Multiple sequence alignment - TraesCS5D01G414000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G414000 chr5D 100.000 2540 0 0 1 2540 476707554 476710093 0.000000e+00 4691.0
1 TraesCS5D01G414000 chr5D 88.150 962 75 15 736 1686 476724986 476725919 0.000000e+00 1109.0
2 TraesCS5D01G414000 chr5D 86.863 1020 94 16 637 1654 476749489 476750470 0.000000e+00 1105.0
3 TraesCS5D01G414000 chr5D 85.204 980 97 29 709 1680 476784802 476785741 0.000000e+00 963.0
4 TraesCS5D01G414000 chr5D 91.099 191 17 0 195 385 269063734 269063924 2.510000e-65 259.0
5 TraesCS5D01G414000 chr5A 90.135 1551 81 29 407 1923 596032016 596033528 0.000000e+00 1951.0
6 TraesCS5D01G414000 chr5A 84.854 1063 93 32 637 1686 596044162 596045169 0.000000e+00 1009.0
7 TraesCS5D01G414000 chr5A 86.233 937 97 15 731 1657 596054645 596055559 0.000000e+00 987.0
8 TraesCS5D01G414000 chr5A 85.166 964 95 22 717 1665 596086525 596087455 0.000000e+00 944.0
9 TraesCS5D01G414000 chr5A 82.500 360 39 16 2182 2540 596034247 596034583 6.870000e-76 294.0
10 TraesCS5D01G414000 chr5A 80.000 250 34 11 1752 2000 596056322 596056556 1.210000e-38 171.0
11 TraesCS5D01G414000 chr5B 91.345 1294 74 18 407 1686 584126243 584127512 0.000000e+00 1735.0
12 TraesCS5D01G414000 chr5B 86.891 862 74 14 736 1592 584142353 584143180 0.000000e+00 929.0
13 TraesCS5D01G414000 chr5B 84.454 952 84 28 637 1582 584245441 584246334 0.000000e+00 880.0
14 TraesCS5D01G414000 chr5B 92.417 211 15 1 1714 1923 584127504 584127714 1.480000e-77 300.0
15 TraesCS5D01G414000 chr5B 91.753 97 8 0 1 97 584124008 584124104 4.410000e-28 135.0
16 TraesCS5D01G414000 chr5B 96.226 53 2 0 132 184 584126182 584126234 1.250000e-13 87.9
17 TraesCS5D01G414000 chr5B 82.407 108 9 6 1761 1862 584143216 584143319 4.500000e-13 86.1
18 TraesCS5D01G414000 chr5B 79.208 101 14 3 2016 2116 584253674 584253767 2.110000e-06 63.9
19 TraesCS5D01G414000 chr5B 97.297 37 1 0 2022 2058 584293754 584293790 2.110000e-06 63.9
20 TraesCS5D01G414000 chr3D 91.623 191 16 0 195 385 351838165 351837975 5.390000e-67 265.0
21 TraesCS5D01G414000 chr3D 89.552 201 20 1 195 395 351006385 351006186 1.170000e-63 254.0
22 TraesCS5D01G414000 chr7D 91.099 191 17 0 195 385 297751340 297751150 2.510000e-65 259.0
23 TraesCS5D01G414000 chr4D 91.099 191 17 0 195 385 190142114 190141924 2.510000e-65 259.0
24 TraesCS5D01G414000 chr3A 90.722 194 18 0 192 385 82101435 82101628 2.510000e-65 259.0
25 TraesCS5D01G414000 chr2D 91.099 191 17 0 195 385 9924898 9925088 2.510000e-65 259.0
26 TraesCS5D01G414000 chr1D 89.756 205 17 4 195 397 398987133 398987335 2.510000e-65 259.0
27 TraesCS5D01G414000 chr1A 89.163 203 21 1 183 385 536569676 536569475 4.190000e-63 252.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G414000 chr5D 476707554 476710093 2539 False 4691.000 4691 100.00000 1 2540 1 chr5D.!!$F2 2539
1 TraesCS5D01G414000 chr5D 476724986 476725919 933 False 1109.000 1109 88.15000 736 1686 1 chr5D.!!$F3 950
2 TraesCS5D01G414000 chr5D 476749489 476750470 981 False 1105.000 1105 86.86300 637 1654 1 chr5D.!!$F4 1017
3 TraesCS5D01G414000 chr5D 476784802 476785741 939 False 963.000 963 85.20400 709 1680 1 chr5D.!!$F5 971
4 TraesCS5D01G414000 chr5A 596032016 596034583 2567 False 1122.500 1951 86.31750 407 2540 2 chr5A.!!$F3 2133
5 TraesCS5D01G414000 chr5A 596044162 596045169 1007 False 1009.000 1009 84.85400 637 1686 1 chr5A.!!$F1 1049
6 TraesCS5D01G414000 chr5A 596086525 596087455 930 False 944.000 944 85.16600 717 1665 1 chr5A.!!$F2 948
7 TraesCS5D01G414000 chr5A 596054645 596056556 1911 False 579.000 987 83.11650 731 2000 2 chr5A.!!$F4 1269
8 TraesCS5D01G414000 chr5B 584245441 584246334 893 False 880.000 880 84.45400 637 1582 1 chr5B.!!$F1 945
9 TraesCS5D01G414000 chr5B 584124008 584127714 3706 False 564.475 1735 92.93525 1 1923 4 chr5B.!!$F4 1922
10 TraesCS5D01G414000 chr5B 584142353 584143319 966 False 507.550 929 84.64900 736 1862 2 chr5B.!!$F5 1126

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 2239 0.108424 CACTCACAGCTACTGAGGGC 60.108 60.0 19.77 0.0 39.69 5.19 F
719 2766 0.249699 TGACTGTGACCGCAACGAAT 60.250 50.0 0.00 0.0 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1513 3651 0.312416 CTCTCGGAGATGGCGGTTAG 59.688 60.0 8.39 0.0 33.89 2.34 R
2333 5719 0.308684 AACGCAGTGCATGACTTGTG 59.691 50.0 16.83 0.0 45.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.071788 TGACAGGAAAATAGAAGTCACTGGT 59.928 40.000 0.00 0.00 31.72 4.00
55 56 5.305128 AGTGACATGATTGTTTGGAACCAAT 59.695 36.000 7.12 0.00 35.79 3.16
56 57 5.406175 GTGACATGATTGTTTGGAACCAATG 59.594 40.000 7.12 3.76 35.79 2.82
57 58 5.070180 TGACATGATTGTTTGGAACCAATGT 59.930 36.000 7.12 6.75 35.79 2.71
59 60 6.355747 ACATGATTGTTTGGAACCAATGTTT 58.644 32.000 7.12 0.00 35.70 2.83
97 98 3.674753 GCAGTTTGATGTGGCATTAACAC 59.325 43.478 0.00 0.00 39.26 3.32
99 100 4.919168 CAGTTTGATGTGGCATTAACACTG 59.081 41.667 0.00 0.00 39.52 3.66
101 102 4.502171 TTGATGTGGCATTAACACTGTG 57.498 40.909 6.19 6.19 39.52 3.66
102 103 3.749226 TGATGTGGCATTAACACTGTGA 58.251 40.909 15.86 0.00 39.52 3.58
103 104 4.334552 TGATGTGGCATTAACACTGTGAT 58.665 39.130 15.86 5.14 39.52 3.06
104 105 4.156373 TGATGTGGCATTAACACTGTGATG 59.844 41.667 15.86 9.05 39.52 3.07
105 106 3.485394 TGTGGCATTAACACTGTGATGT 58.515 40.909 15.86 1.84 39.52 3.06
107 108 4.229096 GTGGCATTAACACTGTGATGTTG 58.771 43.478 15.86 6.29 42.74 3.33
108 109 3.888323 TGGCATTAACACTGTGATGTTGT 59.112 39.130 15.86 0.00 42.74 3.32
110 111 5.532779 TGGCATTAACACTGTGATGTTGTTA 59.467 36.000 15.86 0.00 42.74 2.41
111 112 5.856455 GGCATTAACACTGTGATGTTGTTAC 59.144 40.000 15.86 0.00 42.74 2.50
112 113 5.563751 GCATTAACACTGTGATGTTGTTACG 59.436 40.000 15.86 0.00 42.74 3.18
113 114 6.655062 CATTAACACTGTGATGTTGTTACGT 58.345 36.000 15.86 0.00 42.74 3.57
114 115 6.665474 TTAACACTGTGATGTTGTTACGTT 57.335 33.333 15.86 0.00 42.74 3.99
115 116 5.554822 AACACTGTGATGTTGTTACGTTT 57.445 34.783 15.86 0.00 41.29 3.60
116 117 4.904116 ACACTGTGATGTTGTTACGTTTG 58.096 39.130 15.86 0.00 0.00 2.93
117 118 3.723764 CACTGTGATGTTGTTACGTTTGC 59.276 43.478 0.32 0.00 0.00 3.68
118 119 2.964123 CTGTGATGTTGTTACGTTTGCG 59.036 45.455 0.00 0.00 44.93 4.85
119 120 2.286477 TGTGATGTTGTTACGTTTGCGG 60.286 45.455 0.00 0.00 43.45 5.69
120 121 1.941294 TGATGTTGTTACGTTTGCGGT 59.059 42.857 0.00 0.00 43.45 5.68
123 124 3.316253 TGTTGTTACGTTTGCGGTAAC 57.684 42.857 0.00 7.65 43.45 2.50
124 125 2.031437 TGTTGTTACGTTTGCGGTAACC 59.969 45.455 11.09 0.00 43.45 2.85
125 126 2.237393 TGTTACGTTTGCGGTAACCT 57.763 45.000 11.09 0.00 43.45 3.50
177 2221 3.125316 GCTACAACGTTGTACAACCTCA 58.875 45.455 31.86 15.16 42.35 3.86
184 2228 2.794910 CGTTGTACAACCTCACTCACAG 59.205 50.000 28.43 10.16 38.03 3.66
185 2229 2.526304 TGTACAACCTCACTCACAGC 57.474 50.000 0.00 0.00 0.00 4.40
186 2230 2.039418 TGTACAACCTCACTCACAGCT 58.961 47.619 0.00 0.00 0.00 4.24
188 2232 2.821991 ACAACCTCACTCACAGCTAC 57.178 50.000 0.00 0.00 0.00 3.58
192 2236 2.166829 ACCTCACTCACAGCTACTGAG 58.833 52.381 15.86 15.86 40.97 3.35
193 2237 1.476085 CCTCACTCACAGCTACTGAGG 59.524 57.143 19.77 14.37 41.56 3.86
194 2238 1.476085 CTCACTCACAGCTACTGAGGG 59.524 57.143 19.77 17.18 40.11 4.30
195 2239 0.108424 CACTCACAGCTACTGAGGGC 60.108 60.000 19.77 0.00 39.69 5.19
196 2240 0.542938 ACTCACAGCTACTGAGGGCA 60.543 55.000 19.77 0.00 39.69 5.36
197 2241 0.829333 CTCACAGCTACTGAGGGCAT 59.171 55.000 11.31 0.00 35.18 4.40
198 2242 2.034878 CTCACAGCTACTGAGGGCATA 58.965 52.381 11.31 0.00 35.18 3.14
199 2243 2.432146 CTCACAGCTACTGAGGGCATAA 59.568 50.000 11.31 0.00 35.18 1.90
200 2244 3.041211 TCACAGCTACTGAGGGCATAAT 58.959 45.455 0.78 0.00 35.18 1.28
201 2245 3.455910 TCACAGCTACTGAGGGCATAATT 59.544 43.478 0.78 0.00 35.18 1.40
202 2246 3.562973 CACAGCTACTGAGGGCATAATTG 59.437 47.826 0.78 0.00 35.18 2.32
203 2247 3.144506 CAGCTACTGAGGGCATAATTGG 58.855 50.000 0.00 0.00 32.44 3.16
204 2248 2.780010 AGCTACTGAGGGCATAATTGGT 59.220 45.455 0.00 0.00 0.00 3.67
205 2249 3.203040 AGCTACTGAGGGCATAATTGGTT 59.797 43.478 0.00 0.00 0.00 3.67
206 2250 3.954258 GCTACTGAGGGCATAATTGGTTT 59.046 43.478 0.00 0.00 0.00 3.27
207 2251 4.202050 GCTACTGAGGGCATAATTGGTTTG 60.202 45.833 0.00 0.00 0.00 2.93
208 2252 3.099141 ACTGAGGGCATAATTGGTTTGG 58.901 45.455 0.00 0.00 0.00 3.28
209 2253 3.099141 CTGAGGGCATAATTGGTTTGGT 58.901 45.455 0.00 0.00 0.00 3.67
210 2254 2.830923 TGAGGGCATAATTGGTTTGGTG 59.169 45.455 0.00 0.00 0.00 4.17
211 2255 1.554617 AGGGCATAATTGGTTTGGTGC 59.445 47.619 0.00 0.00 32.56 5.01
212 2256 1.406751 GGGCATAATTGGTTTGGTGCC 60.407 52.381 5.66 5.66 43.90 5.01
213 2257 1.277557 GGCATAATTGGTTTGGTGCCA 59.722 47.619 9.14 0.00 43.99 4.92
247 2291 2.522836 AATGTTTGGCATTGCGTCAA 57.477 40.000 1.91 0.00 45.35 3.18
248 2292 2.522836 ATGTTTGGCATTGCGTCAAA 57.477 40.000 8.43 8.43 33.14 2.69
249 2293 2.522836 TGTTTGGCATTGCGTCAAAT 57.477 40.000 13.70 0.00 33.72 2.32
250 2294 3.650070 TGTTTGGCATTGCGTCAAATA 57.350 38.095 13.70 9.82 33.72 1.40
251 2295 4.185467 TGTTTGGCATTGCGTCAAATAT 57.815 36.364 13.70 0.00 33.72 1.28
252 2296 4.564041 TGTTTGGCATTGCGTCAAATATT 58.436 34.783 13.70 0.00 33.72 1.28
253 2297 4.388165 TGTTTGGCATTGCGTCAAATATTG 59.612 37.500 13.70 0.00 33.72 1.90
254 2298 4.446994 TTGGCATTGCGTCAAATATTGA 57.553 36.364 1.91 0.00 37.33 2.57
255 2299 8.994819 ATGTTTGGCATTGCGTCAAATATTGAC 61.995 37.037 13.70 12.12 44.67 3.18
283 2327 2.538512 GGTTGGTTACCGAGTTGTCT 57.461 50.000 0.00 0.00 37.12 3.41
284 2328 2.842457 GGTTGGTTACCGAGTTGTCTT 58.158 47.619 0.00 0.00 37.12 3.01
285 2329 2.546789 GGTTGGTTACCGAGTTGTCTTG 59.453 50.000 0.00 0.00 37.12 3.02
286 2330 1.873698 TGGTTACCGAGTTGTCTTGC 58.126 50.000 0.00 0.00 0.00 4.01
287 2331 1.154197 GGTTACCGAGTTGTCTTGCC 58.846 55.000 0.00 0.00 0.00 4.52
288 2332 1.270678 GGTTACCGAGTTGTCTTGCCT 60.271 52.381 0.00 0.00 0.00 4.75
289 2333 2.028748 GGTTACCGAGTTGTCTTGCCTA 60.029 50.000 0.00 0.00 0.00 3.93
290 2334 3.369157 GGTTACCGAGTTGTCTTGCCTAT 60.369 47.826 0.00 0.00 0.00 2.57
291 2335 2.674796 ACCGAGTTGTCTTGCCTATC 57.325 50.000 0.00 0.00 0.00 2.08
292 2336 2.180276 ACCGAGTTGTCTTGCCTATCT 58.820 47.619 0.00 0.00 0.00 1.98
293 2337 2.166664 ACCGAGTTGTCTTGCCTATCTC 59.833 50.000 0.00 0.00 0.00 2.75
294 2338 2.166459 CCGAGTTGTCTTGCCTATCTCA 59.834 50.000 0.00 0.00 0.00 3.27
295 2339 3.182967 CGAGTTGTCTTGCCTATCTCAC 58.817 50.000 0.00 0.00 0.00 3.51
296 2340 3.367395 CGAGTTGTCTTGCCTATCTCACA 60.367 47.826 0.00 0.00 0.00 3.58
297 2341 3.929610 GAGTTGTCTTGCCTATCTCACAC 59.070 47.826 0.00 0.00 0.00 3.82
298 2342 3.324846 AGTTGTCTTGCCTATCTCACACA 59.675 43.478 0.00 0.00 0.00 3.72
299 2343 4.065088 GTTGTCTTGCCTATCTCACACAA 58.935 43.478 0.00 0.00 0.00 3.33
300 2344 4.350368 TGTCTTGCCTATCTCACACAAA 57.650 40.909 0.00 0.00 0.00 2.83
301 2345 4.713553 TGTCTTGCCTATCTCACACAAAA 58.286 39.130 0.00 0.00 0.00 2.44
302 2346 5.316167 TGTCTTGCCTATCTCACACAAAAT 58.684 37.500 0.00 0.00 0.00 1.82
303 2347 5.769662 TGTCTTGCCTATCTCACACAAAATT 59.230 36.000 0.00 0.00 0.00 1.82
304 2348 6.088824 GTCTTGCCTATCTCACACAAAATTG 58.911 40.000 0.00 0.00 0.00 2.32
305 2349 5.769662 TCTTGCCTATCTCACACAAAATTGT 59.230 36.000 0.00 0.00 43.36 2.71
306 2350 5.627499 TGCCTATCTCACACAAAATTGTC 57.373 39.130 0.00 0.00 39.91 3.18
307 2351 5.069318 TGCCTATCTCACACAAAATTGTCA 58.931 37.500 0.00 0.00 39.91 3.58
308 2352 5.534278 TGCCTATCTCACACAAAATTGTCAA 59.466 36.000 0.00 0.00 39.91 3.18
309 2353 6.209192 TGCCTATCTCACACAAAATTGTCAAT 59.791 34.615 0.00 0.00 39.91 2.57
310 2354 7.092716 GCCTATCTCACACAAAATTGTCAATT 58.907 34.615 4.91 4.91 39.91 2.32
311 2355 7.062605 GCCTATCTCACACAAAATTGTCAATTG 59.937 37.037 11.54 0.00 39.91 2.32
312 2356 8.084073 CCTATCTCACACAAAATTGTCAATTGT 58.916 33.333 11.54 3.24 39.91 2.71
313 2357 9.467258 CTATCTCACACAAAATTGTCAATTGTT 57.533 29.630 11.54 5.90 39.91 2.83
314 2358 7.522901 TCTCACACAAAATTGTCAATTGTTG 57.477 32.000 11.54 17.10 39.91 3.33
315 2359 6.534436 TCTCACACAAAATTGTCAATTGTTGG 59.466 34.615 22.79 17.64 39.91 3.77
316 2360 5.064452 TCACACAAAATTGTCAATTGTTGGC 59.936 36.000 22.79 0.00 39.91 4.52
317 2361 4.940046 ACACAAAATTGTCAATTGTTGGCA 59.060 33.333 22.79 0.00 44.76 4.92
342 2386 9.120538 CAAGTATTGGTAGTGCTAATATTTGGT 57.879 33.333 18.00 0.00 43.94 3.67
347 2391 9.640952 ATTGGTAGTGCTAATATTTGGTAATGT 57.359 29.630 0.00 0.00 0.00 2.71
348 2392 8.671384 TGGTAGTGCTAATATTTGGTAATGTC 57.329 34.615 0.00 0.00 0.00 3.06
349 2393 8.268605 TGGTAGTGCTAATATTTGGTAATGTCA 58.731 33.333 0.00 0.00 0.00 3.58
350 2394 9.116067 GGTAGTGCTAATATTTGGTAATGTCAA 57.884 33.333 0.00 0.00 0.00 3.18
351 2395 9.931210 GTAGTGCTAATATTTGGTAATGTCAAC 57.069 33.333 0.00 0.00 0.00 3.18
352 2396 8.574251 AGTGCTAATATTTGGTAATGTCAACA 57.426 30.769 0.00 0.00 0.00 3.33
353 2397 9.189156 AGTGCTAATATTTGGTAATGTCAACAT 57.811 29.630 0.00 0.00 38.41 2.71
358 2402 8.491331 AATATTTGGTAATGTCAACATTTGGC 57.509 30.769 13.18 5.32 43.48 4.52
359 2403 5.543507 TTTGGTAATGTCAACATTTGGCT 57.456 34.783 13.18 0.00 43.48 4.75
360 2404 6.656632 TTTGGTAATGTCAACATTTGGCTA 57.343 33.333 13.18 1.48 43.48 3.93
361 2405 5.895636 TGGTAATGTCAACATTTGGCTAG 57.104 39.130 13.18 0.00 43.48 3.42
362 2406 4.157656 TGGTAATGTCAACATTTGGCTAGC 59.842 41.667 13.18 6.04 43.48 3.42
363 2407 3.874392 AATGTCAACATTTGGCTAGCC 57.126 42.857 27.71 27.71 43.48 3.93
364 2408 2.284754 TGTCAACATTTGGCTAGCCA 57.715 45.000 32.88 32.88 45.63 4.75
382 2426 3.331478 CCAAATATTGGCAGCAAACCA 57.669 42.857 0.00 0.00 45.17 3.67
390 2434 4.613925 TTGGCAGCAAACCAATATTTCA 57.386 36.364 0.00 0.00 42.23 2.69
391 2435 4.822685 TGGCAGCAAACCAATATTTCAT 57.177 36.364 0.00 0.00 33.12 2.57
392 2436 4.757594 TGGCAGCAAACCAATATTTCATC 58.242 39.130 0.00 0.00 33.12 2.92
393 2437 4.467082 TGGCAGCAAACCAATATTTCATCT 59.533 37.500 0.00 0.00 33.12 2.90
394 2438 5.655974 TGGCAGCAAACCAATATTTCATCTA 59.344 36.000 0.00 0.00 33.12 1.98
395 2439 6.183360 TGGCAGCAAACCAATATTTCATCTAG 60.183 38.462 0.00 0.00 33.12 2.43
396 2440 6.211515 GCAGCAAACCAATATTTCATCTAGG 58.788 40.000 0.00 0.00 0.00 3.02
397 2441 6.736794 GCAGCAAACCAATATTTCATCTAGGG 60.737 42.308 0.00 0.00 0.00 3.53
398 2442 6.322201 CAGCAAACCAATATTTCATCTAGGGT 59.678 38.462 0.00 0.00 0.00 4.34
399 2443 6.897413 AGCAAACCAATATTTCATCTAGGGTT 59.103 34.615 0.00 0.00 38.93 4.11
400 2444 7.068716 AGCAAACCAATATTTCATCTAGGGTTC 59.931 37.037 0.00 0.00 36.44 3.62
401 2445 7.147915 GCAAACCAATATTTCATCTAGGGTTCA 60.148 37.037 0.00 0.00 36.44 3.18
402 2446 7.881775 AACCAATATTTCATCTAGGGTTCAC 57.118 36.000 0.00 0.00 32.21 3.18
403 2447 6.969043 ACCAATATTTCATCTAGGGTTCACA 58.031 36.000 0.00 0.00 0.00 3.58
404 2448 6.828785 ACCAATATTTCATCTAGGGTTCACAC 59.171 38.462 0.00 0.00 0.00 3.82
405 2449 7.056635 CCAATATTTCATCTAGGGTTCACACT 58.943 38.462 0.00 0.00 0.00 3.55
440 2484 4.442609 CGCAACCGTTGGATGCTAATCC 62.443 54.545 13.12 0.00 46.99 3.01
462 2506 0.250038 TGGCAGTGAGCTGTCTTGTC 60.250 55.000 0.00 0.00 46.84 3.18
511 2557 2.309528 TCTAAAGATCGCATTGCCGT 57.690 45.000 2.41 0.00 0.00 5.68
527 2573 3.327626 TGCCGTGTTTGATTGTACGTAT 58.672 40.909 0.00 0.00 34.96 3.06
719 2766 0.249699 TGACTGTGACCGCAACGAAT 60.250 50.000 0.00 0.00 0.00 3.34
793 2848 4.033776 GCTGTGCTGCCCCCACTA 62.034 66.667 0.00 0.00 34.38 2.74
908 3020 2.252747 CACGCATTGCATTACCACAAG 58.747 47.619 9.69 0.00 0.00 3.16
912 3030 2.916716 GCATTGCATTACCACAAGAACG 59.083 45.455 3.15 0.00 0.00 3.95
944 3070 1.362406 GAAGCGCAGGACAAGTAGCC 61.362 60.000 11.47 0.00 0.00 3.93
947 3073 1.591703 CGCAGGACAAGTAGCCAGA 59.408 57.895 0.00 0.00 0.00 3.86
948 3074 0.737715 CGCAGGACAAGTAGCCAGAC 60.738 60.000 0.00 0.00 0.00 3.51
949 3075 0.321671 GCAGGACAAGTAGCCAGACA 59.678 55.000 0.00 0.00 0.00 3.41
950 3076 1.674221 GCAGGACAAGTAGCCAGACAG 60.674 57.143 0.00 0.00 0.00 3.51
953 3079 2.171840 GGACAAGTAGCCAGACAGAGA 58.828 52.381 0.00 0.00 0.00 3.10
955 3081 3.196685 GGACAAGTAGCCAGACAGAGAAT 59.803 47.826 0.00 0.00 0.00 2.40
956 3082 4.323104 GGACAAGTAGCCAGACAGAGAATT 60.323 45.833 0.00 0.00 0.00 2.17
960 3086 6.211584 ACAAGTAGCCAGACAGAGAATTTAGA 59.788 38.462 0.00 0.00 0.00 2.10
964 3090 3.625313 GCCAGACAGAGAATTTAGAAGCC 59.375 47.826 0.00 0.00 0.00 4.35
995 3121 2.161808 CGACGACCAAGAGACATACAGT 59.838 50.000 0.00 0.00 0.00 3.55
1473 3611 3.710722 CAGAAGCGGAGGGTGGCT 61.711 66.667 0.00 0.00 42.33 4.75
1513 3651 4.493747 CGAGGTTCTCGCCCGACC 62.494 72.222 4.36 0.00 46.75 4.79
1686 3842 0.657840 ATAGACGCGGCAAATGCTTC 59.342 50.000 17.71 0.00 41.70 3.86
1689 3845 0.387239 GACGCGGCAAATGCTTCTTT 60.387 50.000 7.34 0.00 41.70 2.52
1690 3846 0.031994 ACGCGGCAAATGCTTCTTTT 59.968 45.000 12.47 0.00 41.70 2.27
1691 3847 1.139163 CGCGGCAAATGCTTCTTTTT 58.861 45.000 0.00 0.00 41.70 1.94
1709 3865 2.629210 TTTTTGAGTGGACGCGCG 59.371 55.556 30.96 30.96 0.00 6.86
1832 4675 5.628130 AGGAAATGCACATACAGATATGCT 58.372 37.500 0.00 0.00 41.83 3.79
1856 4699 7.164171 GCTTGTCAATGTAATGTAAATACAGCG 59.836 37.037 0.00 0.00 39.92 5.18
1863 4706 0.673956 TGTAAATACAGCGCCCGCAA 60.674 50.000 15.50 0.23 44.88 4.85
1925 4769 1.002087 CTCGGTTACTGGCCTGAACTT 59.998 52.381 17.64 0.00 0.00 2.66
1926 4770 1.418637 TCGGTTACTGGCCTGAACTTT 59.581 47.619 17.64 0.00 0.00 2.66
1928 4772 3.071312 TCGGTTACTGGCCTGAACTTTAA 59.929 43.478 17.64 1.09 0.00 1.52
1929 4773 3.187842 CGGTTACTGGCCTGAACTTTAAC 59.812 47.826 17.64 12.98 0.00 2.01
1930 4774 4.395625 GGTTACTGGCCTGAACTTTAACT 58.604 43.478 17.64 0.00 0.00 2.24
1932 4776 3.141767 ACTGGCCTGAACTTTAACTCC 57.858 47.619 17.64 0.00 0.00 3.85
1933 4777 2.441750 ACTGGCCTGAACTTTAACTCCA 59.558 45.455 17.64 0.00 0.00 3.86
1934 4778 2.814336 CTGGCCTGAACTTTAACTCCAC 59.186 50.000 3.32 0.00 0.00 4.02
1936 4780 3.649023 TGGCCTGAACTTTAACTCCACTA 59.351 43.478 3.32 0.00 0.00 2.74
1938 4782 5.222048 TGGCCTGAACTTTAACTCCACTATT 60.222 40.000 3.32 0.00 0.00 1.73
1940 4784 6.539103 GGCCTGAACTTTAACTCCACTATTAG 59.461 42.308 0.00 0.00 0.00 1.73
1941 4785 7.104290 GCCTGAACTTTAACTCCACTATTAGT 58.896 38.462 0.00 0.00 0.00 2.24
1942 4786 7.064728 GCCTGAACTTTAACTCCACTATTAGTG 59.935 40.741 15.58 15.58 45.53 2.74
1963 4807 3.645687 TGCCTCATTTTTAGGTTTGCCTT 59.354 39.130 0.00 0.00 44.18 4.35
1987 4831 6.503524 TGTGCAGAAGTAATTTTCCAAGTTC 58.496 36.000 0.00 0.00 0.00 3.01
1988 4832 5.920840 GTGCAGAAGTAATTTTCCAAGTTCC 59.079 40.000 0.00 0.00 0.00 3.62
2000 4844 3.509442 TCCAAGTTCCAAGCCAATGATT 58.491 40.909 0.00 0.00 0.00 2.57
2001 4845 4.671831 TCCAAGTTCCAAGCCAATGATTA 58.328 39.130 0.00 0.00 0.00 1.75
2002 4846 4.706476 TCCAAGTTCCAAGCCAATGATTAG 59.294 41.667 0.00 0.00 0.00 1.73
2003 4847 4.142093 CCAAGTTCCAAGCCAATGATTAGG 60.142 45.833 0.00 0.00 0.00 2.69
2004 4848 4.322057 AGTTCCAAGCCAATGATTAGGT 57.678 40.909 0.00 0.00 0.00 3.08
2005 4849 4.677182 AGTTCCAAGCCAATGATTAGGTT 58.323 39.130 0.00 0.00 0.00 3.50
2006 4850 5.826643 AGTTCCAAGCCAATGATTAGGTTA 58.173 37.500 0.00 0.00 0.00 2.85
2007 4851 5.652452 AGTTCCAAGCCAATGATTAGGTTAC 59.348 40.000 0.00 0.00 0.00 2.50
2008 4852 5.186256 TCCAAGCCAATGATTAGGTTACA 57.814 39.130 0.00 0.00 0.00 2.41
2009 4853 4.947388 TCCAAGCCAATGATTAGGTTACAC 59.053 41.667 0.00 0.00 0.00 2.90
2010 4854 4.949856 CCAAGCCAATGATTAGGTTACACT 59.050 41.667 0.00 0.00 0.00 3.55
2011 4855 5.418840 CCAAGCCAATGATTAGGTTACACTT 59.581 40.000 0.00 0.00 0.00 3.16
2012 4856 6.324819 CAAGCCAATGATTAGGTTACACTTG 58.675 40.000 0.00 0.00 0.00 3.16
2013 4857 4.399303 AGCCAATGATTAGGTTACACTTGC 59.601 41.667 0.00 0.00 0.00 4.01
2014 4858 4.440112 GCCAATGATTAGGTTACACTTGCC 60.440 45.833 0.00 0.00 0.00 4.52
2015 4859 4.949856 CCAATGATTAGGTTACACTTGCCT 59.050 41.667 0.00 0.00 36.47 4.75
2016 4860 6.119536 CCAATGATTAGGTTACACTTGCCTA 58.880 40.000 0.00 0.00 34.07 3.93
2017 4861 6.601613 CCAATGATTAGGTTACACTTGCCTAA 59.398 38.462 4.97 4.97 45.46 2.69
2018 4862 7.122055 CCAATGATTAGGTTACACTTGCCTAAA 59.878 37.037 6.40 0.00 44.83 1.85
2019 4863 8.519526 CAATGATTAGGTTACACTTGCCTAAAA 58.480 33.333 6.40 0.20 44.83 1.52
2020 4864 8.644374 ATGATTAGGTTACACTTGCCTAAAAA 57.356 30.769 6.40 0.00 44.83 1.94
2097 4941 7.610580 TTTTGGGAAATGGAAGATAGTGTTT 57.389 32.000 0.00 0.00 0.00 2.83
2098 4942 6.588719 TTGGGAAATGGAAGATAGTGTTTG 57.411 37.500 0.00 0.00 0.00 2.93
2099 4943 5.886609 TGGGAAATGGAAGATAGTGTTTGA 58.113 37.500 0.00 0.00 0.00 2.69
2103 4947 8.571336 GGGAAATGGAAGATAGTGTTTGATATG 58.429 37.037 0.00 0.00 0.00 1.78
2104 4948 8.078596 GGAAATGGAAGATAGTGTTTGATATGC 58.921 37.037 0.00 0.00 0.00 3.14
2106 4950 7.741027 ATGGAAGATAGTGTTTGATATGCTG 57.259 36.000 0.00 0.00 0.00 4.41
2107 4951 6.653020 TGGAAGATAGTGTTTGATATGCTGT 58.347 36.000 0.00 0.00 0.00 4.40
2108 4952 7.112122 TGGAAGATAGTGTTTGATATGCTGTT 58.888 34.615 0.00 0.00 0.00 3.16
2109 4953 8.264347 TGGAAGATAGTGTTTGATATGCTGTTA 58.736 33.333 0.00 0.00 0.00 2.41
2118 4962 4.916983 TGATATGCTGTTATTTGTGGGC 57.083 40.909 0.00 0.00 0.00 5.36
2119 4963 4.535781 TGATATGCTGTTATTTGTGGGCT 58.464 39.130 0.00 0.00 0.00 5.19
2120 4964 4.955450 TGATATGCTGTTATTTGTGGGCTT 59.045 37.500 0.00 0.00 0.00 4.35
2122 4966 2.875296 TGCTGTTATTTGTGGGCTTCT 58.125 42.857 0.00 0.00 0.00 2.85
2123 4967 3.230134 TGCTGTTATTTGTGGGCTTCTT 58.770 40.909 0.00 0.00 0.00 2.52
2124 4968 3.255642 TGCTGTTATTTGTGGGCTTCTTC 59.744 43.478 0.00 0.00 0.00 2.87
2125 4969 3.507622 GCTGTTATTTGTGGGCTTCTTCT 59.492 43.478 0.00 0.00 0.00 2.85
2126 4970 4.021981 GCTGTTATTTGTGGGCTTCTTCTT 60.022 41.667 0.00 0.00 0.00 2.52
2127 4971 5.452078 TGTTATTTGTGGGCTTCTTCTTG 57.548 39.130 0.00 0.00 0.00 3.02
2128 4972 4.892934 TGTTATTTGTGGGCTTCTTCTTGT 59.107 37.500 0.00 0.00 0.00 3.16
2130 4974 3.799281 TTTGTGGGCTTCTTCTTGTTG 57.201 42.857 0.00 0.00 0.00 3.33
2131 4975 2.435372 TGTGGGCTTCTTCTTGTTGT 57.565 45.000 0.00 0.00 0.00 3.32
2133 4977 2.024414 GTGGGCTTCTTCTTGTTGTGT 58.976 47.619 0.00 0.00 0.00 3.72
2134 4978 2.427095 GTGGGCTTCTTCTTGTTGTGTT 59.573 45.455 0.00 0.00 0.00 3.32
2135 4979 3.630312 GTGGGCTTCTTCTTGTTGTGTTA 59.370 43.478 0.00 0.00 0.00 2.41
2137 4981 3.883489 GGGCTTCTTCTTGTTGTGTTAGT 59.117 43.478 0.00 0.00 0.00 2.24
2138 4982 4.338400 GGGCTTCTTCTTGTTGTGTTAGTT 59.662 41.667 0.00 0.00 0.00 2.24
2139 4983 5.505819 GGGCTTCTTCTTGTTGTGTTAGTTC 60.506 44.000 0.00 0.00 0.00 3.01
2140 4984 5.297029 GGCTTCTTCTTGTTGTGTTAGTTCT 59.703 40.000 0.00 0.00 0.00 3.01
2141 4985 6.482308 GGCTTCTTCTTGTTGTGTTAGTTCTA 59.518 38.462 0.00 0.00 0.00 2.10
2142 4986 7.173390 GGCTTCTTCTTGTTGTGTTAGTTCTAT 59.827 37.037 0.00 0.00 0.00 1.98
2143 4987 8.560374 GCTTCTTCTTGTTGTGTTAGTTCTATT 58.440 33.333 0.00 0.00 0.00 1.73
2145 4989 9.832445 TTCTTCTTGTTGTGTTAGTTCTATTCT 57.168 29.630 0.00 0.00 0.00 2.40
2146 4990 9.477484 TCTTCTTGTTGTGTTAGTTCTATTCTC 57.523 33.333 0.00 0.00 0.00 2.87
2147 4991 9.261180 CTTCTTGTTGTGTTAGTTCTATTCTCA 57.739 33.333 0.00 0.00 0.00 3.27
2148 4992 9.778741 TTCTTGTTGTGTTAGTTCTATTCTCAT 57.221 29.630 0.00 0.00 0.00 2.90
2149 4993 9.208022 TCTTGTTGTGTTAGTTCTATTCTCATG 57.792 33.333 0.00 0.00 0.00 3.07
2150 4994 7.905604 TGTTGTGTTAGTTCTATTCTCATGG 57.094 36.000 0.00 0.00 0.00 3.66
2151 4995 6.878923 TGTTGTGTTAGTTCTATTCTCATGGG 59.121 38.462 0.00 0.00 0.00 4.00
2152 4996 6.620877 TGTGTTAGTTCTATTCTCATGGGT 57.379 37.500 0.00 0.00 0.00 4.51
2154 4998 5.817816 GTGTTAGTTCTATTCTCATGGGTGG 59.182 44.000 0.00 0.00 0.00 4.61
2155 4999 3.567478 AGTTCTATTCTCATGGGTGGC 57.433 47.619 0.00 0.00 0.00 5.01
2156 5000 2.158900 AGTTCTATTCTCATGGGTGGCG 60.159 50.000 0.00 0.00 0.00 5.69
2157 5001 1.788229 TCTATTCTCATGGGTGGCGA 58.212 50.000 0.00 0.00 0.00 5.54
2158 5002 1.688735 TCTATTCTCATGGGTGGCGAG 59.311 52.381 0.00 0.00 0.00 5.03
2160 5004 2.615227 ATTCTCATGGGTGGCGAGGC 62.615 60.000 0.00 0.00 0.00 4.70
2174 5452 1.606601 GAGGCCTGTGTTTTCCCCC 60.607 63.158 12.00 0.00 0.00 5.40
2186 5464 2.406002 TTTCCCCCACTCCGTGCTTC 62.406 60.000 0.00 0.00 31.34 3.86
2223 5609 0.750850 ATTGCTTGATCCAGCCATGC 59.249 50.000 15.66 0.00 39.25 4.06
2230 5616 2.097036 TGATCCAGCCATGCTTCTTTG 58.903 47.619 0.00 0.00 36.40 2.77
2246 5632 2.391724 TTTGGAGCGACAGGTGGACC 62.392 60.000 0.00 0.00 0.00 4.46
2267 5653 1.128692 GAGGTTTCATTTGCTCGTCGG 59.871 52.381 0.00 0.00 0.00 4.79
2290 5676 2.069776 CCCAGTGGGCTTCTTCTCA 58.930 57.895 17.33 0.00 35.35 3.27
2291 5677 0.322008 CCCAGTGGGCTTCTTCTCAC 60.322 60.000 17.33 0.00 35.35 3.51
2299 5685 2.550208 GGGCTTCTTCTCACTTTTCCGA 60.550 50.000 0.00 0.00 0.00 4.55
2308 5694 3.581332 TCTCACTTTTCCGATAAGGGTGT 59.419 43.478 1.38 0.00 41.52 4.16
2309 5695 4.041198 TCTCACTTTTCCGATAAGGGTGTT 59.959 41.667 1.38 0.00 41.52 3.32
2310 5696 4.721132 TCACTTTTCCGATAAGGGTGTTT 58.279 39.130 1.38 0.00 41.52 2.83
2311 5697 5.867330 TCACTTTTCCGATAAGGGTGTTTA 58.133 37.500 1.38 0.00 41.52 2.01
2312 5698 6.478129 TCACTTTTCCGATAAGGGTGTTTAT 58.522 36.000 1.38 0.00 41.52 1.40
2313 5699 7.622713 TCACTTTTCCGATAAGGGTGTTTATA 58.377 34.615 1.38 0.00 41.52 0.98
2314 5700 7.550196 TCACTTTTCCGATAAGGGTGTTTATAC 59.450 37.037 1.38 0.00 41.52 1.47
2315 5701 7.551617 CACTTTTCCGATAAGGGTGTTTATACT 59.448 37.037 3.97 0.00 41.52 2.12
2316 5702 7.767659 ACTTTTCCGATAAGGGTGTTTATACTC 59.232 37.037 3.97 0.00 41.52 2.59
2317 5703 6.795144 TTCCGATAAGGGTGTTTATACTCA 57.205 37.500 0.00 0.00 41.52 3.41
2318 5704 6.795144 TCCGATAAGGGTGTTTATACTCAA 57.205 37.500 0.00 0.00 41.52 3.02
2319 5705 6.812998 TCCGATAAGGGTGTTTATACTCAAG 58.187 40.000 0.00 0.00 41.52 3.02
2320 5706 5.465724 CCGATAAGGGTGTTTATACTCAAGC 59.534 44.000 0.00 0.00 35.97 4.01
2321 5707 6.046593 CGATAAGGGTGTTTATACTCAAGCA 58.953 40.000 0.00 0.00 0.00 3.91
2322 5708 6.201044 CGATAAGGGTGTTTATACTCAAGCAG 59.799 42.308 0.00 0.00 0.00 4.24
2323 5709 5.499004 AAGGGTGTTTATACTCAAGCAGA 57.501 39.130 0.00 0.00 0.00 4.26
2333 5719 1.528129 CTCAAGCAGAGGGTGTTTCC 58.472 55.000 0.00 0.00 40.84 3.13
2334 5720 0.843309 TCAAGCAGAGGGTGTTTCCA 59.157 50.000 0.00 0.00 38.11 3.53
2335 5721 0.954452 CAAGCAGAGGGTGTTTCCAC 59.046 55.000 0.00 0.00 41.06 4.02
2336 5722 0.550914 AAGCAGAGGGTGTTTCCACA 59.449 50.000 0.00 0.00 43.71 4.17
2337 5723 0.550914 AGCAGAGGGTGTTTCCACAA 59.449 50.000 0.00 0.00 43.71 3.33
2338 5724 0.954452 GCAGAGGGTGTTTCCACAAG 59.046 55.000 0.00 0.00 43.71 3.16
2339 5725 1.750682 GCAGAGGGTGTTTCCACAAGT 60.751 52.381 0.00 0.00 43.71 3.16
2383 5777 1.138859 CAGACCGGCAATGGAGTCATA 59.861 52.381 0.00 0.00 32.44 2.15
2387 5781 3.740115 ACCGGCAATGGAGTCATATTAC 58.260 45.455 0.00 0.00 32.44 1.89
2389 5783 2.157668 CGGCAATGGAGTCATATTACGC 59.842 50.000 0.00 0.00 32.44 4.42
2438 5832 2.434884 ATCTGTCCAGCCGCAACG 60.435 61.111 0.00 0.00 0.00 4.10
2447 5842 3.024043 GCCGCAACGCAAAGTGTG 61.024 61.111 0.00 0.00 0.00 3.82
2451 5846 0.248054 CGCAACGCAAAGTGTGAAGT 60.248 50.000 0.00 0.00 0.00 3.01
2479 5874 5.880332 GCTCATACACCTTCCACAATTTCTA 59.120 40.000 0.00 0.00 0.00 2.10
2481 5876 6.774673 TCATACACCTTCCACAATTTCTACA 58.225 36.000 0.00 0.00 0.00 2.74
2495 5890 9.801714 CACAATTTCTACAAATTCTTTTCATGC 57.198 29.630 0.00 0.00 39.75 4.06
2504 5899 6.592607 ACAAATTCTTTTCATGCTGCTATTGG 59.407 34.615 0.00 0.00 0.00 3.16
2515 5910 1.203237 TGCTATTGGGCAGCTAGTCA 58.797 50.000 0.00 0.00 39.83 3.41
2524 5919 1.486211 GCAGCTAGTCACCCTCCTTA 58.514 55.000 0.00 0.00 0.00 2.69
2530 5925 5.010213 CAGCTAGTCACCCTCCTTATTACTC 59.990 48.000 0.00 0.00 0.00 2.59
2532 5927 3.655384 AGTCACCCTCCTTATTACTCCC 58.345 50.000 0.00 0.00 0.00 4.30
2533 5928 3.275228 AGTCACCCTCCTTATTACTCCCT 59.725 47.826 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.830457 TGGTTCCAAACAATCATGTCACTAA 59.170 36.000 0.00 0.00 39.40 2.24
35 36 5.549742 ACATTGGTTCCAAACAATCATGT 57.450 34.783 8.38 4.01 43.14 3.21
59 60 5.068855 TCAAACTGCTGTTTTGATGGATCAA 59.931 36.000 17.94 0.00 43.13 2.57
73 74 2.736144 AATGCCACATCAAACTGCTG 57.264 45.000 0.00 0.00 0.00 4.41
81 82 3.749226 TCACAGTGTTAATGCCACATCA 58.251 40.909 0.00 0.00 35.24 3.07
97 98 2.964123 CGCAAACGTAACAACATCACAG 59.036 45.455 0.00 0.00 33.53 3.66
99 100 2.286536 ACCGCAAACGTAACAACATCAC 60.287 45.455 0.00 0.00 37.70 3.06
101 102 2.673976 ACCGCAAACGTAACAACATC 57.326 45.000 0.00 0.00 37.70 3.06
102 103 3.303924 GGTTACCGCAAACGTAACAACAT 60.304 43.478 11.67 0.00 37.44 2.71
103 104 2.031437 GGTTACCGCAAACGTAACAACA 59.969 45.455 11.67 0.00 37.44 3.33
104 105 2.287644 AGGTTACCGCAAACGTAACAAC 59.712 45.455 11.67 0.00 37.44 3.32
105 106 2.559440 AGGTTACCGCAAACGTAACAA 58.441 42.857 11.67 0.00 37.44 2.83
107 108 2.907393 CAAGGTTACCGCAAACGTAAC 58.093 47.619 0.00 2.90 37.70 2.50
108 109 1.263752 GCAAGGTTACCGCAAACGTAA 59.736 47.619 0.00 0.00 37.70 3.18
110 111 1.096386 TGCAAGGTTACCGCAAACGT 61.096 50.000 1.54 0.00 37.70 3.99
111 112 0.029567 TTGCAAGGTTACCGCAAACG 59.970 50.000 12.95 0.00 42.34 3.60
112 113 3.949031 TTGCAAGGTTACCGCAAAC 57.051 47.368 12.95 0.00 42.34 2.93
115 116 4.096682 GGTAATTATTGCAAGGTTACCGCA 59.903 41.667 23.34 0.00 36.17 5.69
116 117 4.337274 AGGTAATTATTGCAAGGTTACCGC 59.663 41.667 27.24 15.44 45.54 5.68
117 118 5.820947 AGAGGTAATTATTGCAAGGTTACCG 59.179 40.000 27.24 0.00 45.54 4.02
118 119 7.991460 AGTAGAGGTAATTATTGCAAGGTTACC 59.009 37.037 26.88 26.88 42.80 2.85
119 120 8.827677 CAGTAGAGGTAATTATTGCAAGGTTAC 58.172 37.037 16.79 16.79 0.00 2.50
120 121 7.497909 GCAGTAGAGGTAATTATTGCAAGGTTA 59.502 37.037 4.94 1.19 34.02 2.85
123 124 5.050091 CGCAGTAGAGGTAATTATTGCAAGG 60.050 44.000 4.94 0.00 33.61 3.61
124 125 5.753438 TCGCAGTAGAGGTAATTATTGCAAG 59.247 40.000 4.94 0.00 33.61 4.01
125 126 5.666462 TCGCAGTAGAGGTAATTATTGCAA 58.334 37.500 0.00 0.00 33.61 4.08
165 2209 2.434336 AGCTGTGAGTGAGGTTGTACAA 59.566 45.455 3.59 3.59 0.00 2.41
177 2221 0.542938 TGCCCTCAGTAGCTGTGAGT 60.543 55.000 20.61 0.00 39.98 3.41
184 2228 3.214696 ACCAATTATGCCCTCAGTAGC 57.785 47.619 0.00 0.00 0.00 3.58
185 2229 4.339247 CCAAACCAATTATGCCCTCAGTAG 59.661 45.833 0.00 0.00 0.00 2.57
186 2230 4.264172 ACCAAACCAATTATGCCCTCAGTA 60.264 41.667 0.00 0.00 0.00 2.74
188 2232 3.099141 ACCAAACCAATTATGCCCTCAG 58.901 45.455 0.00 0.00 0.00 3.35
192 2236 1.406751 GGCACCAAACCAATTATGCCC 60.407 52.381 1.51 0.00 42.61 5.36
193 2237 1.277557 TGGCACCAAACCAATTATGCC 59.722 47.619 6.11 6.11 45.98 4.40
194 2238 2.758736 TGGCACCAAACCAATTATGC 57.241 45.000 0.00 0.00 33.12 3.14
195 2239 6.572167 ATTTTTGGCACCAAACCAATTATG 57.428 33.333 14.31 0.00 46.25 1.90
196 2240 6.015603 CCAATTTTTGGCACCAAACCAATTAT 60.016 34.615 14.31 0.00 46.25 1.28
197 2241 5.300286 CCAATTTTTGGCACCAAACCAATTA 59.700 36.000 14.31 0.00 46.25 1.40
198 2242 4.099113 CCAATTTTTGGCACCAAACCAATT 59.901 37.500 14.31 14.56 46.25 2.32
199 2243 3.635836 CCAATTTTTGGCACCAAACCAAT 59.364 39.130 14.31 9.77 46.25 3.16
200 2244 3.019564 CCAATTTTTGGCACCAAACCAA 58.980 40.909 14.31 7.90 45.17 3.67
201 2245 2.648059 CCAATTTTTGGCACCAAACCA 58.352 42.857 14.31 5.15 45.17 3.67
228 2272 8.481954 TCAATATTTGACGCAATGCCAAACATT 61.482 33.333 10.86 9.01 41.36 2.71
229 2273 2.522836 TTTGACGCAATGCCAAACAT 57.477 40.000 0.00 0.00 42.30 2.71
230 2274 2.522836 ATTTGACGCAATGCCAAACA 57.477 40.000 10.86 0.00 33.33 2.83
231 2275 4.624882 TCAATATTTGACGCAATGCCAAAC 59.375 37.500 10.86 0.00 34.08 2.93
232 2276 4.814147 TCAATATTTGACGCAATGCCAAA 58.186 34.783 11.00 11.00 34.08 3.28
233 2277 4.446994 TCAATATTTGACGCAATGCCAA 57.553 36.364 0.00 0.00 34.08 4.52
255 2299 6.308605 ACTCGGTAACCAACCAAGTAGTGG 62.309 50.000 0.00 0.00 44.09 4.00
256 2300 3.243975 ACTCGGTAACCAACCAAGTAGTG 60.244 47.826 0.00 0.00 44.09 2.74
257 2301 2.967887 ACTCGGTAACCAACCAAGTAGT 59.032 45.455 0.00 0.00 44.09 2.73
258 2302 3.672767 ACTCGGTAACCAACCAAGTAG 57.327 47.619 0.00 0.00 44.09 2.57
259 2303 3.134442 ACAACTCGGTAACCAACCAAGTA 59.866 43.478 0.00 0.00 45.23 2.24
264 2308 2.538512 AGACAACTCGGTAACCAACC 57.461 50.000 0.00 0.00 45.77 3.77
265 2309 2.032290 GCAAGACAACTCGGTAACCAAC 60.032 50.000 0.00 0.00 0.00 3.77
266 2310 2.215196 GCAAGACAACTCGGTAACCAA 58.785 47.619 0.00 0.00 0.00 3.67
267 2311 1.541670 GGCAAGACAACTCGGTAACCA 60.542 52.381 0.00 0.00 0.00 3.67
268 2312 1.154197 GGCAAGACAACTCGGTAACC 58.846 55.000 0.00 0.00 0.00 2.85
269 2313 2.165319 AGGCAAGACAACTCGGTAAC 57.835 50.000 0.00 0.00 0.00 2.50
270 2314 3.767673 AGATAGGCAAGACAACTCGGTAA 59.232 43.478 0.00 0.00 0.00 2.85
271 2315 3.362706 AGATAGGCAAGACAACTCGGTA 58.637 45.455 0.00 0.00 0.00 4.02
272 2316 2.166664 GAGATAGGCAAGACAACTCGGT 59.833 50.000 0.00 0.00 0.00 4.69
273 2317 2.166459 TGAGATAGGCAAGACAACTCGG 59.834 50.000 0.00 0.00 0.00 4.63
274 2318 3.182967 GTGAGATAGGCAAGACAACTCG 58.817 50.000 0.00 0.00 0.00 4.18
275 2319 3.929610 GTGTGAGATAGGCAAGACAACTC 59.070 47.826 0.00 0.00 0.00 3.01
276 2320 3.324846 TGTGTGAGATAGGCAAGACAACT 59.675 43.478 0.00 0.00 0.00 3.16
277 2321 3.664107 TGTGTGAGATAGGCAAGACAAC 58.336 45.455 0.00 0.00 0.00 3.32
278 2322 4.350368 TTGTGTGAGATAGGCAAGACAA 57.650 40.909 0.00 0.00 0.00 3.18
279 2323 4.350368 TTTGTGTGAGATAGGCAAGACA 57.650 40.909 0.00 0.00 0.00 3.41
280 2324 5.886960 ATTTTGTGTGAGATAGGCAAGAC 57.113 39.130 0.00 0.00 0.00 3.01
281 2325 5.769662 ACAATTTTGTGTGAGATAGGCAAGA 59.230 36.000 0.00 0.00 40.49 3.02
282 2326 6.017400 ACAATTTTGTGTGAGATAGGCAAG 57.983 37.500 0.00 0.00 40.49 4.01
283 2327 5.534278 TGACAATTTTGTGTGAGATAGGCAA 59.466 36.000 0.00 0.00 42.43 4.52
284 2328 5.069318 TGACAATTTTGTGTGAGATAGGCA 58.931 37.500 0.00 0.00 42.43 4.75
285 2329 5.627499 TGACAATTTTGTGTGAGATAGGC 57.373 39.130 0.00 0.00 42.43 3.93
286 2330 8.084073 ACAATTGACAATTTTGTGTGAGATAGG 58.916 33.333 13.59 0.00 42.43 2.57
287 2331 9.467258 AACAATTGACAATTTTGTGTGAGATAG 57.533 29.630 13.59 0.00 42.43 2.08
288 2332 9.247126 CAACAATTGACAATTTTGTGTGAGATA 57.753 29.630 13.59 0.00 42.43 1.98
289 2333 7.225145 CCAACAATTGACAATTTTGTGTGAGAT 59.775 33.333 13.59 3.46 42.43 2.75
290 2334 6.534436 CCAACAATTGACAATTTTGTGTGAGA 59.466 34.615 13.59 0.00 42.43 3.27
291 2335 6.707711 CCAACAATTGACAATTTTGTGTGAG 58.292 36.000 13.59 11.85 42.43 3.51
292 2336 5.064452 GCCAACAATTGACAATTTTGTGTGA 59.936 36.000 13.59 0.00 42.43 3.58
293 2337 5.163784 TGCCAACAATTGACAATTTTGTGTG 60.164 36.000 13.59 15.05 42.43 3.82
294 2338 4.940046 TGCCAACAATTGACAATTTTGTGT 59.060 33.333 13.59 12.85 42.43 3.72
295 2339 5.481200 TGCCAACAATTGACAATTTTGTG 57.519 34.783 13.59 15.36 42.43 3.33
296 2340 5.647225 ACTTGCCAACAATTGACAATTTTGT 59.353 32.000 13.59 14.11 38.57 2.83
297 2341 6.121613 ACTTGCCAACAATTGACAATTTTG 57.878 33.333 13.59 15.98 32.60 2.44
298 2342 8.344098 CAATACTTGCCAACAATTGACAATTTT 58.656 29.630 13.59 2.09 32.60 1.82
299 2343 7.041235 CCAATACTTGCCAACAATTGACAATTT 60.041 33.333 13.59 0.94 32.60 1.82
300 2344 6.427547 CCAATACTTGCCAACAATTGACAATT 59.572 34.615 13.59 7.62 32.60 2.32
301 2345 5.933463 CCAATACTTGCCAACAATTGACAAT 59.067 36.000 13.59 0.00 32.60 2.71
302 2346 5.163364 ACCAATACTTGCCAACAATTGACAA 60.163 36.000 13.59 9.62 34.61 3.18
303 2347 4.343526 ACCAATACTTGCCAACAATTGACA 59.656 37.500 13.59 1.84 34.61 3.58
304 2348 4.881920 ACCAATACTTGCCAACAATTGAC 58.118 39.130 13.59 0.00 34.61 3.18
305 2349 5.772672 ACTACCAATACTTGCCAACAATTGA 59.227 36.000 13.59 0.00 34.61 2.57
306 2350 5.863397 CACTACCAATACTTGCCAACAATTG 59.137 40.000 3.24 3.24 34.61 2.32
307 2351 5.566627 GCACTACCAATACTTGCCAACAATT 60.567 40.000 0.00 0.00 34.61 2.32
308 2352 4.082245 GCACTACCAATACTTGCCAACAAT 60.082 41.667 0.00 0.00 34.61 2.71
309 2353 3.254657 GCACTACCAATACTTGCCAACAA 59.745 43.478 0.00 0.00 0.00 2.83
310 2354 2.817258 GCACTACCAATACTTGCCAACA 59.183 45.455 0.00 0.00 0.00 3.33
311 2355 3.081804 AGCACTACCAATACTTGCCAAC 58.918 45.455 0.00 0.00 33.48 3.77
312 2356 3.433306 AGCACTACCAATACTTGCCAA 57.567 42.857 0.00 0.00 33.48 4.52
313 2357 4.561500 TTAGCACTACCAATACTTGCCA 57.438 40.909 0.00 0.00 33.48 4.92
314 2358 7.745620 AATATTAGCACTACCAATACTTGCC 57.254 36.000 0.00 0.00 33.48 4.52
315 2359 8.076178 CCAAATATTAGCACTACCAATACTTGC 58.924 37.037 0.00 0.00 0.00 4.01
316 2360 9.120538 ACCAAATATTAGCACTACCAATACTTG 57.879 33.333 0.00 0.00 0.00 3.16
321 2365 9.640952 ACATTACCAAATATTAGCACTACCAAT 57.359 29.630 0.00 0.00 0.00 3.16
322 2366 9.116067 GACATTACCAAATATTAGCACTACCAA 57.884 33.333 0.00 0.00 0.00 3.67
323 2367 8.268605 TGACATTACCAAATATTAGCACTACCA 58.731 33.333 0.00 0.00 0.00 3.25
324 2368 8.671384 TGACATTACCAAATATTAGCACTACC 57.329 34.615 0.00 0.00 0.00 3.18
325 2369 9.931210 GTTGACATTACCAAATATTAGCACTAC 57.069 33.333 0.00 0.00 0.00 2.73
326 2370 9.674068 TGTTGACATTACCAAATATTAGCACTA 57.326 29.630 0.00 0.00 0.00 2.74
327 2371 8.574251 TGTTGACATTACCAAATATTAGCACT 57.426 30.769 0.00 0.00 0.00 4.40
328 2372 9.801873 AATGTTGACATTACCAAATATTAGCAC 57.198 29.630 7.55 0.00 44.09 4.40
332 2376 9.593134 GCCAAATGTTGACATTACCAAATATTA 57.407 29.630 9.57 0.00 45.06 0.98
333 2377 8.320617 AGCCAAATGTTGACATTACCAAATATT 58.679 29.630 9.57 0.00 45.06 1.28
334 2378 7.850193 AGCCAAATGTTGACATTACCAAATAT 58.150 30.769 9.57 0.00 45.06 1.28
335 2379 7.238486 AGCCAAATGTTGACATTACCAAATA 57.762 32.000 9.57 0.00 45.06 1.40
336 2380 6.112927 AGCCAAATGTTGACATTACCAAAT 57.887 33.333 9.57 0.00 45.06 2.32
337 2381 5.543507 AGCCAAATGTTGACATTACCAAA 57.456 34.783 9.57 0.00 45.06 3.28
338 2382 5.336372 GCTAGCCAAATGTTGACATTACCAA 60.336 40.000 2.29 0.00 45.06 3.67
339 2383 4.157656 GCTAGCCAAATGTTGACATTACCA 59.842 41.667 2.29 0.00 45.06 3.25
340 2384 4.440112 GGCTAGCCAAATGTTGACATTACC 60.440 45.833 29.33 0.00 45.06 2.85
341 2385 4.157656 TGGCTAGCCAAATGTTGACATTAC 59.842 41.667 34.27 1.11 45.06 1.89
342 2386 4.339748 TGGCTAGCCAAATGTTGACATTA 58.660 39.130 34.27 5.16 45.06 1.90
344 2388 2.806434 TGGCTAGCCAAATGTTGACAT 58.194 42.857 34.27 0.00 44.12 3.06
345 2389 2.284754 TGGCTAGCCAAATGTTGACA 57.715 45.000 34.27 6.48 44.12 3.58
370 2414 4.467082 AGATGAAATATTGGTTTGCTGCCA 59.533 37.500 0.00 0.00 0.00 4.92
371 2415 5.014808 AGATGAAATATTGGTTTGCTGCC 57.985 39.130 0.00 0.00 0.00 4.85
372 2416 6.211515 CCTAGATGAAATATTGGTTTGCTGC 58.788 40.000 0.00 0.00 0.00 5.25
373 2417 6.322201 ACCCTAGATGAAATATTGGTTTGCTG 59.678 38.462 0.00 0.00 28.03 4.41
374 2418 6.435164 ACCCTAGATGAAATATTGGTTTGCT 58.565 36.000 0.00 0.00 28.03 3.91
375 2419 6.715347 ACCCTAGATGAAATATTGGTTTGC 57.285 37.500 0.00 0.00 28.03 3.68
376 2420 8.190784 GTGAACCCTAGATGAAATATTGGTTTG 58.809 37.037 4.60 0.00 33.43 2.93
377 2421 7.893302 TGTGAACCCTAGATGAAATATTGGTTT 59.107 33.333 4.60 0.00 33.43 3.27
378 2422 7.339466 GTGTGAACCCTAGATGAAATATTGGTT 59.661 37.037 3.04 3.04 35.17 3.67
379 2423 6.828785 GTGTGAACCCTAGATGAAATATTGGT 59.171 38.462 0.00 0.00 28.03 3.67
380 2424 7.056635 AGTGTGAACCCTAGATGAAATATTGG 58.943 38.462 0.00 0.00 30.01 3.16
381 2425 9.784531 ATAGTGTGAACCCTAGATGAAATATTG 57.215 33.333 0.00 0.00 0.00 1.90
383 2427 9.159254 TGATAGTGTGAACCCTAGATGAAATAT 57.841 33.333 0.00 0.00 0.00 1.28
384 2428 8.547481 TGATAGTGTGAACCCTAGATGAAATA 57.453 34.615 0.00 0.00 0.00 1.40
385 2429 7.437713 TGATAGTGTGAACCCTAGATGAAAT 57.562 36.000 0.00 0.00 0.00 2.17
386 2430 6.867519 TGATAGTGTGAACCCTAGATGAAA 57.132 37.500 0.00 0.00 0.00 2.69
387 2431 7.437713 AATGATAGTGTGAACCCTAGATGAA 57.562 36.000 0.00 0.00 0.00 2.57
388 2432 6.239036 CGAATGATAGTGTGAACCCTAGATGA 60.239 42.308 0.00 0.00 0.00 2.92
389 2433 5.923114 CGAATGATAGTGTGAACCCTAGATG 59.077 44.000 0.00 0.00 0.00 2.90
390 2434 5.598830 ACGAATGATAGTGTGAACCCTAGAT 59.401 40.000 0.00 0.00 0.00 1.98
391 2435 4.954202 ACGAATGATAGTGTGAACCCTAGA 59.046 41.667 0.00 0.00 0.00 2.43
392 2436 5.263968 ACGAATGATAGTGTGAACCCTAG 57.736 43.478 0.00 0.00 0.00 3.02
393 2437 5.421056 AGAACGAATGATAGTGTGAACCCTA 59.579 40.000 0.00 0.00 0.00 3.53
394 2438 4.223032 AGAACGAATGATAGTGTGAACCCT 59.777 41.667 0.00 0.00 0.00 4.34
395 2439 4.504858 AGAACGAATGATAGTGTGAACCC 58.495 43.478 0.00 0.00 0.00 4.11
396 2440 5.220228 CGAAGAACGAATGATAGTGTGAACC 60.220 44.000 0.00 0.00 45.77 3.62
397 2441 5.721510 GCGAAGAACGAATGATAGTGTGAAC 60.722 44.000 0.00 0.00 45.77 3.18
398 2442 4.326278 GCGAAGAACGAATGATAGTGTGAA 59.674 41.667 0.00 0.00 45.77 3.18
399 2443 3.857665 GCGAAGAACGAATGATAGTGTGA 59.142 43.478 0.00 0.00 45.77 3.58
400 2444 3.612423 TGCGAAGAACGAATGATAGTGTG 59.388 43.478 0.00 0.00 45.77 3.82
401 2445 3.845178 TGCGAAGAACGAATGATAGTGT 58.155 40.909 0.00 0.00 45.77 3.55
402 2446 4.492570 GGTTGCGAAGAACGAATGATAGTG 60.493 45.833 0.00 0.00 45.77 2.74
403 2447 3.617263 GGTTGCGAAGAACGAATGATAGT 59.383 43.478 0.00 0.00 45.77 2.12
404 2448 3.301835 CGGTTGCGAAGAACGAATGATAG 60.302 47.826 0.00 0.00 45.77 2.08
405 2449 2.601314 CGGTTGCGAAGAACGAATGATA 59.399 45.455 0.00 0.00 45.77 2.15
462 2506 6.401955 AAAACACATTCAGAAAACAAACCG 57.598 33.333 0.00 0.00 0.00 4.44
495 2541 0.881118 AACACGGCAATGCGATCTTT 59.119 45.000 0.00 0.00 0.00 2.52
500 2546 0.595588 AATCAAACACGGCAATGCGA 59.404 45.000 0.00 0.00 0.00 5.10
527 2573 6.385759 ACATGGTGAGGTACAGTCCAAATATA 59.614 38.462 0.00 0.00 30.34 0.86
751 2803 1.363807 GGAGGTTTGTTGTGCCAGC 59.636 57.895 0.00 0.00 0.00 4.85
752 2804 0.670162 CTGGAGGTTTGTTGTGCCAG 59.330 55.000 0.00 0.00 37.21 4.85
753 2805 1.391157 GCTGGAGGTTTGTTGTGCCA 61.391 55.000 0.00 0.00 0.00 4.92
754 2806 1.363807 GCTGGAGGTTTGTTGTGCC 59.636 57.895 0.00 0.00 0.00 5.01
793 2848 1.740296 GCATTGTCGTGTAGCCGGT 60.740 57.895 1.90 0.00 0.00 5.28
908 3020 0.306533 TTCTCTTGTTTGCGCCGTTC 59.693 50.000 4.18 0.00 0.00 3.95
912 3030 1.441016 CGCTTCTCTTGTTTGCGCC 60.441 57.895 4.18 0.00 40.15 6.53
944 3070 3.308323 GCGGCTTCTAAATTCTCTGTCTG 59.692 47.826 0.00 0.00 0.00 3.51
947 3073 3.003480 GTGCGGCTTCTAAATTCTCTGT 58.997 45.455 0.00 0.00 0.00 3.41
948 3074 3.002791 TGTGCGGCTTCTAAATTCTCTG 58.997 45.455 0.00 0.00 0.00 3.35
949 3075 3.003480 GTGTGCGGCTTCTAAATTCTCT 58.997 45.455 0.00 0.00 0.00 3.10
950 3076 2.742053 TGTGTGCGGCTTCTAAATTCTC 59.258 45.455 0.00 0.00 0.00 2.87
953 3079 1.196808 CGTGTGTGCGGCTTCTAAATT 59.803 47.619 0.00 0.00 0.00 1.82
955 3081 1.837538 GCGTGTGTGCGGCTTCTAAA 61.838 55.000 0.00 0.00 0.00 1.85
956 3082 2.314647 GCGTGTGTGCGGCTTCTAA 61.315 57.895 0.00 0.00 0.00 2.10
995 3121 0.888736 CACACACAGGCCCATTTCGA 60.889 55.000 0.00 0.00 0.00 3.71
1047 3185 4.097361 GGGAGAACCACCCTCGCC 62.097 72.222 0.00 0.00 43.65 5.54
1513 3651 0.312416 CTCTCGGAGATGGCGGTTAG 59.688 60.000 8.39 0.00 33.89 2.34
1707 3863 0.931662 CTATCAAGCATTTGCCGCGC 60.932 55.000 0.00 0.00 43.38 6.86
1708 3864 0.317269 CCTATCAAGCATTTGCCGCG 60.317 55.000 0.00 0.00 43.38 6.46
1709 3865 1.024271 TCCTATCAAGCATTTGCCGC 58.976 50.000 0.00 0.00 43.38 6.53
1712 3868 3.633525 TCCACATCCTATCAAGCATTTGC 59.366 43.478 0.00 0.00 42.49 3.68
1717 3873 3.200605 ACACATCCACATCCTATCAAGCA 59.799 43.478 0.00 0.00 0.00 3.91
1832 4675 6.964370 GCGCTGTATTTACATTACATTGACAA 59.036 34.615 0.00 0.00 35.36 3.18
1889 4733 2.231964 ACCGAGCATACGTACTCCAAAA 59.768 45.455 0.00 0.00 0.00 2.44
1925 4769 6.808321 ATGAGGCACTAATAGTGGAGTTAA 57.192 37.500 20.56 0.00 46.01 2.01
1926 4770 6.808321 AATGAGGCACTAATAGTGGAGTTA 57.192 37.500 20.56 0.00 46.01 2.24
1928 4772 5.700402 AAATGAGGCACTAATAGTGGAGT 57.300 39.130 20.56 0.00 46.01 3.85
1929 4773 7.227512 CCTAAAAATGAGGCACTAATAGTGGAG 59.772 40.741 20.56 0.00 46.01 3.86
1930 4774 7.054124 CCTAAAAATGAGGCACTAATAGTGGA 58.946 38.462 20.56 0.00 46.01 4.02
1933 4777 8.739972 CAAACCTAAAAATGAGGCACTAATAGT 58.260 33.333 0.00 0.00 41.55 2.12
1934 4778 7.702348 GCAAACCTAAAAATGAGGCACTAATAG 59.298 37.037 0.00 0.00 41.55 1.73
1936 4780 6.398095 GCAAACCTAAAAATGAGGCACTAAT 58.602 36.000 0.00 0.00 41.55 1.73
1938 4782 4.219725 GGCAAACCTAAAAATGAGGCACTA 59.780 41.667 0.00 0.00 41.55 2.74
1940 4784 3.325870 GGCAAACCTAAAAATGAGGCAC 58.674 45.455 0.00 0.00 37.63 5.01
1941 4785 3.676291 GGCAAACCTAAAAATGAGGCA 57.324 42.857 0.00 0.00 37.63 4.75
1963 4807 6.460953 GGAACTTGGAAAATTACTTCTGCACA 60.461 38.462 0.00 0.00 0.00 4.57
1970 4814 5.365314 TGGCTTGGAACTTGGAAAATTACTT 59.635 36.000 0.00 0.00 0.00 2.24
1987 4831 4.949856 AGTGTAACCTAATCATTGGCTTGG 59.050 41.667 0.00 0.00 37.80 3.61
1988 4832 6.324819 CAAGTGTAACCTAATCATTGGCTTG 58.675 40.000 0.00 0.00 37.80 4.01
2072 4916 7.610580 AACACTATCTTCCATTTCCCAAAAA 57.389 32.000 0.00 0.00 0.00 1.94
2077 4921 8.571336 CATATCAAACACTATCTTCCATTTCCC 58.429 37.037 0.00 0.00 0.00 3.97
2083 4927 6.653020 ACAGCATATCAAACACTATCTTCCA 58.347 36.000 0.00 0.00 0.00 3.53
2090 4934 8.458052 CCACAAATAACAGCATATCAAACACTA 58.542 33.333 0.00 0.00 0.00 2.74
2092 4936 6.531240 CCCACAAATAACAGCATATCAAACAC 59.469 38.462 0.00 0.00 0.00 3.32
2095 4939 5.421693 AGCCCACAAATAACAGCATATCAAA 59.578 36.000 0.00 0.00 0.00 2.69
2097 4941 4.535781 AGCCCACAAATAACAGCATATCA 58.464 39.130 0.00 0.00 0.00 2.15
2098 4942 5.300286 AGAAGCCCACAAATAACAGCATATC 59.700 40.000 0.00 0.00 0.00 1.63
2099 4943 5.203528 AGAAGCCCACAAATAACAGCATAT 58.796 37.500 0.00 0.00 0.00 1.78
2103 4947 3.507622 AGAAGAAGCCCACAAATAACAGC 59.492 43.478 0.00 0.00 0.00 4.40
2104 4948 5.010012 ACAAGAAGAAGCCCACAAATAACAG 59.990 40.000 0.00 0.00 0.00 3.16
2106 4950 5.453567 ACAAGAAGAAGCCCACAAATAAC 57.546 39.130 0.00 0.00 0.00 1.89
2107 4951 5.362430 ACAACAAGAAGAAGCCCACAAATAA 59.638 36.000 0.00 0.00 0.00 1.40
2108 4952 4.892934 ACAACAAGAAGAAGCCCACAAATA 59.107 37.500 0.00 0.00 0.00 1.40
2109 4953 3.706086 ACAACAAGAAGAAGCCCACAAAT 59.294 39.130 0.00 0.00 0.00 2.32
2111 4955 2.426738 CACAACAAGAAGAAGCCCACAA 59.573 45.455 0.00 0.00 0.00 3.33
2112 4956 2.023673 CACAACAAGAAGAAGCCCACA 58.976 47.619 0.00 0.00 0.00 4.17
2113 4957 2.024414 ACACAACAAGAAGAAGCCCAC 58.976 47.619 0.00 0.00 0.00 4.61
2114 4958 2.435372 ACACAACAAGAAGAAGCCCA 57.565 45.000 0.00 0.00 0.00 5.36
2115 4959 3.883489 ACTAACACAACAAGAAGAAGCCC 59.117 43.478 0.00 0.00 0.00 5.19
2119 4963 9.832445 AGAATAGAACTAACACAACAAGAAGAA 57.168 29.630 0.00 0.00 0.00 2.52
2120 4964 9.477484 GAGAATAGAACTAACACAACAAGAAGA 57.523 33.333 0.00 0.00 0.00 2.87
2122 4966 9.778741 ATGAGAATAGAACTAACACAACAAGAA 57.221 29.630 0.00 0.00 0.00 2.52
2123 4967 9.208022 CATGAGAATAGAACTAACACAACAAGA 57.792 33.333 0.00 0.00 0.00 3.02
2124 4968 8.446273 CCATGAGAATAGAACTAACACAACAAG 58.554 37.037 0.00 0.00 0.00 3.16
2125 4969 7.390440 CCCATGAGAATAGAACTAACACAACAA 59.610 37.037 0.00 0.00 0.00 2.83
2126 4970 6.878923 CCCATGAGAATAGAACTAACACAACA 59.121 38.462 0.00 0.00 0.00 3.33
2127 4971 6.879458 ACCCATGAGAATAGAACTAACACAAC 59.121 38.462 0.00 0.00 0.00 3.32
2128 4972 6.878923 CACCCATGAGAATAGAACTAACACAA 59.121 38.462 0.00 0.00 0.00 3.33
2130 4974 5.817816 CCACCCATGAGAATAGAACTAACAC 59.182 44.000 0.00 0.00 0.00 3.32
2131 4975 5.629133 GCCACCCATGAGAATAGAACTAACA 60.629 44.000 0.00 0.00 0.00 2.41
2133 4977 4.442893 CGCCACCCATGAGAATAGAACTAA 60.443 45.833 0.00 0.00 0.00 2.24
2134 4978 3.069586 CGCCACCCATGAGAATAGAACTA 59.930 47.826 0.00 0.00 0.00 2.24
2135 4979 2.158900 CGCCACCCATGAGAATAGAACT 60.159 50.000 0.00 0.00 0.00 3.01
2137 4981 2.103094 CTCGCCACCCATGAGAATAGAA 59.897 50.000 0.00 0.00 31.31 2.10
2138 4982 1.688735 CTCGCCACCCATGAGAATAGA 59.311 52.381 0.00 0.00 31.31 1.98
2139 4983 1.270518 CCTCGCCACCCATGAGAATAG 60.271 57.143 0.00 0.00 31.31 1.73
2140 4984 0.758734 CCTCGCCACCCATGAGAATA 59.241 55.000 0.00 0.00 31.31 1.75
2141 4985 1.528824 CCTCGCCACCCATGAGAAT 59.471 57.895 0.00 0.00 31.31 2.40
2142 4986 2.989639 CCTCGCCACCCATGAGAA 59.010 61.111 0.00 0.00 31.31 2.87
2143 4987 3.785859 GCCTCGCCACCCATGAGA 61.786 66.667 0.00 0.00 31.31 3.27
2154 4998 2.626780 GGGAAAACACAGGCCTCGC 61.627 63.158 0.00 0.00 0.00 5.03
2155 4999 1.971695 GGGGAAAACACAGGCCTCG 60.972 63.158 0.00 0.00 0.00 4.63
2156 5000 1.606601 GGGGGAAAACACAGGCCTC 60.607 63.158 0.00 0.00 0.00 4.70
2157 5001 2.399607 TGGGGGAAAACACAGGCCT 61.400 57.895 0.00 0.00 0.00 5.19
2158 5002 2.200092 TGGGGGAAAACACAGGCC 59.800 61.111 0.00 0.00 0.00 5.19
2160 5004 0.539669 GGAGTGGGGGAAAACACAGG 60.540 60.000 0.00 0.00 39.99 4.00
2161 5005 0.889186 CGGAGTGGGGGAAAACACAG 60.889 60.000 0.00 0.00 39.99 3.66
2162 5006 1.149627 CGGAGTGGGGGAAAACACA 59.850 57.895 0.00 0.00 39.99 3.72
2192 5578 1.473677 TCAAGCAATGCAAGGAATCCG 59.526 47.619 8.35 0.00 0.00 4.18
2223 5609 1.151668 CACCTGTCGCTCCAAAGAAG 58.848 55.000 0.00 0.00 0.00 2.85
2230 5616 4.436998 CGGTCCACCTGTCGCTCC 62.437 72.222 0.00 0.00 0.00 4.70
2267 5653 2.772515 AGAAGAAGCCCACTGGGTATAC 59.227 50.000 16.03 5.47 46.51 1.47
2290 5676 7.627311 AGTATAAACACCCTTATCGGAAAAGT 58.373 34.615 0.00 0.00 33.16 2.66
2291 5677 7.767198 TGAGTATAAACACCCTTATCGGAAAAG 59.233 37.037 0.00 0.00 33.16 2.27
2299 5685 7.195374 TCTGCTTGAGTATAAACACCCTTAT 57.805 36.000 0.00 0.00 0.00 1.73
2308 5694 5.499004 AACACCCTCTGCTTGAGTATAAA 57.501 39.130 6.56 0.00 41.11 1.40
2309 5695 5.488341 GAAACACCCTCTGCTTGAGTATAA 58.512 41.667 6.56 0.00 41.11 0.98
2310 5696 4.081087 GGAAACACCCTCTGCTTGAGTATA 60.081 45.833 6.56 0.00 41.11 1.47
2311 5697 3.307762 GGAAACACCCTCTGCTTGAGTAT 60.308 47.826 6.56 0.00 41.11 2.12
2312 5698 2.038557 GGAAACACCCTCTGCTTGAGTA 59.961 50.000 6.56 0.00 41.11 2.59
2313 5699 1.202818 GGAAACACCCTCTGCTTGAGT 60.203 52.381 6.56 0.00 41.11 3.41
2314 5700 1.202806 TGGAAACACCCTCTGCTTGAG 60.203 52.381 1.17 1.17 37.79 3.02
2315 5701 0.843309 TGGAAACACCCTCTGCTTGA 59.157 50.000 0.00 0.00 38.00 3.02
2316 5702 3.419793 TGGAAACACCCTCTGCTTG 57.580 52.632 0.00 0.00 38.00 4.01
2327 5713 2.358582 CAGTGCATGACTTGTGGAAACA 59.641 45.455 0.00 0.00 31.39 2.83
2328 5714 2.859806 GCAGTGCATGACTTGTGGAAAC 60.860 50.000 11.09 0.00 29.75 2.78
2329 5715 1.337703 GCAGTGCATGACTTGTGGAAA 59.662 47.619 11.09 0.00 29.75 3.13
2330 5716 0.953727 GCAGTGCATGACTTGTGGAA 59.046 50.000 11.09 0.00 29.75 3.53
2331 5717 1.229975 CGCAGTGCATGACTTGTGGA 61.230 55.000 16.83 0.00 29.75 4.02
2332 5718 1.208358 CGCAGTGCATGACTTGTGG 59.792 57.895 16.83 0.00 29.75 4.17
2333 5719 0.308684 AACGCAGTGCATGACTTGTG 59.691 50.000 16.83 0.00 45.00 3.33
2334 5720 0.308684 CAACGCAGTGCATGACTTGT 59.691 50.000 16.83 0.00 45.00 3.16
2335 5721 1.000233 GCAACGCAGTGCATGACTTG 61.000 55.000 16.83 8.69 45.00 3.16
2336 5722 1.283793 GCAACGCAGTGCATGACTT 59.716 52.632 16.83 0.00 45.00 3.01
2337 5723 1.446516 TTGCAACGCAGTGCATGACT 61.447 50.000 16.83 0.00 45.00 3.41
2338 5724 0.594540 TTTGCAACGCAGTGCATGAC 60.595 50.000 16.83 9.93 45.00 3.06
2339 5725 0.314618 ATTTGCAACGCAGTGCATGA 59.685 45.000 16.83 5.18 45.00 3.07
2383 5777 0.818296 AAGAGAGAGCACGGCGTAAT 59.182 50.000 14.22 3.49 0.00 1.89
2387 5781 1.226547 GAGAAGAGAGAGCACGGCG 60.227 63.158 4.80 4.80 0.00 6.46
2389 5783 0.455410 CTGGAGAAGAGAGAGCACGG 59.545 60.000 0.00 0.00 0.00 4.94
2447 5842 4.518970 TGGAAGGTGTATGAGCAAAACTTC 59.481 41.667 0.00 0.00 34.04 3.01
2451 5846 3.826524 TGTGGAAGGTGTATGAGCAAAA 58.173 40.909 0.00 0.00 0.00 2.44
2479 5874 6.592607 CCAATAGCAGCATGAAAAGAATTTGT 59.407 34.615 0.00 0.00 39.69 2.83
2481 5876 6.110707 CCCAATAGCAGCATGAAAAGAATTT 58.889 36.000 0.00 0.00 39.69 1.82
2504 5899 1.268283 AAGGAGGGTGACTAGCTGCC 61.268 60.000 0.00 0.00 0.00 4.85
2510 5905 4.485021 AGGGAGTAATAAGGAGGGTGACTA 59.515 45.833 0.00 0.00 0.00 2.59
2515 5910 2.425975 CGGAGGGAGTAATAAGGAGGGT 60.426 54.545 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.