Multiple sequence alignment - TraesCS5D01G414200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G414200 chr5D 100.000 3070 0 0 1 3070 476748715 476751784 0.000000e+00 5670.0
1 TraesCS5D01G414200 chr5D 86.433 1172 91 36 844 1985 476784805 476785938 0.000000e+00 1221.0
2 TraesCS5D01G414200 chr5D 86.863 1020 94 16 775 1756 476708190 476709207 0.000000e+00 1105.0
3 TraesCS5D01G414200 chr5D 88.575 919 73 16 867 1763 476724986 476725894 0.000000e+00 1086.0
4 TraesCS5D01G414200 chr5D 80.702 399 54 13 294 676 476784294 476784685 3.870000e-74 289.0
5 TraesCS5D01G414200 chr5B 90.628 1878 106 21 1 1835 584244659 584246509 0.000000e+00 2429.0
6 TraesCS5D01G414200 chr5B 88.743 1910 128 43 844 2737 584291778 584293616 0.000000e+00 2255.0
7 TraesCS5D01G414200 chr5B 87.825 846 67 12 867 1694 584142353 584143180 0.000000e+00 959.0
8 TraesCS5D01G414200 chr5B 84.390 1025 101 20 775 1756 584126472 584127480 0.000000e+00 952.0
9 TraesCS5D01G414200 chr5B 91.241 411 31 1 2329 2739 584252842 584253247 3.460000e-154 555.0
10 TraesCS5D01G414200 chr5B 91.450 269 14 5 1833 2094 584250130 584250396 8.090000e-96 361.0
11 TraesCS5D01G414200 chr5B 86.111 108 11 1 732 835 584142246 584142353 2.500000e-21 113.0
12 TraesCS5D01G414200 chr5B 76.119 201 38 10 2103 2298 326895016 326895211 2.520000e-16 97.1
13 TraesCS5D01G414200 chr5A 84.301 1911 176 59 862 2739 596054645 596056464 0.000000e+00 1753.0
14 TraesCS5D01G414200 chr5A 87.436 971 73 17 849 1790 596086525 596087475 0.000000e+00 1072.0
15 TraesCS5D01G414200 chr5A 85.288 1040 93 21 775 1756 596032248 596033285 0.000000e+00 1018.0
16 TraesCS5D01G414200 chr5A 84.579 1057 111 25 732 1763 596044115 596045144 0.000000e+00 1002.0
17 TraesCS5D01G414200 chr5A 81.657 169 22 3 151 311 596042953 596043120 6.910000e-27 132.0
18 TraesCS5D01G414200 chr2D 85.075 335 31 8 2740 3068 521582472 521582793 1.060000e-84 324.0
19 TraesCS5D01G414200 chr1A 86.806 288 22 9 2740 3024 548414950 548415224 1.070000e-79 307.0
20 TraesCS5D01G414200 chrUn 91.538 130 7 1 2755 2884 82236940 82236815 3.150000e-40 176.0
21 TraesCS5D01G414200 chr3B 75.676 185 31 11 2156 2334 482987167 482986991 2.540000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G414200 chr5D 476748715 476751784 3069 False 5670 5670 100.000000 1 3070 1 chr5D.!!$F3 3069
1 TraesCS5D01G414200 chr5D 476708190 476709207 1017 False 1105 1105 86.863000 775 1756 1 chr5D.!!$F1 981
2 TraesCS5D01G414200 chr5D 476724986 476725894 908 False 1086 1086 88.575000 867 1763 1 chr5D.!!$F2 896
3 TraesCS5D01G414200 chr5D 476784294 476785938 1644 False 755 1221 83.567500 294 1985 2 chr5D.!!$F4 1691
4 TraesCS5D01G414200 chr5B 584291778 584293616 1838 False 2255 2255 88.743000 844 2737 1 chr5B.!!$F3 1893
5 TraesCS5D01G414200 chr5B 584244659 584253247 8588 False 1115 2429 91.106333 1 2739 3 chr5B.!!$F5 2738
6 TraesCS5D01G414200 chr5B 584126472 584127480 1008 False 952 952 84.390000 775 1756 1 chr5B.!!$F2 981
7 TraesCS5D01G414200 chr5B 584142246 584143180 934 False 536 959 86.968000 732 1694 2 chr5B.!!$F4 962
8 TraesCS5D01G414200 chr5A 596054645 596056464 1819 False 1753 1753 84.301000 862 2739 1 chr5A.!!$F2 1877
9 TraesCS5D01G414200 chr5A 596086525 596087475 950 False 1072 1072 87.436000 849 1790 1 chr5A.!!$F3 941
10 TraesCS5D01G414200 chr5A 596032248 596033285 1037 False 1018 1018 85.288000 775 1756 1 chr5A.!!$F1 981
11 TraesCS5D01G414200 chr5A 596042953 596045144 2191 False 567 1002 83.118000 151 1763 2 chr5A.!!$F4 1612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
787 1459 0.179161 CTAGTTGGTCGGAGCTCACG 60.179 60.0 17.19 16.35 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2551 9277 0.033781 AAACCAAGCGCATGTGCAAT 59.966 45.0 31.29 17.78 42.21 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.308998 CCAAATGCCATAGACCGGTC 58.691 55.000 27.67 27.67 0.00 4.79
58 59 3.021695 CCATAGACCGGTCAGTAGACAA 58.978 50.000 35.00 10.77 46.80 3.18
64 65 3.288964 ACCGGTCAGTAGACAAGGATAG 58.711 50.000 0.00 0.00 46.80 2.08
86 87 9.601971 GATAGATCTTCTTTAGCACTAGTAACG 57.398 37.037 0.00 0.00 0.00 3.18
143 144 3.947834 CTCCGCTTTAATCCATTGAAGGT 59.052 43.478 6.09 0.00 34.90 3.50
144 145 3.945285 TCCGCTTTAATCCATTGAAGGTC 59.055 43.478 6.09 0.00 34.90 3.85
218 227 8.527810 TGGTGACAATTAATCTAAAACCATTCC 58.472 33.333 6.09 0.00 37.44 3.01
315 358 2.821969 ACAAGATGTTTGATGGCACCTC 59.178 45.455 0.00 0.00 0.00 3.85
347 390 7.039434 TGGTGCCAATTCAGTCATATGTTTTTA 60.039 33.333 1.90 0.00 0.00 1.52
397 441 4.837093 TTCCCTAGAACCACATAACCTG 57.163 45.455 0.00 0.00 0.00 4.00
421 467 4.587262 GGTTGGGTTCCACTATGAAAAACT 59.413 41.667 0.00 0.00 30.78 2.66
426 472 8.570068 TGGGTTCCACTATGAAAAACTATAAC 57.430 34.615 0.00 0.00 0.00 1.89
427 473 7.334921 TGGGTTCCACTATGAAAAACTATAACG 59.665 37.037 0.00 0.00 0.00 3.18
508 572 9.465199 TCAAAATATTCTGATCCATCAAGACAA 57.535 29.630 0.00 0.00 36.18 3.18
561 625 5.376854 TGTCACGGTACCTTTAGTAAGTC 57.623 43.478 10.90 0.00 31.05 3.01
612 1273 1.078759 GTCTGGCGACAACGAGATGG 61.079 60.000 0.00 0.00 42.06 3.51
632 1293 4.081406 TGGCTGTTAGATTGTTTGCTGAT 58.919 39.130 0.00 0.00 0.00 2.90
634 1295 5.010922 TGGCTGTTAGATTGTTTGCTGATTT 59.989 36.000 0.00 0.00 0.00 2.17
660 1321 2.635714 TCTCATGACGAATGCATTGCT 58.364 42.857 18.59 0.20 36.11 3.91
679 1340 2.032030 GCTGTGTTTGATTGTACGCACT 60.032 45.455 0.00 0.00 31.98 4.40
685 1346 4.449743 TGTTTGATTGTACGCACTTACTCC 59.550 41.667 0.00 0.00 0.00 3.85
689 1350 2.211250 TGTACGCACTTACTCCCTCT 57.789 50.000 0.00 0.00 0.00 3.69
693 1354 1.692519 ACGCACTTACTCCCTCTGTTT 59.307 47.619 0.00 0.00 0.00 2.83
694 1355 2.069273 CGCACTTACTCCCTCTGTTTG 58.931 52.381 0.00 0.00 0.00 2.93
787 1459 0.179161 CTAGTTGGTCGGAGCTCACG 60.179 60.000 17.19 16.35 0.00 4.35
806 1484 4.100035 TCACGGTGAGCTTGATCAGAATAT 59.900 41.667 6.76 0.00 0.00 1.28
954 1642 3.914551 AACGCTCCCTCTGCCTCCT 62.915 63.158 0.00 0.00 0.00 3.69
1021 1753 1.133363 GCACCACGCATTGCATTACG 61.133 55.000 9.69 0.00 41.79 3.18
1054 1793 1.074752 GAACAAGAGAAGCGCAGGAG 58.925 55.000 11.47 0.00 0.00 3.69
1067 1821 1.650825 GCAGGAGAAGAAGCTAGCAC 58.349 55.000 18.83 10.61 0.00 4.40
1098 1859 4.717629 CACGCGGCGACCAAGAGA 62.718 66.667 30.94 0.00 0.00 3.10
1099 1860 4.719369 ACGCGGCGACCAAGAGAC 62.719 66.667 30.94 0.00 0.00 3.36
1100 1861 4.717629 CGCGGCGACCAAGAGACA 62.718 66.667 19.16 0.00 0.00 3.41
1101 1862 2.125512 GCGGCGACCAAGAGACAT 60.126 61.111 12.98 0.00 0.00 3.06
1102 1863 1.141019 GCGGCGACCAAGAGACATA 59.859 57.895 12.98 0.00 0.00 2.29
1103 1864 1.146358 GCGGCGACCAAGAGACATAC 61.146 60.000 12.98 0.00 0.00 2.39
1648 2463 1.730451 GGAGAGCGAGTAGAGGTGCC 61.730 65.000 0.00 0.00 0.00 5.01
1703 2546 1.594194 TTTTGCACATAGCCCTGCCG 61.594 55.000 0.00 0.00 44.83 5.69
1723 2572 2.851071 GCCTAGCCGCGAGAGATGT 61.851 63.158 8.23 0.00 0.00 3.06
1732 2581 0.247736 GCGAGAGATGTGTGGTTCCT 59.752 55.000 0.00 0.00 0.00 3.36
1783 2640 3.106242 AGACGCGGCAAATGATATGTA 57.894 42.857 17.71 0.00 0.00 2.29
1864 6345 6.926826 TGCTAATTTAGACGTCAGAGAAACAA 59.073 34.615 19.50 3.92 0.00 2.83
1879 6360 3.508793 AGAAACAAGAGGGAATGCACATG 59.491 43.478 0.00 0.00 0.00 3.21
1880 6361 2.885135 ACAAGAGGGAATGCACATGA 57.115 45.000 0.00 0.00 0.00 3.07
1935 6419 6.423905 GCATAAATGATGTGGAGTACGTATGT 59.576 38.462 0.00 0.00 37.90 2.29
1948 6432 6.271488 AGTACGTATGTTTAGTTACTGGCA 57.729 37.500 0.00 0.00 0.00 4.92
1957 6441 5.941647 TGTTTAGTTACTGGCATTAAGTCCC 59.058 40.000 8.07 0.38 0.00 4.46
1964 6448 1.707989 TGGCATTAAGTCCCCTGTTCA 59.292 47.619 0.00 0.00 0.00 3.18
2115 6628 9.646522 AGGACAAAAGTCAAAAGCCATATATAT 57.353 29.630 0.00 0.00 0.00 0.86
2187 6700 5.860941 TCAATTTCTTAGGTGTGCCAAAA 57.139 34.783 0.00 0.00 37.19 2.44
2208 6721 7.418139 CCAAAAATATTCTTCCTCATGCATCCA 60.418 37.037 0.00 0.00 0.00 3.41
2302 7370 3.927142 CCCAAGAACTTGTAGAAGTAGCG 59.073 47.826 5.58 0.00 41.87 4.26
2316 7384 2.123428 TAGCGGCCGGGAAGTACTC 61.123 63.158 29.38 6.37 0.00 2.59
2325 7393 1.325943 CGGGAAGTACTCGACGTAGAC 59.674 57.143 0.00 0.00 46.62 2.59
2344 9068 6.127980 CGTAGACCAGAAGACTCATTAGAACA 60.128 42.308 0.00 0.00 0.00 3.18
2488 9214 3.685836 AACGACAATATTTTAGCGGGC 57.314 42.857 0.00 0.00 0.00 6.13
2530 9256 4.698304 GGATACTCAGACTTATCCTCCTCG 59.302 50.000 4.91 0.00 40.46 4.63
2531 9257 3.935818 ACTCAGACTTATCCTCCTCGA 57.064 47.619 0.00 0.00 0.00 4.04
2532 9258 3.815809 ACTCAGACTTATCCTCCTCGAG 58.184 50.000 5.13 5.13 0.00 4.04
2533 9259 3.201266 ACTCAGACTTATCCTCCTCGAGT 59.799 47.826 12.31 0.00 0.00 4.18
2534 9260 4.409574 ACTCAGACTTATCCTCCTCGAGTA 59.590 45.833 12.31 0.00 29.82 2.59
2551 9277 8.388589 TCCTCGAGTATAAACTATAAGGGATCA 58.611 37.037 12.31 0.00 35.56 2.92
2578 9304 1.808411 TGCGCTTGGTTTCTTAGAGG 58.192 50.000 9.73 0.00 0.00 3.69
2619 9345 4.093743 TGGCTGTGGTAGAAATAGTCTCA 58.906 43.478 0.00 0.00 37.84 3.27
2629 9356 8.602424 TGGTAGAAATAGTCTCATCTTTGGAAA 58.398 33.333 0.00 0.00 37.84 3.13
2666 9394 1.262950 CGAAACACGAGGAAATGCACA 59.737 47.619 0.00 0.00 45.77 4.57
2747 9475 5.835113 ATGTGGAATATGTACACTTTGGC 57.165 39.130 0.00 0.00 36.16 4.52
2748 9476 4.917385 TGTGGAATATGTACACTTTGGCT 58.083 39.130 0.00 0.00 36.16 4.75
2749 9477 6.056090 TGTGGAATATGTACACTTTGGCTA 57.944 37.500 0.00 0.00 36.16 3.93
2750 9478 6.658849 TGTGGAATATGTACACTTTGGCTAT 58.341 36.000 0.00 0.00 36.16 2.97
2751 9479 7.797062 TGTGGAATATGTACACTTTGGCTATA 58.203 34.615 0.00 0.00 36.16 1.31
2752 9480 8.436778 TGTGGAATATGTACACTTTGGCTATAT 58.563 33.333 0.00 0.00 36.16 0.86
2753 9481 9.938280 GTGGAATATGTACACTTTGGCTATATA 57.062 33.333 0.00 0.00 32.58 0.86
2758 9486 9.823647 ATATGTACACTTTGGCTATATATCAGC 57.176 33.333 0.00 1.42 38.35 4.26
2780 9508 5.983118 AGCCGACTGAAGTTTTAATTTTTGG 59.017 36.000 0.00 0.00 0.00 3.28
2781 9509 5.751509 GCCGACTGAAGTTTTAATTTTTGGT 59.248 36.000 0.00 0.00 0.00 3.67
2782 9510 6.074516 GCCGACTGAAGTTTTAATTTTTGGTC 60.075 38.462 0.00 0.00 0.00 4.02
2783 9511 6.975772 CCGACTGAAGTTTTAATTTTTGGTCA 59.024 34.615 0.00 0.00 0.00 4.02
2784 9512 7.167468 CCGACTGAAGTTTTAATTTTTGGTCAG 59.833 37.037 0.00 0.00 36.80 3.51
2785 9513 7.700656 CGACTGAAGTTTTAATTTTTGGTCAGT 59.299 33.333 2.34 2.34 44.27 3.41
2786 9514 8.926715 ACTGAAGTTTTAATTTTTGGTCAGTC 57.073 30.769 0.00 0.00 39.03 3.51
2787 9515 7.700656 ACTGAAGTTTTAATTTTTGGTCAGTCG 59.299 33.333 0.00 0.00 39.03 4.18
2788 9516 7.763356 TGAAGTTTTAATTTTTGGTCAGTCGA 58.237 30.769 0.00 0.00 0.00 4.20
2789 9517 8.410141 TGAAGTTTTAATTTTTGGTCAGTCGAT 58.590 29.630 0.00 0.00 0.00 3.59
2790 9518 9.244799 GAAGTTTTAATTTTTGGTCAGTCGATT 57.755 29.630 0.00 0.00 0.00 3.34
2791 9519 8.797266 AGTTTTAATTTTTGGTCAGTCGATTC 57.203 30.769 0.00 0.00 0.00 2.52
2792 9520 8.630037 AGTTTTAATTTTTGGTCAGTCGATTCT 58.370 29.630 0.00 0.00 0.00 2.40
2793 9521 8.690840 GTTTTAATTTTTGGTCAGTCGATTCTG 58.309 33.333 0.00 0.00 36.85 3.02
2794 9522 7.504924 TTAATTTTTGGTCAGTCGATTCTGT 57.495 32.000 3.27 0.00 36.85 3.41
2795 9523 4.811555 TTTTTGGTCAGTCGATTCTGTG 57.188 40.909 3.27 0.00 36.85 3.66
2796 9524 3.744238 TTTGGTCAGTCGATTCTGTGA 57.256 42.857 3.27 0.00 36.85 3.58
2797 9525 2.724977 TGGTCAGTCGATTCTGTGAC 57.275 50.000 3.27 5.02 38.89 3.67
2799 9527 2.724977 GTCAGTCGATTCTGTGACCA 57.275 50.000 3.27 0.00 35.71 4.02
2800 9528 3.238108 GTCAGTCGATTCTGTGACCAT 57.762 47.619 3.27 0.00 35.71 3.55
2801 9529 4.371855 GTCAGTCGATTCTGTGACCATA 57.628 45.455 3.27 0.00 35.71 2.74
2802 9530 4.106197 GTCAGTCGATTCTGTGACCATAC 58.894 47.826 3.27 0.00 35.71 2.39
2803 9531 3.108881 CAGTCGATTCTGTGACCATACG 58.891 50.000 0.00 0.00 35.71 3.06
2804 9532 2.753452 AGTCGATTCTGTGACCATACGT 59.247 45.455 0.00 0.00 35.71 3.57
2805 9533 3.192844 AGTCGATTCTGTGACCATACGTT 59.807 43.478 0.00 0.00 35.71 3.99
2806 9534 3.303495 GTCGATTCTGTGACCATACGTTG 59.697 47.826 0.00 0.00 0.00 4.10
2807 9535 3.191791 TCGATTCTGTGACCATACGTTGA 59.808 43.478 0.00 0.00 0.00 3.18
2808 9536 4.112634 CGATTCTGTGACCATACGTTGAT 58.887 43.478 0.00 0.00 0.00 2.57
2809 9537 4.566759 CGATTCTGTGACCATACGTTGATT 59.433 41.667 0.00 0.00 0.00 2.57
2810 9538 5.500771 CGATTCTGTGACCATACGTTGATTG 60.501 44.000 0.00 0.00 0.00 2.67
2811 9539 4.529109 TCTGTGACCATACGTTGATTGA 57.471 40.909 0.00 0.00 0.00 2.57
2812 9540 4.888917 TCTGTGACCATACGTTGATTGAA 58.111 39.130 0.00 0.00 0.00 2.69
2813 9541 4.929211 TCTGTGACCATACGTTGATTGAAG 59.071 41.667 0.00 0.00 0.00 3.02
2814 9542 4.637276 TGTGACCATACGTTGATTGAAGT 58.363 39.130 0.00 0.00 0.00 3.01
2815 9543 4.450757 TGTGACCATACGTTGATTGAAGTG 59.549 41.667 0.00 0.00 0.00 3.16
2816 9544 3.435327 TGACCATACGTTGATTGAAGTGC 59.565 43.478 0.00 0.00 0.00 4.40
2817 9545 3.674997 ACCATACGTTGATTGAAGTGCT 58.325 40.909 0.00 0.00 0.00 4.40
2818 9546 4.072131 ACCATACGTTGATTGAAGTGCTT 58.928 39.130 0.00 0.00 0.00 3.91
2819 9547 4.518970 ACCATACGTTGATTGAAGTGCTTT 59.481 37.500 0.00 0.00 0.00 3.51
2820 9548 4.853196 CCATACGTTGATTGAAGTGCTTTG 59.147 41.667 0.00 0.00 0.00 2.77
2821 9549 5.451908 CATACGTTGATTGAAGTGCTTTGT 58.548 37.500 0.00 0.00 0.00 2.83
2822 9550 3.694734 ACGTTGATTGAAGTGCTTTGTG 58.305 40.909 0.00 0.00 0.00 3.33
2823 9551 3.376859 ACGTTGATTGAAGTGCTTTGTGA 59.623 39.130 0.00 0.00 0.00 3.58
2824 9552 4.036734 ACGTTGATTGAAGTGCTTTGTGAT 59.963 37.500 0.00 0.00 0.00 3.06
2825 9553 5.238432 ACGTTGATTGAAGTGCTTTGTGATA 59.762 36.000 0.00 0.00 0.00 2.15
2826 9554 5.565259 CGTTGATTGAAGTGCTTTGTGATAC 59.435 40.000 0.00 0.00 0.00 2.24
2827 9555 5.281693 TGATTGAAGTGCTTTGTGATACG 57.718 39.130 0.00 0.00 0.00 3.06
2828 9556 4.154015 TGATTGAAGTGCTTTGTGATACGG 59.846 41.667 0.00 0.00 0.00 4.02
2829 9557 3.120321 TGAAGTGCTTTGTGATACGGT 57.880 42.857 0.00 0.00 0.00 4.83
2830 9558 2.805671 TGAAGTGCTTTGTGATACGGTG 59.194 45.455 0.00 0.00 0.00 4.94
2831 9559 2.543777 AGTGCTTTGTGATACGGTGT 57.456 45.000 0.00 0.00 0.00 4.16
2832 9560 2.143122 AGTGCTTTGTGATACGGTGTG 58.857 47.619 0.00 0.00 0.00 3.82
2833 9561 2.139917 GTGCTTTGTGATACGGTGTGA 58.860 47.619 0.00 0.00 0.00 3.58
2834 9562 2.157668 GTGCTTTGTGATACGGTGTGAG 59.842 50.000 0.00 0.00 0.00 3.51
2835 9563 2.036604 TGCTTTGTGATACGGTGTGAGA 59.963 45.455 0.00 0.00 0.00 3.27
2836 9564 2.668457 GCTTTGTGATACGGTGTGAGAG 59.332 50.000 0.00 0.00 0.00 3.20
2837 9565 2.363788 TTGTGATACGGTGTGAGAGC 57.636 50.000 0.00 0.00 0.00 4.09
2838 9566 1.545841 TGTGATACGGTGTGAGAGCT 58.454 50.000 0.00 0.00 0.00 4.09
2839 9567 1.472878 TGTGATACGGTGTGAGAGCTC 59.527 52.381 5.27 5.27 0.00 4.09
2840 9568 1.472878 GTGATACGGTGTGAGAGCTCA 59.527 52.381 17.77 0.00 37.24 4.26
2853 9581 3.555428 GCTCACAGCGGAGTTGAC 58.445 61.111 0.00 0.00 42.98 3.18
2854 9582 1.005630 GCTCACAGCGGAGTTGACT 60.006 57.895 0.00 0.00 42.98 3.41
2855 9583 1.287730 GCTCACAGCGGAGTTGACTG 61.288 60.000 0.00 0.00 42.98 3.51
2856 9584 0.315251 CTCACAGCGGAGTTGACTGA 59.685 55.000 0.00 0.00 42.98 3.41
2857 9585 0.032130 TCACAGCGGAGTTGACTGAC 59.968 55.000 0.00 0.00 42.98 3.51
2858 9586 0.946221 CACAGCGGAGTTGACTGACC 60.946 60.000 0.00 0.00 42.98 4.02
2859 9587 1.374758 CAGCGGAGTTGACTGACCC 60.375 63.158 0.00 0.00 42.98 4.46
2860 9588 1.534235 AGCGGAGTTGACTGACCCT 60.534 57.895 0.00 0.00 0.00 4.34
2861 9589 0.251653 AGCGGAGTTGACTGACCCTA 60.252 55.000 0.00 0.00 0.00 3.53
2862 9590 0.824759 GCGGAGTTGACTGACCCTAT 59.175 55.000 0.00 0.00 0.00 2.57
2863 9591 2.029623 GCGGAGTTGACTGACCCTATA 58.970 52.381 0.00 0.00 0.00 1.31
2864 9592 2.223758 GCGGAGTTGACTGACCCTATAC 60.224 54.545 0.00 0.00 0.00 1.47
2865 9593 2.361438 CGGAGTTGACTGACCCTATACC 59.639 54.545 0.00 0.00 0.00 2.73
2866 9594 3.644335 GGAGTTGACTGACCCTATACCT 58.356 50.000 0.00 0.00 0.00 3.08
2867 9595 4.031611 GGAGTTGACTGACCCTATACCTT 58.968 47.826 0.00 0.00 0.00 3.50
2868 9596 4.099727 GGAGTTGACTGACCCTATACCTTC 59.900 50.000 0.00 0.00 0.00 3.46
2869 9597 4.949121 AGTTGACTGACCCTATACCTTCT 58.051 43.478 0.00 0.00 0.00 2.85
2870 9598 5.342866 AGTTGACTGACCCTATACCTTCTT 58.657 41.667 0.00 0.00 0.00 2.52
2871 9599 5.785940 AGTTGACTGACCCTATACCTTCTTT 59.214 40.000 0.00 0.00 0.00 2.52
2872 9600 6.958192 AGTTGACTGACCCTATACCTTCTTTA 59.042 38.462 0.00 0.00 0.00 1.85
2873 9601 7.124448 AGTTGACTGACCCTATACCTTCTTTAG 59.876 40.741 0.00 0.00 0.00 1.85
2874 9602 6.500336 TGACTGACCCTATACCTTCTTTAGT 58.500 40.000 0.00 0.00 0.00 2.24
2875 9603 6.606395 TGACTGACCCTATACCTTCTTTAGTC 59.394 42.308 0.00 0.00 0.00 2.59
2876 9604 5.593502 ACTGACCCTATACCTTCTTTAGTCG 59.406 44.000 0.00 0.00 0.00 4.18
2877 9605 5.759059 TGACCCTATACCTTCTTTAGTCGA 58.241 41.667 0.00 0.00 0.00 4.20
2878 9606 6.371278 TGACCCTATACCTTCTTTAGTCGAT 58.629 40.000 0.00 0.00 0.00 3.59
2879 9607 6.837568 TGACCCTATACCTTCTTTAGTCGATT 59.162 38.462 0.00 0.00 0.00 3.34
2880 9608 7.343833 TGACCCTATACCTTCTTTAGTCGATTT 59.656 37.037 0.00 0.00 0.00 2.17
2881 9609 7.724287 ACCCTATACCTTCTTTAGTCGATTTC 58.276 38.462 0.00 0.00 0.00 2.17
2882 9610 7.153315 CCCTATACCTTCTTTAGTCGATTTCC 58.847 42.308 0.00 0.00 0.00 3.13
2883 9611 7.153315 CCTATACCTTCTTTAGTCGATTTCCC 58.847 42.308 0.00 0.00 0.00 3.97
2884 9612 3.858247 ACCTTCTTTAGTCGATTTCCCG 58.142 45.455 0.00 0.00 0.00 5.14
2885 9613 3.260128 ACCTTCTTTAGTCGATTTCCCGT 59.740 43.478 0.00 0.00 0.00 5.28
2886 9614 4.251268 CCTTCTTTAGTCGATTTCCCGTT 58.749 43.478 0.00 0.00 0.00 4.44
2887 9615 4.694037 CCTTCTTTAGTCGATTTCCCGTTT 59.306 41.667 0.00 0.00 0.00 3.60
2888 9616 5.163884 CCTTCTTTAGTCGATTTCCCGTTTC 60.164 44.000 0.00 0.00 0.00 2.78
2889 9617 4.885413 TCTTTAGTCGATTTCCCGTTTCA 58.115 39.130 0.00 0.00 0.00 2.69
2890 9618 5.484715 TCTTTAGTCGATTTCCCGTTTCAT 58.515 37.500 0.00 0.00 0.00 2.57
2891 9619 5.935789 TCTTTAGTCGATTTCCCGTTTCATT 59.064 36.000 0.00 0.00 0.00 2.57
2892 9620 5.539582 TTAGTCGATTTCCCGTTTCATTG 57.460 39.130 0.00 0.00 0.00 2.82
2893 9621 2.161609 AGTCGATTTCCCGTTTCATTGC 59.838 45.455 0.00 0.00 0.00 3.56
2894 9622 2.161609 GTCGATTTCCCGTTTCATTGCT 59.838 45.455 0.00 0.00 0.00 3.91
2895 9623 2.418628 TCGATTTCCCGTTTCATTGCTC 59.581 45.455 0.00 0.00 0.00 4.26
2896 9624 2.161410 CGATTTCCCGTTTCATTGCTCA 59.839 45.455 0.00 0.00 0.00 4.26
2897 9625 3.728864 CGATTTCCCGTTTCATTGCTCAG 60.729 47.826 0.00 0.00 0.00 3.35
2898 9626 2.270352 TTCCCGTTTCATTGCTCAGT 57.730 45.000 0.00 0.00 0.00 3.41
2899 9627 1.522668 TCCCGTTTCATTGCTCAGTG 58.477 50.000 0.00 0.00 0.00 3.66
2900 9628 0.109597 CCCGTTTCATTGCTCAGTGC 60.110 55.000 0.00 0.00 43.25 4.40
2909 9637 3.181967 GCTCAGTGCACGCCGTAG 61.182 66.667 12.01 6.87 42.31 3.51
2910 9638 3.181967 CTCAGTGCACGCCGTAGC 61.182 66.667 12.01 0.00 0.00 3.58
2911 9639 4.735132 TCAGTGCACGCCGTAGCC 62.735 66.667 12.01 2.11 34.57 3.93
2912 9640 4.742201 CAGTGCACGCCGTAGCCT 62.742 66.667 12.01 3.95 34.57 4.58
2913 9641 4.003788 AGTGCACGCCGTAGCCTT 62.004 61.111 12.01 0.00 34.57 4.35
2914 9642 3.488090 GTGCACGCCGTAGCCTTC 61.488 66.667 0.00 0.00 34.57 3.46
2915 9643 3.997397 TGCACGCCGTAGCCTTCA 61.997 61.111 8.71 0.00 34.57 3.02
2916 9644 2.511600 GCACGCCGTAGCCTTCAT 60.512 61.111 0.00 0.00 34.57 2.57
2917 9645 1.227147 GCACGCCGTAGCCTTCATA 60.227 57.895 0.00 0.00 34.57 2.15
2918 9646 0.600255 GCACGCCGTAGCCTTCATAT 60.600 55.000 0.00 0.00 34.57 1.78
2919 9647 1.139989 CACGCCGTAGCCTTCATATG 58.860 55.000 0.00 0.00 34.57 1.78
2920 9648 0.600255 ACGCCGTAGCCTTCATATGC 60.600 55.000 0.00 0.00 34.57 3.14
2921 9649 0.599991 CGCCGTAGCCTTCATATGCA 60.600 55.000 0.00 0.00 34.57 3.96
2922 9650 1.813513 GCCGTAGCCTTCATATGCAT 58.186 50.000 3.79 3.79 0.00 3.96
2923 9651 1.734465 GCCGTAGCCTTCATATGCATC 59.266 52.381 0.19 0.00 0.00 3.91
2924 9652 2.871637 GCCGTAGCCTTCATATGCATCA 60.872 50.000 0.19 0.00 0.00 3.07
2925 9653 3.402110 CCGTAGCCTTCATATGCATCAA 58.598 45.455 0.19 0.00 0.00 2.57
2926 9654 4.005650 CCGTAGCCTTCATATGCATCAAT 58.994 43.478 0.19 0.00 0.00 2.57
2927 9655 4.142752 CCGTAGCCTTCATATGCATCAATG 60.143 45.833 0.19 2.23 0.00 2.82
2946 9674 1.652563 CATGCATGCATGTCTCCGG 59.347 57.895 40.30 21.55 46.20 5.14
2947 9675 1.527611 ATGCATGCATGTCTCCGGG 60.528 57.895 31.74 0.03 35.03 5.73
2948 9676 2.903855 GCATGCATGTCTCCGGGG 60.904 66.667 26.79 0.00 0.00 5.73
2949 9677 2.591753 CATGCATGTCTCCGGGGT 59.408 61.111 18.91 0.00 0.00 4.95
2950 9678 1.077501 CATGCATGTCTCCGGGGTT 60.078 57.895 18.91 0.00 0.00 4.11
2951 9679 1.077501 ATGCATGTCTCCGGGGTTG 60.078 57.895 0.00 0.00 0.00 3.77
2952 9680 1.561769 ATGCATGTCTCCGGGGTTGA 61.562 55.000 0.00 0.00 0.00 3.18
2953 9681 1.745489 GCATGTCTCCGGGGTTGAC 60.745 63.158 0.00 6.06 0.00 3.18
2954 9682 1.447838 CATGTCTCCGGGGTTGACG 60.448 63.158 0.00 0.00 33.81 4.35
2955 9683 1.608336 ATGTCTCCGGGGTTGACGA 60.608 57.895 0.00 0.00 33.81 4.20
2956 9684 1.885163 ATGTCTCCGGGGTTGACGAC 61.885 60.000 0.00 0.00 33.81 4.34
2957 9685 2.116772 TCTCCGGGGTTGACGACT 59.883 61.111 0.00 0.00 0.00 4.18
2958 9686 1.975407 TCTCCGGGGTTGACGACTC 60.975 63.158 0.00 0.00 0.00 3.36
2959 9687 1.977544 CTCCGGGGTTGACGACTCT 60.978 63.158 0.00 0.00 0.00 3.24
2960 9688 1.532316 TCCGGGGTTGACGACTCTT 60.532 57.895 0.00 0.00 0.00 2.85
2961 9689 1.374252 CCGGGGTTGACGACTCTTG 60.374 63.158 0.00 0.00 0.00 3.02
2962 9690 2.027625 CGGGGTTGACGACTCTTGC 61.028 63.158 0.00 0.00 0.00 4.01
2963 9691 1.070786 GGGGTTGACGACTCTTGCA 59.929 57.895 0.00 0.00 0.00 4.08
2964 9692 0.951040 GGGGTTGACGACTCTTGCAG 60.951 60.000 0.00 0.00 0.00 4.41
2965 9693 1.569479 GGGTTGACGACTCTTGCAGC 61.569 60.000 0.00 0.00 0.00 5.25
2966 9694 1.488957 GTTGACGACTCTTGCAGCG 59.511 57.895 0.00 0.00 0.00 5.18
2967 9695 2.310233 TTGACGACTCTTGCAGCGC 61.310 57.895 0.00 0.00 0.00 5.92
2968 9696 2.734723 GACGACTCTTGCAGCGCA 60.735 61.111 11.47 0.00 36.47 6.09
2969 9697 3.004734 GACGACTCTTGCAGCGCAC 62.005 63.158 11.47 0.68 38.71 5.34
2970 9698 3.037833 CGACTCTTGCAGCGCACA 61.038 61.111 11.47 4.16 38.71 4.57
2971 9699 2.385875 CGACTCTTGCAGCGCACAT 61.386 57.895 11.47 0.00 38.71 3.21
2972 9700 1.134075 GACTCTTGCAGCGCACATG 59.866 57.895 11.47 10.06 38.71 3.21
2973 9701 2.202440 CTCTTGCAGCGCACATGC 60.202 61.111 11.47 12.23 44.11 4.06
2978 9706 3.817655 GCAGCGCACATGCATGGA 61.818 61.111 29.41 0.00 43.31 3.41
2979 9707 3.116463 CAGCGCACATGCATGGAT 58.884 55.556 29.41 8.98 42.21 3.41
2980 9708 1.008881 CAGCGCACATGCATGGATC 60.009 57.895 29.41 16.42 42.21 3.36
2981 9709 2.051614 GCGCACATGCATGGATCG 60.052 61.111 29.41 26.10 42.21 3.69
2982 9710 2.536673 GCGCACATGCATGGATCGA 61.537 57.895 29.41 0.00 42.21 3.59
2983 9711 2.016171 CGCACATGCATGGATCGAA 58.984 52.632 29.41 0.00 42.21 3.71
2984 9712 0.589708 CGCACATGCATGGATCGAAT 59.410 50.000 29.41 4.72 42.21 3.34
2985 9713 1.662026 CGCACATGCATGGATCGAATG 60.662 52.381 29.41 17.50 42.21 2.67
2992 9720 3.425122 ATGGATCGAATGCATGCCA 57.575 47.368 16.68 3.09 40.00 4.92
2993 9721 1.919240 ATGGATCGAATGCATGCCAT 58.081 45.000 16.68 5.59 40.00 4.40
2994 9722 1.694844 TGGATCGAATGCATGCCATT 58.305 45.000 16.68 14.49 46.57 3.16
2995 9723 2.033372 TGGATCGAATGCATGCCATTT 58.967 42.857 16.68 6.27 44.02 2.32
2996 9724 2.431419 TGGATCGAATGCATGCCATTTT 59.569 40.909 16.68 3.52 44.02 1.82
2997 9725 3.118702 TGGATCGAATGCATGCCATTTTT 60.119 39.130 16.68 0.83 44.02 1.94
2998 9726 4.099113 TGGATCGAATGCATGCCATTTTTA 59.901 37.500 16.68 0.00 44.02 1.52
2999 9727 4.682860 GGATCGAATGCATGCCATTTTTAG 59.317 41.667 16.68 8.21 44.02 1.85
3000 9728 4.979943 TCGAATGCATGCCATTTTTAGA 57.020 36.364 16.68 10.01 44.02 2.10
3001 9729 4.923893 TCGAATGCATGCCATTTTTAGAG 58.076 39.130 16.68 4.78 44.02 2.43
3002 9730 4.398988 TCGAATGCATGCCATTTTTAGAGT 59.601 37.500 16.68 0.00 44.02 3.24
3003 9731 4.501559 CGAATGCATGCCATTTTTAGAGTG 59.498 41.667 16.68 0.00 44.02 3.51
3004 9732 5.410355 AATGCATGCCATTTTTAGAGTGT 57.590 34.783 16.68 0.00 41.29 3.55
3005 9733 4.177165 TGCATGCCATTTTTAGAGTGTG 57.823 40.909 16.68 0.00 0.00 3.82
3006 9734 3.573538 TGCATGCCATTTTTAGAGTGTGT 59.426 39.130 16.68 0.00 0.00 3.72
3007 9735 3.922240 GCATGCCATTTTTAGAGTGTGTG 59.078 43.478 6.36 0.00 0.00 3.82
3008 9736 4.559300 GCATGCCATTTTTAGAGTGTGTGT 60.559 41.667 6.36 0.00 0.00 3.72
3009 9737 4.566545 TGCCATTTTTAGAGTGTGTGTG 57.433 40.909 0.00 0.00 0.00 3.82
3010 9738 3.317711 TGCCATTTTTAGAGTGTGTGTGG 59.682 43.478 0.00 0.00 0.00 4.17
3011 9739 3.317993 GCCATTTTTAGAGTGTGTGTGGT 59.682 43.478 0.00 0.00 0.00 4.16
3012 9740 4.792704 GCCATTTTTAGAGTGTGTGTGGTG 60.793 45.833 0.00 0.00 0.00 4.17
3013 9741 4.338118 CCATTTTTAGAGTGTGTGTGGTGT 59.662 41.667 0.00 0.00 0.00 4.16
3014 9742 4.955925 TTTTTAGAGTGTGTGTGGTGTG 57.044 40.909 0.00 0.00 0.00 3.82
3015 9743 3.620427 TTTAGAGTGTGTGTGGTGTGT 57.380 42.857 0.00 0.00 0.00 3.72
3016 9744 2.595124 TAGAGTGTGTGTGGTGTGTG 57.405 50.000 0.00 0.00 0.00 3.82
3017 9745 0.613260 AGAGTGTGTGTGGTGTGTGT 59.387 50.000 0.00 0.00 0.00 3.72
3018 9746 1.006832 GAGTGTGTGTGGTGTGTGTC 58.993 55.000 0.00 0.00 0.00 3.67
3019 9747 0.392461 AGTGTGTGTGGTGTGTGTCC 60.392 55.000 0.00 0.00 0.00 4.02
3020 9748 1.448717 TGTGTGTGGTGTGTGTCCG 60.449 57.895 0.00 0.00 0.00 4.79
3021 9749 1.448893 GTGTGTGGTGTGTGTCCGT 60.449 57.895 0.00 0.00 0.00 4.69
3022 9750 1.448717 TGTGTGGTGTGTGTCCGTG 60.449 57.895 0.00 0.00 0.00 4.94
3023 9751 2.512745 TGTGGTGTGTGTCCGTGC 60.513 61.111 0.00 0.00 0.00 5.34
3024 9752 2.203015 GTGGTGTGTGTCCGTGCT 60.203 61.111 0.00 0.00 0.00 4.40
3025 9753 1.817941 GTGGTGTGTGTCCGTGCTT 60.818 57.895 0.00 0.00 0.00 3.91
3026 9754 1.078072 TGGTGTGTGTCCGTGCTTT 60.078 52.632 0.00 0.00 0.00 3.51
3027 9755 0.678366 TGGTGTGTGTCCGTGCTTTT 60.678 50.000 0.00 0.00 0.00 2.27
3028 9756 0.028902 GGTGTGTGTCCGTGCTTTTC 59.971 55.000 0.00 0.00 0.00 2.29
3029 9757 1.014352 GTGTGTGTCCGTGCTTTTCT 58.986 50.000 0.00 0.00 0.00 2.52
3030 9758 1.003866 GTGTGTGTCCGTGCTTTTCTC 60.004 52.381 0.00 0.00 0.00 2.87
3031 9759 0.586802 GTGTGTCCGTGCTTTTCTCC 59.413 55.000 0.00 0.00 0.00 3.71
3032 9760 0.468226 TGTGTCCGTGCTTTTCTCCT 59.532 50.000 0.00 0.00 0.00 3.69
3033 9761 1.134220 TGTGTCCGTGCTTTTCTCCTT 60.134 47.619 0.00 0.00 0.00 3.36
3034 9762 1.264288 GTGTCCGTGCTTTTCTCCTTG 59.736 52.381 0.00 0.00 0.00 3.61
3035 9763 1.134220 TGTCCGTGCTTTTCTCCTTGT 60.134 47.619 0.00 0.00 0.00 3.16
3036 9764 1.947456 GTCCGTGCTTTTCTCCTTGTT 59.053 47.619 0.00 0.00 0.00 2.83
3037 9765 2.357952 GTCCGTGCTTTTCTCCTTGTTT 59.642 45.455 0.00 0.00 0.00 2.83
3038 9766 3.020984 TCCGTGCTTTTCTCCTTGTTTT 58.979 40.909 0.00 0.00 0.00 2.43
3039 9767 3.445805 TCCGTGCTTTTCTCCTTGTTTTT 59.554 39.130 0.00 0.00 0.00 1.94
3060 9788 7.846644 TTTTTCTTCTGTTTTGATGCACATT 57.153 28.000 0.00 0.00 0.00 2.71
3061 9789 7.846644 TTTTCTTCTGTTTTGATGCACATTT 57.153 28.000 0.00 0.00 0.00 2.32
3062 9790 7.846644 TTTCTTCTGTTTTGATGCACATTTT 57.153 28.000 0.00 0.00 0.00 1.82
3063 9791 7.846644 TTCTTCTGTTTTGATGCACATTTTT 57.153 28.000 0.00 0.00 0.00 1.94
3064 9792 7.236674 TCTTCTGTTTTGATGCACATTTTTG 57.763 32.000 0.00 0.00 0.00 2.44
3065 9793 5.406767 TCTGTTTTGATGCACATTTTTGC 57.593 34.783 0.00 0.00 43.31 3.68
3066 9794 5.117584 TCTGTTTTGATGCACATTTTTGCT 58.882 33.333 0.00 0.00 43.41 3.91
3067 9795 5.585445 TCTGTTTTGATGCACATTTTTGCTT 59.415 32.000 0.00 0.00 43.41 3.91
3068 9796 5.808403 TGTTTTGATGCACATTTTTGCTTC 58.192 33.333 0.00 4.50 43.41 3.86
3069 9797 5.585445 TGTTTTGATGCACATTTTTGCTTCT 59.415 32.000 11.02 0.00 43.64 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.853299 TGGCATGGTACTAGATTAAGTGTAAA 58.147 34.615 0.00 0.00 0.00 2.01
58 59 9.869667 TTACTAGTGCTAAAGAAGATCTATCCT 57.130 33.333 5.39 0.00 0.00 3.24
64 65 6.034591 TGCGTTACTAGTGCTAAAGAAGATC 58.965 40.000 5.39 0.00 0.00 2.75
86 87 5.163923 GCTTAAAACATTCTCTTGCCATTGC 60.164 40.000 0.00 0.00 38.26 3.56
143 144 7.713073 GTGAAAATCCAAAAGTAAAACCCATGA 59.287 33.333 0.00 0.00 0.00 3.07
144 145 7.497249 TGTGAAAATCCAAAAGTAAAACCCATG 59.503 33.333 0.00 0.00 0.00 3.66
275 284 9.292846 CATCTTGTTCACAATGTACAATTATGG 57.707 33.333 0.00 0.00 37.11 2.74
315 358 1.541147 ACTGAATTGGCACCATTGTCG 59.459 47.619 0.00 0.00 0.00 4.35
372 416 6.151144 CAGGTTATGTGGTTCTAGGGAAAAAG 59.849 42.308 0.00 0.00 32.81 2.27
397 441 2.891191 TTCATAGTGGAACCCAACCC 57.109 50.000 0.00 0.00 37.80 4.11
426 472 8.328864 GCTGAATAGTAACTTCTATTGTTTCCG 58.671 37.037 4.09 0.00 39.69 4.30
427 473 8.613482 GGCTGAATAGTAACTTCTATTGTTTCC 58.387 37.037 4.09 0.00 39.69 3.13
545 609 9.755804 AAATTATAGCGACTTACTAAAGGTACC 57.244 33.333 2.73 2.73 37.01 3.34
561 625 6.249682 CCAACGGTTGTTAACAAATTATAGCG 59.750 38.462 22.14 20.82 37.63 4.26
572 1232 1.609555 TGGCATCCAACGGTTGTTAAC 59.390 47.619 18.73 0.00 36.28 2.01
575 1235 0.467290 ACTGGCATCCAACGGTTGTT 60.467 50.000 18.73 4.15 39.43 2.83
601 1262 3.895232 ATCTAACAGCCATCTCGTTGT 57.105 42.857 0.00 0.00 0.00 3.32
612 1273 7.412137 AAAAATCAGCAAACAATCTAACAGC 57.588 32.000 0.00 0.00 0.00 4.40
648 1309 2.663808 TCAAACACAGCAATGCATTCG 58.336 42.857 9.53 6.73 0.00 3.34
660 1321 4.812091 AGTAAGTGCGTACAATCAAACACA 59.188 37.500 6.38 0.00 0.00 3.72
679 1340 6.697641 AGTATTTCCAAACAGAGGGAGTAA 57.302 37.500 0.00 0.00 34.02 2.24
685 1346 6.349611 CCACATCAAGTATTTCCAAACAGAGG 60.350 42.308 0.00 0.00 0.00 3.69
689 1350 6.723298 AACCACATCAAGTATTTCCAAACA 57.277 33.333 0.00 0.00 0.00 2.83
693 1354 8.472007 AACTAAAACCACATCAAGTATTTCCA 57.528 30.769 0.00 0.00 0.00 3.53
694 1355 8.793592 AGAACTAAAACCACATCAAGTATTTCC 58.206 33.333 0.00 0.00 0.00 3.13
806 1484 5.382616 TGGCTACTCGGTGAAGAAGATATA 58.617 41.667 0.00 0.00 0.00 0.86
954 1642 1.726192 TATAGCGGAGGGGCTGAGGA 61.726 60.000 0.00 0.00 44.50 3.71
1002 1715 1.133363 CGTAATGCAATGCGTGGTGC 61.133 55.000 0.00 0.00 46.70 5.01
1021 1753 0.247894 TTGTTCGCGCTGTTGTTGTC 60.248 50.000 5.56 0.00 0.00 3.18
1054 1793 1.367659 CTGCTGGTGCTAGCTTCTTC 58.632 55.000 17.23 3.25 44.01 2.87
1067 1821 4.021631 CGTGTGTGCTGCTGCTGG 62.022 66.667 17.00 0.00 40.48 4.85
1094 1855 2.695666 CCCATTCCGTCTGTATGTCTCT 59.304 50.000 0.00 0.00 0.00 3.10
1095 1856 2.803492 GCCCATTCCGTCTGTATGTCTC 60.803 54.545 0.00 0.00 0.00 3.36
1096 1857 1.139058 GCCCATTCCGTCTGTATGTCT 59.861 52.381 0.00 0.00 0.00 3.41
1097 1858 1.583054 GCCCATTCCGTCTGTATGTC 58.417 55.000 0.00 0.00 0.00 3.06
1098 1859 0.180406 GGCCCATTCCGTCTGTATGT 59.820 55.000 0.00 0.00 0.00 2.29
1099 1860 0.469917 AGGCCCATTCCGTCTGTATG 59.530 55.000 0.00 0.00 0.00 2.39
1100 1861 0.469917 CAGGCCCATTCCGTCTGTAT 59.530 55.000 0.00 0.00 0.00 2.29
1101 1862 0.907704 ACAGGCCCATTCCGTCTGTA 60.908 55.000 0.00 0.00 36.98 2.74
1102 1863 2.224159 ACAGGCCCATTCCGTCTGT 61.224 57.895 0.00 0.00 34.30 3.41
1103 1864 1.746615 CACAGGCCCATTCCGTCTG 60.747 63.158 0.00 0.00 0.00 3.51
1153 1951 4.082523 CACCACCCTCGCGGTCAT 62.083 66.667 6.13 0.00 43.58 3.06
1329 2127 2.025155 GGGAGCACGAAGTAGATCTGA 58.975 52.381 5.18 0.00 41.61 3.27
1573 2380 4.835891 CCTCCCGCCTCGGTAGGT 62.836 72.222 8.49 0.00 46.04 3.08
1648 2463 2.430921 GTCAGTCTCGTGTGCCCG 60.431 66.667 0.00 0.00 0.00 6.13
1723 2572 2.894257 ATCAGCGGCAGGAACCACA 61.894 57.895 1.45 0.00 0.00 4.17
1783 2640 4.827284 CCACCCAACTTGACAAACTAATCT 59.173 41.667 0.00 0.00 0.00 2.40
1864 6345 3.947612 ATCTTCATGTGCATTCCCTCT 57.052 42.857 0.00 0.00 0.00 3.69
1908 6389 5.182487 ACGTACTCCACATCATTTATGCAA 58.818 37.500 0.00 0.00 39.39 4.08
1911 6392 7.946655 ACATACGTACTCCACATCATTTATG 57.053 36.000 0.00 0.00 41.74 1.90
1935 6419 5.252164 AGGGGACTTAATGCCAGTAACTAAA 59.748 40.000 0.00 0.00 41.79 1.85
1948 6432 2.358195 GGGCATGAACAGGGGACTTAAT 60.358 50.000 0.00 0.00 40.21 1.40
1957 6441 3.967332 AAAAATGAGGGCATGAACAGG 57.033 42.857 0.00 0.00 34.26 4.00
1964 6448 5.482006 GAGCAAACTTAAAAATGAGGGCAT 58.518 37.500 0.00 0.00 35.92 4.40
2115 6628 9.373603 GGTGTGTATGTAAATACTTGTGATACA 57.626 33.333 4.68 0.00 0.00 2.29
2187 6700 5.646793 CGATGGATGCATGAGGAAGAATATT 59.353 40.000 2.46 0.00 0.00 1.28
2302 7370 2.493501 GTCGAGTACTTCCCGGCC 59.506 66.667 0.00 0.00 0.00 6.13
2316 7384 2.074576 TGAGTCTTCTGGTCTACGTCG 58.925 52.381 0.00 0.00 0.00 5.12
2325 7393 5.047021 TCACCTGTTCTAATGAGTCTTCTGG 60.047 44.000 0.00 0.00 0.00 3.86
2344 9068 5.880901 ACATCTTGGTCAAATACTTCACCT 58.119 37.500 0.00 0.00 0.00 4.00
2530 9256 9.944376 TGCAATGATCCCTTATAGTTTATACTC 57.056 33.333 0.00 0.00 35.78 2.59
2531 9257 9.726438 GTGCAATGATCCCTTATAGTTTATACT 57.274 33.333 0.00 0.00 38.44 2.12
2532 9258 9.502091 TGTGCAATGATCCCTTATAGTTTATAC 57.498 33.333 0.00 0.00 0.00 1.47
2534 9260 9.017509 CATGTGCAATGATCCCTTATAGTTTAT 57.982 33.333 0.00 0.00 0.00 1.40
2551 9277 0.033781 AAACCAAGCGCATGTGCAAT 59.966 45.000 31.29 17.78 42.21 3.56
2601 9327 7.180229 TCCAAAGATGAGACTATTTCTACCACA 59.820 37.037 0.00 0.00 33.22 4.17
2629 9356 6.574462 CGTGTTTCGGACGTTTAAATTAACAT 59.426 34.615 0.00 0.00 35.71 2.71
2724 9452 5.951747 AGCCAAAGTGTACATATTCCACATT 59.048 36.000 0.00 0.00 0.00 2.71
2755 9483 6.074356 CCAAAAATTAAAACTTCAGTCGGCTG 60.074 38.462 11.77 11.77 43.87 4.85
2756 9484 5.983118 CCAAAAATTAAAACTTCAGTCGGCT 59.017 36.000 0.00 0.00 0.00 5.52
2757 9485 5.751509 ACCAAAAATTAAAACTTCAGTCGGC 59.248 36.000 0.00 0.00 0.00 5.54
2758 9486 6.975772 TGACCAAAAATTAAAACTTCAGTCGG 59.024 34.615 0.00 0.00 0.00 4.79
2759 9487 7.700656 ACTGACCAAAAATTAAAACTTCAGTCG 59.299 33.333 0.00 0.00 37.24 4.18
2760 9488 8.926715 ACTGACCAAAAATTAAAACTTCAGTC 57.073 30.769 0.00 0.00 37.24 3.51
2761 9489 7.700656 CGACTGACCAAAAATTAAAACTTCAGT 59.299 33.333 0.00 0.00 42.89 3.41
2762 9490 7.913297 TCGACTGACCAAAAATTAAAACTTCAG 59.087 33.333 0.00 0.00 35.21 3.02
2763 9491 7.763356 TCGACTGACCAAAAATTAAAACTTCA 58.237 30.769 0.00 0.00 0.00 3.02
2764 9492 8.797266 ATCGACTGACCAAAAATTAAAACTTC 57.203 30.769 0.00 0.00 0.00 3.01
2765 9493 9.244799 GAATCGACTGACCAAAAATTAAAACTT 57.755 29.630 0.00 0.00 0.00 2.66
2766 9494 8.630037 AGAATCGACTGACCAAAAATTAAAACT 58.370 29.630 0.00 0.00 0.00 2.66
2767 9495 8.690840 CAGAATCGACTGACCAAAAATTAAAAC 58.309 33.333 0.00 0.00 39.94 2.43
2768 9496 8.410141 ACAGAATCGACTGACCAAAAATTAAAA 58.590 29.630 9.80 0.00 40.63 1.52
2769 9497 7.860373 CACAGAATCGACTGACCAAAAATTAAA 59.140 33.333 9.80 0.00 40.63 1.52
2770 9498 7.227711 TCACAGAATCGACTGACCAAAAATTAA 59.772 33.333 9.80 0.00 40.63 1.40
2771 9499 6.708502 TCACAGAATCGACTGACCAAAAATTA 59.291 34.615 9.80 0.00 40.63 1.40
2772 9500 5.530915 TCACAGAATCGACTGACCAAAAATT 59.469 36.000 9.80 0.00 40.63 1.82
2773 9501 5.049405 GTCACAGAATCGACTGACCAAAAAT 60.049 40.000 9.80 0.00 40.63 1.82
2774 9502 4.272504 GTCACAGAATCGACTGACCAAAAA 59.727 41.667 9.80 0.00 40.63 1.94
2775 9503 3.807622 GTCACAGAATCGACTGACCAAAA 59.192 43.478 9.80 0.00 40.63 2.44
2776 9504 3.390135 GTCACAGAATCGACTGACCAAA 58.610 45.455 9.80 0.00 40.63 3.28
2777 9505 2.288825 GGTCACAGAATCGACTGACCAA 60.289 50.000 16.84 0.00 40.63 3.67
2778 9506 1.272490 GGTCACAGAATCGACTGACCA 59.728 52.381 16.84 0.00 40.63 4.02
2779 9507 1.272490 TGGTCACAGAATCGACTGACC 59.728 52.381 15.61 15.61 40.63 4.02
2780 9508 2.724977 TGGTCACAGAATCGACTGAC 57.275 50.000 9.80 5.50 40.63 3.51
2781 9509 3.181500 CGTATGGTCACAGAATCGACTGA 60.181 47.826 9.80 0.00 40.63 3.41
2782 9510 3.108881 CGTATGGTCACAGAATCGACTG 58.891 50.000 1.70 1.70 42.78 3.51
2783 9511 2.753452 ACGTATGGTCACAGAATCGACT 59.247 45.455 0.00 0.00 32.57 4.18
2784 9512 3.146618 ACGTATGGTCACAGAATCGAC 57.853 47.619 0.00 0.00 0.00 4.20
2785 9513 3.191791 TCAACGTATGGTCACAGAATCGA 59.808 43.478 0.00 0.00 0.00 3.59
2786 9514 3.507786 TCAACGTATGGTCACAGAATCG 58.492 45.455 0.00 0.00 0.00 3.34
2787 9515 5.580691 TCAATCAACGTATGGTCACAGAATC 59.419 40.000 0.00 0.00 0.00 2.52
2788 9516 5.487433 TCAATCAACGTATGGTCACAGAAT 58.513 37.500 0.00 0.00 0.00 2.40
2789 9517 4.888917 TCAATCAACGTATGGTCACAGAA 58.111 39.130 0.00 0.00 0.00 3.02
2790 9518 4.529109 TCAATCAACGTATGGTCACAGA 57.471 40.909 0.00 0.00 0.00 3.41
2791 9519 4.690748 ACTTCAATCAACGTATGGTCACAG 59.309 41.667 0.00 0.00 0.00 3.66
2792 9520 4.450757 CACTTCAATCAACGTATGGTCACA 59.549 41.667 0.00 0.00 0.00 3.58
2793 9521 4.669197 GCACTTCAATCAACGTATGGTCAC 60.669 45.833 0.00 0.00 0.00 3.67
2794 9522 3.435327 GCACTTCAATCAACGTATGGTCA 59.565 43.478 0.00 0.00 0.00 4.02
2795 9523 3.684788 AGCACTTCAATCAACGTATGGTC 59.315 43.478 0.00 0.00 0.00 4.02
2796 9524 3.674997 AGCACTTCAATCAACGTATGGT 58.325 40.909 0.00 0.00 0.00 3.55
2797 9525 4.685169 AAGCACTTCAATCAACGTATGG 57.315 40.909 0.00 0.00 0.00 2.74
2798 9526 5.340403 CACAAAGCACTTCAATCAACGTATG 59.660 40.000 0.00 0.00 0.00 2.39
2799 9527 5.238432 TCACAAAGCACTTCAATCAACGTAT 59.762 36.000 0.00 0.00 0.00 3.06
2800 9528 4.572795 TCACAAAGCACTTCAATCAACGTA 59.427 37.500 0.00 0.00 0.00 3.57
2801 9529 3.376859 TCACAAAGCACTTCAATCAACGT 59.623 39.130 0.00 0.00 0.00 3.99
2802 9530 3.951306 TCACAAAGCACTTCAATCAACG 58.049 40.909 0.00 0.00 0.00 4.10
2803 9531 5.565259 CGTATCACAAAGCACTTCAATCAAC 59.435 40.000 0.00 0.00 0.00 3.18
2804 9532 5.334802 CCGTATCACAAAGCACTTCAATCAA 60.335 40.000 0.00 0.00 0.00 2.57
2805 9533 4.154015 CCGTATCACAAAGCACTTCAATCA 59.846 41.667 0.00 0.00 0.00 2.57
2806 9534 4.154195 ACCGTATCACAAAGCACTTCAATC 59.846 41.667 0.00 0.00 0.00 2.67
2807 9535 4.072131 ACCGTATCACAAAGCACTTCAAT 58.928 39.130 0.00 0.00 0.00 2.57
2808 9536 3.249799 CACCGTATCACAAAGCACTTCAA 59.750 43.478 0.00 0.00 0.00 2.69
2809 9537 2.805671 CACCGTATCACAAAGCACTTCA 59.194 45.455 0.00 0.00 0.00 3.02
2810 9538 2.806244 ACACCGTATCACAAAGCACTTC 59.194 45.455 0.00 0.00 0.00 3.01
2811 9539 2.548057 CACACCGTATCACAAAGCACTT 59.452 45.455 0.00 0.00 0.00 3.16
2812 9540 2.143122 CACACCGTATCACAAAGCACT 58.857 47.619 0.00 0.00 0.00 4.40
2813 9541 2.139917 TCACACCGTATCACAAAGCAC 58.860 47.619 0.00 0.00 0.00 4.40
2814 9542 2.036604 TCTCACACCGTATCACAAAGCA 59.963 45.455 0.00 0.00 0.00 3.91
2815 9543 2.668457 CTCTCACACCGTATCACAAAGC 59.332 50.000 0.00 0.00 0.00 3.51
2816 9544 2.668457 GCTCTCACACCGTATCACAAAG 59.332 50.000 0.00 0.00 0.00 2.77
2817 9545 2.299013 AGCTCTCACACCGTATCACAAA 59.701 45.455 0.00 0.00 0.00 2.83
2818 9546 1.893137 AGCTCTCACACCGTATCACAA 59.107 47.619 0.00 0.00 0.00 3.33
2819 9547 1.472878 GAGCTCTCACACCGTATCACA 59.527 52.381 6.43 0.00 0.00 3.58
2820 9548 1.472878 TGAGCTCTCACACCGTATCAC 59.527 52.381 16.19 0.00 34.14 3.06
2821 9549 1.834188 TGAGCTCTCACACCGTATCA 58.166 50.000 16.19 0.00 34.14 2.15
2831 9559 1.181741 AACTCCGCTGTGAGCTCTCA 61.182 55.000 16.19 16.66 39.60 3.27
2832 9560 0.735632 CAACTCCGCTGTGAGCTCTC 60.736 60.000 16.19 12.36 39.60 3.20
2833 9561 1.181741 TCAACTCCGCTGTGAGCTCT 61.182 55.000 16.19 0.00 39.60 4.09
2834 9562 1.011451 GTCAACTCCGCTGTGAGCTC 61.011 60.000 6.82 6.82 39.60 4.09
2835 9563 1.005630 GTCAACTCCGCTGTGAGCT 60.006 57.895 0.00 0.00 39.60 4.09
2836 9564 1.005630 AGTCAACTCCGCTGTGAGC 60.006 57.895 0.00 0.00 35.72 4.26
2837 9565 0.315251 TCAGTCAACTCCGCTGTGAG 59.685 55.000 0.00 0.00 38.37 3.51
2838 9566 0.032130 GTCAGTCAACTCCGCTGTGA 59.968 55.000 0.00 0.00 0.00 3.58
2839 9567 0.946221 GGTCAGTCAACTCCGCTGTG 60.946 60.000 0.00 0.00 0.00 3.66
2840 9568 1.367840 GGTCAGTCAACTCCGCTGT 59.632 57.895 0.00 0.00 0.00 4.40
2841 9569 1.374758 GGGTCAGTCAACTCCGCTG 60.375 63.158 0.00 0.00 0.00 5.18
2842 9570 0.251653 TAGGGTCAGTCAACTCCGCT 60.252 55.000 2.74 2.74 0.00 5.52
2843 9571 0.824759 ATAGGGTCAGTCAACTCCGC 59.175 55.000 0.00 0.00 0.00 5.54
2844 9572 2.361438 GGTATAGGGTCAGTCAACTCCG 59.639 54.545 0.00 0.00 0.00 4.63
2845 9573 3.644335 AGGTATAGGGTCAGTCAACTCC 58.356 50.000 0.00 0.00 0.00 3.85
2846 9574 4.957327 AGAAGGTATAGGGTCAGTCAACTC 59.043 45.833 0.00 0.00 0.00 3.01
2847 9575 4.949121 AGAAGGTATAGGGTCAGTCAACT 58.051 43.478 0.00 0.00 0.00 3.16
2848 9576 5.678955 AAGAAGGTATAGGGTCAGTCAAC 57.321 43.478 0.00 0.00 0.00 3.18
2849 9577 6.958192 ACTAAAGAAGGTATAGGGTCAGTCAA 59.042 38.462 0.00 0.00 0.00 3.18
2850 9578 6.500336 ACTAAAGAAGGTATAGGGTCAGTCA 58.500 40.000 0.00 0.00 0.00 3.41
2851 9579 6.238703 CGACTAAAGAAGGTATAGGGTCAGTC 60.239 46.154 0.00 0.00 0.00 3.51
2852 9580 5.593502 CGACTAAAGAAGGTATAGGGTCAGT 59.406 44.000 0.00 0.00 0.00 3.41
2853 9581 5.826737 TCGACTAAAGAAGGTATAGGGTCAG 59.173 44.000 0.00 0.00 0.00 3.51
2854 9582 5.759059 TCGACTAAAGAAGGTATAGGGTCA 58.241 41.667 0.00 0.00 0.00 4.02
2855 9583 6.897706 ATCGACTAAAGAAGGTATAGGGTC 57.102 41.667 0.00 0.00 0.00 4.46
2856 9584 7.201983 GGAAATCGACTAAAGAAGGTATAGGGT 60.202 40.741 0.00 0.00 0.00 4.34
2857 9585 7.153315 GGAAATCGACTAAAGAAGGTATAGGG 58.847 42.308 0.00 0.00 0.00 3.53
2858 9586 7.153315 GGGAAATCGACTAAAGAAGGTATAGG 58.847 42.308 0.00 0.00 0.00 2.57
2859 9587 6.862090 CGGGAAATCGACTAAAGAAGGTATAG 59.138 42.308 0.00 0.00 0.00 1.31
2860 9588 6.322201 ACGGGAAATCGACTAAAGAAGGTATA 59.678 38.462 0.00 0.00 0.00 1.47
2861 9589 5.128335 ACGGGAAATCGACTAAAGAAGGTAT 59.872 40.000 0.00 0.00 0.00 2.73
2862 9590 4.463891 ACGGGAAATCGACTAAAGAAGGTA 59.536 41.667 0.00 0.00 0.00 3.08
2863 9591 3.260128 ACGGGAAATCGACTAAAGAAGGT 59.740 43.478 0.00 0.00 0.00 3.50
2864 9592 3.858247 ACGGGAAATCGACTAAAGAAGG 58.142 45.455 0.00 0.00 0.00 3.46
2865 9593 5.407387 TGAAACGGGAAATCGACTAAAGAAG 59.593 40.000 0.00 0.00 0.00 2.85
2866 9594 5.299148 TGAAACGGGAAATCGACTAAAGAA 58.701 37.500 0.00 0.00 0.00 2.52
2867 9595 4.885413 TGAAACGGGAAATCGACTAAAGA 58.115 39.130 0.00 0.00 0.00 2.52
2868 9596 5.796350 ATGAAACGGGAAATCGACTAAAG 57.204 39.130 0.00 0.00 0.00 1.85
2869 9597 5.618195 GCAATGAAACGGGAAATCGACTAAA 60.618 40.000 0.00 0.00 0.00 1.85
2870 9598 4.142773 GCAATGAAACGGGAAATCGACTAA 60.143 41.667 0.00 0.00 0.00 2.24
2871 9599 3.372822 GCAATGAAACGGGAAATCGACTA 59.627 43.478 0.00 0.00 0.00 2.59
2872 9600 2.161609 GCAATGAAACGGGAAATCGACT 59.838 45.455 0.00 0.00 0.00 4.18
2873 9601 2.161609 AGCAATGAAACGGGAAATCGAC 59.838 45.455 0.00 0.00 0.00 4.20
2874 9602 2.418628 GAGCAATGAAACGGGAAATCGA 59.581 45.455 0.00 0.00 0.00 3.59
2875 9603 2.161410 TGAGCAATGAAACGGGAAATCG 59.839 45.455 0.00 0.00 0.00 3.34
2876 9604 3.191371 ACTGAGCAATGAAACGGGAAATC 59.809 43.478 0.00 0.00 0.00 2.17
2877 9605 3.057315 CACTGAGCAATGAAACGGGAAAT 60.057 43.478 0.00 0.00 0.00 2.17
2878 9606 2.293122 CACTGAGCAATGAAACGGGAAA 59.707 45.455 0.00 0.00 0.00 3.13
2879 9607 1.879380 CACTGAGCAATGAAACGGGAA 59.121 47.619 0.00 0.00 0.00 3.97
2880 9608 1.522668 CACTGAGCAATGAAACGGGA 58.477 50.000 0.00 0.00 0.00 5.14
2881 9609 0.109597 GCACTGAGCAATGAAACGGG 60.110 55.000 0.00 0.00 44.79 5.28
2882 9610 3.389741 GCACTGAGCAATGAAACGG 57.610 52.632 0.00 0.00 44.79 4.44
2892 9620 3.181967 CTACGGCGTGCACTGAGC 61.182 66.667 24.86 11.02 45.96 4.26
2893 9621 3.181967 GCTACGGCGTGCACTGAG 61.182 66.667 24.86 12.06 0.00 3.35
2894 9622 4.735132 GGCTACGGCGTGCACTGA 62.735 66.667 24.86 0.00 39.81 3.41
2895 9623 4.742201 AGGCTACGGCGTGCACTG 62.742 66.667 24.86 9.73 39.81 3.66
2896 9624 3.934391 GAAGGCTACGGCGTGCACT 62.934 63.158 24.86 18.02 39.81 4.40
2897 9625 3.488090 GAAGGCTACGGCGTGCAC 61.488 66.667 24.86 16.29 39.81 4.57
2898 9626 1.950973 TATGAAGGCTACGGCGTGCA 61.951 55.000 24.86 10.98 44.64 4.57
2899 9627 0.600255 ATATGAAGGCTACGGCGTGC 60.600 55.000 24.86 22.42 39.81 5.34
2900 9628 1.139989 CATATGAAGGCTACGGCGTG 58.860 55.000 24.86 13.74 39.81 5.34
2901 9629 0.600255 GCATATGAAGGCTACGGCGT 60.600 55.000 19.64 19.64 39.81 5.68
2902 9630 0.599991 TGCATATGAAGGCTACGGCG 60.600 55.000 6.97 4.80 39.81 6.46
2903 9631 1.734465 GATGCATATGAAGGCTACGGC 59.266 52.381 6.97 0.00 32.35 5.68
2904 9632 3.044235 TGATGCATATGAAGGCTACGG 57.956 47.619 6.97 0.00 32.35 4.02
2905 9633 4.966249 CATTGATGCATATGAAGGCTACG 58.034 43.478 6.97 0.00 32.35 3.51
2929 9657 1.527611 CCCGGAGACATGCATGCAT 60.528 57.895 27.46 27.46 37.08 3.96
2930 9658 2.124612 CCCGGAGACATGCATGCA 60.125 61.111 26.53 25.04 0.00 3.96
2931 9659 2.903855 CCCCGGAGACATGCATGC 60.904 66.667 26.53 18.25 0.00 4.06
2932 9660 1.077501 AACCCCGGAGACATGCATG 60.078 57.895 25.09 25.09 0.00 4.06
2933 9661 1.077501 CAACCCCGGAGACATGCAT 60.078 57.895 0.73 0.00 0.00 3.96
2934 9662 2.220586 TCAACCCCGGAGACATGCA 61.221 57.895 0.73 0.00 0.00 3.96
2935 9663 1.745489 GTCAACCCCGGAGACATGC 60.745 63.158 0.73 0.00 32.68 4.06
2936 9664 1.447838 CGTCAACCCCGGAGACATG 60.448 63.158 0.73 0.00 32.68 3.21
2937 9665 1.608336 TCGTCAACCCCGGAGACAT 60.608 57.895 0.73 0.00 32.68 3.06
2938 9666 2.203523 TCGTCAACCCCGGAGACA 60.204 61.111 0.73 0.00 32.68 3.41
2939 9667 2.210341 GAGTCGTCAACCCCGGAGAC 62.210 65.000 0.73 4.54 0.00 3.36
2940 9668 1.975407 GAGTCGTCAACCCCGGAGA 60.975 63.158 0.73 0.00 0.00 3.71
2941 9669 1.533469 AAGAGTCGTCAACCCCGGAG 61.533 60.000 0.73 0.00 0.00 4.63
2942 9670 1.532316 AAGAGTCGTCAACCCCGGA 60.532 57.895 0.73 0.00 0.00 5.14
2943 9671 1.374252 CAAGAGTCGTCAACCCCGG 60.374 63.158 0.00 0.00 0.00 5.73
2944 9672 2.027625 GCAAGAGTCGTCAACCCCG 61.028 63.158 0.00 0.00 0.00 5.73
2945 9673 0.951040 CTGCAAGAGTCGTCAACCCC 60.951 60.000 0.00 0.00 34.07 4.95
2946 9674 1.569479 GCTGCAAGAGTCGTCAACCC 61.569 60.000 0.00 0.00 34.07 4.11
2947 9675 1.862806 GCTGCAAGAGTCGTCAACC 59.137 57.895 0.00 0.00 34.07 3.77
2948 9676 1.488957 CGCTGCAAGAGTCGTCAAC 59.511 57.895 0.00 0.00 34.07 3.18
2949 9677 2.310233 GCGCTGCAAGAGTCGTCAA 61.310 57.895 0.00 0.00 35.56 3.18
2950 9678 2.734723 GCGCTGCAAGAGTCGTCA 60.735 61.111 0.00 0.00 35.56 4.35
2951 9679 2.734723 TGCGCTGCAAGAGTCGTC 60.735 61.111 9.73 0.00 35.56 4.20
2952 9680 3.038417 GTGCGCTGCAAGAGTCGT 61.038 61.111 9.73 0.00 41.47 4.34
2953 9681 2.385875 ATGTGCGCTGCAAGAGTCG 61.386 57.895 9.73 0.00 41.47 4.18
2954 9682 1.134075 CATGTGCGCTGCAAGAGTC 59.866 57.895 9.73 0.00 41.47 3.36
2955 9683 2.974489 GCATGTGCGCTGCAAGAGT 61.974 57.895 14.53 0.00 41.47 3.24
2956 9684 2.202440 GCATGTGCGCTGCAAGAG 60.202 61.111 14.53 6.87 41.47 2.85
2957 9685 2.979120 TGCATGTGCGCTGCAAGA 60.979 55.556 19.10 0.00 46.06 3.02
2961 9689 3.133767 ATCCATGCATGTGCGCTGC 62.134 57.895 24.58 11.50 45.83 5.25
2962 9690 1.008881 GATCCATGCATGTGCGCTG 60.009 57.895 24.58 8.85 45.83 5.18
2963 9691 2.540228 CGATCCATGCATGTGCGCT 61.540 57.895 24.58 1.69 45.83 5.92
2964 9692 2.050639 TTCGATCCATGCATGTGCGC 62.051 55.000 24.58 0.00 45.83 6.09
2965 9693 0.589708 ATTCGATCCATGCATGTGCG 59.410 50.000 24.58 22.11 45.83 5.34
2966 9694 1.929038 GCATTCGATCCATGCATGTGC 60.929 52.381 24.58 20.47 45.50 4.57
2967 9695 2.046283 GCATTCGATCCATGCATGTG 57.954 50.000 24.58 15.12 45.50 3.21
2973 9701 0.955905 TGGCATGCATTCGATCCATG 59.044 50.000 21.36 13.15 39.38 3.66
2974 9702 1.919240 ATGGCATGCATTCGATCCAT 58.081 45.000 21.36 7.99 0.00 3.41
2975 9703 1.694844 AATGGCATGCATTCGATCCA 58.305 45.000 21.36 5.70 0.00 3.41
2976 9704 2.806608 AAATGGCATGCATTCGATCC 57.193 45.000 21.36 0.00 0.00 3.36
2977 9705 5.522456 TCTAAAAATGGCATGCATTCGATC 58.478 37.500 21.36 0.00 0.00 3.69
2978 9706 5.068198 ACTCTAAAAATGGCATGCATTCGAT 59.932 36.000 21.36 3.73 0.00 3.59
2979 9707 4.398988 ACTCTAAAAATGGCATGCATTCGA 59.601 37.500 21.36 6.72 0.00 3.71
2980 9708 4.501559 CACTCTAAAAATGGCATGCATTCG 59.498 41.667 21.36 2.75 0.00 3.34
2981 9709 5.290158 CACACTCTAAAAATGGCATGCATTC 59.710 40.000 21.36 2.31 0.00 2.67
2982 9710 5.172934 CACACTCTAAAAATGGCATGCATT 58.827 37.500 21.36 14.02 0.00 3.56
2983 9711 4.221262 ACACACTCTAAAAATGGCATGCAT 59.779 37.500 21.36 8.40 0.00 3.96
2984 9712 3.573538 ACACACTCTAAAAATGGCATGCA 59.426 39.130 21.36 6.13 0.00 3.96
2985 9713 3.922240 CACACACTCTAAAAATGGCATGC 59.078 43.478 9.90 9.90 0.00 4.06
2986 9714 4.919168 CACACACACTCTAAAAATGGCATG 59.081 41.667 0.00 0.00 0.00 4.06
2987 9715 4.022068 CCACACACACTCTAAAAATGGCAT 60.022 41.667 0.00 0.00 0.00 4.40
2988 9716 3.317711 CCACACACACTCTAAAAATGGCA 59.682 43.478 0.00 0.00 0.00 4.92
2989 9717 3.317993 ACCACACACACTCTAAAAATGGC 59.682 43.478 0.00 0.00 0.00 4.40
2990 9718 4.338118 ACACCACACACACTCTAAAAATGG 59.662 41.667 0.00 0.00 0.00 3.16
2991 9719 5.163663 ACACACCACACACACTCTAAAAATG 60.164 40.000 0.00 0.00 0.00 2.32
2992 9720 4.947388 ACACACCACACACACTCTAAAAAT 59.053 37.500 0.00 0.00 0.00 1.82
2993 9721 4.155099 CACACACCACACACACTCTAAAAA 59.845 41.667 0.00 0.00 0.00 1.94
2994 9722 3.687212 CACACACCACACACACTCTAAAA 59.313 43.478 0.00 0.00 0.00 1.52
2995 9723 3.266636 CACACACCACACACACTCTAAA 58.733 45.455 0.00 0.00 0.00 1.85
2996 9724 2.235155 ACACACACCACACACACTCTAA 59.765 45.455 0.00 0.00 0.00 2.10
2997 9725 1.828595 ACACACACCACACACACTCTA 59.171 47.619 0.00 0.00 0.00 2.43
2998 9726 0.613260 ACACACACCACACACACTCT 59.387 50.000 0.00 0.00 0.00 3.24
2999 9727 1.006832 GACACACACCACACACACTC 58.993 55.000 0.00 0.00 0.00 3.51
3000 9728 0.392461 GGACACACACCACACACACT 60.392 55.000 0.00 0.00 0.00 3.55
3001 9729 1.701545 CGGACACACACCACACACAC 61.702 60.000 0.00 0.00 0.00 3.82
3002 9730 1.448717 CGGACACACACCACACACA 60.449 57.895 0.00 0.00 0.00 3.72
3003 9731 1.448893 ACGGACACACACCACACAC 60.449 57.895 0.00 0.00 0.00 3.82
3004 9732 1.448717 CACGGACACACACCACACA 60.449 57.895 0.00 0.00 0.00 3.72
3005 9733 2.819552 GCACGGACACACACCACAC 61.820 63.158 0.00 0.00 0.00 3.82
3006 9734 2.512745 GCACGGACACACACCACA 60.513 61.111 0.00 0.00 0.00 4.17
3007 9735 1.373590 AAAGCACGGACACACACCAC 61.374 55.000 0.00 0.00 0.00 4.16
3008 9736 0.678366 AAAAGCACGGACACACACCA 60.678 50.000 0.00 0.00 0.00 4.17
3009 9737 0.028902 GAAAAGCACGGACACACACC 59.971 55.000 0.00 0.00 0.00 4.16
3010 9738 1.003866 GAGAAAAGCACGGACACACAC 60.004 52.381 0.00 0.00 0.00 3.82
3011 9739 1.295792 GAGAAAAGCACGGACACACA 58.704 50.000 0.00 0.00 0.00 3.72
3012 9740 0.586802 GGAGAAAAGCACGGACACAC 59.413 55.000 0.00 0.00 0.00 3.82
3013 9741 0.468226 AGGAGAAAAGCACGGACACA 59.532 50.000 0.00 0.00 0.00 3.72
3014 9742 1.264288 CAAGGAGAAAAGCACGGACAC 59.736 52.381 0.00 0.00 0.00 3.67
3015 9743 1.134220 ACAAGGAGAAAAGCACGGACA 60.134 47.619 0.00 0.00 0.00 4.02
3016 9744 1.594331 ACAAGGAGAAAAGCACGGAC 58.406 50.000 0.00 0.00 0.00 4.79
3017 9745 2.341846 AACAAGGAGAAAAGCACGGA 57.658 45.000 0.00 0.00 0.00 4.69
3018 9746 3.436700 AAAACAAGGAGAAAAGCACGG 57.563 42.857 0.00 0.00 0.00 4.94
3036 9764 7.846644 AATGTGCATCAAAACAGAAGAAAAA 57.153 28.000 0.00 0.00 0.00 1.94
3037 9765 7.846644 AAATGTGCATCAAAACAGAAGAAAA 57.153 28.000 0.00 0.00 0.00 2.29
3038 9766 7.846644 AAAATGTGCATCAAAACAGAAGAAA 57.153 28.000 0.00 0.00 0.00 2.52
3039 9767 7.676807 GCAAAAATGTGCATCAAAACAGAAGAA 60.677 33.333 0.00 0.00 44.29 2.52
3040 9768 6.238157 GCAAAAATGTGCATCAAAACAGAAGA 60.238 34.615 0.00 0.00 44.29 2.87
3041 9769 5.905181 GCAAAAATGTGCATCAAAACAGAAG 59.095 36.000 0.00 0.00 44.29 2.85
3042 9770 5.808403 GCAAAAATGTGCATCAAAACAGAA 58.192 33.333 0.00 0.00 44.29 3.02
3043 9771 5.406767 GCAAAAATGTGCATCAAAACAGA 57.593 34.783 0.00 0.00 44.29 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.