 0.00 0.00 40.87 3.51
2564 4341 3.938963 TCTCTACGAAAAATGGATGTGCC 59.061 43.478 0.00 0.00 37.10 5.01
2589 4366 5.736951 TTTTAGCCCATGTTATGCTGTTT 57.263 34.783 6.55 0.00 36.57 2.83
2599 4376 6.748658 CCATGTTATGCTGTTTCACAATGTAG 59.251 38.462 0.00 0.00 0.00 2.74
2601 4378 7.686438 TGTTATGCTGTTTCACAATGTAGAT 57.314 32.000 0.00 0.00 0.00 1.98
2665 4579 3.425162 AAGAAGTGTGACAGGGATTCC 57.575 47.619 0.00 0.00 0.00 3.01
2687 4606 4.400251 CCATGATTGAAATGTAGCTGTGGT 59.600 41.667 0.00 0.00 0.00 4.16
2692 4611 0.883833 AAATGTAGCTGTGGTGCTGC 59.116 50.000 0.00 0.00 43.87 5.25
2703 4622 2.232696 TGTGGTGCTGCGTAAGATTCTA 59.767 45.455 0.00 0.00 43.02 2.10
2716 4635 7.067859 TGCGTAAGATTCTAAGGTCTAAGCTTA 59.932 37.037 5.94 5.94 36.93 3.09
2855 4774 0.549469 AGATGGTGAGATGCATGGCA 59.451 50.000 2.46 0.00 44.86 4.92
2936 4855 0.982673 CGTCATCGTTCTCGTCAACC 59.017 55.000 0.00 0.00 38.33 3.77
2939 4858 1.611977 TCATCGTTCTCGTCAACCAGT 59.388 47.619 0.00 0.00 38.33 4.00
3068 4987 3.391296 AGTTCAGTGGACCATACAACACT 59.609 43.478 0.00 0.00 44.36 3.55
3151 5070 3.957497 CTCCAGACCTACAAGTGAGCTAT 59.043 47.826 0.00 0.00 0.00 2.97
3179 5098 4.517285 TCCTTATTCTCCAGTGAATGTGC 58.483 43.478 5.44 0.00 37.27 4.57
3190 5109 4.552355 CAGTGAATGTGCATGTGAATGTT 58.448 39.130 0.00 0.00 0.00 2.71
3219 5138 6.227522 TCGTCTTTCCATTGTTACTGATTCA 58.772 36.000 0.00 0.00 0.00 2.57
3222 5141 7.307989 CGTCTTTCCATTGTTACTGATTCAGTT 60.308 37.037 23.53 8.93 42.59 3.16
3257 5176 4.877378 TTTCAGGTTGATACTGTACCGT 57.123 40.909 0.00 0.00 37.04 4.83
3326 5245 4.794655 GCGTTTTGGGTCAACATACACAAT 60.795 41.667 0.00 0.00 42.15 2.71
3332 5251 3.255642 GGGTCAACATACACAATGCACTT 59.744 43.478 0.00 0.00 39.39 3.16
3372 5291 0.113190 CTCCCTGGCCCAAGAAGTTT 59.887 55.000 0.00 0.00 0.00 2.66
3414 5335 5.856156 TGTGTCTACTTTTTATTGACGGGA 58.144 37.500 0.00 0.00 0.00 5.14
3419 5343 7.093465 TGTCTACTTTTTATTGACGGGATCTCT 60.093 37.037 0.00 0.00 0.00 3.10
3423 5347 6.715264 ACTTTTTATTGACGGGATCTCTTTGT 59.285 34.615 0.00 0.00 0.00 2.83
3424 5348 6.494893 TTTTATTGACGGGATCTCTTTGTG 57.505 37.500 0.00 0.00 0.00 3.33
3557 5481 6.741992 TGTTCCTGCAATAAGATGTACTTG 57.258 37.500 0.00 0.00 39.38 3.16
3984 5929 1.625870 CACGCGCTAATCACTGTCG 59.374 57.895 5.73 0.00 0.00 4.35
4087 6032 4.931002 TCTTTAAGCATGCAAAGATTTGGC 59.069 37.500 22.57 2.81 36.19 4.52
4118 6063 1.079503 GCACGTGTCCTGAGGAAATC 58.920 55.000 18.38 0.00 31.38 2.17
4122 6067 4.115516 CACGTGTCCTGAGGAAATCATAG 58.884 47.826 0.96 0.00 37.28 2.23
4123 6068 3.126831 CGTGTCCTGAGGAAATCATAGC 58.873 50.000 0.96 0.00 37.28 2.97
4124 6069 3.471680 GTGTCCTGAGGAAATCATAGCC 58.528 50.000 0.96 0.00 37.28 3.93
4126 6071 3.135348 TGTCCTGAGGAAATCATAGCCTG 59.865 47.826 0.96 0.00 37.28 4.85
4127 6072 3.389329 GTCCTGAGGAAATCATAGCCTGA 59.611 47.826 0.96 0.00 37.28 3.86
4277 6234 2.916934 AGCCAATCCCCTTTACACACTA 59.083 45.455 0.00 0.00 0.00 2.74
4278 6235 3.014623 GCCAATCCCCTTTACACACTAC 58.985 50.000 0.00 0.00 0.00 2.73
4279 6236 3.617284 CCAATCCCCTTTACACACTACC 58.383 50.000 0.00 0.00 0.00 3.18
4281 6238 1.660242 TCCCCTTTACACACTACCCC 58.340 55.000 0.00 0.00 0.00 4.95
4463 6425 2.509336 GGCCTCGTCGACATGGTG 60.509 66.667 17.16 0.00 0.00 4.17
4503 6465 4.819761 TGAGGACGGCGATGCAGC 62.820 66.667 16.62 0.00 0.00 5.25
4763 6751 9.598517 AAGAAATTGAGAAGCAAACATGTTTAA 57.401 25.926 22.87 12.40 40.48 1.52
4847 6860 3.750130 TCTTCTCAGCATTGCAAGTTCTC 59.250 43.478 11.91 0.00 0.00 2.87
4858 6871 1.735369 GCAAGTTCTCGCTCTCTGGAG 60.735 57.143 0.00 0.00 42.18 3.86
4899 6914 7.334421 GCAGATAATCAAGGAGTTTGTACAAGA 59.666 37.037 8.56 1.21 38.01 3.02
4900 6915 8.877779 CAGATAATCAAGGAGTTTGTACAAGAG 58.122 37.037 8.56 0.00 38.01 2.85
4901 6916 5.948992 AATCAAGGAGTTTGTACAAGAGC 57.051 39.130 8.56 3.85 38.01 4.09
4902 6917 3.390135 TCAAGGAGTTTGTACAAGAGCG 58.610 45.455 8.56 0.00 38.01 5.03
4903 6918 3.131396 CAAGGAGTTTGTACAAGAGCGT 58.869 45.455 8.56 1.31 31.92 5.07
4906 6921 2.479275 GGAGTTTGTACAAGAGCGTTCC 59.521 50.000 8.56 7.24 0.00 3.62
4907 6922 3.128349 GAGTTTGTACAAGAGCGTTCCA 58.872 45.455 8.56 0.00 0.00 3.53
4908 6923 3.740115 AGTTTGTACAAGAGCGTTCCAT 58.260 40.909 8.56 0.00 0.00 3.41
4909 6924 4.134563 AGTTTGTACAAGAGCGTTCCATT 58.865 39.130 8.56 0.00 0.00 3.16
4922 6947 3.557595 GCGTTCCATTCTTCTAGATGGTG 59.442 47.826 9.43 7.25 35.74 4.17
4924 6949 4.568359 CGTTCCATTCTTCTAGATGGTGTG 59.432 45.833 9.43 5.00 35.74 3.82
4928 6953 3.616956 TTCTTCTAGATGGTGTGGCAG 57.383 47.619 5.84 0.00 0.00 4.85
4985 7010 8.673711 TGGTCTTCAGTTGTTGTTAATATATGC 58.326 33.333 0.00 0.00 0.00 3.14
4986 7011 8.893727 GGTCTTCAGTTGTTGTTAATATATGCT 58.106 33.333 0.00 0.00 0.00 3.79
5017 7042 1.398692 GAAGTTGTGTTTGGCTCCCA 58.601 50.000 0.00 0.00 0.00 4.37
5019 7044 1.109323 AGTTGTGTTTGGCTCCCAGC 61.109 55.000 0.00 0.00 41.46 4.85
5049 7074 6.668323 TGAAGCTCGGTTTTAAAAGATTCAG 58.332 36.000 12.13 2.53 38.73 3.02
5053 7078 7.886338 AGCTCGGTTTTAAAAGATTCAGAAAT 58.114 30.769 0.00 0.00 0.00 2.17
5054 7079 7.809806 AGCTCGGTTTTAAAAGATTCAGAAATG 59.190 33.333 0.00 0.00 0.00 2.32
5055 7080 7.595130 GCTCGGTTTTAAAAGATTCAGAAATGT 59.405 33.333 0.00 0.00 0.00 2.71
5144 7172 8.352201 TGTCTGTAAAGTTTCATGGAGAATTTG 58.648 33.333 0.00 0.00 35.83 2.32
5151 11073 8.791327 AAGTTTCATGGAGAATTTGTTTTTGT 57.209 26.923 0.00 0.00 35.83 2.83
5268 11190 6.038382 GCTCACATCAACATCTCATGAAATCT 59.962 38.462 0.00 0.00 0.00 2.40
5275 11197 6.766467 TCAACATCTCATGAAATCTCATCTGG 59.234 38.462 0.00 0.00 40.49 3.86
5276 11198 5.064558 ACATCTCATGAAATCTCATCTGGC 58.935 41.667 0.00 0.00 40.49 4.85
5331 11253 3.429492 TGGATGGTGCATAGCAAAGAAA 58.571 40.909 0.00 0.00 41.47 2.52
5332 11254 3.831333 TGGATGGTGCATAGCAAAGAAAA 59.169 39.130 0.00 0.00 41.47 2.29
5426 11348 4.179896 TGGGACCCCAACCCTATG 57.820 61.111 8.45 0.00 46.82 2.23
5427 11349 1.481329 TGGGACCCCAACCCTATGA 59.519 57.895 8.45 0.00 46.82 2.15
5428 11350 0.047176 TGGGACCCCAACCCTATGAT 59.953 55.000 8.45 0.00 46.82 2.45
5429 11351 0.771755 GGGACCCCAACCCTATGATC 59.228 60.000 0.00 0.00 43.65 2.92
5430 11352 0.771755 GGACCCCAACCCTATGATCC 59.228 60.000 0.00 0.00 0.00 3.36
5431 11353 1.518367 GACCCCAACCCTATGATCCA 58.482 55.000 0.00 0.00 0.00 3.41
5432 11354 1.850345 GACCCCAACCCTATGATCCAA 59.150 52.381 0.00 0.00 0.00 3.53
5433 11355 2.243736 GACCCCAACCCTATGATCCAAA 59.756 50.000 0.00 0.00 0.00 3.28
5434 11356 2.244769 ACCCCAACCCTATGATCCAAAG 59.755 50.000 0.00 0.00 0.00 2.77
5435 11357 2.424812 CCCCAACCCTATGATCCAAAGG 60.425 54.545 0.00 0.00 0.00 3.11
5440 11362 3.319031 CCCTATGATCCAAAGGGCTTT 57.681 47.619 10.32 0.00 43.47 3.51
5441 11363 3.225940 CCCTATGATCCAAAGGGCTTTC 58.774 50.000 10.32 0.00 43.47 2.62
5442 11364 3.373001 CCCTATGATCCAAAGGGCTTTCA 60.373 47.826 10.32 0.00 43.47 2.69
5443 11365 3.633986 CCTATGATCCAAAGGGCTTTCAC 59.366 47.826 0.00 0.00 0.00 3.18
5444 11366 2.673775 TGATCCAAAGGGCTTTCACA 57.326 45.000 0.00 0.00 0.00 3.58
5445 11367 2.517959 TGATCCAAAGGGCTTTCACAG 58.482 47.619 0.00 0.00 0.00 3.66
5446 11368 2.108075 TGATCCAAAGGGCTTTCACAGA 59.892 45.455 0.00 0.00 0.00 3.41
5447 11369 2.978156 TCCAAAGGGCTTTCACAGAT 57.022 45.000 0.00 0.00 0.00 2.90
5448 11370 3.243359 TCCAAAGGGCTTTCACAGATT 57.757 42.857 0.00 0.00 0.00 2.40
5449 11371 3.575805 TCCAAAGGGCTTTCACAGATTT 58.424 40.909 0.00 0.00 0.00 2.17
5450 11372 3.966665 TCCAAAGGGCTTTCACAGATTTT 59.033 39.130 0.00 0.00 0.00 1.82
5451 11373 4.408596 TCCAAAGGGCTTTCACAGATTTTT 59.591 37.500 0.00 0.00 0.00 1.94
5478 11400 6.515512 CCCCCTAAGATTCAGATCCTAAAA 57.484 41.667 0.00 0.00 32.44 1.52
5479 11401 6.911308 CCCCCTAAGATTCAGATCCTAAAAA 58.089 40.000 0.00 0.00 32.44 1.94
5506 11428 9.933723 ATTCCTAACAAAAATTCTTCAATCCAG 57.066 29.630 0.00 0.00 0.00 3.86
5507 11429 8.704849 TCCTAACAAAAATTCTTCAATCCAGA 57.295 30.769 0.00 0.00 0.00 3.86
5508 11430 8.796475 TCCTAACAAAAATTCTTCAATCCAGAG 58.204 33.333 0.00 0.00 0.00 3.35
5509 11431 8.796475 CCTAACAAAAATTCTTCAATCCAGAGA 58.204 33.333 0.00 0.00 0.00 3.10
5510 11432 9.837525 CTAACAAAAATTCTTCAATCCAGAGAG 57.162 33.333 0.00 0.00 0.00 3.20
5511 11433 7.224522 ACAAAAATTCTTCAATCCAGAGAGG 57.775 36.000 0.00 0.00 39.47 3.69
5512 11434 5.911378 AAAATTCTTCAATCCAGAGAGGC 57.089 39.130 0.00 0.00 37.29 4.70
5513 11435 4.858965 AATTCTTCAATCCAGAGAGGCT 57.141 40.909 0.00 0.00 37.29 4.58
5514 11436 3.902881 TTCTTCAATCCAGAGAGGCTC 57.097 47.619 6.34 6.34 37.29 4.70
5515 11437 1.753649 TCTTCAATCCAGAGAGGCTCG 59.246 52.381 9.22 0.00 35.36 5.03
5516 11438 1.753649 CTTCAATCCAGAGAGGCTCGA 59.246 52.381 9.22 0.08 35.36 4.04
5517 11439 1.852633 TCAATCCAGAGAGGCTCGAA 58.147 50.000 9.22 0.00 35.36 3.71
5518 11440 1.478510 TCAATCCAGAGAGGCTCGAAC 59.521 52.381 9.22 5.14 35.36 3.95
5519 11441 0.457851 AATCCAGAGAGGCTCGAACG 59.542 55.000 9.22 0.00 35.36 3.95
5520 11442 1.388065 ATCCAGAGAGGCTCGAACGG 61.388 60.000 9.22 8.76 35.36 4.44
5521 11443 2.202676 CAGAGAGGCTCGAACGGC 60.203 66.667 9.22 0.00 35.36 5.68
5522 11444 2.361865 AGAGAGGCTCGAACGGCT 60.362 61.111 9.22 0.00 43.13 5.52
5532 11454 2.738147 CGAACGGCTCGTGAATTCT 58.262 52.632 7.05 0.00 42.89 2.40
5533 11455 1.904144 CGAACGGCTCGTGAATTCTA 58.096 50.000 7.05 0.00 42.89 2.10
5534 11456 2.460918 CGAACGGCTCGTGAATTCTAT 58.539 47.619 7.05 0.00 42.89 1.98
5535 11457 2.216488 CGAACGGCTCGTGAATTCTATG 59.784 50.000 7.05 0.00 42.89 2.23
5536 11458 1.571919 ACGGCTCGTGAATTCTATGC 58.428 50.000 7.05 5.97 39.18 3.14
5537 11459 1.134818 ACGGCTCGTGAATTCTATGCA 60.135 47.619 7.05 0.00 39.18 3.96
5538 11460 1.258982 CGGCTCGTGAATTCTATGCAC 59.741 52.381 7.05 0.00 0.00 4.57
5545 11467 4.882671 GTGAATTCTATGCACGTGGATT 57.117 40.909 27.88 10.35 0.00 3.01
5546 11468 4.837567 GTGAATTCTATGCACGTGGATTC 58.162 43.478 27.88 18.91 0.00 2.52
5547 11469 4.572389 GTGAATTCTATGCACGTGGATTCT 59.428 41.667 27.88 7.43 0.00 2.40
5548 11470 4.811024 TGAATTCTATGCACGTGGATTCTC 59.189 41.667 27.88 16.11 0.00 2.87
5549 11471 4.679373 ATTCTATGCACGTGGATTCTCT 57.321 40.909 27.88 6.61 0.00 3.10
5550 11472 3.717400 TCTATGCACGTGGATTCTCTC 57.283 47.619 27.88 3.08 0.00 3.20
5551 11473 3.023832 TCTATGCACGTGGATTCTCTCA 58.976 45.455 27.88 9.27 0.00 3.27
5552 11474 2.015736 ATGCACGTGGATTCTCTCAC 57.984 50.000 17.64 0.00 0.00 3.51
5553 11475 0.969149 TGCACGTGGATTCTCTCACT 59.031 50.000 18.88 0.00 0.00 3.41
5554 11476 1.344438 TGCACGTGGATTCTCTCACTT 59.656 47.619 18.88 0.00 0.00 3.16
5555 11477 2.560981 TGCACGTGGATTCTCTCACTTA 59.439 45.455 18.88 0.00 0.00 2.24
5556 11478 3.006430 TGCACGTGGATTCTCTCACTTAA 59.994 43.478 18.88 0.00 0.00 1.85
5557 11479 3.368236 GCACGTGGATTCTCTCACTTAAC 59.632 47.826 18.88 0.00 0.00 2.01
5558 11480 4.810790 CACGTGGATTCTCTCACTTAACT 58.189 43.478 7.95 0.00 0.00 2.24
5559 11481 5.621555 GCACGTGGATTCTCTCACTTAACTA 60.622 44.000 18.88 0.00 0.00 2.24
5560 11482 5.800941 CACGTGGATTCTCTCACTTAACTAC 59.199 44.000 7.95 0.00 0.00 2.73
5561 11483 5.711036 ACGTGGATTCTCTCACTTAACTACT 59.289 40.000 0.00 0.00 0.00 2.57
5562 11484 6.127952 ACGTGGATTCTCTCACTTAACTACTC 60.128 42.308 0.00 0.00 0.00 2.59
5563 11485 6.259638 GTGGATTCTCTCACTTAACTACTCG 58.740 44.000 0.00 0.00 0.00 4.18
5564 11486 5.163642 TGGATTCTCTCACTTAACTACTCGC 60.164 44.000 0.00 0.00 0.00 5.03
5565 11487 5.163642 GGATTCTCTCACTTAACTACTCGCA 60.164 44.000 0.00 0.00 0.00 5.10
5566 11488 5.899120 TTCTCTCACTTAACTACTCGCAT 57.101 39.130 0.00 0.00 0.00 4.73
5567 11489 5.236655 TCTCTCACTTAACTACTCGCATG 57.763 43.478 0.00 0.00 0.00 4.06
5568 11490 3.770666 TCTCACTTAACTACTCGCATGC 58.229 45.455 7.91 7.91 0.00 4.06
5569 11491 3.192633 TCTCACTTAACTACTCGCATGCA 59.807 43.478 19.57 4.02 0.00 3.96
5570 11492 4.115516 CTCACTTAACTACTCGCATGCAT 58.884 43.478 19.57 4.84 0.00 3.96
5571 11493 3.865164 TCACTTAACTACTCGCATGCATG 59.135 43.478 22.70 22.70 0.00 4.06
5572 11494 3.618594 CACTTAACTACTCGCATGCATGT 59.381 43.478 26.79 17.11 0.00 3.21
5573 11495 3.618594 ACTTAACTACTCGCATGCATGTG 59.381 43.478 30.15 30.15 39.55 3.21
5574 11496 1.372582 AACTACTCGCATGCATGTGG 58.627 50.000 33.55 26.38 38.75 4.17
5575 11497 0.462581 ACTACTCGCATGCATGTGGG 60.463 55.000 33.31 33.31 44.16 4.61
5576 11498 2.352422 ACTCGCATGCATGTGGGT 59.648 55.556 34.63 34.63 46.43 4.51
5577 11499 3.594568 CTCGCATGCATGTGGGTT 58.405 55.556 33.55 0.00 38.75 4.11
5578 11500 1.430632 CTCGCATGCATGTGGGTTC 59.569 57.895 33.55 13.89 38.75 3.62
5579 11501 1.303155 TCGCATGCATGTGGGTTCA 60.303 52.632 33.55 16.03 38.75 3.18
5580 11502 1.138036 CGCATGCATGTGGGTTCAG 59.862 57.895 28.76 1.43 34.78 3.02
5581 11503 1.153706 GCATGCATGTGGGTTCAGC 60.154 57.895 26.79 6.33 0.00 4.26
5582 11504 1.879737 GCATGCATGTGGGTTCAGCA 61.880 55.000 26.79 0.00 39.79 4.41
5583 11505 0.604073 CATGCATGTGGGTTCAGCAA 59.396 50.000 18.91 0.00 38.85 3.91
5584 11506 0.604578 ATGCATGTGGGTTCAGCAAC 59.395 50.000 0.00 0.00 38.85 4.17
5585 11507 0.754587 TGCATGTGGGTTCAGCAACA 60.755 50.000 0.00 0.00 33.70 3.33
5586 11508 0.388659 GCATGTGGGTTCAGCAACAA 59.611 50.000 0.00 0.00 33.70 2.83
5587 11509 1.202510 GCATGTGGGTTCAGCAACAAA 60.203 47.619 0.00 0.00 33.70 2.83
5588 11510 2.548493 GCATGTGGGTTCAGCAACAAAT 60.548 45.455 0.00 0.00 33.70 2.32
5589 11511 3.731089 CATGTGGGTTCAGCAACAAATT 58.269 40.909 0.00 0.00 33.70 1.82
5590 11512 3.451141 TGTGGGTTCAGCAACAAATTC 57.549 42.857 0.00 0.00 33.70 2.17
5591 11513 2.762887 TGTGGGTTCAGCAACAAATTCA 59.237 40.909 0.00 0.00 33.70 2.57
5592 11514 3.387374 TGTGGGTTCAGCAACAAATTCAT 59.613 39.130 0.00 0.00 33.70 2.57
5593 11515 3.742369 GTGGGTTCAGCAACAAATTCATG 59.258 43.478 0.00 0.00 33.70 3.07
5594 11516 3.387374 TGGGTTCAGCAACAAATTCATGT 59.613 39.130 0.00 0.00 33.70 3.21
5595 11517 4.586421 TGGGTTCAGCAACAAATTCATGTA 59.414 37.500 0.00 0.00 33.70 2.29
5596 11518 5.069648 TGGGTTCAGCAACAAATTCATGTAA 59.930 36.000 0.00 0.00 33.70 2.41
5597 11519 5.988561 GGGTTCAGCAACAAATTCATGTAAA 59.011 36.000 0.00 0.00 33.70 2.01
5598 11520 6.650390 GGGTTCAGCAACAAATTCATGTAAAT 59.350 34.615 0.00 0.00 33.70 1.40
5599 11521 7.173047 GGGTTCAGCAACAAATTCATGTAAATT 59.827 33.333 0.00 0.00 33.70 1.82
5600 11522 8.558700 GGTTCAGCAACAAATTCATGTAAATTT 58.441 29.630 0.00 0.00 38.95 1.82
5606 11528 9.605955 GCAACAAATTCATGTAAATTTAAACCC 57.394 29.630 0.00 0.00 36.86 4.11
5607 11529 9.804547 CAACAAATTCATGTAAATTTAAACCCG 57.195 29.630 0.00 0.00 36.86 5.28
5608 11530 8.024146 ACAAATTCATGTAAATTTAAACCCGC 57.976 30.769 0.00 0.00 36.86 6.13
5609 11531 7.657761 ACAAATTCATGTAAATTTAAACCCGCA 59.342 29.630 0.00 0.00 36.86 5.69
5610 11532 8.499162 CAAATTCATGTAAATTTAAACCCGCAA 58.501 29.630 0.00 0.00 36.86 4.85
5611 11533 8.608844 AATTCATGTAAATTTAAACCCGCAAA 57.391 26.923 0.00 0.00 0.00 3.68
5612 11534 8.785329 ATTCATGTAAATTTAAACCCGCAAAT 57.215 26.923 0.00 0.00 0.00 2.32
5613 11535 8.608844 TTCATGTAAATTTAAACCCGCAAATT 57.391 26.923 0.00 0.00 36.22 1.82
5614 11536 8.023050 TCATGTAAATTTAAACCCGCAAATTG 57.977 30.769 0.00 0.00 35.19 2.32
5615 11537 7.657761 TCATGTAAATTTAAACCCGCAAATTGT 59.342 29.630 0.00 0.00 35.19 2.71
5616 11538 7.787725 TGTAAATTTAAACCCGCAAATTGTT 57.212 28.000 0.00 0.00 35.19 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.969443 AATCTGACAAGAAAACGCCG 57.031 45.000 0.00 0.00 35.59 6.46
59 60 4.697352 GCTTCCTGCTAATCTGACAAGAAA 59.303 41.667 0.00 0.00 35.76 2.52
77 78 0.741221 CTAGTCCAGCCAACGCTTCC 60.741 60.000 0.00 0.00 45.55 3.46
244 259 1.272760 ACTACAGTACCAGCCAGCTCT 60.273 52.381 0.00 0.00 0.00 4.09
253 268 7.179694 AGGAGCAACTTTTATACTACAGTACCA 59.820 37.037 0.00 0.00 32.72 3.25
254 269 7.554211 AGGAGCAACTTTTATACTACAGTACC 58.446 38.462 0.00 0.00 32.72 3.34
256 271 9.649167 GAAAGGAGCAACTTTTATACTACAGTA 57.351 33.333 7.03 0.00 40.55 2.74
257 272 7.606839 GGAAAGGAGCAACTTTTATACTACAGT 59.393 37.037 7.03 0.00 40.55 3.55
258 273 7.065923 GGGAAAGGAGCAACTTTTATACTACAG 59.934 40.741 7.03 0.00 40.55 2.74
259 274 6.882678 GGGAAAGGAGCAACTTTTATACTACA 59.117 38.462 7.03 0.00 40.55 2.74
261 276 6.012333 TGGGGAAAGGAGCAACTTTTATACTA 60.012 38.462 7.03 0.00 40.55 1.82
271 289 1.704641 AAACTGGGGAAAGGAGCAAC 58.295 50.000 0.00 0.00 0.00 4.17
272 290 2.038659 CAAAACTGGGGAAAGGAGCAA 58.961 47.619 0.00 0.00 0.00 3.91
273 291 1.703411 CAAAACTGGGGAAAGGAGCA 58.297 50.000 0.00 0.00 0.00 4.26
274 292 0.318441 GCAAAACTGGGGAAAGGAGC 59.682 55.000 0.00 0.00 0.00 4.70
275 293 1.703411 TGCAAAACTGGGGAAAGGAG 58.297 50.000 0.00 0.00 0.00 3.69
276 294 2.038659 CTTGCAAAACTGGGGAAAGGA 58.961 47.619 0.00 0.00 0.00 3.36
352 386 2.288395 CCACATCACCTTTTCACCAAGC 60.288 50.000 0.00 0.00 0.00 4.01
355 391 2.174639 AGTCCACATCACCTTTTCACCA 59.825 45.455 0.00 0.00 0.00 4.17
368 404 0.036577 GCTCAGCTCACAGTCCACAT 60.037 55.000 0.00 0.00 0.00 3.21
376 412 2.527624 ACCCCAGCTCAGCTCACA 60.528 61.111 0.00 0.00 36.40 3.58
390 426 3.181434 TGCCATGGATAAATACCTCACCC 60.181 47.826 18.40 0.00 0.00 4.61
494 537 2.672996 ACCAATGGCTCACACGGC 60.673 61.111 0.00 0.00 0.00 5.68
495 538 2.334946 CCACCAATGGCTCACACGG 61.335 63.158 0.00 0.00 39.82 4.94
496 539 3.266964 CCACCAATGGCTCACACG 58.733 61.111 0.00 0.00 39.82 4.49
577 626 4.991776 TGTTTCTCTCTCTCTCTCTCCAA 58.008 43.478 0.00 0.00 0.00 3.53
581 630 4.848357 CCTCTGTTTCTCTCTCTCTCTCT 58.152 47.826 0.00 0.00 0.00 3.10
582 631 3.378427 GCCTCTGTTTCTCTCTCTCTCTC 59.622 52.174 0.00 0.00 0.00 3.20
583 632 3.356290 GCCTCTGTTTCTCTCTCTCTCT 58.644 50.000 0.00 0.00 0.00 3.10
616 665 2.250841 GAAGAGGCAAGCAAGCGAGC 62.251 60.000 3.70 3.70 34.64 5.03
617 666 1.642952 GGAAGAGGCAAGCAAGCGAG 61.643 60.000 0.00 0.00 34.64 5.03
619 668 1.642952 GAGGAAGAGGCAAGCAAGCG 61.643 60.000 0.00 0.00 34.64 4.68
634 683 3.041946 GCCATTTTAGAGAGGGAGAGGA 58.958 50.000 0.00 0.00 0.00 3.71
647 696 3.821600 TGAACTAAACAGCGGCCATTTTA 59.178 39.130 2.24 0.00 0.00 1.52
656 705 4.271687 GTCAACAACTGAACTAAACAGCG 58.728 43.478 0.00 0.00 38.74 5.18
684 733 1.299541 CTCCTCTCTCTCTCGCTGTC 58.700 60.000 0.00 0.00 0.00 3.51
685 734 0.107214 CCTCCTCTCTCTCTCGCTGT 60.107 60.000 0.00 0.00 0.00 4.40
686 735 0.180171 TCCTCCTCTCTCTCTCGCTG 59.820 60.000 0.00 0.00 0.00 5.18
688 737 0.468226 TCTCCTCCTCTCTCTCTCGC 59.532 60.000 0.00 0.00 0.00 5.03
689 738 2.036475 CTCTCTCCTCCTCTCTCTCTCG 59.964 59.091 0.00 0.00 0.00 4.04
691 740 2.293856 ACCTCTCTCCTCCTCTCTCTCT 60.294 54.545 0.00 0.00 0.00 3.10
694 743 1.133792 CCACCTCTCTCCTCCTCTCTC 60.134 61.905 0.00 0.00 0.00 3.20
695 744 0.926293 CCACCTCTCTCCTCCTCTCT 59.074 60.000 0.00 0.00 0.00 3.10
696 745 0.629058 ACCACCTCTCTCCTCCTCTC 59.371 60.000 0.00 0.00 0.00 3.20
697 746 0.334676 CACCACCTCTCTCCTCCTCT 59.665 60.000 0.00 0.00 0.00 3.69
698 747 0.686112 CCACCACCTCTCTCCTCCTC 60.686 65.000 0.00 0.00 0.00 3.71
699 748 1.390125 CCACCACCTCTCTCCTCCT 59.610 63.158 0.00 0.00 0.00 3.69
700 749 1.079438 ACCACCACCTCTCTCCTCC 59.921 63.158 0.00 0.00 0.00 4.30
701 750 1.261238 CCACCACCACCTCTCTCCTC 61.261 65.000 0.00 0.00 0.00 3.71
702 751 1.229336 CCACCACCACCTCTCTCCT 60.229 63.158 0.00 0.00 0.00 3.69
703 752 1.536662 ACCACCACCACCTCTCTCC 60.537 63.158 0.00 0.00 0.00 3.71
712 761 0.178888 TATCCACCAGACCACCACCA 60.179 55.000 0.00 0.00 0.00 4.17
797 846 3.868200 AAGGAACCAGCCCGGCAAG 62.868 63.158 13.15 4.53 39.03 4.01
806 861 1.199615 GAGGGAGGAGAAGGAACCAG 58.800 60.000 0.00 0.00 0.00 4.00
837 920 4.881850 GGAGGAGAGACAAGAACAAAACAA 59.118 41.667 0.00 0.00 0.00 2.83
901 996 1.617947 AAGCAGGCGGTAGAGGAAGG 61.618 60.000 0.00 0.00 0.00 3.46
907 1004 1.263356 AACTACAAGCAGGCGGTAGA 58.737 50.000 23.41 0.00 38.26 2.59
910 1007 0.951558 CAAAACTACAAGCAGGCGGT 59.048 50.000 0.00 0.00 0.00 5.68
942 1039 3.368571 GGGAGCAGCAGCAACCAC 61.369 66.667 16.20 5.35 45.49 4.16
954 1051 4.643387 AACACAGGGCACGGGAGC 62.643 66.667 0.00 0.00 0.00 4.70
955 1052 2.669569 CAACACAGGGCACGGGAG 60.670 66.667 0.00 0.00 0.00 4.30
956 1053 4.263572 CCAACACAGGGCACGGGA 62.264 66.667 0.00 0.00 0.00 5.14
958 1055 2.518349 AACCAACACAGGGCACGG 60.518 61.111 0.00 0.00 0.00 4.94
959 1056 2.721231 CAACCAACACAGGGCACG 59.279 61.111 0.00 0.00 0.00 5.34
960 1057 2.354074 CTGCAACCAACACAGGGCAC 62.354 60.000 0.00 0.00 0.00 5.01
961 1058 2.043551 TGCAACCAACACAGGGCA 60.044 55.556 0.00 0.00 0.00 5.36
962 1059 1.675720 AACTGCAACCAACACAGGGC 61.676 55.000 0.00 0.00 35.70 5.19
963 1060 0.385390 GAACTGCAACCAACACAGGG 59.615 55.000 0.00 0.00 35.70 4.45
964 1061 1.392589 AGAACTGCAACCAACACAGG 58.607 50.000 0.00 0.00 35.70 4.00
965 1062 2.480073 CCAAGAACTGCAACCAACACAG 60.480 50.000 0.00 0.00 37.45 3.66
966 1063 1.476085 CCAAGAACTGCAACCAACACA 59.524 47.619 0.00 0.00 0.00 3.72
967 1064 1.202405 CCCAAGAACTGCAACCAACAC 60.202 52.381 0.00 0.00 0.00 3.32
968 1065 1.110442 CCCAAGAACTGCAACCAACA 58.890 50.000 0.00 0.00 0.00 3.33
972 1069 0.178990 ACCTCCCAAGAACTGCAACC 60.179 55.000 0.00 0.00 0.00 3.77
1093 1190 1.740025 GGCAAATCTTTCAGCGCTACT 59.260 47.619 10.99 0.00 0.00 2.57
1094 1191 1.740025 AGGCAAATCTTTCAGCGCTAC 59.260 47.619 10.99 0.00 0.00 3.58
1095 1192 2.009774 GAGGCAAATCTTTCAGCGCTA 58.990 47.619 10.99 0.00 0.00 4.26
1096 1193 0.807496 GAGGCAAATCTTTCAGCGCT 59.193 50.000 2.64 2.64 0.00 5.92
1113 1219 5.654497 AGAAAACCAAAGAAGTTTGCAGAG 58.346 37.500 0.00 0.00 41.64 3.35
1151 1259 2.234908 CACAAGGAGGAGAATCTCGGTT 59.765 50.000 3.96 0.00 34.74 4.44
1239 1347 1.271926 ACTTGCTTAGGCGGGACAAAT 60.272 47.619 0.00 0.00 42.25 2.32
1259 1367 4.141620 GCATGAGGAGGAGAAATCTTACCA 60.142 45.833 0.00 0.00 0.00 3.25
1299 1407 2.096819 TCTCGCTTTCACCACACAAAAC 59.903 45.455 0.00 0.00 0.00 2.43
1303 1411 1.872952 CAATCTCGCTTTCACCACACA 59.127 47.619 0.00 0.00 0.00 3.72
1304 1412 1.873591 ACAATCTCGCTTTCACCACAC 59.126 47.619 0.00 0.00 0.00 3.82
1306 1414 3.555518 GAAACAATCTCGCTTTCACCAC 58.444 45.455 0.00 0.00 0.00 4.16
1307 1415 2.552315 GGAAACAATCTCGCTTTCACCA 59.448 45.455 0.00 0.00 0.00 4.17
1308 1416 2.412847 CGGAAACAATCTCGCTTTCACC 60.413 50.000 0.00 0.00 0.00 4.02
1309 1417 2.839474 CGGAAACAATCTCGCTTTCAC 58.161 47.619 0.00 0.00 0.00 3.18
1310 1418 1.196808 GCGGAAACAATCTCGCTTTCA 59.803 47.619 0.00 0.00 41.51 2.69
1311 1419 1.786928 CGCGGAAACAATCTCGCTTTC 60.787 52.381 0.00 0.00 42.12 2.62
1312 1420 0.165944 CGCGGAAACAATCTCGCTTT 59.834 50.000 0.00 0.00 42.12 3.51
1313 1421 1.635663 CCGCGGAAACAATCTCGCTT 61.636 55.000 24.07 0.00 42.12 4.68
1314 1422 2.100631 CCGCGGAAACAATCTCGCT 61.101 57.895 24.07 0.00 42.12 4.93
1315 1423 1.908066 AACCGCGGAAACAATCTCGC 61.908 55.000 35.90 0.00 41.40 5.03
1316 1424 0.515564 AAACCGCGGAAACAATCTCG 59.484 50.000 35.90 0.00 0.00 4.04
1317 1425 1.804748 AGAAACCGCGGAAACAATCTC 59.195 47.619 35.90 14.75 0.00 2.75
1318 1426 1.892209 AGAAACCGCGGAAACAATCT 58.108 45.000 35.90 20.55 0.00 2.40
1319 1427 2.699251 AAGAAACCGCGGAAACAATC 57.301 45.000 35.90 18.68 0.00 2.67
1320 1428 2.359531 TCAAAGAAACCGCGGAAACAAT 59.640 40.909 35.90 10.96 0.00 2.71
1321 1429 1.743958 TCAAAGAAACCGCGGAAACAA 59.256 42.857 35.90 6.10 0.00 2.83
1331 1439 3.981416 GGTCGCTCAAAATCAAAGAAACC 59.019 43.478 0.00 0.00 0.00 3.27
1403 1516 3.869912 GCTGCACCTCCTTACTCAAATCA 60.870 47.826 0.00 0.00 0.00 2.57
1539 1657 6.818281 AAAGTATGGGGTTGCATACTAGTA 57.182 37.500 4.77 4.77 41.99 1.82
1540 1658 5.710409 AAAGTATGGGGTTGCATACTAGT 57.290 39.130 0.00 0.00 41.99 2.57
1541 1659 7.308589 GCATTAAAGTATGGGGTTGCATACTAG 60.309 40.741 0.00 0.00 41.99 2.57
1573 1691 5.277538 CGGATAAGAAGGAAATGCAGCTTAC 60.278 44.000 0.00 0.00 0.00 2.34
2035 3807 5.909621 AATAAACTGATGAGCATTGCAGT 57.090 34.783 11.91 1.96 42.91 4.40
2036 3808 6.039047 AGGTAATAAACTGATGAGCATTGCAG 59.961 38.462 11.91 1.28 34.65 4.41
2177 3951 1.675641 GGGAGACAATGCAGGCGTT 60.676 57.895 0.00 0.00 0.00 4.84
2178 3952 2.045926 GGGAGACAATGCAGGCGT 60.046 61.111 0.00 0.00 0.00 5.68
2179 3953 2.825836 GGGGAGACAATGCAGGCG 60.826 66.667 0.00 0.00 0.00 5.52
2302 4076 4.208686 GGTAGCTGGACCGGAGCG 62.209 72.222 9.46 0.00 41.61 5.03
2444 4221 5.417580 AGGCGATATCCTAGAAGAACAGATC 59.582 44.000 0.00 0.00 33.95 2.75
2468 4245 2.660064 GGCAAGGCTCTCCTCCGAA 61.660 63.158 0.00 0.00 43.40 4.30
2507 4284 4.042062 TCCAGAAATGAGAAAGGCTGAGAA 59.958 41.667 0.00 0.00 0.00 2.87
2526 4303 3.922171 AGAGAAAGCCATTACCTCCAG 57.078 47.619 0.00 0.00 0.00 3.86
2539 4316 6.893975 GGCACATCCATTTTTCGTAGAGAAAG 60.894 42.308 0.00 0.00 43.73 2.62
2548 4325 5.610235 AAAATTGGCACATCCATTTTTCG 57.390 34.783 9.46 0.00 46.97 3.46
2560 4337 3.333029 AACATGGGCTAAAATTGGCAC 57.667 42.857 3.89 0.07 38.70 5.01
2564 4341 5.663456 ACAGCATAACATGGGCTAAAATTG 58.337 37.500 0.00 0.00 35.82 2.32
2651 4565 3.266513 TCAATCATGGAATCCCTGTCACA 59.733 43.478 4.52 0.00 0.00 3.58
2665 4579 5.337554 CACCACAGCTACATTTCAATCATG 58.662 41.667 0.00 0.00 0.00 3.07
2687 4606 3.447586 AGACCTTAGAATCTTACGCAGCA 59.552 43.478 0.00 0.00 0.00 4.41
2692 4611 9.968870 AATAAGCTTAGACCTTAGAATCTTACG 57.031 33.333 12.54 0.00 0.00 3.18
2716 4635 6.761312 TCCTGCTCAACAAAATCATGAAAAT 58.239 32.000 0.00 0.00 0.00 1.82
2798 4717 2.093500 TGGAGTTTCAGGGATGTGATCG 60.093 50.000 0.00 0.00 0.00 3.69
2801 4720 3.117701 TGTTTGGAGTTTCAGGGATGTGA 60.118 43.478 0.00 0.00 0.00 3.58
2855 4774 1.134491 GCGAGTTTGCAGTATACCCCT 60.134 52.381 0.00 0.00 34.15 4.79
2930 4849 2.622942 TGGAGAAATTGCACTGGTTGAC 59.377 45.455 0.00 0.00 0.00 3.18
3068 4987 4.422073 AATCGCTGGAATCTCAACCATA 57.578 40.909 0.00 0.00 35.54 2.74
3098 5017 1.482593 ACATCTCTTAGCCTCCGGTTG 59.517 52.381 0.00 0.00 0.00 3.77
3151 5070 7.345653 ACATTCACTGGAGAATAAGGATGAGTA 59.654 37.037 0.00 0.00 36.13 2.59
3179 5098 4.389664 AGACGAACGAAACATTCACATG 57.610 40.909 0.14 0.00 36.34 3.21
3190 5109 5.050634 CAGTAACAATGGAAAGACGAACGAA 60.051 40.000 0.14 0.00 0.00 3.85
3257 5176 4.079980 TCTCAGATCAACGGTTTCCAAA 57.920 40.909 0.00 0.00 0.00 3.28
3345 5264 2.381941 GGGCCAGGGAGAGAAGCAT 61.382 63.158 4.39 0.00 0.00 3.79
3391 5310 5.856156 TCCCGTCAATAAAAAGTAGACACA 58.144 37.500 0.00 0.00 0.00 3.72
3392 5311 6.817140 AGATCCCGTCAATAAAAAGTAGACAC 59.183 38.462 0.00 0.00 0.00 3.67
3410 5331 2.969628 AGTAGCACAAAGAGATCCCG 57.030 50.000 0.00 0.00 0.00 5.14
3414 5335 4.999950 CCTGTGAAAGTAGCACAAAGAGAT 59.000 41.667 0.00 0.00 44.75 2.75
3419 5343 2.930950 AGCCTGTGAAAGTAGCACAAA 58.069 42.857 0.00 0.00 44.75 2.83
3423 5347 4.222810 TGAGATAAGCCTGTGAAAGTAGCA 59.777 41.667 0.00 0.00 0.00 3.49
3424 5348 4.759782 TGAGATAAGCCTGTGAAAGTAGC 58.240 43.478 0.00 0.00 0.00 3.58
3557 5481 6.488344 AGGGAAAGAAGAAACTTCATCTGAAC 59.512 38.462 12.86 4.96 35.63 3.18
3631 5558 5.748402 TGGATCAGAGCTACATTGATGTTT 58.252 37.500 1.46 0.00 41.97 2.83
3794 5739 4.858692 CCACTGCATTAAAAGGATCAAACG 59.141 41.667 0.00 0.00 0.00 3.60
3931 5876 1.530183 GGGATCAGAATGGCTGCCC 60.530 63.158 17.53 0.00 44.52 5.36
3984 5929 1.539827 ACAAGCGATTAGGGCAACAAC 59.460 47.619 0.00 0.00 39.74 3.32
4027 5972 0.961019 GAGTGTGCATGGCTTGGAAA 59.039 50.000 2.33 0.00 0.00 3.13
4028 5973 0.178995 TGAGTGTGCATGGCTTGGAA 60.179 50.000 2.33 0.00 0.00 3.53
4087 6032 0.317770 ACACGTGCGCCTTTTTCATG 60.318 50.000 17.22 0.00 0.00 3.07
4126 6071 4.346734 AATCATGTCTTGACAATGCGTC 57.653 40.909 7.57 0.00 45.61 5.19
4127 6072 5.585844 TCATAATCATGTCTTGACAATGCGT 59.414 36.000 7.57 0.00 37.11 5.24
4204 6161 5.352569 CGCAGTACTTTGATGAAAGATTCCT 59.647 40.000 11.87 0.00 41.12 3.36
4288 6250 1.374252 GTGTACACCCTCACCTGCG 60.374 63.158 15.42 0.00 0.00 5.18
4524 6492 0.755686 ATGATCTTGCTCGACCTCCC 59.244 55.000 0.00 0.00 0.00 4.30
4525 6493 1.601663 CGATGATCTTGCTCGACCTCC 60.602 57.143 0.00 0.00 34.41 4.30
4526 6494 1.335182 TCGATGATCTTGCTCGACCTC 59.665 52.381 0.00 0.00 36.57 3.85
4527 6495 1.336440 CTCGATGATCTTGCTCGACCT 59.664 52.381 0.00 0.00 36.57 3.85
4899 6914 3.452627 ACCATCTAGAAGAATGGAACGCT 59.547 43.478 15.55 0.00 37.60 5.07
4900 6915 3.557595 CACCATCTAGAAGAATGGAACGC 59.442 47.826 15.55 0.00 37.60 4.84
4901 6916 4.568359 CACACCATCTAGAAGAATGGAACG 59.432 45.833 15.55 7.09 37.60 3.95
4902 6917 4.878397 CCACACCATCTAGAAGAATGGAAC 59.122 45.833 15.55 0.00 37.60 3.62
4903 6918 4.626287 GCCACACCATCTAGAAGAATGGAA 60.626 45.833 15.55 0.00 37.60 3.53
4906 6921 3.875727 CTGCCACACCATCTAGAAGAATG 59.124 47.826 0.00 0.00 0.00 2.67
4907 6922 3.776969 TCTGCCACACCATCTAGAAGAAT 59.223 43.478 0.00 0.00 0.00 2.40
4908 6923 3.055819 GTCTGCCACACCATCTAGAAGAA 60.056 47.826 0.00 0.00 0.00 2.52
4909 6924 2.497675 GTCTGCCACACCATCTAGAAGA 59.502 50.000 0.00 0.00 0.00 2.87
4978 7003 7.042797 ACTTCCGCAAATCAAAAGCATATAT 57.957 32.000 0.00 0.00 0.00 0.86
4982 7007 3.665745 ACTTCCGCAAATCAAAAGCAT 57.334 38.095 0.00 0.00 0.00 3.79
4985 7010 4.111916 ACACAACTTCCGCAAATCAAAAG 58.888 39.130 0.00 0.00 0.00 2.27
4986 7011 4.116747 ACACAACTTCCGCAAATCAAAA 57.883 36.364 0.00 0.00 0.00 2.44
5019 7044 1.826385 AAAACCGAGCTTCATGGAGG 58.174 50.000 2.40 0.00 0.00 4.30
5115 7142 6.591935 TCTCCATGAAACTTTACAGACAAGT 58.408 36.000 0.00 0.00 35.94 3.16
5118 7145 8.352201 CAAATTCTCCATGAAACTTTACAGACA 58.648 33.333 0.00 0.00 38.29 3.41
5119 7146 8.352942 ACAAATTCTCCATGAAACTTTACAGAC 58.647 33.333 0.00 0.00 38.29 3.51
5121 7148 9.533253 AAACAAATTCTCCATGAAACTTTACAG 57.467 29.630 0.00 0.00 38.29 2.74
5122 7149 9.883142 AAAACAAATTCTCCATGAAACTTTACA 57.117 25.926 0.00 0.00 38.29 2.41
5125 7152 9.230122 ACAAAAACAAATTCTCCATGAAACTTT 57.770 25.926 0.00 0.00 38.29 2.66
5126 7153 8.667463 CACAAAAACAAATTCTCCATGAAACTT 58.333 29.630 0.00 0.00 38.29 2.66
5128 7155 8.195617 TCACAAAAACAAATTCTCCATGAAAC 57.804 30.769 0.00 0.00 38.29 2.78
5129 7156 7.011295 GCTCACAAAAACAAATTCTCCATGAAA 59.989 33.333 0.00 0.00 38.29 2.69
5151 11073 7.153315 TGATTTCATTATTTTTGTGCAGCTCA 58.847 30.769 0.00 0.00 0.00 4.26
5232 11154 9.182214 AGATGTTGATGTGAGCTATACAAAAAT 57.818 29.630 7.30 0.31 0.00 1.82
5241 11163 5.603170 TCATGAGATGTTGATGTGAGCTA 57.397 39.130 0.00 0.00 0.00 3.32
5268 11190 4.724399 TCCTGTGTTTTAAAGCCAGATGA 58.276 39.130 16.51 7.94 0.00 2.92
5275 11197 9.736023 CATTATAGGATTCCTGTGTTTTAAAGC 57.264 33.333 15.80 0.00 34.61 3.51
5355 11277 9.915629 TTCACTCTATGTCTCTACTTTTTCTTC 57.084 33.333 0.00 0.00 0.00 2.87
5371 11293 8.420222 AGAAGTCCAATACATCTTCACTCTATG 58.580 37.037 0.00 0.00 38.78 2.23
5403 11325 1.076014 GGTTGGGGTCCCATCGTTT 59.924 57.895 10.98 0.00 46.64 3.60
5406 11328 1.060163 ATAGGGTTGGGGTCCCATCG 61.060 60.000 10.98 0.00 46.64 3.84
5407 11329 0.478507 CATAGGGTTGGGGTCCCATC 59.521 60.000 10.98 8.97 46.64 3.51
5409 11331 0.047176 ATCATAGGGTTGGGGTCCCA 59.953 55.000 10.98 7.91 46.82 4.37
5410 11332 0.771755 GATCATAGGGTTGGGGTCCC 59.228 60.000 0.00 0.00 44.90 4.46
5411 11333 0.771755 GGATCATAGGGTTGGGGTCC 59.228 60.000 0.00 0.00 0.00 4.46
5412 11334 1.518367 TGGATCATAGGGTTGGGGTC 58.482 55.000 0.00 0.00 0.00 4.46
5413 11335 1.994399 TTGGATCATAGGGTTGGGGT 58.006 50.000 0.00 0.00 0.00 4.95
5414 11336 2.424812 CCTTTGGATCATAGGGTTGGGG 60.425 54.545 0.00 0.00 30.68 4.96
5415 11337 2.424812 CCCTTTGGATCATAGGGTTGGG 60.425 54.545 14.75 3.19 44.24 4.12
5416 11338 2.949447 CCCTTTGGATCATAGGGTTGG 58.051 52.381 14.75 0.00 44.24 3.77
5421 11343 3.633986 GTGAAAGCCCTTTGGATCATAGG 59.366 47.826 0.00 0.00 33.40 2.57
5422 11344 4.272489 TGTGAAAGCCCTTTGGATCATAG 58.728 43.478 0.00 0.00 32.11 2.23
5423 11345 4.018506 TCTGTGAAAGCCCTTTGGATCATA 60.019 41.667 0.00 0.00 32.11 2.15
5424 11346 3.094572 CTGTGAAAGCCCTTTGGATCAT 58.905 45.455 0.00 0.00 32.11 2.45
5425 11347 2.108075 TCTGTGAAAGCCCTTTGGATCA 59.892 45.455 0.00 0.00 32.11 2.92
5426 11348 2.795329 TCTGTGAAAGCCCTTTGGATC 58.205 47.619 0.00 0.00 32.11 3.36
5427 11349 2.978156 TCTGTGAAAGCCCTTTGGAT 57.022 45.000 0.00 0.00 32.11 3.41
5428 11350 2.978156 ATCTGTGAAAGCCCTTTGGA 57.022 45.000 0.00 0.00 32.11 3.53
5429 11351 4.341366 AAAATCTGTGAAAGCCCTTTGG 57.659 40.909 0.00 0.00 32.11 3.28
5455 11377 6.515512 TTTTAGGATCTGAATCTTAGGGGG 57.484 41.667 0.00 0.00 32.12 5.40
5480 11402 9.933723 CTGGATTGAAGAATTTTTGTTAGGAAT 57.066 29.630 0.00 0.00 0.00 3.01
5481 11403 9.142014 TCTGGATTGAAGAATTTTTGTTAGGAA 57.858 29.630 0.00 0.00 0.00 3.36
5482 11404 8.704849 TCTGGATTGAAGAATTTTTGTTAGGA 57.295 30.769 0.00 0.00 0.00 2.94
5483 11405 8.796475 TCTCTGGATTGAAGAATTTTTGTTAGG 58.204 33.333 0.00 0.00 0.00 2.69
5484 11406 9.837525 CTCTCTGGATTGAAGAATTTTTGTTAG 57.162 33.333 0.00 0.00 0.00 2.34
5485 11407 8.796475 CCTCTCTGGATTGAAGAATTTTTGTTA 58.204 33.333 0.00 0.00 38.35 2.41
5486 11408 7.664758 CCTCTCTGGATTGAAGAATTTTTGTT 58.335 34.615 0.00 0.00 38.35 2.83
5487 11409 6.294955 GCCTCTCTGGATTGAAGAATTTTTGT 60.295 38.462 0.00 0.00 38.35 2.83
5488 11410 6.071503 AGCCTCTCTGGATTGAAGAATTTTTG 60.072 38.462 0.00 0.00 38.35 2.44
5489 11411 6.015282 AGCCTCTCTGGATTGAAGAATTTTT 58.985 36.000 0.00 0.00 38.35 1.94
5490 11412 5.578073 AGCCTCTCTGGATTGAAGAATTTT 58.422 37.500 0.00 0.00 38.35 1.82
5491 11413 5.190357 AGCCTCTCTGGATTGAAGAATTT 57.810 39.130 0.00 0.00 38.35 1.82
5492 11414 4.682859 CGAGCCTCTCTGGATTGAAGAATT 60.683 45.833 0.00 0.00 37.84 2.17
5493 11415 3.181467 CGAGCCTCTCTGGATTGAAGAAT 60.181 47.826 0.00 0.00 37.84 2.40
5494 11416 2.167281 CGAGCCTCTCTGGATTGAAGAA 59.833 50.000 0.00 0.00 37.84 2.52
5495 11417 1.753649 CGAGCCTCTCTGGATTGAAGA 59.246 52.381 0.00 0.00 37.84 2.87
5496 11418 1.753649 TCGAGCCTCTCTGGATTGAAG 59.246 52.381 0.00 0.00 41.36 3.02
5497 11419 1.852633 TCGAGCCTCTCTGGATTGAA 58.147 50.000 0.00 0.00 41.36 2.69
5498 11420 1.478510 GTTCGAGCCTCTCTGGATTGA 59.521 52.381 0.00 0.00 42.50 2.57
5499 11421 1.800655 CGTTCGAGCCTCTCTGGATTG 60.801 57.143 0.00 0.00 38.35 2.67
5500 11422 0.457851 CGTTCGAGCCTCTCTGGATT 59.542 55.000 0.00 0.00 38.35 3.01
5501 11423 1.388065 CCGTTCGAGCCTCTCTGGAT 61.388 60.000 0.00 0.00 38.35 3.41
5502 11424 2.046864 CCGTTCGAGCCTCTCTGGA 61.047 63.158 0.00 0.00 38.35 3.86
5503 11425 2.492090 CCGTTCGAGCCTCTCTGG 59.508 66.667 0.00 0.00 39.35 3.86
5504 11426 2.202676 GCCGTTCGAGCCTCTCTG 60.203 66.667 0.00 0.00 0.00 3.35
5505 11427 2.361865 AGCCGTTCGAGCCTCTCT 60.362 61.111 0.00 0.00 0.00 3.10
5506 11428 2.103340 GAGCCGTTCGAGCCTCTC 59.897 66.667 0.00 0.00 0.00 3.20
5515 11437 2.033662 GCATAGAATTCACGAGCCGTTC 60.034 50.000 8.44 0.00 38.32 3.95
5516 11438 1.933853 GCATAGAATTCACGAGCCGTT 59.066 47.619 8.44 0.00 38.32 4.44
5517 11439 1.134818 TGCATAGAATTCACGAGCCGT 60.135 47.619 8.44 0.00 42.36 5.68
5518 11440 1.258982 GTGCATAGAATTCACGAGCCG 59.741 52.381 8.44 0.00 0.00 5.52
5524 11446 4.572389 AGAATCCACGTGCATAGAATTCAC 59.428 41.667 10.91 0.00 0.00 3.18
5525 11447 4.769688 AGAATCCACGTGCATAGAATTCA 58.230 39.130 10.91 0.00 0.00 2.57
5526 11448 5.053145 AGAGAATCCACGTGCATAGAATTC 58.947 41.667 10.91 10.97 33.66 2.17
5527 11449 5.028549 AGAGAATCCACGTGCATAGAATT 57.971 39.130 10.91 2.41 33.66 2.17
5528 11450 4.100035 TGAGAGAATCCACGTGCATAGAAT 59.900 41.667 10.91 0.00 33.66 2.40
5529 11451 3.447229 TGAGAGAATCCACGTGCATAGAA 59.553 43.478 10.91 0.00 33.66 2.10
5530 11452 3.023832 TGAGAGAATCCACGTGCATAGA 58.976 45.455 10.91 1.83 33.66 1.98
5531 11453 3.119291 GTGAGAGAATCCACGTGCATAG 58.881 50.000 10.91 0.00 33.66 2.23
5532 11454 2.760650 AGTGAGAGAATCCACGTGCATA 59.239 45.455 10.91 0.00 39.98 3.14
5533 11455 1.552337 AGTGAGAGAATCCACGTGCAT 59.448 47.619 10.91 0.00 39.98 3.96
5534 11456 0.969149 AGTGAGAGAATCCACGTGCA 59.031 50.000 10.91 0.00 39.98 4.57
5535 11457 2.086054 AAGTGAGAGAATCCACGTGC 57.914 50.000 10.91 0.00 39.98 5.34
5536 11458 4.810790 AGTTAAGTGAGAGAATCCACGTG 58.189 43.478 9.08 9.08 39.98 4.49
5537 11459 5.711036 AGTAGTTAAGTGAGAGAATCCACGT 59.289 40.000 0.00 0.00 39.98 4.49
5538 11460 6.197364 AGTAGTTAAGTGAGAGAATCCACG 57.803 41.667 0.00 0.00 39.98 4.94
5539 11461 6.259638 CGAGTAGTTAAGTGAGAGAATCCAC 58.740 44.000 0.00 0.00 36.81 4.02
5540 11462 5.163642 GCGAGTAGTTAAGTGAGAGAATCCA 60.164 44.000 0.00 0.00 33.66 3.41
5541 11463 5.163642 TGCGAGTAGTTAAGTGAGAGAATCC 60.164 44.000 0.00 0.00 33.66 3.01
5542 11464 5.881447 TGCGAGTAGTTAAGTGAGAGAATC 58.119 41.667 0.00 0.00 0.00 2.52
5543 11465 5.899120 TGCGAGTAGTTAAGTGAGAGAAT 57.101 39.130 0.00 0.00 0.00 2.40
5544 11466 5.641709 CATGCGAGTAGTTAAGTGAGAGAA 58.358 41.667 0.00 0.00 0.00 2.87
5545 11467 4.438880 GCATGCGAGTAGTTAAGTGAGAGA 60.439 45.833 0.00 0.00 0.00 3.10
5546 11468 3.794028 GCATGCGAGTAGTTAAGTGAGAG 59.206 47.826 0.00 0.00 0.00 3.20
5547 11469 3.192633 TGCATGCGAGTAGTTAAGTGAGA 59.807 43.478 14.09 0.00 0.00 3.27
5548 11470 3.511699 TGCATGCGAGTAGTTAAGTGAG 58.488 45.455 14.09 0.00 0.00 3.51
5549 11471 3.586100 TGCATGCGAGTAGTTAAGTGA 57.414 42.857 14.09 0.00 0.00 3.41
5550 11472 3.618594 ACATGCATGCGAGTAGTTAAGTG 59.381 43.478 26.53 0.00 0.00 3.16
5551 11473 3.618594 CACATGCATGCGAGTAGTTAAGT 59.381 43.478 26.53 0.00 0.00 2.24
5552 11474 3.001634 CCACATGCATGCGAGTAGTTAAG 59.998 47.826 26.53 0.00 0.00 1.85
5553 11475 2.935849 CCACATGCATGCGAGTAGTTAA 59.064 45.455 26.53 0.00 0.00 2.01
5554 11476 2.549926 CCACATGCATGCGAGTAGTTA 58.450 47.619 26.53 0.00 0.00 2.24
5555 11477 1.372582 CCACATGCATGCGAGTAGTT 58.627 50.000 26.53 1.08 0.00 2.24
5556 11478 0.462581 CCCACATGCATGCGAGTAGT 60.463 55.000 26.53 1.90 0.00 2.73
5557 11479 0.462581 ACCCACATGCATGCGAGTAG 60.463 55.000 26.53 11.68 0.00 2.57
5558 11480 0.035534 AACCCACATGCATGCGAGTA 60.036 50.000 26.53 0.00 0.00 2.59
5559 11481 1.303561 AACCCACATGCATGCGAGT 60.304 52.632 26.53 17.19 0.00 4.18
5560 11482 1.307355 TGAACCCACATGCATGCGAG 61.307 55.000 26.53 16.54 0.00 5.03
5561 11483 1.303155 TGAACCCACATGCATGCGA 60.303 52.632 26.53 2.48 0.00 5.10
5562 11484 1.138036 CTGAACCCACATGCATGCG 59.862 57.895 26.53 17.30 0.00 4.73
5563 11485 1.153706 GCTGAACCCACATGCATGC 60.154 57.895 26.53 11.82 0.00 4.06
5564 11486 0.604073 TTGCTGAACCCACATGCATG 59.396 50.000 25.09 25.09 33.50 4.06
5565 11487 0.604578 GTTGCTGAACCCACATGCAT 59.395 50.000 0.00 0.00 33.50 3.96
5566 11488 0.754587 TGTTGCTGAACCCACATGCA 60.755 50.000 0.00 0.00 0.00 3.96
5567 11489 0.388659 TTGTTGCTGAACCCACATGC 59.611 50.000 0.00 0.00 0.00 4.06
5568 11490 2.886862 TTTGTTGCTGAACCCACATG 57.113 45.000 0.00 0.00 0.00 3.21
5569 11491 3.387374 TGAATTTGTTGCTGAACCCACAT 59.613 39.130 0.00 0.00 0.00 3.21
5570 11492 2.762887 TGAATTTGTTGCTGAACCCACA 59.237 40.909 0.00 0.00 0.00 4.17
5571 11493 3.451141 TGAATTTGTTGCTGAACCCAC 57.549 42.857 0.00 0.00 0.00 4.61
5572 11494 3.387374 ACATGAATTTGTTGCTGAACCCA 59.613 39.130 0.00 0.00 0.00 4.51
5573 11495 3.993920 ACATGAATTTGTTGCTGAACCC 58.006 40.909 0.00 0.00 0.00 4.11
5574 11496 7.656707 ATTTACATGAATTTGTTGCTGAACC 57.343 32.000 0.00 0.00 0.00 3.62
5580 11502 9.605955 GGGTTTAAATTTACATGAATTTGTTGC 57.394 29.630 12.90 3.99 39.05 4.17
5581 11503 9.804547 CGGGTTTAAATTTACATGAATTTGTTG 57.195 29.630 12.90 0.00 39.05 3.33
5582 11504 8.499967 GCGGGTTTAAATTTACATGAATTTGTT 58.500 29.630 12.90 0.00 39.05 2.83
5583 11505 7.657761 TGCGGGTTTAAATTTACATGAATTTGT 59.342 29.630 12.90 0.00 39.05 2.83
5584 11506 8.023050 TGCGGGTTTAAATTTACATGAATTTG 57.977 30.769 12.90 0.60 39.05 2.32
5585 11507 8.608844 TTGCGGGTTTAAATTTACATGAATTT 57.391 26.923 0.00 5.03 40.99 1.82
5586 11508 8.608844 TTTGCGGGTTTAAATTTACATGAATT 57.391 26.923 0.00 0.00 0.00 2.17
5587 11509 8.785329 ATTTGCGGGTTTAAATTTACATGAAT 57.215 26.923 0.00 0.00 0.00 2.57
5588 11510 8.499162 CAATTTGCGGGTTTAAATTTACATGAA 58.501 29.630 0.00 0.00 35.07 2.57
5589 11511 7.657761 ACAATTTGCGGGTTTAAATTTACATGA 59.342 29.630 0.00 0.00 35.07 3.07
5590 11512 7.801752 ACAATTTGCGGGTTTAAATTTACATG 58.198 30.769 0.00 0.00 35.07 3.21
5591 11513 7.971183 ACAATTTGCGGGTTTAAATTTACAT 57.029 28.000 0.00 0.00 35.07 2.29
5592 11514 7.787725 AACAATTTGCGGGTTTAAATTTACA 57.212 28.000 0.00 0.00 35.07 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.