Multiple sequence alignment - TraesCS5D01G413300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G413300 chr5D 100.000 4162 0 0 1 4162 476198506 476194345 0.000000e+00 7686
1 TraesCS5D01G413300 chr5B 89.817 2072 123 30 2135 4162 583711614 583709587 0.000000e+00 2577
2 TraesCS5D01G413300 chr5B 89.103 1248 91 21 693 1934 583713202 583711994 0.000000e+00 1509
3 TraesCS5D01G413300 chr5B 97.025 437 11 2 1 437 583713647 583713213 0.000000e+00 734
4 TraesCS5D01G413300 chr5B 90.055 181 12 5 1938 2114 583711918 583711740 3.240000e-56 230
5 TraesCS5D01G413300 chr5A 92.050 1849 91 28 2135 3956 595552991 595551172 0.000000e+00 2549
6 TraesCS5D01G413300 chr5A 88.127 1255 81 27 695 1934 595554564 595553363 0.000000e+00 1430
7 TraesCS5D01G413300 chr5A 91.116 484 27 12 2 476 595555394 595554918 3.510000e-180 641
8 TraesCS5D01G413300 chr5A 89.103 156 10 2 468 617 595554880 595554726 1.980000e-43 187
9 TraesCS5D01G413300 chr6B 85.695 734 57 21 1207 1934 426742891 426743582 0.000000e+00 730
10 TraesCS5D01G413300 chr6A 78.220 427 69 18 36 449 66752276 66751861 6.910000e-63 252
11 TraesCS5D01G413300 chr7B 80.426 235 28 10 216 449 478015786 478015569 3.330000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G413300 chr5D 476194345 476198506 4161 True 7686.00 7686 100.000 1 4162 1 chr5D.!!$R1 4161
1 TraesCS5D01G413300 chr5B 583709587 583713647 4060 True 1262.50 2577 91.500 1 4162 4 chr5B.!!$R1 4161
2 TraesCS5D01G413300 chr5A 595551172 595555394 4222 True 1201.75 2549 90.099 2 3956 4 chr5A.!!$R1 3954
3 TraesCS5D01G413300 chr6B 426742891 426743582 691 False 730.00 730 85.695 1207 1934 1 chr6B.!!$F1 727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 622 2.008268 GCGAAGGTGGCAATGGGATG 62.008 60.0 0.00 0.0 0.0 3.51 F
1591 1745 0.596082 TAGCGTTTCTTGGCCTTTGC 59.404 50.0 3.32 0.0 0.0 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1606 1760 0.320421 TTCAACGTAGGGCTGAGCAC 60.320 55.0 6.82 1.02 0.00 4.40 R
3584 3983 0.687354 AGTAGTGTCAGGGGCAACAG 59.313 55.0 0.00 0.00 39.74 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 130 9.165035 GCTTTTGGATGAAATTTATGAAATGGA 57.835 29.630 0.00 0.00 0.00 3.41
177 183 7.881142 ACAAAATATCGTGTCCAGATTTTCAA 58.119 30.769 0.00 0.00 29.51 2.69
193 199 4.689612 TTTCAAGTAACAGACTGCCTCT 57.310 40.909 1.25 0.00 38.87 3.69
460 469 9.725019 AGTTAGATGTTGTTTCAATACATGAGA 57.275 29.630 0.00 0.00 39.77 3.27
499 551 6.013379 TCAGTTTCATGGGCCTGTAATTTAA 58.987 36.000 4.53 0.00 0.00 1.52
502 554 7.823799 CAGTTTCATGGGCCTGTAATTTAATTT 59.176 33.333 4.53 0.00 0.00 1.82
504 556 5.669477 TCATGGGCCTGTAATTTAATTTGC 58.331 37.500 4.53 0.00 0.00 3.68
506 558 6.609212 TCATGGGCCTGTAATTTAATTTGCTA 59.391 34.615 4.53 0.00 0.00 3.49
570 622 2.008268 GCGAAGGTGGCAATGGGATG 62.008 60.000 0.00 0.00 0.00 3.51
586 644 5.517620 TGGGATGGTGAATGATATATGCA 57.482 39.130 0.00 0.00 0.00 3.96
607 665 5.864628 CAGGATGTGCATCAAGATCATAG 57.135 43.478 13.37 0.00 39.54 2.23
617 675 9.650539 GTGCATCAAGATCATAGAAGTACATAT 57.349 33.333 0.00 0.00 0.00 1.78
632 690 9.730705 AGAAGTACATATATGATTGGGTGAATG 57.269 33.333 19.63 0.00 0.00 2.67
643 701 7.399245 TGATTGGGTGAATGATATATGCATG 57.601 36.000 10.16 0.00 0.00 4.06
645 703 7.837187 TGATTGGGTGAATGATATATGCATGAT 59.163 33.333 10.16 2.15 0.00 2.45
646 704 7.399245 TTGGGTGAATGATATATGCATGATG 57.601 36.000 10.16 0.00 0.00 3.07
647 705 6.486941 TGGGTGAATGATATATGCATGATGT 58.513 36.000 10.16 0.00 0.00 3.06
648 706 6.376018 TGGGTGAATGATATATGCATGATGTG 59.624 38.462 10.16 0.00 0.00 3.21
668 726 9.428097 TGATGTGCATCAAGATCATATAAGTAC 57.572 33.333 11.95 0.00 44.14 2.73
669 727 9.428097 GATGTGCATCAAGATCATATAAGTACA 57.572 33.333 7.25 0.00 37.74 2.90
714 856 7.817418 TTTTAACCACTGGAATATATGGCTC 57.183 36.000 0.71 0.00 35.49 4.70
720 862 5.371526 CACTGGAATATATGGCTCTGTTGT 58.628 41.667 0.00 0.00 0.00 3.32
1210 1352 6.320418 TCCTCGTAGCATACTCAAACTGATTA 59.680 38.462 0.00 0.00 40.12 1.75
1345 1496 1.739562 CTTCCACAGGACGAGCAGC 60.740 63.158 0.00 0.00 0.00 5.25
1347 1498 2.433838 CCACAGGACGAGCAGCAG 60.434 66.667 0.00 0.00 0.00 4.24
1350 1501 2.433838 CAGGACGAGCAGCAGGTG 60.434 66.667 0.00 0.00 0.00 4.00
1482 1636 1.227943 TGTGCTCACCACTCTTGCC 60.228 57.895 0.00 0.00 44.92 4.52
1583 1737 6.238211 CCATATGAAGAGGTTAGCGTTTCTTG 60.238 42.308 3.65 0.00 30.49 3.02
1584 1738 3.399330 TGAAGAGGTTAGCGTTTCTTGG 58.601 45.455 0.00 0.00 30.49 3.61
1586 1740 0.803117 GAGGTTAGCGTTTCTTGGCC 59.197 55.000 0.00 0.00 0.00 5.36
1589 1743 1.611977 GGTTAGCGTTTCTTGGCCTTT 59.388 47.619 3.32 0.00 0.00 3.11
1590 1744 2.607038 GGTTAGCGTTTCTTGGCCTTTG 60.607 50.000 3.32 0.00 0.00 2.77
1591 1745 0.596082 TAGCGTTTCTTGGCCTTTGC 59.404 50.000 3.32 0.00 0.00 3.68
1620 1774 1.639298 GCTTTGTGCTCAGCCCTACG 61.639 60.000 0.00 0.00 38.95 3.51
1621 1775 0.320771 CTTTGTGCTCAGCCCTACGT 60.321 55.000 0.00 0.00 0.00 3.57
1628 1782 1.714794 CTCAGCCCTACGTTGAACAG 58.285 55.000 0.00 0.00 30.49 3.16
1641 1795 5.462405 ACGTTGAACAGAGAGATAACTGAC 58.538 41.667 0.00 0.00 37.54 3.51
1665 1819 6.128035 ACGCATAATGTTCAGCTAAATGTCAA 60.128 34.615 0.00 0.00 0.00 3.18
1672 1826 4.754372 TCAGCTAAATGTCAACAGCAAG 57.246 40.909 0.00 0.49 36.47 4.01
1675 1829 5.474532 TCAGCTAAATGTCAACAGCAAGAAT 59.525 36.000 0.00 0.00 36.47 2.40
1676 1830 6.654582 TCAGCTAAATGTCAACAGCAAGAATA 59.345 34.615 0.00 0.00 36.47 1.75
1677 1831 7.174772 TCAGCTAAATGTCAACAGCAAGAATAA 59.825 33.333 0.00 0.00 36.47 1.40
1678 1832 7.484007 CAGCTAAATGTCAACAGCAAGAATAAG 59.516 37.037 0.00 0.00 36.47 1.73
1700 1854 2.138596 AGTTTCGCTGCCATTTTGTG 57.861 45.000 0.00 0.00 0.00 3.33
1706 1863 3.339141 TCGCTGCCATTTTGTGTATACA 58.661 40.909 0.08 0.08 34.31 2.29
1707 1864 3.944650 TCGCTGCCATTTTGTGTATACAT 59.055 39.130 9.18 0.00 36.53 2.29
1708 1865 4.037021 CGCTGCCATTTTGTGTATACATG 58.963 43.478 9.18 2.63 36.53 3.21
1709 1866 4.201901 CGCTGCCATTTTGTGTATACATGA 60.202 41.667 9.18 0.00 36.53 3.07
1710 1867 5.649557 GCTGCCATTTTGTGTATACATGAA 58.350 37.500 9.18 4.44 36.53 2.57
1711 1868 6.098679 GCTGCCATTTTGTGTATACATGAAA 58.901 36.000 9.18 12.80 36.53 2.69
1712 1869 6.757947 GCTGCCATTTTGTGTATACATGAAAT 59.242 34.615 9.18 14.33 36.53 2.17
1713 1870 7.278424 GCTGCCATTTTGTGTATACATGAAATT 59.722 33.333 18.91 11.41 36.53 1.82
1714 1871 9.800433 CTGCCATTTTGTGTATACATGAAATTA 57.200 29.630 18.91 11.79 36.53 1.40
1715 1872 9.800433 TGCCATTTTGTGTATACATGAAATTAG 57.200 29.630 18.91 15.74 36.53 1.73
1716 1873 9.801873 GCCATTTTGTGTATACATGAAATTAGT 57.198 29.630 18.91 5.09 36.53 2.24
1725 1882 9.974980 TGTATACATGAAATTAGTCTATTGCGA 57.025 29.630 0.08 0.00 0.00 5.10
1727 1884 6.604735 ACATGAAATTAGTCTATTGCGACC 57.395 37.500 0.00 0.00 34.46 4.79
1728 1885 6.349300 ACATGAAATTAGTCTATTGCGACCT 58.651 36.000 0.00 0.00 34.46 3.85
1729 1886 6.823689 ACATGAAATTAGTCTATTGCGACCTT 59.176 34.615 0.00 0.00 34.46 3.50
1730 1887 6.903883 TGAAATTAGTCTATTGCGACCTTC 57.096 37.500 0.00 0.00 34.46 3.46
1739 1896 3.845781 ATTGCGACCTTCCAGATATGT 57.154 42.857 0.00 0.00 0.00 2.29
1749 1906 6.058183 ACCTTCCAGATATGTGTCATTTAGC 58.942 40.000 0.00 0.00 0.00 3.09
1776 1933 5.496133 AGATCTGATGCTTACAATTGCAC 57.504 39.130 5.05 0.00 42.26 4.57
1779 1936 6.825213 AGATCTGATGCTTACAATTGCACTAA 59.175 34.615 5.05 0.00 42.26 2.24
1780 1937 6.182039 TCTGATGCTTACAATTGCACTAAC 57.818 37.500 5.05 0.00 42.26 2.34
1788 1945 6.695278 GCTTACAATTGCACTAACTGAACAAA 59.305 34.615 5.05 0.00 0.00 2.83
1826 1983 4.142071 TGCAGTTCAGATCATGGTAGAGTC 60.142 45.833 0.00 0.00 0.00 3.36
1830 1987 5.126869 AGTTCAGATCATGGTAGAGTCACAG 59.873 44.000 0.00 0.00 0.00 3.66
1834 1991 0.904649 CATGGTAGAGTCACAGCCCA 59.095 55.000 0.00 0.00 0.00 5.36
1835 1992 1.487976 CATGGTAGAGTCACAGCCCAT 59.512 52.381 0.00 0.00 33.06 4.00
1836 1993 1.656587 TGGTAGAGTCACAGCCCATT 58.343 50.000 0.00 0.00 0.00 3.16
1837 1994 1.278985 TGGTAGAGTCACAGCCCATTG 59.721 52.381 0.00 0.00 0.00 2.82
1838 1995 1.373570 GTAGAGTCACAGCCCATTGC 58.626 55.000 0.00 0.00 41.71 3.56
1846 2003 0.539438 ACAGCCCATTGCGAAGGAAA 60.539 50.000 0.00 0.00 44.10 3.13
1847 2004 0.819582 CAGCCCATTGCGAAGGAAAT 59.180 50.000 0.00 0.00 44.10 2.17
1848 2005 2.023673 CAGCCCATTGCGAAGGAAATA 58.976 47.619 0.00 0.00 44.10 1.40
1870 2042 7.698836 ATAATTGCAATAGATCCAAAAACGC 57.301 32.000 13.39 0.00 0.00 4.84
1872 2044 2.486203 TGCAATAGATCCAAAAACGCGT 59.514 40.909 5.58 5.58 0.00 6.01
1921 2093 4.683320 GCCATGCTTCTTTTCTTCAAACTC 59.317 41.667 0.00 0.00 0.00 3.01
1934 2106 8.746052 TTTCTTCAAACTCCATCAGAACTTTA 57.254 30.769 0.00 0.00 0.00 1.85
1935 2107 7.730364 TCTTCAAACTCCATCAGAACTTTAC 57.270 36.000 0.00 0.00 0.00 2.01
1936 2108 6.710744 TCTTCAAACTCCATCAGAACTTTACC 59.289 38.462 0.00 0.00 0.00 2.85
1941 2185 5.178797 ACTCCATCAGAACTTTACCATTCG 58.821 41.667 0.00 0.00 0.00 3.34
1962 2206 5.432645 TCGGCATATTAAGTTGAACATCCA 58.567 37.500 0.00 0.00 0.00 3.41
2011 2255 5.010112 TCCGTTAATCCAACAAATGCTTTCA 59.990 36.000 0.00 0.00 36.92 2.69
2056 2312 3.507233 TGCAAGATGTTGGCTTTTCTAGG 59.493 43.478 4.57 0.00 33.87 3.02
2065 2321 3.189606 TGGCTTTTCTAGGGAAGATGGA 58.810 45.455 9.36 0.00 33.05 3.41
2093 2349 9.092876 GAAAATGATGGGTTTATTTATTTGCGA 57.907 29.630 0.00 0.00 0.00 5.10
2114 2370 6.983890 TGCGATTCATTGATTTAGTACTGCTA 59.016 34.615 5.39 0.00 0.00 3.49
2115 2371 7.494298 TGCGATTCATTGATTTAGTACTGCTAA 59.506 33.333 5.39 0.00 37.86 3.09
2116 2372 7.794349 GCGATTCATTGATTTAGTACTGCTAAC 59.206 37.037 5.39 0.00 39.22 2.34
2119 2375 7.539712 TCATTGATTTAGTACTGCTAACTGC 57.460 36.000 5.39 0.00 39.22 4.40
2146 2507 5.116180 TCTTTATCTGGTTATCTGGTTGCG 58.884 41.667 0.00 0.00 0.00 4.85
2148 2509 0.613260 TCTGGTTATCTGGTTGCGCT 59.387 50.000 9.73 0.00 0.00 5.92
2164 2525 2.551887 TGCGCTAACTGCATTTCTTTCA 59.448 40.909 9.73 0.00 43.06 2.69
2196 2557 4.884247 TCTTTGAATTGCATGCATGTTCA 58.116 34.783 30.00 30.00 32.79 3.18
2276 2637 2.894000 CACTGTTGTCGAATTTTACGCG 59.106 45.455 3.53 3.53 0.00 6.01
2407 2768 5.869649 AACAACTATGCTTTGGTTCCTTT 57.130 34.783 0.00 0.00 0.00 3.11
2423 2784 6.434028 TGGTTCCTTTACTGAAGAATTGATGG 59.566 38.462 0.00 0.00 37.57 3.51
2428 2789 8.336235 TCCTTTACTGAAGAATTGATGGGTATT 58.664 33.333 0.00 0.00 37.57 1.89
2429 2790 8.971073 CCTTTACTGAAGAATTGATGGGTATTT 58.029 33.333 0.00 0.00 37.57 1.40
2433 2794 7.945134 ACTGAAGAATTGATGGGTATTTATGC 58.055 34.615 0.00 0.00 0.00 3.14
2434 2795 7.781693 ACTGAAGAATTGATGGGTATTTATGCT 59.218 33.333 0.00 0.00 0.00 3.79
2444 2805 9.420118 TGATGGGTATTTATGCTTTCTTATTGT 57.580 29.630 0.00 0.00 0.00 2.71
2495 2856 5.865085 ACAACTTTGTATCTGGACAGCTAA 58.135 37.500 0.00 0.00 40.16 3.09
2501 2862 8.154856 ACTTTGTATCTGGACAGCTAAACTAAA 58.845 33.333 0.00 0.00 0.00 1.85
2523 2892 7.792374 AAACCTGTATAAGTGCAGTATCATG 57.208 36.000 0.00 0.00 36.45 3.07
2532 2901 1.097232 GCAGTATCATGCACTTGCCA 58.903 50.000 0.00 0.00 45.77 4.92
2534 2903 2.635714 CAGTATCATGCACTTGCCAGA 58.364 47.619 0.00 0.00 41.18 3.86
2538 2907 2.857186 TCATGCACTTGCCAGACTAA 57.143 45.000 0.00 0.00 41.18 2.24
2604 2978 6.670464 TCCTATAAAGTACTGATGGACCACAA 59.330 38.462 0.00 0.00 0.00 3.33
2617 2991 5.497464 TGGACCACAATTCATTAGTGAGA 57.503 39.130 0.00 0.00 35.39 3.27
2650 3024 9.181805 GTCAATAATTCAATTCTGATCTGCATG 57.818 33.333 0.00 0.00 0.00 4.06
2756 3136 6.591834 TGTTAGAAGAGTAGTAGTCGTGGTAC 59.408 42.308 0.00 0.00 0.00 3.34
2767 3147 6.461640 AGTAGTCGTGGTACTAAAATGCTTT 58.538 36.000 0.00 0.00 33.85 3.51
2786 3166 7.129457 TGCTTTCTGTAATCTCCATATCTGT 57.871 36.000 0.00 0.00 0.00 3.41
2797 3177 6.994421 TCTCCATATCTGTAGCCATTGTAA 57.006 37.500 0.00 0.00 0.00 2.41
2813 3199 6.083630 CCATTGTAACAACAACTTGGATACG 58.916 40.000 5.37 0.00 33.72 3.06
2814 3200 6.293735 CCATTGTAACAACAACTTGGATACGT 60.294 38.462 5.37 0.00 33.72 3.57
2815 3201 7.095144 CCATTGTAACAACAACTTGGATACGTA 60.095 37.037 0.00 0.00 33.72 3.57
2816 3202 6.768029 TGTAACAACAACTTGGATACGTAC 57.232 37.500 0.00 0.00 42.51 3.67
2817 3203 6.514947 TGTAACAACAACTTGGATACGTACT 58.485 36.000 0.00 0.00 42.51 2.73
2818 3204 5.917541 AACAACAACTTGGATACGTACTG 57.082 39.130 0.00 0.00 42.51 2.74
2819 3205 5.204409 ACAACAACTTGGATACGTACTGA 57.796 39.130 0.00 0.00 42.51 3.41
2820 3206 4.986659 ACAACAACTTGGATACGTACTGAC 59.013 41.667 0.00 0.00 42.51 3.51
2833 3229 4.945246 ACGTACTGACTGAACACATTCTT 58.055 39.130 0.00 0.00 35.69 2.52
2834 3230 4.745125 ACGTACTGACTGAACACATTCTTG 59.255 41.667 0.00 0.00 35.69 3.02
2835 3231 4.745125 CGTACTGACTGAACACATTCTTGT 59.255 41.667 0.00 0.00 35.69 3.16
2844 3240 9.736023 GACTGAACACATTCTTGTTTTCTTTAT 57.264 29.630 6.57 0.00 41.21 1.40
2885 3281 7.386025 ACGTTAAGATTATTTTATAGGGACCGC 59.614 37.037 0.00 0.00 0.00 5.68
3038 3434 7.606349 GGAAGCTTCCAAGACAATATTTTCTT 58.394 34.615 35.71 10.45 46.76 2.52
3249 3645 6.928979 TCTCTCTTGAAGAAGTATAGTCCG 57.071 41.667 0.00 0.00 32.23 4.79
3280 3676 2.023673 TGTCTGTTGTCCTTTTGCAGG 58.976 47.619 0.00 0.00 45.64 4.85
3320 3716 6.416161 CAGTTGATCACTAGTACATGATGTCG 59.584 42.308 0.00 0.00 35.67 4.35
3374 3770 1.620323 GCAATGTCCTTTTGAGGGCTT 59.380 47.619 0.00 0.00 34.00 4.35
3391 3790 7.771183 TGAGGGCTTTTGATGTTGAAATATAC 58.229 34.615 0.00 0.00 0.00 1.47
3392 3791 6.795399 AGGGCTTTTGATGTTGAAATATACG 58.205 36.000 0.00 0.00 0.00 3.06
3393 3792 6.377146 AGGGCTTTTGATGTTGAAATATACGT 59.623 34.615 0.00 0.00 0.00 3.57
3394 3793 7.554835 AGGGCTTTTGATGTTGAAATATACGTA 59.445 33.333 0.00 0.00 0.00 3.57
3395 3794 7.855904 GGGCTTTTGATGTTGAAATATACGTAG 59.144 37.037 0.08 0.00 0.00 3.51
3493 3892 5.049828 ACAAAACCACTGAAGCTTTTATGC 58.950 37.500 0.00 0.00 0.00 3.14
3508 3907 6.323225 AGCTTTTATGCAGGCTAGATTTTCAT 59.677 34.615 0.00 0.00 32.94 2.57
3584 3983 8.442632 TGATGTTTAATGATCATCTGGTCTTC 57.557 34.615 9.06 7.47 38.78 2.87
3664 4065 4.973168 AGGTTAAGCATGTTGAGTCTTGA 58.027 39.130 7.52 0.00 0.00 3.02
3728 4129 7.617935 GCAGAAATCACATTAAAAAGAGCAACG 60.618 37.037 0.00 0.00 0.00 4.10
3742 4143 1.202758 AGCAACGGGATCAGTGTTTCA 60.203 47.619 0.00 0.00 0.00 2.69
3760 4161 6.692681 GTGTTTCATGTATATGATTGTGGCAC 59.307 38.462 11.55 11.55 42.60 5.01
3787 4188 4.219288 GCAAGTGGATTTTCTGATTCAGGT 59.781 41.667 13.59 0.00 31.51 4.00
3859 4262 7.234661 TGTGTACAGGTGAAACAGATGTATA 57.765 36.000 0.00 0.00 39.98 1.47
3889 4292 3.052036 GCGAGAACGTACTGGTGTTAAA 58.948 45.455 0.00 0.00 41.98 1.52
4006 4418 2.980233 GCGTTGGCTCCTGCACTT 60.980 61.111 0.00 0.00 41.91 3.16
4047 4464 1.327303 CAGGTTGTTTTGGCAGGCTA 58.673 50.000 0.00 0.00 0.00 3.93
4070 4487 9.505995 GCTAGTGTTATACTAACAAGAAGAGAC 57.494 37.037 1.53 0.00 41.20 3.36
4086 4503 9.160496 CAAGAAGAGACATTAGCAAAAGTAGAT 57.840 33.333 0.00 0.00 0.00 1.98
4087 4504 8.715191 AGAAGAGACATTAGCAAAAGTAGATG 57.285 34.615 0.00 0.00 0.00 2.90
4088 4505 8.535335 AGAAGAGACATTAGCAAAAGTAGATGA 58.465 33.333 0.00 0.00 0.00 2.92
4089 4506 8.485976 AAGAGACATTAGCAAAAGTAGATGAC 57.514 34.615 0.00 0.00 0.00 3.06
4090 4507 7.044798 AGAGACATTAGCAAAAGTAGATGACC 58.955 38.462 0.00 0.00 0.00 4.02
4091 4508 5.812642 AGACATTAGCAAAAGTAGATGACCG 59.187 40.000 0.00 0.00 0.00 4.79
4092 4509 4.876107 ACATTAGCAAAAGTAGATGACCGG 59.124 41.667 0.00 0.00 0.00 5.28
4093 4510 4.546829 TTAGCAAAAGTAGATGACCGGT 57.453 40.909 6.92 6.92 0.00 5.28
4110 4527 2.052782 GGTTGACCGCAATCCCTAAT 57.947 50.000 0.00 0.00 36.22 1.73
4111 4528 1.676006 GGTTGACCGCAATCCCTAATG 59.324 52.381 0.00 0.00 36.22 1.90
4112 4529 1.065551 GTTGACCGCAATCCCTAATGC 59.934 52.381 0.00 0.00 36.22 3.56
4113 4530 0.546122 TGACCGCAATCCCTAATGCT 59.454 50.000 0.00 0.00 40.39 3.79
4114 4531 1.765904 TGACCGCAATCCCTAATGCTA 59.234 47.619 0.00 0.00 40.39 3.49
4115 4532 2.171659 TGACCGCAATCCCTAATGCTAA 59.828 45.455 0.00 0.00 40.39 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 183 3.235200 ACTCAAGAGGCAGTCTGTTACT 58.765 45.455 0.93 0.00 39.81 2.24
461 470 9.439500 CCCATGAAACTGAAAATTGTATCATTT 57.561 29.630 0.00 0.00 0.00 2.32
463 472 7.043565 GCCCATGAAACTGAAAATTGTATCAT 58.956 34.615 0.00 0.00 0.00 2.45
465 474 5.812127 GGCCCATGAAACTGAAAATTGTATC 59.188 40.000 0.00 0.00 0.00 2.24
470 522 3.647590 ACAGGCCCATGAAACTGAAAATT 59.352 39.130 14.59 0.00 35.08 1.82
529 581 4.626287 GCTCTTGGGATATGAAGGTTGTGA 60.626 45.833 0.00 0.00 0.00 3.58
534 586 2.398588 TCGCTCTTGGGATATGAAGGT 58.601 47.619 0.00 0.00 0.00 3.50
570 622 5.163683 GCACATCCTGCATATATCATTCACC 60.164 44.000 0.00 0.00 46.29 4.02
586 644 5.820404 TCTATGATCTTGATGCACATCCT 57.180 39.130 8.11 0.00 37.02 3.24
606 664 9.730705 CATTCACCCAATCATATATGTACTTCT 57.269 33.333 12.42 0.00 0.00 2.85
607 665 9.725019 TCATTCACCCAATCATATATGTACTTC 57.275 33.333 12.42 0.00 0.00 3.01
617 675 9.127277 CATGCATATATCATTCACCCAATCATA 57.873 33.333 0.00 0.00 0.00 2.15
618 676 7.837187 TCATGCATATATCATTCACCCAATCAT 59.163 33.333 0.00 0.00 0.00 2.45
620 678 7.634671 TCATGCATATATCATTCACCCAATC 57.365 36.000 0.00 0.00 0.00 2.67
621 679 7.618117 ACATCATGCATATATCATTCACCCAAT 59.382 33.333 0.00 0.00 0.00 3.16
623 681 6.376018 CACATCATGCATATATCATTCACCCA 59.624 38.462 0.00 0.00 0.00 4.51
624 682 6.792326 CACATCATGCATATATCATTCACCC 58.208 40.000 0.00 0.00 0.00 4.61
640 698 8.947115 ACTTATATGATCTTGATGCACATCATG 58.053 33.333 13.77 15.28 46.12 3.07
643 701 9.428097 TGTACTTATATGATCTTGATGCACATC 57.572 33.333 3.61 3.61 38.29 3.06
662 720 9.271828 CAGTTGTGCCAATCATATATGTACTTA 57.728 33.333 12.42 0.00 0.00 2.24
664 722 7.508687 TCAGTTGTGCCAATCATATATGTACT 58.491 34.615 12.42 0.00 0.00 2.73
665 723 7.728847 TCAGTTGTGCCAATCATATATGTAC 57.271 36.000 12.42 4.86 0.00 2.90
691 791 6.998074 CAGAGCCATATATTCCAGTGGTTAAA 59.002 38.462 9.54 0.00 34.23 1.52
836 978 1.370051 GGAGCGTGCACGTTTTTCC 60.370 57.895 36.80 30.54 42.22 3.13
1173 1315 1.130749 CTACGAGGACTCACCGTCTTG 59.869 57.143 0.00 0.00 44.74 3.02
1210 1352 1.261238 GCTAGTCTGTCCACTGCCCT 61.261 60.000 0.00 0.00 0.00 5.19
1345 1496 0.959372 CCCAGCTCAGCTTTCACCTG 60.959 60.000 0.00 0.00 36.40 4.00
1347 1498 1.073897 ACCCAGCTCAGCTTTCACC 59.926 57.895 0.00 0.00 36.40 4.02
1350 1501 1.163554 CTTCACCCAGCTCAGCTTTC 58.836 55.000 0.00 0.00 36.40 2.62
1592 1746 2.677875 GCACAAAGCTCCTGGGGG 60.678 66.667 0.00 0.00 41.15 5.40
1602 1756 0.320771 ACGTAGGGCTGAGCACAAAG 60.321 55.000 10.32 1.07 32.33 2.77
1606 1760 0.320421 TTCAACGTAGGGCTGAGCAC 60.320 55.000 6.82 1.02 0.00 4.40
1613 1767 1.544691 TCTCTCTGTTCAACGTAGGGC 59.455 52.381 0.00 0.00 0.00 5.19
1620 1774 4.324936 GCGTCAGTTATCTCTCTGTTCAAC 59.675 45.833 0.00 0.00 33.89 3.18
1621 1775 4.022329 TGCGTCAGTTATCTCTCTGTTCAA 60.022 41.667 0.00 0.00 33.89 2.69
1628 1782 6.697455 TGAACATTATGCGTCAGTTATCTCTC 59.303 38.462 0.00 0.00 0.00 3.20
1641 1795 5.809464 TGACATTTAGCTGAACATTATGCG 58.191 37.500 0.00 0.00 0.00 4.73
1665 1819 4.083271 GCGAAACTTCCTTATTCTTGCTGT 60.083 41.667 0.00 0.00 0.00 4.40
1672 1826 2.747446 TGGCAGCGAAACTTCCTTATTC 59.253 45.455 0.00 0.00 32.01 1.75
1675 1829 2.489938 ATGGCAGCGAAACTTCCTTA 57.510 45.000 0.00 0.00 32.01 2.69
1676 1830 1.620822 AATGGCAGCGAAACTTCCTT 58.379 45.000 0.00 0.00 32.01 3.36
1677 1831 1.620822 AAATGGCAGCGAAACTTCCT 58.379 45.000 0.00 0.00 32.01 3.36
1678 1832 2.061028 CAAAATGGCAGCGAAACTTCC 58.939 47.619 0.00 0.00 31.26 3.46
1706 1863 6.483640 GGAAGGTCGCAATAGACTAATTTCAT 59.516 38.462 0.00 0.00 40.76 2.57
1707 1864 5.815740 GGAAGGTCGCAATAGACTAATTTCA 59.184 40.000 0.00 0.00 40.76 2.69
1708 1865 5.815740 TGGAAGGTCGCAATAGACTAATTTC 59.184 40.000 0.00 0.00 40.76 2.17
1709 1866 5.741011 TGGAAGGTCGCAATAGACTAATTT 58.259 37.500 0.00 0.00 40.76 1.82
1710 1867 5.128827 TCTGGAAGGTCGCAATAGACTAATT 59.871 40.000 0.00 0.00 40.76 1.40
1711 1868 4.649674 TCTGGAAGGTCGCAATAGACTAAT 59.350 41.667 0.00 0.00 40.76 1.73
1712 1869 4.021229 TCTGGAAGGTCGCAATAGACTAA 58.979 43.478 0.00 0.00 40.76 2.24
1713 1870 3.628008 TCTGGAAGGTCGCAATAGACTA 58.372 45.455 0.00 0.00 40.76 2.59
1714 1871 2.457598 TCTGGAAGGTCGCAATAGACT 58.542 47.619 0.00 0.00 40.76 3.24
1715 1872 2.961526 TCTGGAAGGTCGCAATAGAC 57.038 50.000 0.00 0.00 40.25 2.59
1716 1873 4.588951 ACATATCTGGAAGGTCGCAATAGA 59.411 41.667 0.00 0.00 0.00 1.98
1717 1874 4.687948 CACATATCTGGAAGGTCGCAATAG 59.312 45.833 0.00 0.00 0.00 1.73
1718 1875 4.100963 ACACATATCTGGAAGGTCGCAATA 59.899 41.667 0.00 0.00 0.00 1.90
1719 1876 3.118261 ACACATATCTGGAAGGTCGCAAT 60.118 43.478 0.00 0.00 0.00 3.56
1720 1877 2.236146 ACACATATCTGGAAGGTCGCAA 59.764 45.455 0.00 0.00 0.00 4.85
1721 1878 1.831106 ACACATATCTGGAAGGTCGCA 59.169 47.619 0.00 0.00 0.00 5.10
1722 1879 2.159099 TGACACATATCTGGAAGGTCGC 60.159 50.000 0.00 0.00 0.00 5.19
1723 1880 3.801114 TGACACATATCTGGAAGGTCG 57.199 47.619 0.00 0.00 0.00 4.79
1724 1881 6.203723 GCTAAATGACACATATCTGGAAGGTC 59.796 42.308 0.00 0.00 0.00 3.85
1725 1882 6.058183 GCTAAATGACACATATCTGGAAGGT 58.942 40.000 0.00 0.00 0.00 3.50
1726 1883 6.294473 AGCTAAATGACACATATCTGGAAGG 58.706 40.000 0.00 0.00 0.00 3.46
1727 1884 8.147058 AGTAGCTAAATGACACATATCTGGAAG 58.853 37.037 0.00 0.00 0.00 3.46
1728 1885 8.023021 AGTAGCTAAATGACACATATCTGGAA 57.977 34.615 0.00 0.00 0.00 3.53
1729 1886 7.603180 AGTAGCTAAATGACACATATCTGGA 57.397 36.000 0.00 0.00 0.00 3.86
1730 1887 8.797438 TCTAGTAGCTAAATGACACATATCTGG 58.203 37.037 0.00 0.00 0.00 3.86
1739 1896 7.232330 AGCATCAGATCTAGTAGCTAAATGACA 59.768 37.037 8.77 0.00 0.00 3.58
1749 1906 7.654923 TGCAATTGTAAGCATCAGATCTAGTAG 59.345 37.037 7.40 0.00 35.51 2.57
1758 1915 6.025896 CAGTTAGTGCAATTGTAAGCATCAG 58.974 40.000 7.40 0.00 43.44 2.90
1776 1933 7.988737 TGGATCATGCTTATTTGTTCAGTTAG 58.011 34.615 0.00 0.00 0.00 2.34
1779 1936 7.262772 CAATGGATCATGCTTATTTGTTCAGT 58.737 34.615 0.00 0.00 0.00 3.41
1780 1937 6.200286 GCAATGGATCATGCTTATTTGTTCAG 59.800 38.462 9.39 0.00 0.00 3.02
1788 1945 4.891168 TGAACTGCAATGGATCATGCTTAT 59.109 37.500 15.52 4.76 0.00 1.73
1826 1983 1.243342 TTCCTTCGCAATGGGCTGTG 61.243 55.000 0.00 0.00 41.67 3.66
1830 1987 3.733443 ATTATTTCCTTCGCAATGGGC 57.267 42.857 0.00 0.00 39.90 5.36
1834 1991 7.715657 TCTATTGCAATTATTTCCTTCGCAAT 58.284 30.769 18.75 12.96 46.83 3.56
1835 1992 7.094508 TCTATTGCAATTATTTCCTTCGCAA 57.905 32.000 18.75 0.00 41.58 4.85
1836 1993 6.691754 TCTATTGCAATTATTTCCTTCGCA 57.308 33.333 18.75 0.00 0.00 5.10
1837 1994 6.803807 GGATCTATTGCAATTATTTCCTTCGC 59.196 38.462 18.75 0.00 0.00 4.70
1838 1995 7.874940 TGGATCTATTGCAATTATTTCCTTCG 58.125 34.615 18.75 0.00 0.00 3.79
1844 2001 8.603181 GCGTTTTTGGATCTATTGCAATTATTT 58.397 29.630 18.75 0.27 35.41 1.40
1845 2002 7.043458 CGCGTTTTTGGATCTATTGCAATTATT 60.043 33.333 18.75 2.19 35.41 1.40
1846 2003 6.417635 CGCGTTTTTGGATCTATTGCAATTAT 59.582 34.615 18.75 11.72 35.41 1.28
1847 2004 5.741510 CGCGTTTTTGGATCTATTGCAATTA 59.258 36.000 18.75 6.94 35.41 1.40
1848 2005 4.562394 CGCGTTTTTGGATCTATTGCAATT 59.438 37.500 18.75 0.00 35.41 2.32
1865 2037 3.810941 TGTCATAAAGAAGGAACGCGTTT 59.189 39.130 27.32 10.61 0.00 3.60
1868 2040 3.725010 GCTTGTCATAAAGAAGGAACGCG 60.725 47.826 3.53 3.53 0.00 6.01
1870 2042 3.751175 TGGCTTGTCATAAAGAAGGAACG 59.249 43.478 0.00 0.00 0.00 3.95
1872 2044 5.336690 GCAATGGCTTGTCATAAAGAAGGAA 60.337 40.000 0.00 0.00 36.96 3.36
1908 2080 7.645058 AAGTTCTGATGGAGTTTGAAGAAAA 57.355 32.000 0.00 0.00 0.00 2.29
1921 2093 3.065371 GCCGAATGGTAAAGTTCTGATGG 59.935 47.826 0.00 0.00 37.67 3.51
1934 2106 5.650266 TGTTCAACTTAATATGCCGAATGGT 59.350 36.000 0.00 0.00 37.67 3.55
1935 2107 6.130298 TGTTCAACTTAATATGCCGAATGG 57.870 37.500 0.00 0.00 38.77 3.16
1936 2108 6.857964 GGATGTTCAACTTAATATGCCGAATG 59.142 38.462 0.00 0.00 0.00 2.67
1941 2185 8.196771 TGATTTGGATGTTCAACTTAATATGCC 58.803 33.333 0.00 0.00 0.00 4.40
1962 2206 5.687166 AATGGGCTGATGAACAATGATTT 57.313 34.783 0.00 0.00 0.00 2.17
1977 2221 2.291282 TGGATTAACGGACAAATGGGCT 60.291 45.455 0.00 0.00 0.00 5.19
2011 2255 8.194104 TGCAAATTGAGTAACACAAACATTACT 58.806 29.630 0.00 0.00 42.88 2.24
2056 2312 4.958581 ACCCATCATTTTCTTCCATCTTCC 59.041 41.667 0.00 0.00 0.00 3.46
2088 2344 6.316140 AGCAGTACTAAATCAATGAATCGCAA 59.684 34.615 0.00 0.00 0.00 4.85
2093 2349 8.616076 GCAGTTAGCAGTACTAAATCAATGAAT 58.384 33.333 0.00 0.00 42.50 2.57
2114 2370 8.680903 CAGATAACCAGATAAAGAAATGCAGTT 58.319 33.333 0.00 0.00 0.00 3.16
2115 2371 7.284034 CCAGATAACCAGATAAAGAAATGCAGT 59.716 37.037 0.00 0.00 0.00 4.40
2116 2372 7.284034 ACCAGATAACCAGATAAAGAAATGCAG 59.716 37.037 0.00 0.00 0.00 4.41
2119 2375 7.917505 GCAACCAGATAACCAGATAAAGAAATG 59.082 37.037 0.00 0.00 0.00 2.32
2120 2376 7.201732 CGCAACCAGATAACCAGATAAAGAAAT 60.202 37.037 0.00 0.00 0.00 2.17
2121 2377 6.093495 CGCAACCAGATAACCAGATAAAGAAA 59.907 38.462 0.00 0.00 0.00 2.52
2122 2378 5.584649 CGCAACCAGATAACCAGATAAAGAA 59.415 40.000 0.00 0.00 0.00 2.52
2123 2379 5.116180 CGCAACCAGATAACCAGATAAAGA 58.884 41.667 0.00 0.00 0.00 2.52
2124 2380 4.260784 GCGCAACCAGATAACCAGATAAAG 60.261 45.833 0.30 0.00 0.00 1.85
2128 2384 1.210478 AGCGCAACCAGATAACCAGAT 59.790 47.619 11.47 0.00 0.00 2.90
2129 2385 0.613260 AGCGCAACCAGATAACCAGA 59.387 50.000 11.47 0.00 0.00 3.86
2130 2386 2.309528 TAGCGCAACCAGATAACCAG 57.690 50.000 11.47 0.00 0.00 4.00
2131 2387 2.027561 AGTTAGCGCAACCAGATAACCA 60.028 45.455 11.47 0.00 40.22 3.67
2132 2388 2.351726 CAGTTAGCGCAACCAGATAACC 59.648 50.000 11.47 0.00 40.22 2.85
2146 2507 6.846350 AGTATGTGAAAGAAATGCAGTTAGC 58.154 36.000 0.00 0.00 45.96 3.09
2164 2525 7.441760 TGCATGCAATTCAAAGAAAAAGTATGT 59.558 29.630 20.30 0.00 0.00 2.29
2196 2557 6.049955 TCAGGTGAATTAGATTTCGAAGGT 57.950 37.500 0.00 0.00 0.00 3.50
2276 2637 1.597663 CGACAAACTTCACACCAGTCC 59.402 52.381 0.00 0.00 0.00 3.85
2387 2748 6.206634 TCAGTAAAGGAACCAAAGCATAGTTG 59.793 38.462 0.00 0.00 0.00 3.16
2395 2756 7.940850 TCAATTCTTCAGTAAAGGAACCAAAG 58.059 34.615 0.00 0.00 35.54 2.77
2407 2768 9.066892 GCATAAATACCCATCAATTCTTCAGTA 57.933 33.333 0.00 0.00 0.00 2.74
2483 2844 4.894784 CAGGTTTAGTTTAGCTGTCCAGA 58.105 43.478 0.00 0.00 36.60 3.86
2495 2856 8.537016 TGATACTGCACTTATACAGGTTTAGTT 58.463 33.333 0.00 0.00 38.25 2.24
2501 2862 5.163311 TGCATGATACTGCACTTATACAGGT 60.163 40.000 0.00 0.00 46.76 4.00
2523 2892 4.938226 AGTATTCTTTAGTCTGGCAAGTGC 59.062 41.667 0.00 0.00 41.14 4.40
2665 3039 6.806120 CACAAATGCACATATGACATCAAG 57.194 37.500 10.38 8.41 0.00 3.02
2736 3110 7.602517 TTTAGTACCACGACTACTACTCTTC 57.397 40.000 0.00 0.00 31.58 2.87
2750 3124 8.947115 AGATTACAGAAAGCATTTTAGTACCAC 58.053 33.333 0.00 0.00 39.27 4.16
2767 3147 6.314917 TGGCTACAGATATGGAGATTACAGA 58.685 40.000 3.00 0.00 0.00 3.41
2786 3166 5.133941 TCCAAGTTGTTGTTACAATGGCTA 58.866 37.500 9.17 0.00 45.41 3.93
2797 3177 4.986659 GTCAGTACGTATCCAAGTTGTTGT 59.013 41.667 0.00 0.00 30.95 3.32
2813 3199 6.604735 AACAAGAATGTGTTCAGTCAGTAC 57.395 37.500 0.00 0.00 40.55 2.73
2814 3200 7.624360 AAAACAAGAATGTGTTCAGTCAGTA 57.376 32.000 0.00 0.00 40.86 2.74
2815 3201 6.515272 AAAACAAGAATGTGTTCAGTCAGT 57.485 33.333 0.00 0.00 40.86 3.41
2859 3255 7.386025 GCGGTCCCTATAAAATAATCTTAACGT 59.614 37.037 0.00 0.00 0.00 3.99
2860 3256 7.385752 TGCGGTCCCTATAAAATAATCTTAACG 59.614 37.037 0.00 0.00 0.00 3.18
2866 3262 7.390718 AGTTGATGCGGTCCCTATAAAATAATC 59.609 37.037 0.00 0.00 0.00 1.75
2868 3264 6.597562 AGTTGATGCGGTCCCTATAAAATAA 58.402 36.000 0.00 0.00 0.00 1.40
2870 3266 5.048846 AGTTGATGCGGTCCCTATAAAAT 57.951 39.130 0.00 0.00 0.00 1.82
2871 3267 4.497291 AGTTGATGCGGTCCCTATAAAA 57.503 40.909 0.00 0.00 0.00 1.52
2875 3271 2.026262 ACAAAGTTGATGCGGTCCCTAT 60.026 45.455 0.00 0.00 0.00 2.57
3038 3434 2.158769 AGACAGAGCAACCACATTGTCA 60.159 45.455 5.38 0.00 40.77 3.58
3249 3645 6.518208 AGGACAACAGACATTCTAGTACTC 57.482 41.667 0.00 0.00 0.00 2.59
3287 3683 7.371159 TGTACTAGTGATCAACTGCTATATGC 58.629 38.462 5.39 0.00 40.26 3.14
3352 3748 1.203287 GCCCTCAAAAGGACATTGCTC 59.797 52.381 0.00 0.00 46.67 4.26
3493 3892 7.630242 TTAAGTTGGATGAAAATCTAGCCTG 57.370 36.000 0.00 0.00 0.00 4.85
3584 3983 0.687354 AGTAGTGTCAGGGGCAACAG 59.313 55.000 0.00 0.00 39.74 3.16
3638 4039 7.764443 TCAAGACTCAACATGCTTAACCTATAC 59.236 37.037 0.00 0.00 0.00 1.47
3648 4049 2.157738 GGCTTCAAGACTCAACATGCT 58.842 47.619 0.00 0.00 0.00 3.79
3728 4129 8.509690 CAATCATATACATGAAACACTGATCCC 58.490 37.037 0.00 0.00 44.27 3.85
3742 4143 4.276678 GCACAGTGCCACAATCATATACAT 59.723 41.667 15.27 0.00 37.42 2.29
3760 4161 4.778534 ATCAGAAAATCCACTTGCACAG 57.221 40.909 0.00 0.00 0.00 3.66
3787 4188 2.104792 AGCTCAGTGTTCTAGCCAAACA 59.895 45.455 0.00 0.00 36.92 2.83
3802 4203 2.010497 TCGTAGTCACTAGCAGCTCAG 58.990 52.381 0.00 0.00 0.00 3.35
3859 4262 4.471726 CGTTCTCGCGGCCGTAGT 62.472 66.667 28.70 0.00 35.54 2.73
3930 4342 2.319844 AGGAACCTCCTTGCAAAAAGG 58.680 47.619 20.15 20.15 46.91 3.11
3973 4385 3.120408 CCAACGCTCAAGAGAATCACAAG 60.120 47.826 0.32 0.00 37.82 3.16
3976 4388 1.129437 GCCAACGCTCAAGAGAATCAC 59.871 52.381 0.32 0.00 37.82 3.06
4006 4418 3.170362 CCCAACCCAAGCCAGAGA 58.830 61.111 0.00 0.00 0.00 3.10
4032 4449 2.065899 ACACTAGCCTGCCAAAACAA 57.934 45.000 0.00 0.00 0.00 2.83
4070 4487 4.876107 ACCGGTCATCTACTTTTGCTAATG 59.124 41.667 0.00 0.00 0.00 1.90
4091 4508 1.676006 CATTAGGGATTGCGGTCAACC 59.324 52.381 0.00 0.00 34.60 3.77
4092 4509 1.065551 GCATTAGGGATTGCGGTCAAC 59.934 52.381 0.00 0.00 34.60 3.18
4093 4510 1.064758 AGCATTAGGGATTGCGGTCAA 60.065 47.619 0.00 0.00 43.61 3.18
4111 4528 3.134458 ACACTCAAGAGTTGCAGTTAGC 58.866 45.455 0.00 0.00 40.20 3.09
4112 4529 6.480320 AGTTAACACTCAAGAGTTGCAGTTAG 59.520 38.462 8.61 0.00 40.20 2.34
4113 4530 6.346096 AGTTAACACTCAAGAGTTGCAGTTA 58.654 36.000 8.61 3.79 40.20 2.24
4114 4531 5.186198 AGTTAACACTCAAGAGTTGCAGTT 58.814 37.500 8.61 4.70 40.20 3.16
4115 4532 4.770795 AGTTAACACTCAAGAGTTGCAGT 58.229 39.130 8.61 0.00 40.20 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.