Multiple sequence alignment - TraesCS5D01G413800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G413800 chr5D 100.000 4061 0 0 1 4061 476675056 476670996 0.000000e+00 7500.0
1 TraesCS5D01G413800 chr5D 76.837 626 117 22 3456 4061 424089316 424089933 1.090000e-85 327.0
2 TraesCS5D01G413800 chr5B 94.492 1416 39 10 792 2186 584096722 584095325 0.000000e+00 2146.0
3 TraesCS5D01G413800 chr5B 96.486 939 32 1 2952 3890 584085306 584084369 0.000000e+00 1550.0
4 TraesCS5D01G413800 chr5B 91.821 379 21 2 424 792 584106979 584106601 1.670000e-143 520.0
5 TraesCS5D01G413800 chr5B 98.535 273 3 1 2263 2535 584094840 584094569 7.890000e-132 481.0
6 TraesCS5D01G413800 chr5B 95.610 205 7 2 2533 2737 584094335 584094133 1.090000e-85 327.0
7 TraesCS5D01G413800 chr5B 96.216 185 6 1 2759 2943 584094054 584093871 6.600000e-78 302.0
8 TraesCS5D01G413800 chr5B 84.300 293 33 9 162 443 584107508 584107218 1.440000e-69 274.0
9 TraesCS5D01G413800 chr5B 82.879 257 40 4 3805 4060 602953683 602953936 1.140000e-55 228.0
10 TraesCS5D01G413800 chr7A 85.912 1157 131 23 987 2135 687953113 687954245 0.000000e+00 1205.0
11 TraesCS5D01G413800 chr7A 83.632 1173 143 29 975 2140 690532232 690533362 0.000000e+00 1057.0
12 TraesCS5D01G413800 chr7A 82.486 1239 150 33 914 2136 682892380 682891193 0.000000e+00 1024.0
13 TraesCS5D01G413800 chr7A 79.441 715 115 25 3372 4061 80165000 80165707 1.020000e-130 477.0
14 TraesCS5D01G413800 chr7A 77.491 813 135 34 2263 3065 682891110 682890336 1.040000e-120 444.0
15 TraesCS5D01G413800 chr7A 76.733 851 133 43 2265 3096 687954319 687955123 8.120000e-112 414.0
16 TraesCS5D01G413800 chr7D 85.885 1169 118 30 987 2135 594986778 594987919 0.000000e+00 1201.0
17 TraesCS5D01G413800 chr7D 85.030 1169 138 23 987 2136 591806090 591804940 0.000000e+00 1155.0
18 TraesCS5D01G413800 chr7D 87.919 836 88 6 970 1800 598253149 598252322 0.000000e+00 972.0
19 TraesCS5D01G413800 chr7D 77.712 839 121 50 2252 3067 594987981 594988776 1.720000e-123 453.0
20 TraesCS5D01G413800 chr7D 77.546 815 128 33 2263 3064 598251861 598251089 1.340000e-119 440.0
21 TraesCS5D01G413800 chr7D 77.101 821 141 33 2263 3065 591804863 591804072 8.060000e-117 431.0
22 TraesCS5D01G413800 chr7B 86.442 1099 122 20 1048 2135 666685361 666684279 0.000000e+00 1179.0
23 TraesCS5D01G413800 chr7B 87.081 836 95 6 970 1800 677115635 677114808 0.000000e+00 933.0
24 TraesCS5D01G413800 chr7B 77.187 846 123 38 2245 3069 666684218 666683422 2.900000e-116 429.0
25 TraesCS5D01G413800 chr7B 81.231 325 41 11 2604 2927 677157680 677157375 1.130000e-60 244.0
26 TraesCS5D01G413800 chr6A 79.494 712 118 22 3372 4061 97601769 97601064 7.890000e-132 481.0
27 TraesCS5D01G413800 chr3A 80.538 483 67 18 3372 3831 690436827 690437305 3.000000e-91 346.0
28 TraesCS5D01G413800 chr3A 83.784 259 37 4 3805 4061 713422658 713422913 1.460000e-59 241.0
29 TraesCS5D01G413800 chr1B 76.393 610 116 21 3472 4061 662689317 662689918 1.830000e-78 303.0
30 TraesCS5D01G413800 chr6D 78.602 472 77 21 3370 3825 458586042 458585579 1.430000e-74 291.0
31 TraesCS5D01G413800 chr4B 73.895 724 145 31 3365 4061 558600646 558601352 2.420000e-62 250.0
32 TraesCS5D01G413800 chr1D 83.398 259 36 6 3805 4060 479824098 479823844 2.440000e-57 233.0
33 TraesCS5D01G413800 chr6B 82.692 260 39 5 3804 4061 703669512 703669767 4.080000e-55 226.0
34 TraesCS5D01G413800 chr6B 81.685 273 44 5 3791 4061 703677162 703677430 5.280000e-54 222.0
35 TraesCS5D01G413800 chr2A 91.275 149 12 1 1 148 11647039 11646891 6.880000e-48 202.0
36 TraesCS5D01G413800 chr3D 89.933 149 14 1 1 148 423320802 423320950 1.490000e-44 191.0
37 TraesCS5D01G413800 chr2B 77.352 287 55 9 3456 3734 518596508 518596792 1.170000e-35 161.0
38 TraesCS5D01G413800 chr3B 76.786 168 21 17 3374 3529 709786892 709787053 1.210000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G413800 chr5D 476670996 476675056 4060 True 7500.0 7500 100.00000 1 4061 1 chr5D.!!$R1 4060
1 TraesCS5D01G413800 chr5D 424089316 424089933 617 False 327.0 327 76.83700 3456 4061 1 chr5D.!!$F1 605
2 TraesCS5D01G413800 chr5B 584084369 584085306 937 True 1550.0 1550 96.48600 2952 3890 1 chr5B.!!$R1 938
3 TraesCS5D01G413800 chr5B 584093871 584096722 2851 True 814.0 2146 96.21325 792 2943 4 chr5B.!!$R2 2151
4 TraesCS5D01G413800 chr5B 584106601 584107508 907 True 397.0 520 88.06050 162 792 2 chr5B.!!$R3 630
5 TraesCS5D01G413800 chr7A 690532232 690533362 1130 False 1057.0 1057 83.63200 975 2140 1 chr7A.!!$F2 1165
6 TraesCS5D01G413800 chr7A 687953113 687955123 2010 False 809.5 1205 81.32250 987 3096 2 chr7A.!!$F3 2109
7 TraesCS5D01G413800 chr7A 682890336 682892380 2044 True 734.0 1024 79.98850 914 3065 2 chr7A.!!$R1 2151
8 TraesCS5D01G413800 chr7A 80165000 80165707 707 False 477.0 477 79.44100 3372 4061 1 chr7A.!!$F1 689
9 TraesCS5D01G413800 chr7D 594986778 594988776 1998 False 827.0 1201 81.79850 987 3067 2 chr7D.!!$F1 2080
10 TraesCS5D01G413800 chr7D 591804072 591806090 2018 True 793.0 1155 81.06550 987 3065 2 chr7D.!!$R1 2078
11 TraesCS5D01G413800 chr7D 598251089 598253149 2060 True 706.0 972 82.73250 970 3064 2 chr7D.!!$R2 2094
12 TraesCS5D01G413800 chr7B 677114808 677115635 827 True 933.0 933 87.08100 970 1800 1 chr7B.!!$R1 830
13 TraesCS5D01G413800 chr7B 666683422 666685361 1939 True 804.0 1179 81.81450 1048 3069 2 chr7B.!!$R3 2021
14 TraesCS5D01G413800 chr6A 97601064 97601769 705 True 481.0 481 79.49400 3372 4061 1 chr6A.!!$R1 689
15 TraesCS5D01G413800 chr1B 662689317 662689918 601 False 303.0 303 76.39300 3472 4061 1 chr1B.!!$F1 589
16 TraesCS5D01G413800 chr4B 558600646 558601352 706 False 250.0 250 73.89500 3365 4061 1 chr4B.!!$F1 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
692 703 0.031994 GTGGTTGGCAAGTCGCATTT 59.968 50.0 0.00 0.0 45.17 2.32 F
761 772 0.102844 TGATCAGTCGCATCATCGCA 59.897 50.0 0.00 0.0 0.00 5.10 F
2197 2357 0.039618 TGTGGAATGCTTTCTCCCCC 59.960 55.0 11.68 0.0 32.16 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2191 2351 0.475475 TCAGCATGCTATTGGGGGAG 59.525 55.000 22.19 4.58 34.76 4.30 R
2238 2406 1.138069 TGGATATGTATATGCGGCCGG 59.862 52.381 29.38 8.95 34.28 6.13 R
3896 5164 2.110990 CGCCGATGCAAACATGTTATG 58.889 47.619 12.39 12.94 36.35 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.518068 GCAACATAGCCCCGCCAC 61.518 66.667 0.00 0.00 0.00 5.01
21 22 2.828549 CAACATAGCCCCGCCACC 60.829 66.667 0.00 0.00 0.00 4.61
22 23 4.483243 AACATAGCCCCGCCACCG 62.483 66.667 0.00 0.00 0.00 4.94
53 54 4.162690 GGGATTCTCCTGCGGCGT 62.163 66.667 9.37 0.00 36.57 5.68
54 55 2.586357 GGATTCTCCTGCGGCGTC 60.586 66.667 9.37 0.91 32.53 5.19
55 56 2.586357 GATTCTCCTGCGGCGTCC 60.586 66.667 9.37 0.00 0.00 4.79
56 57 3.077556 ATTCTCCTGCGGCGTCCT 61.078 61.111 9.37 0.00 0.00 3.85
57 58 2.962697 GATTCTCCTGCGGCGTCCTC 62.963 65.000 9.37 0.00 0.00 3.71
78 79 3.291383 CGGCGGCAGGGAAACAAA 61.291 61.111 10.53 0.00 0.00 2.83
79 80 2.635443 CGGCGGCAGGGAAACAAAT 61.635 57.895 10.53 0.00 0.00 2.32
80 81 1.215382 GGCGGCAGGGAAACAAATC 59.785 57.895 3.07 0.00 0.00 2.17
81 82 1.250840 GGCGGCAGGGAAACAAATCT 61.251 55.000 3.07 0.00 0.00 2.40
82 83 0.109132 GCGGCAGGGAAACAAATCTG 60.109 55.000 0.00 0.00 0.00 2.90
83 84 1.533625 CGGCAGGGAAACAAATCTGA 58.466 50.000 0.00 0.00 0.00 3.27
84 85 1.470098 CGGCAGGGAAACAAATCTGAG 59.530 52.381 0.00 0.00 0.00 3.35
85 86 2.795329 GGCAGGGAAACAAATCTGAGA 58.205 47.619 0.00 0.00 0.00 3.27
86 87 3.359950 GGCAGGGAAACAAATCTGAGAT 58.640 45.455 0.00 0.00 0.00 2.75
87 88 3.129988 GGCAGGGAAACAAATCTGAGATG 59.870 47.826 0.00 0.00 0.00 2.90
88 89 4.012374 GCAGGGAAACAAATCTGAGATGA 58.988 43.478 0.00 0.00 0.00 2.92
89 90 4.096081 GCAGGGAAACAAATCTGAGATGAG 59.904 45.833 0.00 0.00 0.00 2.90
90 91 4.639310 CAGGGAAACAAATCTGAGATGAGG 59.361 45.833 0.00 0.00 0.00 3.86
91 92 4.537688 AGGGAAACAAATCTGAGATGAGGA 59.462 41.667 0.00 0.00 0.00 3.71
92 93 4.880696 GGGAAACAAATCTGAGATGAGGAG 59.119 45.833 0.00 0.00 0.00 3.69
93 94 4.880696 GGAAACAAATCTGAGATGAGGAGG 59.119 45.833 0.00 0.00 0.00 4.30
94 95 3.557228 ACAAATCTGAGATGAGGAGGC 57.443 47.619 0.00 0.00 0.00 4.70
95 96 2.158986 ACAAATCTGAGATGAGGAGGCG 60.159 50.000 0.00 0.00 0.00 5.52
96 97 0.392336 AATCTGAGATGAGGAGGCGC 59.608 55.000 0.00 0.00 0.00 6.53
97 98 0.469705 ATCTGAGATGAGGAGGCGCT 60.470 55.000 7.64 0.00 0.00 5.92
98 99 1.067749 CTGAGATGAGGAGGCGCTG 59.932 63.158 7.64 0.00 0.00 5.18
99 100 2.366480 CTGAGATGAGGAGGCGCTGG 62.366 65.000 7.64 0.00 0.00 4.85
100 101 3.160047 AGATGAGGAGGCGCTGGG 61.160 66.667 7.64 0.00 0.00 4.45
101 102 3.157252 GATGAGGAGGCGCTGGGA 61.157 66.667 7.64 0.00 0.00 4.37
102 103 3.160047 ATGAGGAGGCGCTGGGAG 61.160 66.667 7.64 0.00 0.00 4.30
105 106 4.488911 AGGAGGCGCTGGGAGGAT 62.489 66.667 7.64 0.00 0.00 3.24
106 107 4.247380 GGAGGCGCTGGGAGGATG 62.247 72.222 7.64 0.00 0.00 3.51
107 108 3.157252 GAGGCGCTGGGAGGATGA 61.157 66.667 7.64 0.00 0.00 2.92
108 109 2.688666 AGGCGCTGGGAGGATGAA 60.689 61.111 7.64 0.00 0.00 2.57
109 110 2.203126 GGCGCTGGGAGGATGAAG 60.203 66.667 7.64 0.00 0.00 3.02
110 111 2.203126 GCGCTGGGAGGATGAAGG 60.203 66.667 0.00 0.00 0.00 3.46
111 112 2.507944 CGCTGGGAGGATGAAGGG 59.492 66.667 0.00 0.00 0.00 3.95
112 113 2.066393 CGCTGGGAGGATGAAGGGA 61.066 63.158 0.00 0.00 0.00 4.20
113 114 1.626356 CGCTGGGAGGATGAAGGGAA 61.626 60.000 0.00 0.00 0.00 3.97
114 115 0.106967 GCTGGGAGGATGAAGGGAAC 60.107 60.000 0.00 0.00 0.00 3.62
115 116 0.179000 CTGGGAGGATGAAGGGAACG 59.821 60.000 0.00 0.00 0.00 3.95
116 117 1.153147 GGGAGGATGAAGGGAACGC 60.153 63.158 0.00 0.00 0.00 4.84
117 118 1.153147 GGAGGATGAAGGGAACGCC 60.153 63.158 0.00 0.00 0.00 5.68
118 119 1.602237 GAGGATGAAGGGAACGCCA 59.398 57.895 0.00 0.00 35.15 5.69
119 120 0.744771 GAGGATGAAGGGAACGCCAC 60.745 60.000 0.00 0.00 35.15 5.01
120 121 1.749258 GGATGAAGGGAACGCCACC 60.749 63.158 0.00 0.00 35.15 4.61
152 153 4.790861 GGACGACGCGGGGACTTC 62.791 72.222 12.47 0.00 0.00 3.01
153 154 3.745803 GACGACGCGGGGACTTCT 61.746 66.667 12.47 0.00 0.00 2.85
154 155 2.360350 ACGACGCGGGGACTTCTA 60.360 61.111 12.47 0.00 0.00 2.10
155 156 1.722636 GACGACGCGGGGACTTCTAT 61.723 60.000 12.47 0.00 0.00 1.98
156 157 1.318158 ACGACGCGGGGACTTCTATT 61.318 55.000 12.47 0.00 0.00 1.73
157 158 0.870307 CGACGCGGGGACTTCTATTG 60.870 60.000 12.47 0.00 0.00 1.90
158 159 0.175073 GACGCGGGGACTTCTATTGT 59.825 55.000 12.47 0.00 0.00 2.71
159 160 0.108329 ACGCGGGGACTTCTATTGTG 60.108 55.000 12.47 0.00 0.00 3.33
160 161 0.174845 CGCGGGGACTTCTATTGTGA 59.825 55.000 0.00 0.00 0.00 3.58
180 181 3.523157 TGAATGTGGAAGGGAATAGAGCA 59.477 43.478 0.00 0.00 0.00 4.26
205 208 4.284746 AGACAGAGAAGACACTAAAAGGGG 59.715 45.833 0.00 0.00 0.00 4.79
206 209 4.232091 ACAGAGAAGACACTAAAAGGGGA 58.768 43.478 0.00 0.00 0.00 4.81
207 210 4.846940 ACAGAGAAGACACTAAAAGGGGAT 59.153 41.667 0.00 0.00 0.00 3.85
228 231 1.640917 GAGTCACCACCCTAGTCCAA 58.359 55.000 0.00 0.00 0.00 3.53
236 239 2.172717 CCACCCTAGTCCAACCCATTAG 59.827 54.545 0.00 0.00 0.00 1.73
237 240 1.844497 ACCCTAGTCCAACCCATTAGC 59.156 52.381 0.00 0.00 0.00 3.09
241 244 4.020128 CCCTAGTCCAACCCATTAGCTATC 60.020 50.000 0.00 0.00 0.00 2.08
246 249 3.648067 TCCAACCCATTAGCTATCAGAGG 59.352 47.826 0.00 0.00 0.00 3.69
262 265 0.753262 GAGGCGTAGTGGATGATGGT 59.247 55.000 0.00 0.00 0.00 3.55
268 271 2.565841 GTAGTGGATGATGGTGAAGCC 58.434 52.381 0.00 0.00 37.90 4.35
269 272 0.107508 AGTGGATGATGGTGAAGCCG 60.108 55.000 0.00 0.00 41.21 5.52
271 274 0.178767 TGGATGATGGTGAAGCCGAG 59.821 55.000 0.00 0.00 41.21 4.63
273 276 1.134401 GGATGATGGTGAAGCCGAGAA 60.134 52.381 0.00 0.00 41.21 2.87
284 287 3.250762 TGAAGCCGAGAAGACAACAATTG 59.749 43.478 3.24 3.24 0.00 2.32
321 324 8.134895 ACTTCAATTTCAGTTTTAATCGCTTCA 58.865 29.630 0.00 0.00 0.00 3.02
324 327 9.474920 TCAATTTCAGTTTTAATCGCTTCATTT 57.525 25.926 0.00 0.00 0.00 2.32
335 338 3.567530 TCGCTTCATTTGCTCAATGTTG 58.432 40.909 8.50 5.16 42.79 3.33
338 341 3.122948 GCTTCATTTGCTCAATGTTGCAG 59.877 43.478 15.98 8.58 42.79 4.41
339 342 3.306917 TCATTTGCTCAATGTTGCAGG 57.693 42.857 8.50 0.80 42.79 4.85
345 348 3.156293 TGCTCAATGTTGCAGGTACAAT 58.844 40.909 0.00 0.00 34.84 2.71
347 350 4.764308 TGCTCAATGTTGCAGGTACAATTA 59.236 37.500 0.00 0.00 34.84 1.40
353 356 6.995511 ATGTTGCAGGTACAATTATTACGT 57.004 33.333 0.00 0.00 0.00 3.57
354 357 6.804770 TGTTGCAGGTACAATTATTACGTT 57.195 33.333 0.00 0.00 0.00 3.99
377 385 9.723299 CGTTAGAGATAAACTTTACTTTTGACG 57.277 33.333 0.00 0.00 0.00 4.35
389 397 7.972277 ACTTTACTTTTGACGAATAGCGATAGA 59.028 33.333 0.00 0.00 44.57 1.98
399 407 8.996271 TGACGAATAGCGATAGAACTAATCTAA 58.004 33.333 0.00 0.00 42.76 2.10
421 432 9.162764 TCTAAATCTATGTTTTGCCTTGTACTC 57.837 33.333 0.00 0.00 0.00 2.59
440 451 2.649831 CAAGCCTCTTGCATGGTGT 58.350 52.632 0.00 0.00 44.83 4.16
442 453 2.372264 CAAGCCTCTTGCATGGTGTAT 58.628 47.619 0.00 0.00 44.83 2.29
443 454 2.756760 CAAGCCTCTTGCATGGTGTATT 59.243 45.455 0.00 0.00 44.83 1.89
444 455 2.648059 AGCCTCTTGCATGGTGTATTC 58.352 47.619 0.00 0.00 44.83 1.75
445 456 2.240667 AGCCTCTTGCATGGTGTATTCT 59.759 45.455 0.00 0.00 44.83 2.40
446 457 3.019564 GCCTCTTGCATGGTGTATTCTT 58.980 45.455 0.00 0.00 40.77 2.52
447 458 3.445096 GCCTCTTGCATGGTGTATTCTTT 59.555 43.478 0.00 0.00 40.77 2.52
448 459 4.676196 GCCTCTTGCATGGTGTATTCTTTG 60.676 45.833 0.00 0.00 40.77 2.77
449 460 4.460382 CCTCTTGCATGGTGTATTCTTTGT 59.540 41.667 0.00 0.00 0.00 2.83
450 461 5.647658 CCTCTTGCATGGTGTATTCTTTGTA 59.352 40.000 0.00 0.00 0.00 2.41
451 462 6.319658 CCTCTTGCATGGTGTATTCTTTGTAT 59.680 38.462 0.00 0.00 0.00 2.29
452 463 7.498900 CCTCTTGCATGGTGTATTCTTTGTATA 59.501 37.037 0.00 0.00 0.00 1.47
453 464 8.208718 TCTTGCATGGTGTATTCTTTGTATAC 57.791 34.615 0.00 0.00 0.00 1.47
454 465 6.935741 TGCATGGTGTATTCTTTGTATACC 57.064 37.500 0.00 0.00 34.85 2.73
455 466 5.825679 TGCATGGTGTATTCTTTGTATACCC 59.174 40.000 0.00 0.00 33.75 3.69
456 467 6.062095 GCATGGTGTATTCTTTGTATACCCT 58.938 40.000 0.00 0.00 33.75 4.34
457 468 7.147461 TGCATGGTGTATTCTTTGTATACCCTA 60.147 37.037 0.00 0.00 33.75 3.53
458 469 7.717875 GCATGGTGTATTCTTTGTATACCCTAA 59.282 37.037 0.00 0.00 33.75 2.69
459 470 9.052759 CATGGTGTATTCTTTGTATACCCTAAC 57.947 37.037 0.00 0.00 33.75 2.34
460 471 7.267128 TGGTGTATTCTTTGTATACCCTAACG 58.733 38.462 0.00 0.00 33.75 3.18
461 472 6.703165 GGTGTATTCTTTGTATACCCTAACGG 59.297 42.308 0.00 0.00 37.81 4.44
472 483 2.292866 CCTAACGGGGGTCACATCA 58.707 57.895 0.00 0.00 0.00 3.07
473 484 0.616371 CCTAACGGGGGTCACATCAA 59.384 55.000 0.00 0.00 0.00 2.57
474 485 1.211949 CCTAACGGGGGTCACATCAAT 59.788 52.381 0.00 0.00 0.00 2.57
475 486 2.436542 CCTAACGGGGGTCACATCAATA 59.563 50.000 0.00 0.00 0.00 1.90
476 487 2.413310 AACGGGGGTCACATCAATAC 57.587 50.000 0.00 0.00 0.00 1.89
477 488 1.281419 ACGGGGGTCACATCAATACA 58.719 50.000 0.00 0.00 0.00 2.29
478 489 1.065709 ACGGGGGTCACATCAATACAC 60.066 52.381 0.00 0.00 0.00 2.90
479 490 1.745827 CGGGGGTCACATCAATACACC 60.746 57.143 0.00 0.00 35.86 4.16
480 491 1.283613 GGGGGTCACATCAATACACCA 59.716 52.381 0.00 0.00 38.52 4.17
481 492 2.291282 GGGGGTCACATCAATACACCAA 60.291 50.000 0.00 0.00 38.52 3.67
482 493 3.016736 GGGGTCACATCAATACACCAAG 58.983 50.000 0.00 0.00 36.65 3.61
483 494 3.016736 GGGTCACATCAATACACCAAGG 58.983 50.000 0.00 0.00 0.00 3.61
484 495 3.308117 GGGTCACATCAATACACCAAGGA 60.308 47.826 0.00 0.00 0.00 3.36
485 496 4.526970 GGTCACATCAATACACCAAGGAT 58.473 43.478 0.00 0.00 0.00 3.24
486 497 4.949856 GGTCACATCAATACACCAAGGATT 59.050 41.667 0.00 0.00 0.00 3.01
487 498 5.066505 GGTCACATCAATACACCAAGGATTC 59.933 44.000 0.00 0.00 0.00 2.52
488 499 5.882557 GTCACATCAATACACCAAGGATTCT 59.117 40.000 0.00 0.00 0.00 2.40
489 500 7.047891 GTCACATCAATACACCAAGGATTCTA 58.952 38.462 0.00 0.00 0.00 2.10
490 501 7.716998 GTCACATCAATACACCAAGGATTCTAT 59.283 37.037 0.00 0.00 0.00 1.98
491 502 8.933653 TCACATCAATACACCAAGGATTCTATA 58.066 33.333 0.00 0.00 0.00 1.31
492 503 9.212641 CACATCAATACACCAAGGATTCTATAG 57.787 37.037 0.00 0.00 0.00 1.31
493 504 8.938883 ACATCAATACACCAAGGATTCTATAGT 58.061 33.333 0.00 0.00 0.00 2.12
494 505 9.784531 CATCAATACACCAAGGATTCTATAGTT 57.215 33.333 0.00 0.00 0.00 2.24
496 507 9.832445 TCAATACACCAAGGATTCTATAGTTTC 57.168 33.333 0.00 0.00 0.00 2.78
497 508 9.838339 CAATACACCAAGGATTCTATAGTTTCT 57.162 33.333 0.00 0.00 0.00 2.52
544 555 3.763671 AAAAAGGTGCGCTCCTGG 58.236 55.556 30.20 0.00 37.93 4.45
545 556 1.903404 AAAAAGGTGCGCTCCTGGG 60.903 57.895 30.20 0.00 37.93 4.45
546 557 2.351924 AAAAAGGTGCGCTCCTGGGA 62.352 55.000 30.20 0.00 37.93 4.37
547 558 2.351924 AAAAGGTGCGCTCCTGGGAA 62.352 55.000 30.20 0.00 37.93 3.97
548 559 2.351924 AAAGGTGCGCTCCTGGGAAA 62.352 55.000 30.20 0.00 37.93 3.13
549 560 2.282180 GGTGCGCTCCTGGGAAAA 60.282 61.111 20.97 0.00 0.00 2.29
550 561 2.335712 GGTGCGCTCCTGGGAAAAG 61.336 63.158 20.97 0.00 0.00 2.27
551 562 1.302511 GTGCGCTCCTGGGAAAAGA 60.303 57.895 9.73 0.00 0.00 2.52
552 563 0.678048 GTGCGCTCCTGGGAAAAGAT 60.678 55.000 9.73 0.00 0.00 2.40
553 564 0.392998 TGCGCTCCTGGGAAAAGATC 60.393 55.000 9.73 0.00 0.00 2.75
554 565 0.392998 GCGCTCCTGGGAAAAGATCA 60.393 55.000 0.00 0.00 0.00 2.92
555 566 1.950484 GCGCTCCTGGGAAAAGATCAA 60.950 52.381 0.00 0.00 0.00 2.57
556 567 2.436417 CGCTCCTGGGAAAAGATCAAA 58.564 47.619 0.00 0.00 0.00 2.69
557 568 2.162408 CGCTCCTGGGAAAAGATCAAAC 59.838 50.000 0.00 0.00 0.00 2.93
558 569 3.425659 GCTCCTGGGAAAAGATCAAACT 58.574 45.455 0.00 0.00 0.00 2.66
559 570 4.589908 GCTCCTGGGAAAAGATCAAACTA 58.410 43.478 0.00 0.00 0.00 2.24
560 571 4.396478 GCTCCTGGGAAAAGATCAAACTAC 59.604 45.833 0.00 0.00 0.00 2.73
561 572 5.804771 GCTCCTGGGAAAAGATCAAACTACT 60.805 44.000 0.00 0.00 0.00 2.57
562 573 6.576442 GCTCCTGGGAAAAGATCAAACTACTA 60.576 42.308 0.00 0.00 0.00 1.82
563 574 7.510675 TCCTGGGAAAAGATCAAACTACTAT 57.489 36.000 0.00 0.00 0.00 2.12
564 575 7.338710 TCCTGGGAAAAGATCAAACTACTATG 58.661 38.462 0.00 0.00 0.00 2.23
565 576 7.182026 TCCTGGGAAAAGATCAAACTACTATGA 59.818 37.037 0.00 0.00 0.00 2.15
566 577 7.497249 CCTGGGAAAAGATCAAACTACTATGAG 59.503 40.741 0.00 0.00 0.00 2.90
567 578 7.338710 TGGGAAAAGATCAAACTACTATGAGG 58.661 38.462 0.00 0.00 0.00 3.86
568 579 7.037586 TGGGAAAAGATCAAACTACTATGAGGT 60.038 37.037 0.00 0.00 0.00 3.85
569 580 7.281100 GGGAAAAGATCAAACTACTATGAGGTG 59.719 40.741 0.00 0.00 0.00 4.00
570 581 7.201652 GGAAAAGATCAAACTACTATGAGGTGC 60.202 40.741 0.00 0.00 0.00 5.01
571 582 6.552445 AAGATCAAACTACTATGAGGTGCT 57.448 37.500 0.00 0.00 0.00 4.40
572 583 6.552445 AGATCAAACTACTATGAGGTGCTT 57.448 37.500 0.00 0.00 0.00 3.91
573 584 6.951971 AGATCAAACTACTATGAGGTGCTTT 58.048 36.000 0.00 0.00 0.00 3.51
574 585 7.398024 AGATCAAACTACTATGAGGTGCTTTT 58.602 34.615 0.00 0.00 0.00 2.27
575 586 6.801539 TCAAACTACTATGAGGTGCTTTTG 57.198 37.500 0.00 0.00 0.00 2.44
576 587 5.705441 TCAAACTACTATGAGGTGCTTTTGG 59.295 40.000 0.00 0.00 0.00 3.28
577 588 5.499004 AACTACTATGAGGTGCTTTTGGA 57.501 39.130 0.00 0.00 0.00 3.53
578 589 5.499004 ACTACTATGAGGTGCTTTTGGAA 57.501 39.130 0.00 0.00 0.00 3.53
579 590 5.491982 ACTACTATGAGGTGCTTTTGGAAG 58.508 41.667 0.00 0.00 35.92 3.46
592 603 4.755411 CTTTTGGAAGCATCCTAGTACGA 58.245 43.478 9.78 0.00 46.70 3.43
593 604 4.811969 TTTGGAAGCATCCTAGTACGAA 57.188 40.909 9.78 0.00 46.70 3.85
594 605 3.795623 TGGAAGCATCCTAGTACGAAC 57.204 47.619 9.78 0.00 46.70 3.95
595 606 3.093814 TGGAAGCATCCTAGTACGAACA 58.906 45.455 9.78 0.00 46.70 3.18
596 607 3.704566 TGGAAGCATCCTAGTACGAACAT 59.295 43.478 9.78 0.00 46.70 2.71
597 608 4.161565 TGGAAGCATCCTAGTACGAACATT 59.838 41.667 9.78 0.00 46.70 2.71
598 609 4.745620 GGAAGCATCCTAGTACGAACATTC 59.254 45.833 0.00 0.00 42.93 2.67
599 610 5.339008 AAGCATCCTAGTACGAACATTCA 57.661 39.130 0.00 0.00 0.00 2.57
600 611 4.683832 AGCATCCTAGTACGAACATTCAC 58.316 43.478 0.00 0.00 0.00 3.18
601 612 3.802685 GCATCCTAGTACGAACATTCACC 59.197 47.826 0.00 0.00 0.00 4.02
602 613 4.679639 GCATCCTAGTACGAACATTCACCA 60.680 45.833 0.00 0.00 0.00 4.17
603 614 4.445452 TCCTAGTACGAACATTCACCAC 57.555 45.455 0.00 0.00 0.00 4.16
604 615 4.084287 TCCTAGTACGAACATTCACCACT 58.916 43.478 0.00 0.00 0.00 4.00
605 616 5.255687 TCCTAGTACGAACATTCACCACTA 58.744 41.667 0.00 0.00 0.00 2.74
606 617 5.124457 TCCTAGTACGAACATTCACCACTAC 59.876 44.000 0.00 0.00 0.00 2.73
607 618 3.829948 AGTACGAACATTCACCACTACG 58.170 45.455 0.00 0.00 0.00 3.51
608 619 2.806608 ACGAACATTCACCACTACGT 57.193 45.000 0.00 0.00 0.00 3.57
609 620 2.669364 ACGAACATTCACCACTACGTC 58.331 47.619 0.00 0.00 0.00 4.34
610 621 2.034939 ACGAACATTCACCACTACGTCA 59.965 45.455 0.00 0.00 0.00 4.35
611 622 3.054166 CGAACATTCACCACTACGTCAA 58.946 45.455 0.00 0.00 0.00 3.18
612 623 3.491639 CGAACATTCACCACTACGTCAAA 59.508 43.478 0.00 0.00 0.00 2.69
613 624 4.376008 CGAACATTCACCACTACGTCAAAG 60.376 45.833 0.00 0.00 0.00 2.77
614 625 4.330944 ACATTCACCACTACGTCAAAGA 57.669 40.909 0.00 0.00 0.00 2.52
615 626 4.307432 ACATTCACCACTACGTCAAAGAG 58.693 43.478 0.00 0.00 0.00 2.85
616 627 3.380479 TTCACCACTACGTCAAAGAGG 57.620 47.619 0.00 0.00 0.00 3.69
617 628 2.589720 TCACCACTACGTCAAAGAGGA 58.410 47.619 7.22 0.00 0.00 3.71
618 629 2.557056 TCACCACTACGTCAAAGAGGAG 59.443 50.000 7.22 0.25 0.00 3.69
619 630 1.893801 ACCACTACGTCAAAGAGGAGG 59.106 52.381 7.22 1.81 0.00 4.30
620 631 1.204941 CCACTACGTCAAAGAGGAGGG 59.795 57.143 0.00 0.00 0.00 4.30
621 632 1.204941 CACTACGTCAAAGAGGAGGGG 59.795 57.143 0.00 0.00 0.00 4.79
622 633 0.175989 CTACGTCAAAGAGGAGGGGC 59.824 60.000 0.00 0.00 0.00 5.80
623 634 1.601419 TACGTCAAAGAGGAGGGGCG 61.601 60.000 0.00 0.00 0.00 6.13
624 635 2.269241 GTCAAAGAGGAGGGGCGG 59.731 66.667 0.00 0.00 0.00 6.13
625 636 3.717294 TCAAAGAGGAGGGGCGGC 61.717 66.667 0.00 0.00 0.00 6.53
626 637 4.803908 CAAAGAGGAGGGGCGGCC 62.804 72.222 22.00 22.00 0.00 6.13
629 640 3.714078 AAGAGGAGGGGCGGCCATA 62.714 63.158 30.95 0.00 0.00 2.74
630 641 3.168528 GAGGAGGGGCGGCCATAA 61.169 66.667 30.95 0.00 0.00 1.90
631 642 3.171388 AGGAGGGGCGGCCATAAG 61.171 66.667 30.95 0.00 0.00 1.73
632 643 3.489513 GGAGGGGCGGCCATAAGT 61.490 66.667 30.95 8.11 0.00 2.24
633 644 2.595655 GAGGGGCGGCCATAAGTT 59.404 61.111 30.95 7.21 0.00 2.66
634 645 1.823899 GAGGGGCGGCCATAAGTTG 60.824 63.158 30.95 0.00 0.00 3.16
635 646 2.265467 GAGGGGCGGCCATAAGTTGA 62.265 60.000 30.95 0.00 0.00 3.18
636 647 1.823899 GGGGCGGCCATAAGTTGAG 60.824 63.158 30.95 0.00 0.00 3.02
637 648 1.077716 GGGCGGCCATAAGTTGAGT 60.078 57.895 25.33 0.00 0.00 3.41
638 649 0.679960 GGGCGGCCATAAGTTGAGTT 60.680 55.000 25.33 0.00 0.00 3.01
639 650 0.451783 GGCGGCCATAAGTTGAGTTG 59.548 55.000 15.62 0.00 0.00 3.16
640 651 0.179163 GCGGCCATAAGTTGAGTTGC 60.179 55.000 2.24 0.00 0.00 4.17
641 652 1.453155 CGGCCATAAGTTGAGTTGCT 58.547 50.000 2.24 0.00 0.00 3.91
642 653 1.812571 CGGCCATAAGTTGAGTTGCTT 59.187 47.619 2.24 0.00 0.00 3.91
643 654 2.228822 CGGCCATAAGTTGAGTTGCTTT 59.771 45.455 2.24 0.00 0.00 3.51
644 655 3.438781 CGGCCATAAGTTGAGTTGCTTTA 59.561 43.478 2.24 0.00 0.00 1.85
645 656 4.083003 CGGCCATAAGTTGAGTTGCTTTAA 60.083 41.667 2.24 0.00 0.00 1.52
646 657 5.393027 CGGCCATAAGTTGAGTTGCTTTAAT 60.393 40.000 2.24 0.00 0.00 1.40
647 658 6.398095 GGCCATAAGTTGAGTTGCTTTAATT 58.602 36.000 0.00 0.00 0.00 1.40
648 659 7.543756 GGCCATAAGTTGAGTTGCTTTAATTA 58.456 34.615 0.00 0.00 0.00 1.40
649 660 7.702348 GGCCATAAGTTGAGTTGCTTTAATTAG 59.298 37.037 0.00 0.00 0.00 1.73
650 661 8.244113 GCCATAAGTTGAGTTGCTTTAATTAGT 58.756 33.333 0.00 0.00 0.00 2.24
655 666 9.683069 AAGTTGAGTTGCTTTAATTAGTTGATG 57.317 29.630 0.00 0.00 0.00 3.07
656 667 7.809806 AGTTGAGTTGCTTTAATTAGTTGATGC 59.190 33.333 0.00 0.00 0.00 3.91
657 668 7.213216 TGAGTTGCTTTAATTAGTTGATGCA 57.787 32.000 0.00 0.00 33.92 3.96
658 669 7.307694 TGAGTTGCTTTAATTAGTTGATGCAG 58.692 34.615 0.00 0.00 36.08 4.41
659 670 6.095377 AGTTGCTTTAATTAGTTGATGCAGC 58.905 36.000 0.00 0.00 36.08 5.25
660 671 4.997565 TGCTTTAATTAGTTGATGCAGCC 58.002 39.130 0.00 0.00 31.83 4.85
661 672 4.037690 GCTTTAATTAGTTGATGCAGCCG 58.962 43.478 0.00 0.00 0.00 5.52
662 673 4.201910 GCTTTAATTAGTTGATGCAGCCGA 60.202 41.667 0.00 0.00 0.00 5.54
663 674 5.676079 GCTTTAATTAGTTGATGCAGCCGAA 60.676 40.000 0.00 0.00 0.00 4.30
664 675 6.449635 TTTAATTAGTTGATGCAGCCGAAT 57.550 33.333 0.00 0.00 0.00 3.34
665 676 3.976793 ATTAGTTGATGCAGCCGAATG 57.023 42.857 0.00 0.00 0.00 2.67
666 677 1.016627 TAGTTGATGCAGCCGAATGC 58.983 50.000 0.00 5.01 46.68 3.56
667 678 1.226773 GTTGATGCAGCCGAATGCC 60.227 57.895 0.00 0.00 45.91 4.40
668 679 1.678300 TTGATGCAGCCGAATGCCA 60.678 52.632 0.00 0.00 45.91 4.92
669 680 1.249469 TTGATGCAGCCGAATGCCAA 61.249 50.000 0.00 4.86 45.91 4.52
670 681 1.249469 TGATGCAGCCGAATGCCAAA 61.249 50.000 0.00 0.00 45.91 3.28
671 682 0.526954 GATGCAGCCGAATGCCAAAG 60.527 55.000 8.98 0.00 45.91 2.77
672 683 1.252904 ATGCAGCCGAATGCCAAAGT 61.253 50.000 8.98 0.00 45.91 2.66
673 684 1.444895 GCAGCCGAATGCCAAAGTG 60.445 57.895 0.78 0.00 42.71 3.16
674 685 1.959085 CAGCCGAATGCCAAAGTGT 59.041 52.632 0.00 0.00 42.71 3.55
675 686 0.387622 CAGCCGAATGCCAAAGTGTG 60.388 55.000 0.00 0.00 42.71 3.82
684 695 3.665544 CCAAAGTGTGGTTGGCAAG 57.334 52.632 0.00 0.00 43.20 4.01
685 696 0.823460 CCAAAGTGTGGTTGGCAAGT 59.177 50.000 0.00 0.00 43.20 3.16
686 697 1.202405 CCAAAGTGTGGTTGGCAAGTC 60.202 52.381 0.00 0.00 43.20 3.01
687 698 0.738389 AAAGTGTGGTTGGCAAGTCG 59.262 50.000 0.00 0.00 0.00 4.18
688 699 1.724582 AAGTGTGGTTGGCAAGTCGC 61.725 55.000 0.00 3.57 41.28 5.19
689 700 2.124529 TGTGGTTGGCAAGTCGCA 60.125 55.556 0.00 6.41 45.17 5.10
690 701 1.528076 TGTGGTTGGCAAGTCGCAT 60.528 52.632 0.00 0.00 45.17 4.73
691 702 1.106351 TGTGGTTGGCAAGTCGCATT 61.106 50.000 0.00 0.00 45.17 3.56
692 703 0.031994 GTGGTTGGCAAGTCGCATTT 59.968 50.000 0.00 0.00 45.17 2.32
693 704 0.313672 TGGTTGGCAAGTCGCATTTC 59.686 50.000 0.00 0.00 45.17 2.17
694 705 0.313672 GGTTGGCAAGTCGCATTTCA 59.686 50.000 0.00 0.00 45.17 2.69
695 706 1.067635 GGTTGGCAAGTCGCATTTCAT 60.068 47.619 0.00 0.00 45.17 2.57
696 707 2.163412 GGTTGGCAAGTCGCATTTCATA 59.837 45.455 0.00 0.00 45.17 2.15
697 708 3.181487 GGTTGGCAAGTCGCATTTCATAT 60.181 43.478 0.00 0.00 45.17 1.78
698 709 4.423732 GTTGGCAAGTCGCATTTCATATT 58.576 39.130 0.00 0.00 45.17 1.28
699 710 4.031418 TGGCAAGTCGCATTTCATATTG 57.969 40.909 0.00 0.00 45.17 1.90
700 711 3.443329 TGGCAAGTCGCATTTCATATTGT 59.557 39.130 0.00 0.00 45.17 2.71
701 712 4.037690 GGCAAGTCGCATTTCATATTGTC 58.962 43.478 0.00 0.00 45.17 3.18
702 713 4.201950 GGCAAGTCGCATTTCATATTGTCT 60.202 41.667 0.00 0.00 45.17 3.41
703 714 4.731961 GCAAGTCGCATTTCATATTGTCTG 59.268 41.667 0.00 0.00 41.79 3.51
704 715 5.674569 GCAAGTCGCATTTCATATTGTCTGT 60.675 40.000 0.00 0.00 41.79 3.41
705 716 6.317088 CAAGTCGCATTTCATATTGTCTGTT 58.683 36.000 0.00 0.00 0.00 3.16
706 717 5.872635 AGTCGCATTTCATATTGTCTGTTG 58.127 37.500 0.00 0.00 0.00 3.33
707 718 4.496895 GTCGCATTTCATATTGTCTGTTGC 59.503 41.667 0.00 0.00 0.00 4.17
708 719 4.395854 TCGCATTTCATATTGTCTGTTGCT 59.604 37.500 0.00 0.00 0.00 3.91
709 720 4.497966 CGCATTTCATATTGTCTGTTGCTG 59.502 41.667 0.00 0.00 0.00 4.41
710 721 5.404946 GCATTTCATATTGTCTGTTGCTGT 58.595 37.500 0.00 0.00 0.00 4.40
711 722 5.865552 GCATTTCATATTGTCTGTTGCTGTT 59.134 36.000 0.00 0.00 0.00 3.16
712 723 6.366877 GCATTTCATATTGTCTGTTGCTGTTT 59.633 34.615 0.00 0.00 0.00 2.83
713 724 7.620600 GCATTTCATATTGTCTGTTGCTGTTTG 60.621 37.037 0.00 0.00 0.00 2.93
714 725 5.375417 TCATATTGTCTGTTGCTGTTTGG 57.625 39.130 0.00 0.00 0.00 3.28
715 726 4.218200 TCATATTGTCTGTTGCTGTTTGGG 59.782 41.667 0.00 0.00 0.00 4.12
716 727 0.459489 TTGTCTGTTGCTGTTTGGGC 59.541 50.000 0.00 0.00 0.00 5.36
717 728 0.395586 TGTCTGTTGCTGTTTGGGCT 60.396 50.000 0.00 0.00 0.00 5.19
718 729 1.133945 TGTCTGTTGCTGTTTGGGCTA 60.134 47.619 0.00 0.00 0.00 3.93
719 730 1.266989 GTCTGTTGCTGTTTGGGCTAC 59.733 52.381 0.00 0.00 36.35 3.58
720 731 1.142870 TCTGTTGCTGTTTGGGCTACT 59.857 47.619 0.00 0.00 36.65 2.57
721 732 2.370519 TCTGTTGCTGTTTGGGCTACTA 59.629 45.455 0.00 0.00 36.65 1.82
722 733 2.744202 CTGTTGCTGTTTGGGCTACTAG 59.256 50.000 0.00 0.00 36.65 2.57
723 734 1.468914 GTTGCTGTTTGGGCTACTAGC 59.531 52.381 0.00 0.00 41.46 3.42
724 735 0.690192 TGCTGTTTGGGCTACTAGCA 59.310 50.000 10.27 0.00 44.75 3.49
725 736 1.339055 TGCTGTTTGGGCTACTAGCAG 60.339 52.381 10.27 0.00 44.75 4.24
726 737 1.339151 GCTGTTTGGGCTACTAGCAGT 60.339 52.381 10.27 0.00 44.75 4.40
727 738 2.350522 CTGTTTGGGCTACTAGCAGTG 58.649 52.381 10.27 0.00 44.75 3.66
728 739 1.087501 GTTTGGGCTACTAGCAGTGC 58.912 55.000 7.13 7.13 44.75 4.40
729 740 0.984230 TTTGGGCTACTAGCAGTGCT 59.016 50.000 23.44 23.44 44.75 4.40
730 741 0.537188 TTGGGCTACTAGCAGTGCTC 59.463 55.000 23.64 6.55 44.75 4.26
731 742 1.066587 GGGCTACTAGCAGTGCTCG 59.933 63.158 23.64 18.66 44.75 5.03
732 743 1.384989 GGGCTACTAGCAGTGCTCGA 61.385 60.000 23.64 3.75 44.75 4.04
733 744 0.671251 GGCTACTAGCAGTGCTCGAT 59.329 55.000 23.64 10.89 44.75 3.59
734 745 1.067821 GGCTACTAGCAGTGCTCGATT 59.932 52.381 23.64 6.91 44.75 3.34
735 746 2.482142 GGCTACTAGCAGTGCTCGATTT 60.482 50.000 23.64 1.93 44.75 2.17
736 747 3.243434 GGCTACTAGCAGTGCTCGATTTA 60.243 47.826 23.64 1.13 44.75 1.40
737 748 3.731717 GCTACTAGCAGTGCTCGATTTAC 59.268 47.826 23.64 2.76 41.89 2.01
738 749 4.498345 GCTACTAGCAGTGCTCGATTTACT 60.498 45.833 23.64 0.35 41.89 2.24
739 750 5.277876 GCTACTAGCAGTGCTCGATTTACTA 60.278 44.000 23.64 0.00 41.89 1.82
740 751 4.922719 ACTAGCAGTGCTCGATTTACTAC 58.077 43.478 23.64 0.00 40.44 2.73
741 752 4.641094 ACTAGCAGTGCTCGATTTACTACT 59.359 41.667 23.64 0.00 40.44 2.57
742 753 4.457834 AGCAGTGCTCGATTTACTACTT 57.542 40.909 13.14 0.00 30.62 2.24
743 754 4.177026 AGCAGTGCTCGATTTACTACTTG 58.823 43.478 13.14 0.00 30.62 3.16
744 755 4.082190 AGCAGTGCTCGATTTACTACTTGA 60.082 41.667 13.14 0.00 30.62 3.02
745 756 4.806247 GCAGTGCTCGATTTACTACTTGAT 59.194 41.667 8.18 0.00 0.00 2.57
746 757 5.051374 GCAGTGCTCGATTTACTACTTGATC 60.051 44.000 8.18 0.00 0.00 2.92
747 758 6.036470 CAGTGCTCGATTTACTACTTGATCA 58.964 40.000 0.00 0.00 0.00 2.92
748 759 6.198029 CAGTGCTCGATTTACTACTTGATCAG 59.802 42.308 0.00 0.00 0.00 2.90
749 760 6.037098 GTGCTCGATTTACTACTTGATCAGT 58.963 40.000 0.00 0.00 39.87 3.41
750 761 6.197468 GTGCTCGATTTACTACTTGATCAGTC 59.803 42.308 0.00 0.00 36.88 3.51
751 762 5.396947 GCTCGATTTACTACTTGATCAGTCG 59.603 44.000 0.00 0.00 36.88 4.18
752 763 5.271625 TCGATTTACTACTTGATCAGTCGC 58.728 41.667 0.00 0.00 36.88 5.19
753 764 5.034797 CGATTTACTACTTGATCAGTCGCA 58.965 41.667 0.00 0.00 36.88 5.10
754 765 5.687730 CGATTTACTACTTGATCAGTCGCAT 59.312 40.000 0.00 0.00 36.88 4.73
755 766 6.129326 CGATTTACTACTTGATCAGTCGCATC 60.129 42.308 0.00 0.00 36.88 3.91
756 767 5.576447 TTACTACTTGATCAGTCGCATCA 57.424 39.130 0.00 0.00 36.88 3.07
757 768 4.662468 ACTACTTGATCAGTCGCATCAT 57.338 40.909 0.00 0.00 36.88 2.45
758 769 4.615949 ACTACTTGATCAGTCGCATCATC 58.384 43.478 0.00 0.00 36.88 2.92
759 770 2.467838 ACTTGATCAGTCGCATCATCG 58.532 47.619 0.00 0.00 30.26 3.84
760 771 1.191868 CTTGATCAGTCGCATCATCGC 59.808 52.381 0.00 0.00 30.26 4.58
761 772 0.102844 TGATCAGTCGCATCATCGCA 59.897 50.000 0.00 0.00 0.00 5.10
762 773 0.506080 GATCAGTCGCATCATCGCAC 59.494 55.000 0.00 0.00 0.00 5.34
763 774 1.211181 ATCAGTCGCATCATCGCACG 61.211 55.000 0.00 0.00 0.00 5.34
764 775 2.583319 AGTCGCATCATCGCACGG 60.583 61.111 0.00 0.00 0.00 4.94
765 776 2.885644 GTCGCATCATCGCACGGT 60.886 61.111 0.00 0.00 0.00 4.83
766 777 2.582226 TCGCATCATCGCACGGTC 60.582 61.111 0.00 0.00 0.00 4.79
767 778 3.976375 CGCATCATCGCACGGTCG 61.976 66.667 0.00 0.00 0.00 4.79
768 779 2.885644 GCATCATCGCACGGTCGT 60.886 61.111 0.00 0.00 0.00 4.34
769 780 2.860628 GCATCATCGCACGGTCGTC 61.861 63.158 0.00 0.00 0.00 4.20
770 781 2.104331 ATCATCGCACGGTCGTCC 59.896 61.111 0.00 0.00 0.00 4.79
771 782 2.706834 ATCATCGCACGGTCGTCCA 61.707 57.895 0.00 0.00 0.00 4.02
772 783 2.220615 ATCATCGCACGGTCGTCCAA 62.221 55.000 0.00 0.00 0.00 3.53
773 784 2.431942 ATCGCACGGTCGTCCAAC 60.432 61.111 0.00 0.00 0.00 3.77
774 785 3.927163 ATCGCACGGTCGTCCAACC 62.927 63.158 0.00 0.00 35.86 3.77
775 786 4.953868 CGCACGGTCGTCCAACCA 62.954 66.667 0.00 0.00 39.43 3.67
776 787 2.589442 GCACGGTCGTCCAACCAA 60.589 61.111 0.00 0.00 39.43 3.67
777 788 1.964373 GCACGGTCGTCCAACCAAT 60.964 57.895 0.00 0.00 39.43 3.16
778 789 1.512156 GCACGGTCGTCCAACCAATT 61.512 55.000 0.00 0.00 39.43 2.32
779 790 0.948678 CACGGTCGTCCAACCAATTT 59.051 50.000 0.00 0.00 39.43 1.82
780 791 1.335496 CACGGTCGTCCAACCAATTTT 59.665 47.619 0.00 0.00 39.43 1.82
781 792 2.548904 CACGGTCGTCCAACCAATTTTA 59.451 45.455 0.00 0.00 39.43 1.52
782 793 3.003482 CACGGTCGTCCAACCAATTTTAA 59.997 43.478 0.00 0.00 39.43 1.52
783 794 3.003585 ACGGTCGTCCAACCAATTTTAAC 59.996 43.478 0.00 0.00 39.43 2.01
784 795 3.251487 CGGTCGTCCAACCAATTTTAACT 59.749 43.478 0.00 0.00 39.43 2.24
785 796 4.542735 GGTCGTCCAACCAATTTTAACTG 58.457 43.478 0.00 0.00 39.27 3.16
786 797 4.276431 GGTCGTCCAACCAATTTTAACTGA 59.724 41.667 0.00 0.00 39.27 3.41
787 798 5.449304 GTCGTCCAACCAATTTTAACTGAG 58.551 41.667 0.00 0.00 0.00 3.35
788 799 5.237779 GTCGTCCAACCAATTTTAACTGAGA 59.762 40.000 0.00 0.00 0.00 3.27
789 800 5.468746 TCGTCCAACCAATTTTAACTGAGAG 59.531 40.000 0.00 0.00 0.00 3.20
790 801 5.334879 CGTCCAACCAATTTTAACTGAGAGG 60.335 44.000 0.00 0.00 0.00 3.69
864 875 3.479127 TTGGCGGCCACGGTTAACT 62.479 57.895 23.78 0.00 41.36 2.24
866 877 2.357760 GCGGCCACGGTTAACTGA 60.358 61.111 21.29 0.00 41.36 3.41
892 903 0.182537 CCAAACCACCACTGGACTGA 59.817 55.000 0.71 0.00 40.55 3.41
957 979 2.832129 TCCTCACGAATTTACTCCAGCT 59.168 45.455 0.00 0.00 0.00 4.24
1045 1070 3.842923 CTCTGCTCGTGGCCGGAT 61.843 66.667 5.05 0.00 40.92 4.18
1170 1201 1.740296 GTCCGTGATGTTCGTGGGG 60.740 63.158 0.00 0.00 0.00 4.96
1876 2000 7.062848 GGTTTCACTAATGAATTGTTTTTGCG 58.937 34.615 0.00 0.00 44.36 4.85
1891 2015 0.665835 TTGCGCCTTTTCGAATGTGT 59.334 45.000 4.18 0.00 0.00 3.72
2000 2136 3.550820 TGGTAATATCCTTTGCACGCAT 58.449 40.909 0.00 0.00 0.00 4.73
2002 2138 3.315191 GGTAATATCCTTTGCACGCATGT 59.685 43.478 0.00 0.00 0.00 3.21
2054 2208 3.896648 TTCAATCTTTCCAAGTCGTGC 57.103 42.857 0.00 0.00 0.00 5.34
2069 2223 8.128582 TCCAAGTCGTGCATTAATTATTGAATC 58.871 33.333 10.77 1.13 0.00 2.52
2145 2299 2.429610 AGCCATAAGGTGTCGTATTCGT 59.570 45.455 0.00 0.00 36.38 3.85
2156 2310 5.114572 GGTGTCGTATTCGTATCGTATTGTG 59.885 44.000 0.00 0.00 38.33 3.33
2189 2349 5.426504 TCACAAACAAAATGTGGAATGCTT 58.573 33.333 6.80 0.00 46.37 3.91
2191 2351 6.036953 TCACAAACAAAATGTGGAATGCTTTC 59.963 34.615 3.77 3.77 46.37 2.62
2193 2353 6.258507 ACAAACAAAATGTGGAATGCTTTCTC 59.741 34.615 11.68 6.69 32.16 2.87
2194 2354 4.886579 ACAAAATGTGGAATGCTTTCTCC 58.113 39.130 11.68 0.00 32.16 3.71
2195 2355 4.248058 CAAAATGTGGAATGCTTTCTCCC 58.752 43.478 11.68 0.00 32.16 4.30
2197 2357 0.039618 TGTGGAATGCTTTCTCCCCC 59.960 55.000 11.68 0.00 32.16 5.40
2198 2358 0.039618 GTGGAATGCTTTCTCCCCCA 59.960 55.000 11.68 0.00 32.16 4.96
2201 2361 2.584965 TGGAATGCTTTCTCCCCCAATA 59.415 45.455 11.68 0.00 32.16 1.90
2202 2362 3.225940 GGAATGCTTTCTCCCCCAATAG 58.774 50.000 11.68 0.00 32.16 1.73
2203 2363 2.371658 ATGCTTTCTCCCCCAATAGC 57.628 50.000 0.00 0.00 0.00 2.97
2257 2425 1.865865 CCGGCCGCATATACATATCC 58.134 55.000 22.85 0.00 0.00 2.59
2259 2427 2.419436 CCGGCCGCATATACATATCCAA 60.419 50.000 22.85 0.00 0.00 3.53
2288 2887 2.066262 AGTACACGCGTTTCCAATGAG 58.934 47.619 10.22 0.00 0.00 2.90
2535 3134 1.457823 CGGGCCGGCATACTACTACA 61.458 60.000 30.85 0.00 0.00 2.74
2536 3135 0.754472 GGGCCGGCATACTACTACAA 59.246 55.000 30.85 0.00 0.00 2.41
2537 3136 1.270147 GGGCCGGCATACTACTACAAG 60.270 57.143 30.85 0.00 0.00 3.16
2538 3137 1.684983 GGCCGGCATACTACTACAAGA 59.315 52.381 30.85 0.00 0.00 3.02
2539 3138 2.299297 GGCCGGCATACTACTACAAGAT 59.701 50.000 30.85 0.00 0.00 2.40
2542 3141 5.510179 GGCCGGCATACTACTACAAGATTAA 60.510 44.000 30.85 0.00 0.00 1.40
2543 3142 5.404667 GCCGGCATACTACTACAAGATTAAC 59.595 44.000 24.80 0.00 0.00 2.01
2622 3457 1.089920 CAGGTGTGCTAACTGGATGC 58.910 55.000 0.00 0.00 0.00 3.91
2655 3490 3.788766 GGCGCGCGTGTCAATCTT 61.789 61.111 32.35 0.00 0.00 2.40
2742 3645 5.392380 CGGGATGGTATGTACGTATAAGTCC 60.392 48.000 0.00 4.59 0.00 3.85
2746 3649 7.609532 GGATGGTATGTACGTATAAGTCCTACT 59.390 40.741 0.00 0.00 0.00 2.57
2747 3650 9.658799 GATGGTATGTACGTATAAGTCCTACTA 57.341 37.037 0.00 0.00 0.00 1.82
2748 3651 8.833231 TGGTATGTACGTATAAGTCCTACTAC 57.167 38.462 0.00 0.00 0.00 2.73
2749 3652 8.428852 TGGTATGTACGTATAAGTCCTACTACA 58.571 37.037 0.00 0.00 0.00 2.74
2750 3653 8.930760 GGTATGTACGTATAAGTCCTACTACAG 58.069 40.741 0.00 0.00 0.00 2.74
2751 3654 6.851222 TGTACGTATAAGTCCTACTACAGC 57.149 41.667 0.00 0.00 0.00 4.40
2752 3655 6.348498 TGTACGTATAAGTCCTACTACAGCA 58.652 40.000 0.00 0.00 0.00 4.41
2753 3656 6.994496 TGTACGTATAAGTCCTACTACAGCAT 59.006 38.462 0.00 0.00 0.00 3.79
2754 3657 6.956202 ACGTATAAGTCCTACTACAGCATT 57.044 37.500 0.00 0.00 0.00 3.56
2821 3745 0.827507 ACCCCAATTGTTGCGCTTCT 60.828 50.000 9.73 0.00 0.00 2.85
2822 3746 0.388907 CCCCAATTGTTGCGCTTCTG 60.389 55.000 9.73 0.00 0.00 3.02
2823 3747 1.010419 CCCAATTGTTGCGCTTCTGC 61.010 55.000 9.73 0.00 0.00 4.26
2824 3748 0.038892 CCAATTGTTGCGCTTCTGCT 60.039 50.000 9.73 0.00 36.97 4.24
2825 3749 1.603678 CCAATTGTTGCGCTTCTGCTT 60.604 47.619 9.73 0.00 36.97 3.91
2826 3750 1.717645 CAATTGTTGCGCTTCTGCTTC 59.282 47.619 9.73 0.00 36.97 3.86
2827 3751 0.242017 ATTGTTGCGCTTCTGCTTCC 59.758 50.000 9.73 0.00 36.97 3.46
2828 3752 1.100463 TTGTTGCGCTTCTGCTTCCA 61.100 50.000 9.73 0.00 36.97 3.53
3110 4240 5.508825 GCATGTTGTGGTCTGAATGGTTAAA 60.509 40.000 0.00 0.00 0.00 1.52
3147 4277 6.367969 GCTCTCACGTTAATTCCTAGAAAACA 59.632 38.462 0.00 0.00 0.00 2.83
3152 4282 5.471116 ACGTTAATTCCTAGAAAACACACCC 59.529 40.000 0.00 0.00 0.00 4.61
3156 4286 6.800072 AATTCCTAGAAAACACACCCAAAA 57.200 33.333 0.00 0.00 0.00 2.44
3193 4323 3.198409 TGGACCAATGATCGAATCTGG 57.802 47.619 0.00 0.00 0.00 3.86
3251 4381 7.277760 CGTATGAGACATGGTTTTTCTATGTGA 59.722 37.037 0.00 0.00 45.81 3.58
3486 4620 8.770010 TTGAAAAATACTCCTCCAAAAACCTA 57.230 30.769 0.00 0.00 0.00 3.08
3534 4673 7.985184 ACATGATACGCCATAGAAACTCTTTTA 59.015 33.333 0.00 0.00 0.00 1.52
3716 4972 1.826385 AACTCCCCTTGAATCTTGCG 58.174 50.000 0.00 0.00 0.00 4.85
3891 5157 8.500753 TTCGGAGCAATACTTTGTAATATTGT 57.499 30.769 0.00 0.00 39.80 2.71
3892 5158 8.138365 TCGGAGCAATACTTTGTAATATTGTC 57.862 34.615 0.00 0.00 39.80 3.18
3896 5164 9.937175 GAGCAATACTTTGTAATATTGTCCTTC 57.063 33.333 0.00 0.00 39.80 3.46
3913 5208 5.030295 GTCCTTCATAACATGTTTGCATCG 58.970 41.667 17.78 1.44 31.99 3.84
3921 5220 2.110990 CATGTTTGCATCGGCGTAATG 58.889 47.619 6.85 5.39 45.35 1.90
3949 5250 8.731275 AACAACATTATCTTCATGGATAACGA 57.269 30.769 6.57 0.00 39.85 3.85
3953 5254 7.679783 ACATTATCTTCATGGATAACGATGGA 58.320 34.615 6.57 0.00 39.85 3.41
3956 5257 4.898320 TCTTCATGGATAACGATGGATGG 58.102 43.478 0.00 0.00 33.96 3.51
3968 5269 3.126858 ACGATGGATGGTTTCAATGAACG 59.873 43.478 0.00 0.00 0.00 3.95
3979 5280 5.154222 GTTTCAATGAACGAATCCCACTTC 58.846 41.667 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.518068 GTGGCGGGGCTATGTTGC 61.518 66.667 0.00 0.00 0.00 4.17
61 62 2.542211 GATTTGTTTCCCTGCCGCCG 62.542 60.000 0.00 0.00 0.00 6.46
62 63 1.215382 GATTTGTTTCCCTGCCGCC 59.785 57.895 0.00 0.00 0.00 6.13
63 64 0.109132 CAGATTTGTTTCCCTGCCGC 60.109 55.000 0.00 0.00 0.00 6.53
64 65 1.470098 CTCAGATTTGTTTCCCTGCCG 59.530 52.381 0.00 0.00 0.00 5.69
65 66 2.795329 TCTCAGATTTGTTTCCCTGCC 58.205 47.619 0.00 0.00 0.00 4.85
66 67 4.012374 TCATCTCAGATTTGTTTCCCTGC 58.988 43.478 0.00 0.00 0.00 4.85
67 68 4.639310 CCTCATCTCAGATTTGTTTCCCTG 59.361 45.833 0.00 0.00 0.00 4.45
68 69 4.537688 TCCTCATCTCAGATTTGTTTCCCT 59.462 41.667 0.00 0.00 0.00 4.20
69 70 4.848357 TCCTCATCTCAGATTTGTTTCCC 58.152 43.478 0.00 0.00 0.00 3.97
70 71 4.880696 CCTCCTCATCTCAGATTTGTTTCC 59.119 45.833 0.00 0.00 0.00 3.13
71 72 4.335037 GCCTCCTCATCTCAGATTTGTTTC 59.665 45.833 0.00 0.00 0.00 2.78
72 73 4.268359 GCCTCCTCATCTCAGATTTGTTT 58.732 43.478 0.00 0.00 0.00 2.83
73 74 3.681034 CGCCTCCTCATCTCAGATTTGTT 60.681 47.826 0.00 0.00 0.00 2.83
74 75 2.158986 CGCCTCCTCATCTCAGATTTGT 60.159 50.000 0.00 0.00 0.00 2.83
75 76 2.481854 CGCCTCCTCATCTCAGATTTG 58.518 52.381 0.00 0.00 0.00 2.32
76 77 1.202627 GCGCCTCCTCATCTCAGATTT 60.203 52.381 0.00 0.00 0.00 2.17
77 78 0.392336 GCGCCTCCTCATCTCAGATT 59.608 55.000 0.00 0.00 0.00 2.40
78 79 0.469705 AGCGCCTCCTCATCTCAGAT 60.470 55.000 2.29 0.00 0.00 2.90
79 80 1.076412 AGCGCCTCCTCATCTCAGA 60.076 57.895 2.29 0.00 0.00 3.27
80 81 1.067749 CAGCGCCTCCTCATCTCAG 59.932 63.158 2.29 0.00 0.00 3.35
81 82 2.429767 CCAGCGCCTCCTCATCTCA 61.430 63.158 2.29 0.00 0.00 3.27
82 83 2.420890 CCAGCGCCTCCTCATCTC 59.579 66.667 2.29 0.00 0.00 2.75
83 84 3.160047 CCCAGCGCCTCCTCATCT 61.160 66.667 2.29 0.00 0.00 2.90
84 85 3.157252 TCCCAGCGCCTCCTCATC 61.157 66.667 2.29 0.00 0.00 2.92
85 86 3.160047 CTCCCAGCGCCTCCTCAT 61.160 66.667 2.29 0.00 0.00 2.90
88 89 4.488911 ATCCTCCCAGCGCCTCCT 62.489 66.667 2.29 0.00 0.00 3.69
89 90 4.247380 CATCCTCCCAGCGCCTCC 62.247 72.222 2.29 0.00 0.00 4.30
90 91 2.657102 CTTCATCCTCCCAGCGCCTC 62.657 65.000 2.29 0.00 0.00 4.70
91 92 2.688666 TTCATCCTCCCAGCGCCT 60.689 61.111 2.29 0.00 0.00 5.52
92 93 2.203126 CTTCATCCTCCCAGCGCC 60.203 66.667 2.29 0.00 0.00 6.53
93 94 2.203126 CCTTCATCCTCCCAGCGC 60.203 66.667 0.00 0.00 0.00 5.92
94 95 1.626356 TTCCCTTCATCCTCCCAGCG 61.626 60.000 0.00 0.00 0.00 5.18
95 96 0.106967 GTTCCCTTCATCCTCCCAGC 60.107 60.000 0.00 0.00 0.00 4.85
96 97 0.179000 CGTTCCCTTCATCCTCCCAG 59.821 60.000 0.00 0.00 0.00 4.45
97 98 1.910580 GCGTTCCCTTCATCCTCCCA 61.911 60.000 0.00 0.00 0.00 4.37
98 99 1.153147 GCGTTCCCTTCATCCTCCC 60.153 63.158 0.00 0.00 0.00 4.30
99 100 1.153147 GGCGTTCCCTTCATCCTCC 60.153 63.158 0.00 0.00 0.00 4.30
100 101 0.744771 GTGGCGTTCCCTTCATCCTC 60.745 60.000 0.00 0.00 0.00 3.71
101 102 1.299976 GTGGCGTTCCCTTCATCCT 59.700 57.895 0.00 0.00 0.00 3.24
102 103 1.749258 GGTGGCGTTCCCTTCATCC 60.749 63.158 0.00 0.00 0.00 3.51
103 104 1.749258 GGGTGGCGTTCCCTTCATC 60.749 63.158 5.20 0.00 41.58 2.92
104 105 2.355115 GGGTGGCGTTCCCTTCAT 59.645 61.111 5.20 0.00 41.58 2.57
105 106 4.323477 CGGGTGGCGTTCCCTTCA 62.323 66.667 9.80 0.00 42.56 3.02
106 107 4.324991 ACGGGTGGCGTTCCCTTC 62.325 66.667 9.80 0.00 42.56 3.46
107 108 4.636435 CACGGGTGGCGTTCCCTT 62.636 66.667 9.80 0.00 42.56 3.95
135 136 4.790861 GAAGTCCCCGCGTCGTCC 62.791 72.222 4.92 0.00 0.00 4.79
136 137 1.722636 ATAGAAGTCCCCGCGTCGTC 61.723 60.000 4.92 0.68 0.00 4.20
137 138 1.318158 AATAGAAGTCCCCGCGTCGT 61.318 55.000 4.92 0.00 0.00 4.34
138 139 0.870307 CAATAGAAGTCCCCGCGTCG 60.870 60.000 4.92 0.00 0.00 5.12
139 140 0.175073 ACAATAGAAGTCCCCGCGTC 59.825 55.000 4.92 0.00 0.00 5.19
140 141 0.108329 CACAATAGAAGTCCCCGCGT 60.108 55.000 4.92 0.00 0.00 6.01
141 142 0.174845 TCACAATAGAAGTCCCCGCG 59.825 55.000 0.00 0.00 0.00 6.46
142 143 2.396590 TTCACAATAGAAGTCCCCGC 57.603 50.000 0.00 0.00 0.00 6.13
143 144 3.623060 CACATTCACAATAGAAGTCCCCG 59.377 47.826 0.00 0.00 0.00 5.73
144 145 3.947834 CCACATTCACAATAGAAGTCCCC 59.052 47.826 0.00 0.00 0.00 4.81
145 146 4.843728 TCCACATTCACAATAGAAGTCCC 58.156 43.478 0.00 0.00 0.00 4.46
146 147 5.355350 CCTTCCACATTCACAATAGAAGTCC 59.645 44.000 0.00 0.00 0.00 3.85
147 148 5.355350 CCCTTCCACATTCACAATAGAAGTC 59.645 44.000 0.00 0.00 0.00 3.01
148 149 5.014123 TCCCTTCCACATTCACAATAGAAGT 59.986 40.000 0.00 0.00 0.00 3.01
149 150 5.500234 TCCCTTCCACATTCACAATAGAAG 58.500 41.667 0.00 0.00 0.00 2.85
150 151 5.512942 TCCCTTCCACATTCACAATAGAA 57.487 39.130 0.00 0.00 0.00 2.10
151 152 5.512942 TTCCCTTCCACATTCACAATAGA 57.487 39.130 0.00 0.00 0.00 1.98
152 153 7.282585 TCTATTCCCTTCCACATTCACAATAG 58.717 38.462 0.00 0.00 0.00 1.73
153 154 7.206789 TCTATTCCCTTCCACATTCACAATA 57.793 36.000 0.00 0.00 0.00 1.90
154 155 6.078456 TCTATTCCCTTCCACATTCACAAT 57.922 37.500 0.00 0.00 0.00 2.71
155 156 5.500234 CTCTATTCCCTTCCACATTCACAA 58.500 41.667 0.00 0.00 0.00 3.33
156 157 4.626287 GCTCTATTCCCTTCCACATTCACA 60.626 45.833 0.00 0.00 0.00 3.58
157 158 3.879892 GCTCTATTCCCTTCCACATTCAC 59.120 47.826 0.00 0.00 0.00 3.18
158 159 3.523157 TGCTCTATTCCCTTCCACATTCA 59.477 43.478 0.00 0.00 0.00 2.57
159 160 4.133078 CTGCTCTATTCCCTTCCACATTC 58.867 47.826 0.00 0.00 0.00 2.67
160 161 3.782523 TCTGCTCTATTCCCTTCCACATT 59.217 43.478 0.00 0.00 0.00 2.71
180 181 5.245075 CCCTTTTAGTGTCTTCTCTGTCTCT 59.755 44.000 0.00 0.00 0.00 3.10
207 210 0.252103 GGACTAGGGTGGTGACTCCA 60.252 60.000 0.00 0.00 45.98 3.86
217 220 1.844497 GCTAATGGGTTGGACTAGGGT 59.156 52.381 0.00 0.00 0.00 4.34
220 223 5.540337 TCTGATAGCTAATGGGTTGGACTAG 59.460 44.000 0.00 0.00 0.00 2.57
228 231 1.620819 CGCCTCTGATAGCTAATGGGT 59.379 52.381 0.00 0.00 0.00 4.51
236 239 1.319541 TCCACTACGCCTCTGATAGC 58.680 55.000 0.00 0.00 0.00 2.97
237 240 3.149981 TCATCCACTACGCCTCTGATAG 58.850 50.000 0.00 0.00 0.00 2.08
241 244 1.269988 CCATCATCCACTACGCCTCTG 60.270 57.143 0.00 0.00 0.00 3.35
246 249 2.205074 CTTCACCATCATCCACTACGC 58.795 52.381 0.00 0.00 0.00 4.42
262 265 2.613026 TTGTTGTCTTCTCGGCTTCA 57.387 45.000 0.00 0.00 0.00 3.02
268 271 4.672413 GTGCTTTCAATTGTTGTCTTCTCG 59.328 41.667 5.13 0.00 0.00 4.04
269 272 5.581605 TGTGCTTTCAATTGTTGTCTTCTC 58.418 37.500 5.13 0.00 0.00 2.87
271 274 6.020360 GTCTTGTGCTTTCAATTGTTGTCTTC 60.020 38.462 5.13 0.00 0.00 2.87
273 276 5.126061 AGTCTTGTGCTTTCAATTGTTGTCT 59.874 36.000 5.13 0.00 0.00 3.41
284 287 6.268566 ACTGAAATTGAAGTCTTGTGCTTTC 58.731 36.000 0.00 0.00 0.00 2.62
321 324 3.573538 TGTACCTGCAACATTGAGCAAAT 59.426 39.130 9.17 4.35 40.73 2.32
324 327 2.268762 TGTACCTGCAACATTGAGCA 57.731 45.000 7.95 7.95 39.25 4.26
335 338 8.813643 ATCTCTAACGTAATAATTGTACCTGC 57.186 34.615 0.00 0.00 0.00 4.85
362 365 6.774354 TCGCTATTCGTCAAAAGTAAAGTT 57.226 33.333 0.00 0.00 39.67 2.66
364 367 8.336498 TCTATCGCTATTCGTCAAAAGTAAAG 57.664 34.615 0.00 0.00 39.67 1.85
365 368 8.589629 GTTCTATCGCTATTCGTCAAAAGTAAA 58.410 33.333 0.00 0.00 39.67 2.01
367 370 7.478322 AGTTCTATCGCTATTCGTCAAAAGTA 58.522 34.615 0.00 0.00 39.67 2.24
369 372 6.814076 AGTTCTATCGCTATTCGTCAAAAG 57.186 37.500 0.00 0.00 39.67 2.27
374 382 9.823098 TTTAGATTAGTTCTATCGCTATTCGTC 57.177 33.333 0.00 0.00 36.81 4.20
399 407 6.245408 TGGAGTACAAGGCAAAACATAGATT 58.755 36.000 0.00 0.00 0.00 2.40
401 409 5.235850 TGGAGTACAAGGCAAAACATAGA 57.764 39.130 0.00 0.00 0.00 1.98
431 442 5.825679 GGGTATACAAAGAATACACCATGCA 59.174 40.000 5.01 0.00 32.49 3.96
454 465 0.616371 TTGATGTGACCCCCGTTAGG 59.384 55.000 0.00 0.00 37.24 2.69
455 466 2.710096 ATTGATGTGACCCCCGTTAG 57.290 50.000 0.00 0.00 0.00 2.34
456 467 2.838813 TGTATTGATGTGACCCCCGTTA 59.161 45.455 0.00 0.00 0.00 3.18
457 468 1.631388 TGTATTGATGTGACCCCCGTT 59.369 47.619 0.00 0.00 0.00 4.44
458 469 1.065709 GTGTATTGATGTGACCCCCGT 60.066 52.381 0.00 0.00 0.00 5.28
459 470 1.663695 GTGTATTGATGTGACCCCCG 58.336 55.000 0.00 0.00 0.00 5.73
460 471 1.283613 TGGTGTATTGATGTGACCCCC 59.716 52.381 0.00 0.00 0.00 5.40
461 472 2.799126 TGGTGTATTGATGTGACCCC 57.201 50.000 0.00 0.00 0.00 4.95
462 473 3.016736 CCTTGGTGTATTGATGTGACCC 58.983 50.000 0.00 0.00 0.00 4.46
463 474 3.950397 TCCTTGGTGTATTGATGTGACC 58.050 45.455 0.00 0.00 0.00 4.02
464 475 5.882557 AGAATCCTTGGTGTATTGATGTGAC 59.117 40.000 0.00 0.00 0.00 3.67
465 476 6.065976 AGAATCCTTGGTGTATTGATGTGA 57.934 37.500 0.00 0.00 0.00 3.58
466 477 9.212641 CTATAGAATCCTTGGTGTATTGATGTG 57.787 37.037 0.00 0.00 0.00 3.21
467 478 8.938883 ACTATAGAATCCTTGGTGTATTGATGT 58.061 33.333 6.78 0.00 0.00 3.06
468 479 9.784531 AACTATAGAATCCTTGGTGTATTGATG 57.215 33.333 6.78 0.00 0.00 3.07
470 481 9.832445 GAAACTATAGAATCCTTGGTGTATTGA 57.168 33.333 6.78 0.00 0.00 2.57
471 482 9.838339 AGAAACTATAGAATCCTTGGTGTATTG 57.162 33.333 6.78 0.00 0.00 1.90
527 538 1.903404 CCCAGGAGCGCACCTTTTT 60.903 57.895 24.71 0.00 38.32 1.94
528 539 2.282462 CCCAGGAGCGCACCTTTT 60.282 61.111 24.71 0.06 38.32 2.27
529 540 2.351924 TTTCCCAGGAGCGCACCTTT 62.352 55.000 24.71 0.92 38.32 3.11
530 541 2.351924 TTTTCCCAGGAGCGCACCTT 62.352 55.000 24.71 6.83 38.32 3.50
531 542 2.754664 CTTTTCCCAGGAGCGCACCT 62.755 60.000 21.59 21.59 41.43 4.00
532 543 2.282180 TTTTCCCAGGAGCGCACC 60.282 61.111 16.88 16.88 0.00 5.01
533 544 0.678048 ATCTTTTCCCAGGAGCGCAC 60.678 55.000 11.47 1.97 0.00 5.34
534 545 0.392998 GATCTTTTCCCAGGAGCGCA 60.393 55.000 11.47 0.00 0.00 6.09
535 546 0.392998 TGATCTTTTCCCAGGAGCGC 60.393 55.000 0.00 0.00 0.00 5.92
536 547 2.113860 TTGATCTTTTCCCAGGAGCG 57.886 50.000 0.00 0.00 0.00 5.03
537 548 3.425659 AGTTTGATCTTTTCCCAGGAGC 58.574 45.455 0.00 0.00 0.00 4.70
538 549 5.810095 AGTAGTTTGATCTTTTCCCAGGAG 58.190 41.667 0.00 0.00 0.00 3.69
539 550 5.843019 AGTAGTTTGATCTTTTCCCAGGA 57.157 39.130 0.00 0.00 0.00 3.86
540 551 7.338710 TCATAGTAGTTTGATCTTTTCCCAGG 58.661 38.462 0.00 0.00 0.00 4.45
541 552 7.497249 CCTCATAGTAGTTTGATCTTTTCCCAG 59.503 40.741 0.00 0.00 0.00 4.45
542 553 7.037586 ACCTCATAGTAGTTTGATCTTTTCCCA 60.038 37.037 0.00 0.00 0.00 4.37
543 554 7.281100 CACCTCATAGTAGTTTGATCTTTTCCC 59.719 40.741 0.00 0.00 0.00 3.97
544 555 7.201652 GCACCTCATAGTAGTTTGATCTTTTCC 60.202 40.741 0.00 0.00 0.00 3.13
545 556 7.550906 AGCACCTCATAGTAGTTTGATCTTTTC 59.449 37.037 0.00 0.00 0.00 2.29
546 557 7.398024 AGCACCTCATAGTAGTTTGATCTTTT 58.602 34.615 0.00 0.00 0.00 2.27
547 558 6.951971 AGCACCTCATAGTAGTTTGATCTTT 58.048 36.000 0.00 0.00 0.00 2.52
548 559 6.552445 AGCACCTCATAGTAGTTTGATCTT 57.448 37.500 0.00 0.00 0.00 2.40
549 560 6.552445 AAGCACCTCATAGTAGTTTGATCT 57.448 37.500 0.00 0.00 0.00 2.75
550 561 7.414540 CCAAAAGCACCTCATAGTAGTTTGATC 60.415 40.741 0.00 0.00 0.00 2.92
551 562 6.375455 CCAAAAGCACCTCATAGTAGTTTGAT 59.625 38.462 0.00 0.00 0.00 2.57
552 563 5.705441 CCAAAAGCACCTCATAGTAGTTTGA 59.295 40.000 0.00 0.00 0.00 2.69
553 564 5.705441 TCCAAAAGCACCTCATAGTAGTTTG 59.295 40.000 0.00 0.00 0.00 2.93
554 565 5.876357 TCCAAAAGCACCTCATAGTAGTTT 58.124 37.500 0.00 0.00 0.00 2.66
555 566 5.499004 TCCAAAAGCACCTCATAGTAGTT 57.501 39.130 0.00 0.00 0.00 2.24
556 567 5.491982 CTTCCAAAAGCACCTCATAGTAGT 58.508 41.667 0.00 0.00 0.00 2.73
570 581 4.755411 TCGTACTAGGATGCTTCCAAAAG 58.245 43.478 19.98 15.25 45.30 2.27
571 582 4.811969 TCGTACTAGGATGCTTCCAAAA 57.188 40.909 19.98 5.03 45.30 2.44
572 583 4.020928 TGTTCGTACTAGGATGCTTCCAAA 60.021 41.667 19.98 7.36 45.30 3.28
573 584 3.512329 TGTTCGTACTAGGATGCTTCCAA 59.488 43.478 19.98 1.73 45.30 3.53
574 585 3.093814 TGTTCGTACTAGGATGCTTCCA 58.906 45.455 19.98 6.09 45.30 3.53
575 586 3.795623 TGTTCGTACTAGGATGCTTCC 57.204 47.619 10.66 10.66 42.96 3.46
576 587 5.232414 GTGAATGTTCGTACTAGGATGCTTC 59.768 44.000 0.00 0.00 0.00 3.86
577 588 5.109903 GTGAATGTTCGTACTAGGATGCTT 58.890 41.667 0.00 0.00 0.00 3.91
578 589 4.441634 GGTGAATGTTCGTACTAGGATGCT 60.442 45.833 0.00 0.00 0.00 3.79
579 590 3.802685 GGTGAATGTTCGTACTAGGATGC 59.197 47.826 0.00 0.00 0.00 3.91
580 591 4.804139 GTGGTGAATGTTCGTACTAGGATG 59.196 45.833 0.00 0.00 0.00 3.51
581 592 4.710375 AGTGGTGAATGTTCGTACTAGGAT 59.290 41.667 0.00 0.00 0.00 3.24
582 593 4.084287 AGTGGTGAATGTTCGTACTAGGA 58.916 43.478 0.00 0.00 0.00 2.94
583 594 4.451629 AGTGGTGAATGTTCGTACTAGG 57.548 45.455 0.00 0.00 0.00 3.02
584 595 5.026462 CGTAGTGGTGAATGTTCGTACTAG 58.974 45.833 0.00 0.00 0.00 2.57
585 596 4.455533 ACGTAGTGGTGAATGTTCGTACTA 59.544 41.667 0.00 0.00 42.51 1.82
586 597 3.254166 ACGTAGTGGTGAATGTTCGTACT 59.746 43.478 0.00 0.00 42.51 2.73
587 598 3.568538 ACGTAGTGGTGAATGTTCGTAC 58.431 45.455 0.00 0.00 42.51 3.67
588 599 3.921119 ACGTAGTGGTGAATGTTCGTA 57.079 42.857 0.00 0.00 42.51 3.43
589 600 2.806608 ACGTAGTGGTGAATGTTCGT 57.193 45.000 0.00 0.00 42.51 3.85
603 614 0.175989 GCCCCTCCTCTTTGACGTAG 59.824 60.000 0.00 0.00 0.00 3.51
604 615 1.601419 CGCCCCTCCTCTTTGACGTA 61.601 60.000 0.00 0.00 0.00 3.57
605 616 2.943978 CGCCCCTCCTCTTTGACGT 61.944 63.158 0.00 0.00 0.00 4.34
606 617 2.125512 CGCCCCTCCTCTTTGACG 60.126 66.667 0.00 0.00 0.00 4.35
607 618 2.269241 CCGCCCCTCCTCTTTGAC 59.731 66.667 0.00 0.00 0.00 3.18
608 619 3.717294 GCCGCCCCTCCTCTTTGA 61.717 66.667 0.00 0.00 0.00 2.69
609 620 4.803908 GGCCGCCCCTCCTCTTTG 62.804 72.222 0.00 0.00 0.00 2.77
611 622 3.714078 TATGGCCGCCCCTCCTCTT 62.714 63.158 7.03 0.00 0.00 2.85
612 623 3.714078 TTATGGCCGCCCCTCCTCT 62.714 63.158 7.03 0.00 0.00 3.69
613 624 3.168528 TTATGGCCGCCCCTCCTC 61.169 66.667 7.03 0.00 0.00 3.71
614 625 3.171388 CTTATGGCCGCCCCTCCT 61.171 66.667 7.03 0.00 0.00 3.69
615 626 3.056754 AACTTATGGCCGCCCCTCC 62.057 63.158 7.03 0.00 0.00 4.30
616 627 1.823899 CAACTTATGGCCGCCCCTC 60.824 63.158 7.03 0.00 0.00 4.30
617 628 2.270874 CTCAACTTATGGCCGCCCCT 62.271 60.000 7.03 0.00 0.00 4.79
618 629 1.823899 CTCAACTTATGGCCGCCCC 60.824 63.158 7.03 0.00 0.00 5.80
619 630 0.679960 AACTCAACTTATGGCCGCCC 60.680 55.000 7.03 0.00 0.00 6.13
620 631 0.451783 CAACTCAACTTATGGCCGCC 59.548 55.000 1.04 1.04 0.00 6.13
621 632 0.179163 GCAACTCAACTTATGGCCGC 60.179 55.000 0.00 0.00 0.00 6.53
622 633 1.453155 AGCAACTCAACTTATGGCCG 58.547 50.000 0.00 0.00 0.00 6.13
623 634 3.942130 AAAGCAACTCAACTTATGGCC 57.058 42.857 0.00 0.00 0.00 5.36
624 635 8.244113 ACTAATTAAAGCAACTCAACTTATGGC 58.756 33.333 0.00 0.00 0.00 4.40
629 640 9.683069 CATCAACTAATTAAAGCAACTCAACTT 57.317 29.630 0.00 0.00 0.00 2.66
630 641 7.809806 GCATCAACTAATTAAAGCAACTCAACT 59.190 33.333 0.00 0.00 0.00 3.16
631 642 7.594758 TGCATCAACTAATTAAAGCAACTCAAC 59.405 33.333 0.00 0.00 0.00 3.18
632 643 7.656412 TGCATCAACTAATTAAAGCAACTCAA 58.344 30.769 0.00 0.00 0.00 3.02
633 644 7.213216 TGCATCAACTAATTAAAGCAACTCA 57.787 32.000 0.00 0.00 0.00 3.41
634 645 6.252228 GCTGCATCAACTAATTAAAGCAACTC 59.748 38.462 0.00 0.00 0.00 3.01
635 646 6.095377 GCTGCATCAACTAATTAAAGCAACT 58.905 36.000 0.00 0.00 0.00 3.16
636 647 5.289434 GGCTGCATCAACTAATTAAAGCAAC 59.711 40.000 0.50 0.00 0.00 4.17
637 648 5.410067 GGCTGCATCAACTAATTAAAGCAA 58.590 37.500 0.50 0.00 0.00 3.91
638 649 4.438608 CGGCTGCATCAACTAATTAAAGCA 60.439 41.667 0.50 0.00 0.00 3.91
639 650 4.037690 CGGCTGCATCAACTAATTAAAGC 58.962 43.478 0.50 0.00 0.00 3.51
640 651 5.484173 TCGGCTGCATCAACTAATTAAAG 57.516 39.130 0.50 0.00 0.00 1.85
641 652 5.888691 TTCGGCTGCATCAACTAATTAAA 57.111 34.783 0.50 0.00 0.00 1.52
642 653 5.733091 GCATTCGGCTGCATCAACTAATTAA 60.733 40.000 0.50 0.00 41.87 1.40
643 654 4.261155 GCATTCGGCTGCATCAACTAATTA 60.261 41.667 0.50 0.00 41.87 1.40
644 655 3.489738 GCATTCGGCTGCATCAACTAATT 60.490 43.478 0.50 0.00 41.87 1.40
645 656 2.033801 GCATTCGGCTGCATCAACTAAT 59.966 45.455 0.50 0.00 41.87 1.73
646 657 1.401552 GCATTCGGCTGCATCAACTAA 59.598 47.619 0.50 0.00 41.87 2.24
647 658 1.016627 GCATTCGGCTGCATCAACTA 58.983 50.000 0.50 0.00 41.87 2.24
648 659 1.660560 GGCATTCGGCTGCATCAACT 61.661 55.000 0.50 0.00 44.12 3.16
649 660 1.226773 GGCATTCGGCTGCATCAAC 60.227 57.895 0.50 0.00 44.12 3.18
650 661 1.249469 TTGGCATTCGGCTGCATCAA 61.249 50.000 0.50 5.46 44.12 2.57
651 662 1.249469 TTTGGCATTCGGCTGCATCA 61.249 50.000 0.50 0.17 44.12 3.07
652 663 0.526954 CTTTGGCATTCGGCTGCATC 60.527 55.000 0.50 0.00 44.12 3.91
653 664 1.252904 ACTTTGGCATTCGGCTGCAT 61.253 50.000 0.50 0.00 44.12 3.96
654 665 1.902918 ACTTTGGCATTCGGCTGCA 60.903 52.632 0.50 0.00 44.12 4.41
655 666 1.444895 CACTTTGGCATTCGGCTGC 60.445 57.895 0.00 0.00 44.01 5.25
656 667 0.387622 CACACTTTGGCATTCGGCTG 60.388 55.000 0.00 0.00 44.01 4.85
657 668 1.526575 CCACACTTTGGCATTCGGCT 61.527 55.000 0.00 0.00 44.01 5.52
658 669 1.080569 CCACACTTTGGCATTCGGC 60.081 57.895 0.00 0.00 39.07 5.54
667 678 1.533756 CGACTTGCCAACCACACTTTG 60.534 52.381 0.00 0.00 0.00 2.77
668 679 0.738389 CGACTTGCCAACCACACTTT 59.262 50.000 0.00 0.00 0.00 2.66
669 680 1.724582 GCGACTTGCCAACCACACTT 61.725 55.000 0.00 0.00 37.76 3.16
670 681 2.186826 GCGACTTGCCAACCACACT 61.187 57.895 0.00 0.00 37.76 3.55
671 682 1.795170 ATGCGACTTGCCAACCACAC 61.795 55.000 0.00 0.00 45.60 3.82
672 683 1.106351 AATGCGACTTGCCAACCACA 61.106 50.000 0.00 0.00 45.60 4.17
673 684 0.031994 AAATGCGACTTGCCAACCAC 59.968 50.000 0.00 0.00 45.60 4.16
674 685 0.313672 GAAATGCGACTTGCCAACCA 59.686 50.000 0.00 0.00 45.60 3.67
675 686 0.313672 TGAAATGCGACTTGCCAACC 59.686 50.000 0.00 0.00 45.60 3.77
676 687 2.352503 ATGAAATGCGACTTGCCAAC 57.647 45.000 0.00 0.00 45.60 3.77
677 688 4.082300 ACAATATGAAATGCGACTTGCCAA 60.082 37.500 0.00 0.00 45.60 4.52
678 689 3.443329 ACAATATGAAATGCGACTTGCCA 59.557 39.130 0.00 0.00 45.60 4.92
679 690 4.032703 ACAATATGAAATGCGACTTGCC 57.967 40.909 0.00 0.00 45.60 4.52
680 691 4.731961 CAGACAATATGAAATGCGACTTGC 59.268 41.667 0.00 0.00 46.70 4.01
681 692 5.872635 ACAGACAATATGAAATGCGACTTG 58.127 37.500 0.00 0.00 0.00 3.16
682 693 6.317088 CAACAGACAATATGAAATGCGACTT 58.683 36.000 0.00 0.00 0.00 3.01
683 694 5.674569 GCAACAGACAATATGAAATGCGACT 60.675 40.000 0.00 0.00 0.00 4.18
684 695 4.496895 GCAACAGACAATATGAAATGCGAC 59.503 41.667 0.00 0.00 0.00 5.19
685 696 4.395854 AGCAACAGACAATATGAAATGCGA 59.604 37.500 0.00 0.00 36.45 5.10
686 697 4.497966 CAGCAACAGACAATATGAAATGCG 59.502 41.667 0.00 0.00 36.45 4.73
687 698 5.404946 ACAGCAACAGACAATATGAAATGC 58.595 37.500 0.00 0.00 0.00 3.56
688 699 7.148705 CCAAACAGCAACAGACAATATGAAATG 60.149 37.037 0.00 0.00 0.00 2.32
689 700 6.869913 CCAAACAGCAACAGACAATATGAAAT 59.130 34.615 0.00 0.00 0.00 2.17
690 701 6.215121 CCAAACAGCAACAGACAATATGAAA 58.785 36.000 0.00 0.00 0.00 2.69
691 702 5.278907 CCCAAACAGCAACAGACAATATGAA 60.279 40.000 0.00 0.00 0.00 2.57
692 703 4.218200 CCCAAACAGCAACAGACAATATGA 59.782 41.667 0.00 0.00 0.00 2.15
693 704 4.487948 CCCAAACAGCAACAGACAATATG 58.512 43.478 0.00 0.00 0.00 1.78
694 705 3.056607 GCCCAAACAGCAACAGACAATAT 60.057 43.478 0.00 0.00 0.00 1.28
695 706 2.295909 GCCCAAACAGCAACAGACAATA 59.704 45.455 0.00 0.00 0.00 1.90
696 707 1.069049 GCCCAAACAGCAACAGACAAT 59.931 47.619 0.00 0.00 0.00 2.71
697 708 0.459489 GCCCAAACAGCAACAGACAA 59.541 50.000 0.00 0.00 0.00 3.18
698 709 0.395586 AGCCCAAACAGCAACAGACA 60.396 50.000 0.00 0.00 0.00 3.41
699 710 1.266989 GTAGCCCAAACAGCAACAGAC 59.733 52.381 0.00 0.00 0.00 3.51
700 711 1.142870 AGTAGCCCAAACAGCAACAGA 59.857 47.619 0.00 0.00 0.00 3.41
701 712 1.609208 AGTAGCCCAAACAGCAACAG 58.391 50.000 0.00 0.00 0.00 3.16
702 713 2.778299 CTAGTAGCCCAAACAGCAACA 58.222 47.619 0.00 0.00 0.00 3.33
703 714 1.468914 GCTAGTAGCCCAAACAGCAAC 59.531 52.381 11.33 0.00 34.48 4.17
704 715 1.073125 TGCTAGTAGCCCAAACAGCAA 59.927 47.619 19.41 0.00 41.51 3.91
705 716 0.690192 TGCTAGTAGCCCAAACAGCA 59.310 50.000 19.41 0.00 41.51 4.41
706 717 1.339151 ACTGCTAGTAGCCCAAACAGC 60.339 52.381 19.41 0.00 41.51 4.40
707 718 2.350522 CACTGCTAGTAGCCCAAACAG 58.649 52.381 19.41 11.01 41.51 3.16
708 719 1.610624 GCACTGCTAGTAGCCCAAACA 60.611 52.381 19.41 0.00 41.51 2.83
709 720 1.087501 GCACTGCTAGTAGCCCAAAC 58.912 55.000 19.41 1.94 41.51 2.93
710 721 0.984230 AGCACTGCTAGTAGCCCAAA 59.016 50.000 19.41 0.00 41.51 3.28
711 722 0.537188 GAGCACTGCTAGTAGCCCAA 59.463 55.000 19.41 0.00 41.51 4.12
712 723 1.667154 CGAGCACTGCTAGTAGCCCA 61.667 60.000 19.41 0.68 41.51 5.36
713 724 1.066587 CGAGCACTGCTAGTAGCCC 59.933 63.158 19.41 5.53 41.51 5.19
714 725 0.671251 ATCGAGCACTGCTAGTAGCC 59.329 55.000 19.41 3.92 41.51 3.93
715 726 2.500509 AATCGAGCACTGCTAGTAGC 57.499 50.000 15.56 15.56 39.88 3.58
716 727 5.176407 AGTAAATCGAGCACTGCTAGTAG 57.824 43.478 2.71 6.26 39.88 2.57
717 728 5.821470 AGTAGTAAATCGAGCACTGCTAGTA 59.179 40.000 2.71 0.00 39.88 1.82
718 729 4.641094 AGTAGTAAATCGAGCACTGCTAGT 59.359 41.667 2.71 0.00 39.88 2.57
719 730 5.176407 AGTAGTAAATCGAGCACTGCTAG 57.824 43.478 2.71 3.90 39.88 3.42
720 731 5.124936 TCAAGTAGTAAATCGAGCACTGCTA 59.875 40.000 2.71 0.00 39.88 3.49
721 732 4.082190 TCAAGTAGTAAATCGAGCACTGCT 60.082 41.667 2.22 2.22 43.88 4.24
722 733 4.174009 TCAAGTAGTAAATCGAGCACTGC 58.826 43.478 6.61 0.00 0.00 4.40
723 734 6.036470 TGATCAAGTAGTAAATCGAGCACTG 58.964 40.000 0.00 0.00 0.00 3.66
724 735 6.127591 ACTGATCAAGTAGTAAATCGAGCACT 60.128 38.462 0.00 0.00 37.36 4.40
725 736 6.037098 ACTGATCAAGTAGTAAATCGAGCAC 58.963 40.000 0.00 0.00 37.36 4.40
726 737 6.208988 ACTGATCAAGTAGTAAATCGAGCA 57.791 37.500 0.00 0.00 37.36 4.26
727 738 5.396947 CGACTGATCAAGTAGTAAATCGAGC 59.603 44.000 0.00 0.00 40.07 5.03
728 739 5.396947 GCGACTGATCAAGTAGTAAATCGAG 59.603 44.000 0.00 0.00 40.07 4.04
729 740 5.163693 TGCGACTGATCAAGTAGTAAATCGA 60.164 40.000 0.00 0.00 40.07 3.59
730 741 5.034797 TGCGACTGATCAAGTAGTAAATCG 58.965 41.667 0.00 0.00 40.07 3.34
731 742 6.697455 TGATGCGACTGATCAAGTAGTAAATC 59.303 38.462 0.00 4.65 40.07 2.17
732 743 6.573434 TGATGCGACTGATCAAGTAGTAAAT 58.427 36.000 0.00 0.00 40.07 1.40
733 744 5.961272 TGATGCGACTGATCAAGTAGTAAA 58.039 37.500 0.00 0.00 40.07 2.01
734 745 5.576447 TGATGCGACTGATCAAGTAGTAA 57.424 39.130 0.00 0.00 40.07 2.24
735 746 5.560953 CGATGATGCGACTGATCAAGTAGTA 60.561 44.000 0.00 0.00 40.07 1.82
736 747 4.615949 GATGATGCGACTGATCAAGTAGT 58.384 43.478 0.00 0.00 40.07 2.73
737 748 3.667726 CGATGATGCGACTGATCAAGTAG 59.332 47.826 0.00 0.00 40.07 2.57
738 749 3.632189 CGATGATGCGACTGATCAAGTA 58.368 45.455 0.00 0.00 40.07 2.24
739 750 2.467838 CGATGATGCGACTGATCAAGT 58.532 47.619 0.00 0.00 43.85 3.16
740 751 1.191868 GCGATGATGCGACTGATCAAG 59.808 52.381 0.00 0.00 33.59 3.02
741 752 1.211743 GCGATGATGCGACTGATCAA 58.788 50.000 0.00 0.00 33.59 2.57
742 753 0.102844 TGCGATGATGCGACTGATCA 59.897 50.000 0.00 0.00 37.81 2.92
743 754 0.506080 GTGCGATGATGCGACTGATC 59.494 55.000 0.00 0.00 37.81 2.92
744 755 1.211181 CGTGCGATGATGCGACTGAT 61.211 55.000 0.00 0.00 37.81 2.90
745 756 1.873572 CGTGCGATGATGCGACTGA 60.874 57.895 0.00 0.00 37.81 3.41
746 757 2.617225 CGTGCGATGATGCGACTG 59.383 61.111 0.00 0.00 37.81 3.51
747 758 2.583319 CCGTGCGATGATGCGACT 60.583 61.111 0.00 0.00 37.81 4.18
748 759 2.860628 GACCGTGCGATGATGCGAC 61.861 63.158 0.00 0.00 37.81 5.19
749 760 2.582226 GACCGTGCGATGATGCGA 60.582 61.111 0.00 0.00 37.81 5.10
750 761 3.976375 CGACCGTGCGATGATGCG 61.976 66.667 0.00 0.00 37.81 4.73
751 762 2.860628 GACGACCGTGCGATGATGC 61.861 63.158 0.00 0.00 34.83 3.91
752 763 2.230940 GGACGACCGTGCGATGATG 61.231 63.158 0.00 0.00 34.83 3.07
753 764 2.104331 GGACGACCGTGCGATGAT 59.896 61.111 0.00 0.00 34.83 2.45
754 765 2.921797 TTGGACGACCGTGCGATGA 61.922 57.895 9.33 0.00 39.39 2.92
755 766 2.431771 TTGGACGACCGTGCGATG 60.432 61.111 9.33 0.00 39.39 3.84
756 767 2.431942 GTTGGACGACCGTGCGAT 60.432 61.111 7.24 0.00 39.39 4.58
757 768 4.651008 GGTTGGACGACCGTGCGA 62.651 66.667 9.33 4.80 39.39 5.10
758 769 4.953868 TGGTTGGACGACCGTGCG 62.954 66.667 9.33 0.00 42.83 5.34
759 770 1.512156 AATTGGTTGGACGACCGTGC 61.512 55.000 7.11 7.11 42.83 5.34
760 771 0.948678 AAATTGGTTGGACGACCGTG 59.051 50.000 0.00 0.00 42.83 4.94
761 772 1.682740 AAAATTGGTTGGACGACCGT 58.317 45.000 4.36 0.00 42.83 4.83
762 773 3.251487 AGTTAAAATTGGTTGGACGACCG 59.749 43.478 4.36 0.00 42.83 4.79
763 774 4.276431 TCAGTTAAAATTGGTTGGACGACC 59.724 41.667 1.59 1.59 40.23 4.79
764 775 5.237779 TCTCAGTTAAAATTGGTTGGACGAC 59.762 40.000 0.00 0.00 0.00 4.34
765 776 5.369833 TCTCAGTTAAAATTGGTTGGACGA 58.630 37.500 0.00 0.00 0.00 4.20
766 777 5.334879 CCTCTCAGTTAAAATTGGTTGGACG 60.335 44.000 0.00 0.00 0.00 4.79
767 778 5.768164 TCCTCTCAGTTAAAATTGGTTGGAC 59.232 40.000 0.00 0.00 0.00 4.02
768 779 5.947663 TCCTCTCAGTTAAAATTGGTTGGA 58.052 37.500 0.00 0.00 0.00 3.53
769 780 6.447162 GTTCCTCTCAGTTAAAATTGGTTGG 58.553 40.000 0.00 0.00 0.00 3.77
770 781 6.142817 CGTTCCTCTCAGTTAAAATTGGTTG 58.857 40.000 0.00 0.00 0.00 3.77
771 782 5.826208 ACGTTCCTCTCAGTTAAAATTGGTT 59.174 36.000 0.00 0.00 0.00 3.67
772 783 5.374071 ACGTTCCTCTCAGTTAAAATTGGT 58.626 37.500 0.00 0.00 0.00 3.67
773 784 5.941948 ACGTTCCTCTCAGTTAAAATTGG 57.058 39.130 0.00 0.00 0.00 3.16
774 785 6.371389 GGAACGTTCCTCTCAGTTAAAATTG 58.629 40.000 34.98 0.00 44.11 2.32
775 786 6.555812 GGAACGTTCCTCTCAGTTAAAATT 57.444 37.500 34.98 0.00 44.11 1.82
817 828 2.146073 ATTGGTGCGAGCAACCAAGC 62.146 55.000 24.61 6.48 45.32 4.01
819 830 1.106351 ACATTGGTGCGAGCAACCAA 61.106 50.000 23.59 23.59 46.05 3.67
858 869 3.886505 TGGTTTGGTGGTGATCAGTTAAC 59.113 43.478 0.00 0.00 0.00 2.01
864 875 0.553333 TGGTGGTTTGGTGGTGATCA 59.447 50.000 0.00 0.00 0.00 2.92
866 877 0.555769 AGTGGTGGTTTGGTGGTGAT 59.444 50.000 0.00 0.00 0.00 3.06
910 921 2.537401 GGGACATGAAGCGTACTGTAC 58.463 52.381 7.90 7.90 0.00 2.90
920 931 0.622665 AGGAAGCAGGGGACATGAAG 59.377 55.000 0.00 0.00 0.00 3.02
957 979 0.322975 GCTTCAGCTGAGGACTGGAA 59.677 55.000 28.36 5.15 38.21 3.53
1170 1201 4.742201 TGAAGCTCGCCGAGGTGC 62.742 66.667 20.57 18.86 39.62 5.01
1876 2000 3.492313 CAAGCTACACATTCGAAAAGGC 58.508 45.455 0.00 1.54 0.00 4.35
1891 2015 0.830444 ACGACCACCACTCCAAGCTA 60.830 55.000 0.00 0.00 0.00 3.32
2004 2140 5.754543 AAAATTGTTGAAATTGCACCTGG 57.245 34.783 0.00 0.00 0.00 4.45
2054 2208 9.806203 TGAAACTGCAGGATTCAATAATTAATG 57.194 29.630 25.81 0.00 30.60 1.90
2069 2223 1.131126 CGCCAGTATTGAAACTGCAGG 59.869 52.381 19.93 0.00 44.56 4.85
2145 2299 2.983907 TTTCGGGGCACAATACGATA 57.016 45.000 0.00 0.00 35.10 2.92
2156 2310 2.517650 TTGTTTGTGAATTTCGGGGC 57.482 45.000 0.00 0.00 0.00 5.80
2189 2349 1.133699 CAGCATGCTATTGGGGGAGAA 60.134 52.381 22.19 0.00 0.00 2.87
2191 2351 0.475475 TCAGCATGCTATTGGGGGAG 59.525 55.000 22.19 4.58 34.76 4.30
2193 2353 2.005370 AATCAGCATGCTATTGGGGG 57.995 50.000 22.19 6.22 34.76 5.40
2194 2354 5.014858 AGAATAATCAGCATGCTATTGGGG 58.985 41.667 22.19 7.04 34.76 4.96
2195 2355 5.944599 AGAGAATAATCAGCATGCTATTGGG 59.055 40.000 22.19 7.86 34.76 4.12
2197 2357 7.326305 GCAAAGAGAATAATCAGCATGCTATTG 59.674 37.037 22.19 9.72 34.76 1.90
2198 2358 7.230913 AGCAAAGAGAATAATCAGCATGCTATT 59.769 33.333 22.19 20.38 34.76 1.73
2201 2361 4.888239 AGCAAAGAGAATAATCAGCATGCT 59.112 37.500 16.30 16.30 34.76 3.79
2202 2362 5.184340 AGCAAAGAGAATAATCAGCATGC 57.816 39.130 10.51 10.51 34.76 4.06
2203 2363 7.222224 GGAAAAGCAAAGAGAATAATCAGCATG 59.778 37.037 0.00 0.00 37.54 4.06
2237 2405 1.217882 GATATGTATATGCGGCCGGC 58.782 55.000 29.38 21.18 43.96 6.13
2238 2406 1.138069 TGGATATGTATATGCGGCCGG 59.862 52.381 29.38 8.95 34.28 6.13
2239 2407 2.595124 TGGATATGTATATGCGGCCG 57.405 50.000 24.05 24.05 34.28 6.13
2240 2408 4.881273 TGATTTGGATATGTATATGCGGCC 59.119 41.667 0.00 0.00 34.28 6.13
2241 2409 6.435430 TTGATTTGGATATGTATATGCGGC 57.565 37.500 0.00 0.00 34.28 6.53
2242 2410 9.108284 TGTATTGATTTGGATATGTATATGCGG 57.892 33.333 0.05 0.00 34.28 5.69
2257 2425 4.577687 ACGCGTGTACTGTATTGATTTG 57.422 40.909 12.93 0.00 0.00 2.32
2259 2427 4.092383 GGAAACGCGTGTACTGTATTGATT 59.908 41.667 14.98 0.00 0.00 2.57
2539 3138 9.123902 CCATCATATGTCCAGATTTCTTGTTAA 57.876 33.333 1.90 0.00 0.00 2.01
2542 3141 5.533903 GCCATCATATGTCCAGATTTCTTGT 59.466 40.000 1.90 0.00 0.00 3.16
2543 3142 5.533528 TGCCATCATATGTCCAGATTTCTTG 59.466 40.000 1.90 0.00 0.00 3.02
2622 3457 1.880340 GCCGATCTTCTGCTCACCG 60.880 63.158 0.00 0.00 0.00 4.94
2742 3645 6.528423 GGATACGCTAATGAATGCTGTAGTAG 59.472 42.308 0.00 0.00 0.00 2.57
2746 3649 5.468540 AGGATACGCTAATGAATGCTGTA 57.531 39.130 0.00 0.00 46.39 2.74
2747 3650 4.342862 AGGATACGCTAATGAATGCTGT 57.657 40.909 0.00 0.00 46.39 4.40
2748 3651 5.237127 TGAAAGGATACGCTAATGAATGCTG 59.763 40.000 0.00 0.00 46.39 4.41
2749 3652 5.237344 GTGAAAGGATACGCTAATGAATGCT 59.763 40.000 0.00 0.00 46.39 3.79
2750 3653 5.237344 AGTGAAAGGATACGCTAATGAATGC 59.763 40.000 0.00 0.00 46.39 3.56
2751 3654 6.293081 CCAGTGAAAGGATACGCTAATGAATG 60.293 42.308 0.00 0.00 46.39 2.67
2752 3655 5.760253 CCAGTGAAAGGATACGCTAATGAAT 59.240 40.000 0.00 0.00 46.39 2.57
2753 3656 5.116180 CCAGTGAAAGGATACGCTAATGAA 58.884 41.667 0.00 0.00 46.39 2.57
2754 3657 4.693283 CCAGTGAAAGGATACGCTAATGA 58.307 43.478 0.00 0.00 46.39 2.57
2815 3734 1.672881 CCCTATTTGGAAGCAGAAGCG 59.327 52.381 0.00 0.00 41.91 4.68
2821 3745 2.178580 CAAAGCCCCTATTTGGAAGCA 58.821 47.619 0.00 0.00 37.37 3.91
2822 3746 2.967599 CAAAGCCCCTATTTGGAAGC 57.032 50.000 0.00 0.00 38.35 3.86
2827 3751 0.740737 CGAGCCAAAGCCCCTATTTG 59.259 55.000 0.00 0.00 41.25 2.32
2828 3752 0.395724 CCGAGCCAAAGCCCCTATTT 60.396 55.000 0.00 0.00 41.25 1.40
3110 4240 2.276116 TGAGAGCTCGAAAGGCCGT 61.276 57.895 8.37 0.00 0.00 5.68
3156 4286 5.139727 TGGTCCATCTCACTCAACATTTTT 58.860 37.500 0.00 0.00 0.00 1.94
3166 4296 3.033909 TCGATCATTGGTCCATCTCACT 58.966 45.455 0.00 0.00 0.00 3.41
3193 4323 4.498241 GGACCAGCCTTTGAAATGAATTC 58.502 43.478 0.00 0.00 38.60 2.17
3249 4379 9.286946 GTTCATTTTGCAATCAAACAATTTTCA 57.713 25.926 0.00 0.00 41.48 2.69
3251 4381 9.291664 CTGTTCATTTTGCAATCAAACAATTTT 57.708 25.926 0.00 0.00 41.48 1.82
3257 4387 6.774084 ACAACTGTTCATTTTGCAATCAAAC 58.226 32.000 0.00 3.91 41.48 2.93
3645 4790 7.600375 TCTTCGGATATTTGATATTGCACTCTC 59.400 37.037 0.00 0.00 0.00 3.20
3716 4972 7.148557 GCTAAGTAGGAGATGACTTTGTGTTTC 60.149 40.741 0.00 0.00 37.16 2.78
3891 5157 4.096231 CCGATGCAAACATGTTATGAAGGA 59.904 41.667 12.39 1.83 36.35 3.36
3892 5158 4.353737 CCGATGCAAACATGTTATGAAGG 58.646 43.478 12.39 7.88 36.35 3.46
3896 5164 2.110990 CGCCGATGCAAACATGTTATG 58.889 47.619 12.39 12.94 36.35 1.90
3941 5242 5.530915 TCATTGAAACCATCCATCGTTATCC 59.469 40.000 0.00 0.00 0.00 2.59
3947 5248 3.373748 TCGTTCATTGAAACCATCCATCG 59.626 43.478 0.00 0.00 0.00 3.84
3949 5250 5.163519 GGATTCGTTCATTGAAACCATCCAT 60.164 40.000 18.55 1.85 37.97 3.41
3953 5254 4.082245 GTGGGATTCGTTCATTGAAACCAT 60.082 41.667 0.00 0.00 39.34 3.55
3956 5257 4.766404 AGTGGGATTCGTTCATTGAAAC 57.234 40.909 0.00 0.00 0.00 2.78
3968 5269 5.514274 TGTTGAAAGTTGAAGTGGGATTC 57.486 39.130 0.00 0.00 0.00 2.52
4033 5334 5.885230 TCTGAAGTCATTGCTTTGTATGG 57.115 39.130 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.