Multiple sequence alignment - TraesCS5D01G412000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G412000 chr5D 100.000 3143 0 0 1 3143 475381096 475384238 0.000000e+00 5805.0
1 TraesCS5D01G412000 chr5A 89.855 2612 118 46 230 2732 594769959 594772532 0.000000e+00 3219.0
2 TraesCS5D01G412000 chr5A 88.435 294 17 8 2088 2376 486468300 486468019 3.880000e-89 339.0
3 TraesCS5D01G412000 chr5A 86.036 222 25 6 93 313 594769755 594769971 1.880000e-57 233.0
4 TraesCS5D01G412000 chr5A 84.977 213 9 13 2288 2500 131302185 131301996 8.890000e-46 195.0
5 TraesCS5D01G412000 chr5B 95.513 1716 52 8 690 2381 582773187 582774901 0.000000e+00 2719.0
6 TraesCS5D01G412000 chr5B 92.674 546 18 8 439 969 582772432 582772970 0.000000e+00 767.0
7 TraesCS5D01G412000 chr5B 93.781 402 17 3 2381 2774 582774938 582775339 5.800000e-167 597.0
8 TraesCS5D01G412000 chr5B 79.612 206 28 8 2876 3078 582775358 582775552 5.470000e-28 135.0
9 TraesCS5D01G412000 chr1A 86.199 413 25 14 2088 2497 119396887 119397270 4.850000e-113 418.0
10 TraesCS5D01G412000 chr6A 85.545 422 26 12 2087 2497 217309505 217309902 2.920000e-110 409.0
11 TraesCS5D01G412000 chr6A 91.333 150 13 0 1244 1393 500083776 500083627 4.110000e-49 206.0
12 TraesCS5D01G412000 chr6A 87.135 171 18 1 2087 2257 407124940 407125106 1.150000e-44 191.0
13 TraesCS5D01G412000 chr6A 83.784 185 12 10 2301 2485 407125397 407125563 3.240000e-35 159.0
14 TraesCS5D01G412000 chr2A 87.324 284 12 14 2218 2497 60653047 60652784 1.420000e-78 303.0
15 TraesCS5D01G412000 chr2A 88.824 170 16 3 1224 1393 35975998 35976164 4.110000e-49 206.0
16 TraesCS5D01G412000 chr6D 91.333 150 13 0 1244 1393 358326157 358326008 4.110000e-49 206.0
17 TraesCS5D01G412000 chr2D 88.824 170 16 2 1224 1393 32763253 32763419 4.110000e-49 206.0
18 TraesCS5D01G412000 chr2B 88.824 170 16 2 1224 1393 54440321 54440487 4.110000e-49 206.0
19 TraesCS5D01G412000 chr2B 100.000 30 0 0 3101 3130 503221375 503221346 4.380000e-04 56.5
20 TraesCS5D01G412000 chr7A 85.484 186 26 1 1210 1395 177136131 177136315 3.200000e-45 193.0
21 TraesCS5D01G412000 chr7D 85.955 178 25 0 1218 1395 174992588 174992765 1.150000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G412000 chr5D 475381096 475384238 3142 False 5805.0 5805 100.0000 1 3143 1 chr5D.!!$F1 3142
1 TraesCS5D01G412000 chr5A 594769755 594772532 2777 False 1726.0 3219 87.9455 93 2732 2 chr5A.!!$F1 2639
2 TraesCS5D01G412000 chr5B 582772432 582775552 3120 False 1054.5 2719 90.3950 439 3078 4 chr5B.!!$F1 2639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.034767 TGGGAGTAGACGACCGACAT 60.035 55.0 0.0 0.0 0.0 3.06 F
119 120 0.100503 GCCGTGATATTGTTGCCCAC 59.899 55.0 0.0 0.0 0.0 4.61 F
367 440 0.895530 TCGAGAAATTCTGGCTCCGT 59.104 50.0 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1824 2485 1.945354 ATGGCGACGGTGAAGACGAT 61.945 55.000 0.00 0.0 34.93 3.73 R
2049 2710 2.441164 ATCTCCTGCGAGCCGAGT 60.441 61.111 8.48 0.0 35.94 4.18 R
2194 2855 1.751351 TGAGCTGAGCTACGCTATTGT 59.249 47.619 7.08 0.0 39.88 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.408333 GGTTGTGTTGCACAGAGCT 58.592 52.632 2.17 0.00 45.39 4.09
19 20 0.308993 GGTTGTGTTGCACAGAGCTC 59.691 55.000 5.27 5.27 45.39 4.09
20 21 1.303309 GTTGTGTTGCACAGAGCTCT 58.697 50.000 11.45 11.45 45.39 4.09
21 22 1.262683 GTTGTGTTGCACAGAGCTCTC 59.737 52.381 14.96 3.26 45.39 3.20
22 23 0.598419 TGTGTTGCACAGAGCTCTCG 60.598 55.000 14.96 12.19 45.94 4.04
23 24 1.005748 TGTTGCACAGAGCTCTCGG 60.006 57.895 14.96 10.10 45.94 4.63
24 25 1.739562 GTTGCACAGAGCTCTCGGG 60.740 63.158 14.96 11.99 45.94 5.14
25 26 2.947532 TTGCACAGAGCTCTCGGGG 61.948 63.158 14.96 6.05 45.94 5.73
26 27 4.154347 GCACAGAGCTCTCGGGGG 62.154 72.222 14.96 5.20 41.15 5.40
27 28 4.154347 CACAGAGCTCTCGGGGGC 62.154 72.222 14.96 0.00 34.09 5.80
28 29 4.704103 ACAGAGCTCTCGGGGGCA 62.704 66.667 14.96 0.00 34.09 5.36
29 30 4.154347 CAGAGCTCTCGGGGGCAC 62.154 72.222 14.96 1.70 34.09 5.01
44 45 2.634815 GGCACCATGAGATGAGTGAT 57.365 50.000 0.00 0.00 35.09 3.06
45 46 2.219458 GGCACCATGAGATGAGTGATG 58.781 52.381 0.00 0.00 35.09 3.07
46 47 2.421107 GGCACCATGAGATGAGTGATGT 60.421 50.000 0.00 0.00 35.09 3.06
47 48 2.612672 GCACCATGAGATGAGTGATGTG 59.387 50.000 0.00 0.00 35.09 3.21
48 49 3.203716 CACCATGAGATGAGTGATGTGG 58.796 50.000 0.00 0.00 35.09 4.17
49 50 2.842496 ACCATGAGATGAGTGATGTGGT 59.158 45.455 0.00 0.00 34.10 4.16
50 51 4.033009 ACCATGAGATGAGTGATGTGGTA 58.967 43.478 0.00 0.00 36.98 3.25
51 52 4.141846 ACCATGAGATGAGTGATGTGGTAC 60.142 45.833 0.00 0.00 36.98 3.34
52 53 4.141869 CCATGAGATGAGTGATGTGGTACA 60.142 45.833 0.00 0.00 0.00 2.90
53 54 5.454329 CCATGAGATGAGTGATGTGGTACAT 60.454 44.000 0.00 0.00 44.52 2.29
63 64 3.634397 ATGTGGTACATCACTTGGGAG 57.366 47.619 0.00 0.00 44.52 4.30
64 65 2.334977 TGTGGTACATCACTTGGGAGT 58.665 47.619 0.00 0.00 44.52 3.85
65 66 3.512496 TGTGGTACATCACTTGGGAGTA 58.488 45.455 0.00 0.00 44.52 2.59
66 67 3.513912 TGTGGTACATCACTTGGGAGTAG 59.486 47.826 0.00 0.00 44.52 2.57
67 68 3.767673 GTGGTACATCACTTGGGAGTAGA 59.232 47.826 0.00 0.00 44.52 2.59
68 69 3.767673 TGGTACATCACTTGGGAGTAGAC 59.232 47.826 0.00 0.00 33.90 2.59
69 70 3.181489 GGTACATCACTTGGGAGTAGACG 60.181 52.174 0.00 0.00 33.90 4.18
70 71 2.803956 ACATCACTTGGGAGTAGACGA 58.196 47.619 0.00 0.00 33.90 4.20
71 72 2.492484 ACATCACTTGGGAGTAGACGAC 59.508 50.000 0.00 0.00 33.90 4.34
72 73 1.542492 TCACTTGGGAGTAGACGACC 58.458 55.000 0.00 0.00 33.90 4.79
73 74 0.170561 CACTTGGGAGTAGACGACCG 59.829 60.000 0.00 0.00 33.90 4.79
74 75 0.037303 ACTTGGGAGTAGACGACCGA 59.963 55.000 0.00 0.00 33.32 4.69
75 76 0.450983 CTTGGGAGTAGACGACCGAC 59.549 60.000 0.00 0.00 0.00 4.79
76 77 0.250858 TTGGGAGTAGACGACCGACA 60.251 55.000 0.00 0.00 0.00 4.35
77 78 0.034767 TGGGAGTAGACGACCGACAT 60.035 55.000 0.00 0.00 0.00 3.06
78 79 0.381089 GGGAGTAGACGACCGACATG 59.619 60.000 0.00 0.00 0.00 3.21
79 80 1.376543 GGAGTAGACGACCGACATGA 58.623 55.000 0.00 0.00 0.00 3.07
80 81 1.063764 GGAGTAGACGACCGACATGAC 59.936 57.143 0.00 0.00 0.00 3.06
81 82 0.725686 AGTAGACGACCGACATGACG 59.274 55.000 10.68 10.68 0.00 4.35
82 83 0.723414 GTAGACGACCGACATGACGA 59.277 55.000 19.00 0.00 35.09 4.20
83 84 1.004595 TAGACGACCGACATGACGAG 58.995 55.000 19.00 11.12 35.09 4.18
84 85 1.868251 GACGACCGACATGACGAGC 60.868 63.158 19.00 9.00 35.09 5.03
85 86 2.944557 CGACCGACATGACGAGCG 60.945 66.667 19.00 16.29 35.09 5.03
86 87 2.178521 GACCGACATGACGAGCGT 59.821 61.111 19.00 8.30 35.09 5.07
87 88 1.443872 GACCGACATGACGAGCGTT 60.444 57.895 19.00 0.00 35.09 4.84
88 89 1.674611 GACCGACATGACGAGCGTTG 61.675 60.000 19.00 3.63 35.09 4.10
89 90 1.733041 CCGACATGACGAGCGTTGT 60.733 57.895 19.00 0.00 35.09 3.32
90 91 1.412226 CGACATGACGAGCGTTGTG 59.588 57.895 12.27 6.17 35.09 3.33
91 92 1.130613 GACATGACGAGCGTTGTGC 59.869 57.895 0.00 0.00 46.98 4.57
108 109 1.522806 GCGACCAATGGCCGTGATA 60.523 57.895 10.13 0.00 0.00 2.15
118 119 1.034838 GGCCGTGATATTGTTGCCCA 61.035 55.000 0.00 0.00 32.74 5.36
119 120 0.100503 GCCGTGATATTGTTGCCCAC 59.899 55.000 0.00 0.00 0.00 4.61
158 159 7.214467 TGTCTTAAAGGAATTGAATGTCCAC 57.786 36.000 8.41 0.30 36.28 4.02
166 167 4.142513 GGAATTGAATGTCCACTCTCTTGC 60.143 45.833 0.00 0.00 33.79 4.01
169 170 3.603532 TGAATGTCCACTCTCTTGCATC 58.396 45.455 0.00 0.00 0.00 3.91
174 175 4.089361 TGTCCACTCTCTTGCATCTCTTA 58.911 43.478 0.00 0.00 0.00 2.10
183 184 7.118971 ACTCTCTTGCATCTCTTATTTGTTGTC 59.881 37.037 0.00 0.00 0.00 3.18
184 185 7.164122 TCTCTTGCATCTCTTATTTGTTGTCT 58.836 34.615 0.00 0.00 0.00 3.41
185 186 7.332926 TCTCTTGCATCTCTTATTTGTTGTCTC 59.667 37.037 0.00 0.00 0.00 3.36
191 192 8.887717 GCATCTCTTATTTGTTGTCTCAACTAT 58.112 33.333 12.66 9.05 0.00 2.12
201 202 7.372451 TGTTGTCTCAACTATATTTTTCCCG 57.628 36.000 12.66 0.00 0.00 5.14
202 203 6.938030 TGTTGTCTCAACTATATTTTTCCCGT 59.062 34.615 12.66 0.00 0.00 5.28
203 204 8.095792 TGTTGTCTCAACTATATTTTTCCCGTA 58.904 33.333 12.66 0.00 0.00 4.02
204 205 8.601476 GTTGTCTCAACTATATTTTTCCCGTAG 58.399 37.037 5.52 0.00 0.00 3.51
216 217 6.806388 TTTTTCCCGTAGTTCCTTTGTATC 57.194 37.500 0.00 0.00 0.00 2.24
228 229 4.912586 TCCTTTGTATCACCCGAAATCAA 58.087 39.130 0.00 0.00 0.00 2.57
234 235 5.496556 TGTATCACCCGAAATCAATGAGTT 58.503 37.500 0.00 0.00 0.00 3.01
243 244 5.335897 CCGAAATCAATGAGTTGGTGATGTT 60.336 40.000 0.00 0.00 35.99 2.71
309 379 8.293867 TGTTGATTTTTATTTTCGAGGTAGTGG 58.706 33.333 0.00 0.00 0.00 4.00
331 401 6.016943 GTGGTATTTGCCGTTATTTATAGCCA 60.017 38.462 0.00 0.00 0.00 4.75
336 406 6.854496 TTGCCGTTATTTATAGCCACTTAG 57.146 37.500 0.00 0.00 0.00 2.18
349 422 3.753797 AGCCACTTAGTTTTAGCAGCTTC 59.246 43.478 0.00 0.00 0.00 3.86
352 425 4.092091 CCACTTAGTTTTAGCAGCTTCGAG 59.908 45.833 0.00 0.00 0.00 4.04
353 426 4.923871 CACTTAGTTTTAGCAGCTTCGAGA 59.076 41.667 0.00 0.00 0.00 4.04
364 437 2.351111 CAGCTTCGAGAAATTCTGGCTC 59.649 50.000 0.00 0.00 0.00 4.70
365 438 1.668237 GCTTCGAGAAATTCTGGCTCC 59.332 52.381 0.00 0.00 0.00 4.70
366 439 1.929836 CTTCGAGAAATTCTGGCTCCG 59.070 52.381 0.00 0.00 0.00 4.63
367 440 0.895530 TCGAGAAATTCTGGCTCCGT 59.104 50.000 0.00 0.00 0.00 4.69
369 442 1.404181 CGAGAAATTCTGGCTCCGTCA 60.404 52.381 0.00 0.00 0.00 4.35
377 450 2.031163 GGCTCCGTCACTGTTGCT 59.969 61.111 0.00 0.00 0.00 3.91
383 461 1.013596 CCGTCACTGTTGCTCAAACA 58.986 50.000 0.00 0.00 46.66 2.83
391 469 2.980586 TGTTGCTCAAACAATCGTTCG 58.019 42.857 0.00 0.00 45.85 3.95
394 472 1.191425 TGCTCAAACAATCGTTCGACG 59.809 47.619 0.00 0.00 44.19 5.12
421 501 7.658261 TGTGTATAATCCATAAAGAGAGGACG 58.342 38.462 0.00 0.00 33.57 4.79
427 507 3.319405 TCCATAAAGAGAGGACGCTGATC 59.681 47.826 0.00 0.00 0.00 2.92
497 577 1.466167 GCATGTGTAAGTGAGCTGGTG 59.534 52.381 0.00 0.00 0.00 4.17
499 579 3.141398 CATGTGTAAGTGAGCTGGTGTT 58.859 45.455 0.00 0.00 0.00 3.32
500 580 3.275617 TGTGTAAGTGAGCTGGTGTTT 57.724 42.857 0.00 0.00 0.00 2.83
509 591 4.516698 AGTGAGCTGGTGTTTAATTGAGTG 59.483 41.667 0.00 0.00 0.00 3.51
536 622 2.423538 GTGGTGAGATAAACATGGCACC 59.576 50.000 0.00 0.00 44.50 5.01
650 737 3.655211 CAGCCAGCCCCCACTCTT 61.655 66.667 0.00 0.00 0.00 2.85
657 744 0.910088 AGCCCCCACTCTTCCTACAC 60.910 60.000 0.00 0.00 0.00 2.90
670 757 6.549364 ACTCTTCCTACACTCCTCAGATAATG 59.451 42.308 0.00 0.00 0.00 1.90
715 808 7.148689 CCGACAACAAAAATGTACTCCTACTAC 60.149 40.741 0.00 0.00 0.00 2.73
926 1557 2.518349 CCACCACGCCACCTTTGT 60.518 61.111 0.00 0.00 0.00 2.83
1731 2380 2.440796 ATGCCTCCGCCACCAATG 60.441 61.111 0.00 0.00 0.00 2.82
1734 2383 3.443045 CCTCCGCCACCAATGCAC 61.443 66.667 0.00 0.00 0.00 4.57
1735 2384 3.443045 CTCCGCCACCAATGCACC 61.443 66.667 0.00 0.00 0.00 5.01
1736 2385 3.925630 CTCCGCCACCAATGCACCT 62.926 63.158 0.00 0.00 0.00 4.00
1737 2386 3.443045 CCGCCACCAATGCACCTC 61.443 66.667 0.00 0.00 0.00 3.85
1738 2387 3.803082 CGCCACCAATGCACCTCG 61.803 66.667 0.00 0.00 0.00 4.63
1739 2388 2.359850 GCCACCAATGCACCTCGA 60.360 61.111 0.00 0.00 0.00 4.04
1740 2389 2.690778 GCCACCAATGCACCTCGAC 61.691 63.158 0.00 0.00 0.00 4.20
1741 2390 1.003355 CCACCAATGCACCTCGACT 60.003 57.895 0.00 0.00 0.00 4.18
1742 2391 1.021390 CCACCAATGCACCTCGACTC 61.021 60.000 0.00 0.00 0.00 3.36
1824 2485 4.399395 CTGGAGCTCAAGCCGCCA 62.399 66.667 17.19 12.08 41.65 5.69
1848 2509 1.079405 TTCACCGTCGCCATCTTCC 60.079 57.895 0.00 0.00 0.00 3.46
1956 2617 1.377333 GTCCTACCCTTGCAGCACC 60.377 63.158 0.00 0.00 0.00 5.01
2049 2710 2.435663 CAGCCACCCACCATGTCA 59.564 61.111 0.00 0.00 0.00 3.58
2056 2717 2.665000 CCACCATGTCACTCGGCT 59.335 61.111 0.00 0.00 0.00 5.52
2194 2855 4.672283 CGTTACAAGCATGCATGATGACAA 60.672 41.667 30.64 20.26 33.31 3.18
2246 2907 4.753107 TCGTGTGGTTTCCTTCTCAATTAC 59.247 41.667 0.00 0.00 0.00 1.89
2333 2998 9.863650 TGTCTACTTAGTAGCTAGGTTTATCAT 57.136 33.333 14.11 0.00 36.22 2.45
2381 3048 6.490381 TGCTGGTATAGTGGTATAGTCTTCAG 59.510 42.308 0.00 0.00 0.00 3.02
2472 3176 5.457140 GTTACATTTCCATTTCGTGCAAGA 58.543 37.500 0.00 0.00 0.00 3.02
2481 3185 2.831685 TTCGTGCAAGATGGTGTACT 57.168 45.000 2.36 0.00 32.51 2.73
2505 3217 7.277981 ACTTATATTTGTCTGCAACCTACTTCG 59.722 37.037 0.00 0.00 33.82 3.79
2705 3423 6.560253 AAATCAGACAACATGTACTCCAAC 57.440 37.500 0.00 0.00 0.00 3.77
2727 3445 0.179205 GCGCTGAGATGACTGTTTGC 60.179 55.000 0.00 0.00 0.00 3.68
2749 3467 4.202182 GCGTATGGGAAACATGGTAGAGTA 60.202 45.833 0.00 0.00 40.82 2.59
2751 3469 5.301045 CGTATGGGAAACATGGTAGAGTAGA 59.699 44.000 0.00 0.00 40.82 2.59
2752 3470 5.878406 ATGGGAAACATGGTAGAGTAGAG 57.122 43.478 0.00 0.00 38.70 2.43
2774 3492 6.772716 AGAGTATTGCTGTAAATTATGGGGTG 59.227 38.462 0.00 0.00 0.00 4.61
2776 3494 5.596836 ATTGCTGTAAATTATGGGGTGTG 57.403 39.130 0.00 0.00 0.00 3.82
2779 3497 3.181487 GCTGTAAATTATGGGGTGTGCAG 60.181 47.826 0.00 0.00 0.00 4.41
2782 3500 2.143876 AATTATGGGGTGTGCAGGTC 57.856 50.000 0.00 0.00 0.00 3.85
2783 3501 0.258774 ATTATGGGGTGTGCAGGTCC 59.741 55.000 0.00 0.00 0.00 4.46
2784 3502 0.844661 TTATGGGGTGTGCAGGTCCT 60.845 55.000 0.00 0.00 0.00 3.85
2786 3504 0.844661 ATGGGGTGTGCAGGTCCTTA 60.845 55.000 0.00 0.00 0.00 2.69
2787 3505 0.844661 TGGGGTGTGCAGGTCCTTAT 60.845 55.000 0.00 0.00 0.00 1.73
2788 3506 1.209621 GGGGTGTGCAGGTCCTTATA 58.790 55.000 0.00 0.00 0.00 0.98
2789 3507 1.562475 GGGGTGTGCAGGTCCTTATAA 59.438 52.381 0.00 0.00 0.00 0.98
2790 3508 2.174854 GGGGTGTGCAGGTCCTTATAAT 59.825 50.000 0.00 0.00 0.00 1.28
2792 3510 4.278310 GGGTGTGCAGGTCCTTATAATTT 58.722 43.478 0.00 0.00 0.00 1.82
2793 3511 4.338400 GGGTGTGCAGGTCCTTATAATTTC 59.662 45.833 0.00 0.00 0.00 2.17
2794 3512 4.947388 GGTGTGCAGGTCCTTATAATTTCA 59.053 41.667 0.00 0.00 0.00 2.69
2795 3513 5.066505 GGTGTGCAGGTCCTTATAATTTCAG 59.933 44.000 0.00 0.00 0.00 3.02
2796 3514 5.648092 GTGTGCAGGTCCTTATAATTTCAGT 59.352 40.000 0.00 0.00 0.00 3.41
2797 3515 6.151144 GTGTGCAGGTCCTTATAATTTCAGTT 59.849 38.462 0.00 0.00 0.00 3.16
2798 3516 6.150976 TGTGCAGGTCCTTATAATTTCAGTTG 59.849 38.462 0.00 0.00 0.00 3.16
2799 3517 6.374333 GTGCAGGTCCTTATAATTTCAGTTGA 59.626 38.462 0.00 0.00 0.00 3.18
2800 3518 7.067494 GTGCAGGTCCTTATAATTTCAGTTGAT 59.933 37.037 0.00 0.00 0.00 2.57
2801 3519 7.615365 TGCAGGTCCTTATAATTTCAGTTGATT 59.385 33.333 0.00 0.00 0.00 2.57
2802 3520 8.470002 GCAGGTCCTTATAATTTCAGTTGATTT 58.530 33.333 0.00 0.00 0.00 2.17
2814 3532 9.612066 AATTTCAGTTGATTTTAGCAAAAAGGA 57.388 25.926 0.00 0.00 37.97 3.36
2815 3533 9.783081 ATTTCAGTTGATTTTAGCAAAAAGGAT 57.217 25.926 0.00 0.00 37.97 3.24
2816 3534 9.612066 TTTCAGTTGATTTTAGCAAAAAGGATT 57.388 25.926 0.00 0.00 37.97 3.01
2817 3535 8.592105 TCAGTTGATTTTAGCAAAAAGGATTG 57.408 30.769 0.00 0.00 37.97 2.67
2818 3536 8.203485 TCAGTTGATTTTAGCAAAAAGGATTGT 58.797 29.630 0.00 0.00 37.97 2.71
2819 3537 8.490355 CAGTTGATTTTAGCAAAAAGGATTGTC 58.510 33.333 0.00 0.00 37.97 3.18
2820 3538 8.424133 AGTTGATTTTAGCAAAAAGGATTGTCT 58.576 29.630 0.00 0.00 37.97 3.41
2821 3539 8.490355 GTTGATTTTAGCAAAAAGGATTGTCTG 58.510 33.333 0.00 0.00 37.97 3.51
2822 3540 7.950512 TGATTTTAGCAAAAAGGATTGTCTGA 58.049 30.769 0.00 0.00 37.97 3.27
2823 3541 8.420222 TGATTTTAGCAAAAAGGATTGTCTGAA 58.580 29.630 0.00 0.00 37.97 3.02
2824 3542 9.260002 GATTTTAGCAAAAAGGATTGTCTGAAA 57.740 29.630 0.00 0.00 37.97 2.69
2825 3543 8.647143 TTTTAGCAAAAAGGATTGTCTGAAAG 57.353 30.769 0.00 0.00 32.80 2.62
2826 3544 4.625028 AGCAAAAAGGATTGTCTGAAAGC 58.375 39.130 0.00 0.00 32.80 3.51
2827 3545 4.099881 AGCAAAAAGGATTGTCTGAAAGCA 59.900 37.500 0.00 0.00 32.80 3.91
2828 3546 4.992951 GCAAAAAGGATTGTCTGAAAGCAT 59.007 37.500 0.00 0.00 32.80 3.79
2829 3547 5.107220 GCAAAAAGGATTGTCTGAAAGCATG 60.107 40.000 0.00 0.00 32.80 4.06
2830 3548 5.796424 AAAAGGATTGTCTGAAAGCATGT 57.204 34.783 0.00 0.00 0.00 3.21
2831 3549 5.382618 AAAGGATTGTCTGAAAGCATGTC 57.617 39.130 0.00 0.00 0.00 3.06
2832 3550 4.025040 AGGATTGTCTGAAAGCATGTCA 57.975 40.909 0.00 0.00 0.00 3.58
2833 3551 4.401022 AGGATTGTCTGAAAGCATGTCAA 58.599 39.130 0.00 0.00 27.24 3.18
2834 3552 4.217118 AGGATTGTCTGAAAGCATGTCAAC 59.783 41.667 0.00 0.00 27.24 3.18
2835 3553 4.022935 GGATTGTCTGAAAGCATGTCAACA 60.023 41.667 0.00 0.00 27.24 3.33
2836 3554 5.336213 GGATTGTCTGAAAGCATGTCAACAT 60.336 40.000 0.00 0.00 27.24 2.71
2837 3555 5.518848 TTGTCTGAAAGCATGTCAACATT 57.481 34.783 0.00 0.00 27.24 2.71
2838 3556 6.631971 TTGTCTGAAAGCATGTCAACATTA 57.368 33.333 0.00 0.00 27.24 1.90
2839 3557 6.631971 TGTCTGAAAGCATGTCAACATTAA 57.368 33.333 0.00 0.00 27.24 1.40
2840 3558 6.437928 TGTCTGAAAGCATGTCAACATTAAC 58.562 36.000 0.00 0.00 27.24 2.01
2841 3559 6.262944 TGTCTGAAAGCATGTCAACATTAACT 59.737 34.615 0.00 0.00 27.24 2.24
2842 3560 6.580041 GTCTGAAAGCATGTCAACATTAACTG 59.420 38.462 0.00 0.00 27.24 3.16
2843 3561 5.221880 TGAAAGCATGTCAACATTAACTGC 58.778 37.500 0.00 0.00 33.61 4.40
2844 3562 5.009911 TGAAAGCATGTCAACATTAACTGCT 59.990 36.000 3.06 3.06 33.71 4.24
2845 3563 5.458041 AAGCATGTCAACATTAACTGCTT 57.542 34.783 12.71 12.71 36.44 3.91
2846 3564 5.051891 AGCATGTCAACATTAACTGCTTC 57.948 39.130 3.06 0.00 33.61 3.86
2847 3565 4.520111 AGCATGTCAACATTAACTGCTTCA 59.480 37.500 3.06 0.00 33.61 3.02
2848 3566 4.855388 GCATGTCAACATTAACTGCTTCAG 59.145 41.667 0.00 0.00 34.21 3.02
2849 3567 5.563475 GCATGTCAACATTAACTGCTTCAGT 60.563 40.000 0.00 0.00 39.47 3.41
2850 3568 5.422666 TGTCAACATTAACTGCTTCAGTG 57.577 39.130 0.00 0.00 44.62 3.66
2851 3569 5.122519 TGTCAACATTAACTGCTTCAGTGA 58.877 37.500 0.00 0.00 44.62 3.41
2852 3570 5.007626 TGTCAACATTAACTGCTTCAGTGAC 59.992 40.000 0.00 3.11 44.62 3.67
2853 3571 4.515191 TCAACATTAACTGCTTCAGTGACC 59.485 41.667 0.00 0.00 44.62 4.02
2854 3572 4.085357 ACATTAACTGCTTCAGTGACCA 57.915 40.909 0.00 0.00 44.62 4.02
2855 3573 4.460263 ACATTAACTGCTTCAGTGACCAA 58.540 39.130 0.00 0.00 44.62 3.67
2856 3574 4.516698 ACATTAACTGCTTCAGTGACCAAG 59.483 41.667 0.00 0.00 44.62 3.61
2857 3575 1.972872 AACTGCTTCAGTGACCAAGG 58.027 50.000 0.00 0.00 44.62 3.61
2858 3576 0.839946 ACTGCTTCAGTGACCAAGGT 59.160 50.000 0.00 0.00 43.63 3.50
2859 3577 1.233019 CTGCTTCAGTGACCAAGGTG 58.767 55.000 0.00 0.00 0.00 4.00
2860 3578 0.546122 TGCTTCAGTGACCAAGGTGT 59.454 50.000 0.00 0.00 0.00 4.16
2861 3579 1.064758 TGCTTCAGTGACCAAGGTGTT 60.065 47.619 0.00 0.00 0.00 3.32
2862 3580 2.024414 GCTTCAGTGACCAAGGTGTTT 58.976 47.619 0.00 0.00 0.00 2.83
2863 3581 2.223572 GCTTCAGTGACCAAGGTGTTTG 60.224 50.000 0.00 0.00 36.50 2.93
2864 3582 2.799126 TCAGTGACCAAGGTGTTTGT 57.201 45.000 0.00 0.00 34.87 2.83
2865 3583 3.916359 TCAGTGACCAAGGTGTTTGTA 57.084 42.857 0.00 0.00 34.87 2.41
2866 3584 4.223556 TCAGTGACCAAGGTGTTTGTAA 57.776 40.909 0.00 0.00 34.87 2.41
2867 3585 4.590918 TCAGTGACCAAGGTGTTTGTAAA 58.409 39.130 0.00 0.00 34.87 2.01
2868 3586 5.197451 TCAGTGACCAAGGTGTTTGTAAAT 58.803 37.500 0.00 0.00 34.87 1.40
2869 3587 5.654650 TCAGTGACCAAGGTGTTTGTAAATT 59.345 36.000 0.00 0.00 34.87 1.82
2870 3588 6.153680 TCAGTGACCAAGGTGTTTGTAAATTT 59.846 34.615 0.00 0.00 34.87 1.82
2871 3589 6.816140 CAGTGACCAAGGTGTTTGTAAATTTT 59.184 34.615 0.00 0.00 34.87 1.82
2872 3590 7.010091 CAGTGACCAAGGTGTTTGTAAATTTTC 59.990 37.037 0.00 0.00 34.87 2.29
2873 3591 6.020201 GTGACCAAGGTGTTTGTAAATTTTCG 60.020 38.462 0.00 0.00 34.87 3.46
2874 3592 5.353111 ACCAAGGTGTTTGTAAATTTTCGG 58.647 37.500 0.00 0.00 34.87 4.30
2880 3598 7.493367 AGGTGTTTGTAAATTTTCGGATTTGA 58.507 30.769 0.00 0.00 31.96 2.69
2890 3608 5.356882 TTTTCGGATTTGAACTAGCACTG 57.643 39.130 0.00 0.00 0.00 3.66
2892 3610 4.794278 TCGGATTTGAACTAGCACTGTA 57.206 40.909 0.00 0.00 0.00 2.74
2900 3618 7.801716 TTTGAACTAGCACTGTAGTTGAAAT 57.198 32.000 1.17 0.00 42.21 2.17
2901 3619 6.785488 TGAACTAGCACTGTAGTTGAAATG 57.215 37.500 1.17 0.00 42.21 2.32
2902 3620 5.179368 TGAACTAGCACTGTAGTTGAAATGC 59.821 40.000 1.17 0.00 42.21 3.56
2903 3621 4.003648 ACTAGCACTGTAGTTGAAATGCC 58.996 43.478 0.00 0.00 33.50 4.40
2904 3622 2.162681 AGCACTGTAGTTGAAATGCCC 58.837 47.619 0.00 0.00 33.50 5.36
2905 3623 1.885887 GCACTGTAGTTGAAATGCCCA 59.114 47.619 0.00 0.00 0.00 5.36
2906 3624 2.493278 GCACTGTAGTTGAAATGCCCAT 59.507 45.455 0.00 0.00 0.00 4.00
2907 3625 3.674138 GCACTGTAGTTGAAATGCCCATG 60.674 47.826 0.00 0.00 0.00 3.66
2929 3647 3.554342 CCTAGCTGGGCCGCATCT 61.554 66.667 19.61 4.36 0.00 2.90
2931 3649 1.890979 CTAGCTGGGCCGCATCTTG 60.891 63.158 19.61 0.00 0.00 3.02
2938 3656 1.372087 GGGCCGCATCTTGTCTGAAG 61.372 60.000 0.00 0.00 0.00 3.02
2943 3661 3.119708 GCCGCATCTTGTCTGAAGAAATT 60.120 43.478 0.00 0.00 0.00 1.82
2944 3662 4.094887 GCCGCATCTTGTCTGAAGAAATTA 59.905 41.667 0.00 0.00 0.00 1.40
2946 3664 6.678900 GCCGCATCTTGTCTGAAGAAATTAAT 60.679 38.462 0.00 0.00 0.00 1.40
2947 3665 7.253422 CCGCATCTTGTCTGAAGAAATTAATT 58.747 34.615 0.00 0.00 0.00 1.40
3024 3742 1.561076 ACTGGCATAGATTCACCTGCA 59.439 47.619 0.00 0.00 36.34 4.41
3025 3743 1.945394 CTGGCATAGATTCACCTGCAC 59.055 52.381 0.00 0.06 36.34 4.57
3029 3747 2.283298 CATAGATTCACCTGCACGCTT 58.717 47.619 0.00 0.00 0.00 4.68
3035 3753 2.074547 TCACCTGCACGCTTTACTAC 57.925 50.000 0.00 0.00 0.00 2.73
3038 3756 1.269166 CCTGCACGCTTTACTACTCG 58.731 55.000 0.00 0.00 0.00 4.18
3051 3769 7.859377 CGCTTTACTACTCGGATATAACTTCAA 59.141 37.037 0.00 0.00 0.00 2.69
3104 3822 8.817092 ATATACTTCTATCTACTGCTTCCTCC 57.183 38.462 0.00 0.00 0.00 4.30
3105 3823 4.873010 ACTTCTATCTACTGCTTCCTCCA 58.127 43.478 0.00 0.00 0.00 3.86
3106 3824 5.463154 ACTTCTATCTACTGCTTCCTCCAT 58.537 41.667 0.00 0.00 0.00 3.41
3107 3825 5.538433 ACTTCTATCTACTGCTTCCTCCATC 59.462 44.000 0.00 0.00 0.00 3.51
3108 3826 4.411927 TCTATCTACTGCTTCCTCCATCC 58.588 47.826 0.00 0.00 0.00 3.51
3109 3827 1.794714 TCTACTGCTTCCTCCATCCC 58.205 55.000 0.00 0.00 0.00 3.85
3110 3828 0.390860 CTACTGCTTCCTCCATCCCG 59.609 60.000 0.00 0.00 0.00 5.14
3111 3829 0.032515 TACTGCTTCCTCCATCCCGA 60.033 55.000 0.00 0.00 0.00 5.14
3112 3830 0.909610 ACTGCTTCCTCCATCCCGAA 60.910 55.000 0.00 0.00 0.00 4.30
3113 3831 0.253044 CTGCTTCCTCCATCCCGAAA 59.747 55.000 0.00 0.00 0.00 3.46
3114 3832 0.918983 TGCTTCCTCCATCCCGAAAT 59.081 50.000 0.00 0.00 0.00 2.17
3115 3833 2.104792 CTGCTTCCTCCATCCCGAAATA 59.895 50.000 0.00 0.00 0.00 1.40
3116 3834 2.158813 TGCTTCCTCCATCCCGAAATAC 60.159 50.000 0.00 0.00 0.00 1.89
3117 3835 2.104963 GCTTCCTCCATCCCGAAATACT 59.895 50.000 0.00 0.00 0.00 2.12
3118 3836 3.433740 GCTTCCTCCATCCCGAAATACTT 60.434 47.826 0.00 0.00 0.00 2.24
3119 3837 3.838244 TCCTCCATCCCGAAATACTTG 57.162 47.619 0.00 0.00 0.00 3.16
3120 3838 3.112263 TCCTCCATCCCGAAATACTTGT 58.888 45.455 0.00 0.00 0.00 3.16
3121 3839 3.134081 TCCTCCATCCCGAAATACTTGTC 59.866 47.826 0.00 0.00 0.00 3.18
3122 3840 3.123804 CTCCATCCCGAAATACTTGTCG 58.876 50.000 0.00 0.00 37.01 4.35
3123 3841 2.761767 TCCATCCCGAAATACTTGTCGA 59.238 45.455 0.00 0.00 39.64 4.20
3124 3842 3.196039 TCCATCCCGAAATACTTGTCGAA 59.804 43.478 0.00 0.00 39.64 3.71
3125 3843 3.555956 CCATCCCGAAATACTTGTCGAAG 59.444 47.826 0.00 0.00 39.64 3.79
3126 3844 4.430007 CATCCCGAAATACTTGTCGAAGA 58.570 43.478 0.00 0.00 39.64 2.87
3127 3845 4.524316 TCCCGAAATACTTGTCGAAGAA 57.476 40.909 0.00 0.00 39.69 2.52
3128 3846 4.885413 TCCCGAAATACTTGTCGAAGAAA 58.115 39.130 0.00 0.00 39.69 2.52
3129 3847 5.484715 TCCCGAAATACTTGTCGAAGAAAT 58.515 37.500 0.00 0.00 39.69 2.17
3130 3848 5.579511 TCCCGAAATACTTGTCGAAGAAATC 59.420 40.000 0.00 0.00 39.69 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.308993 GAGCTCTGTGCAACACAACC 59.691 55.000 6.43 0.00 45.67 3.77
1 2 1.262683 GAGAGCTCTGTGCAACACAAC 59.737 52.381 23.91 0.00 45.67 3.32
2 3 1.586422 GAGAGCTCTGTGCAACACAA 58.414 50.000 23.91 0.00 45.67 3.33
3 4 0.598419 CGAGAGCTCTGTGCAACACA 60.598 55.000 23.91 0.00 45.67 3.72
4 5 1.287730 CCGAGAGCTCTGTGCAACAC 61.288 60.000 23.91 2.49 45.67 3.32
6 7 1.739562 CCCGAGAGCTCTGTGCAAC 60.740 63.158 23.91 4.15 45.94 4.17
7 8 2.659016 CCCGAGAGCTCTGTGCAA 59.341 61.111 23.91 0.00 45.94 4.08
8 9 3.385384 CCCCGAGAGCTCTGTGCA 61.385 66.667 23.91 0.00 45.94 4.57
9 10 4.154347 CCCCCGAGAGCTCTGTGC 62.154 72.222 23.91 5.83 43.29 4.57
10 11 4.154347 GCCCCCGAGAGCTCTGTG 62.154 72.222 23.91 13.34 0.00 3.66
11 12 4.704103 TGCCCCCGAGAGCTCTGT 62.704 66.667 23.91 0.00 0.00 3.41
12 13 4.154347 GTGCCCCCGAGAGCTCTG 62.154 72.222 23.91 13.29 0.00 3.35
16 17 4.864334 CATGGTGCCCCCGAGAGC 62.864 72.222 0.00 0.00 35.15 4.09
17 18 3.083349 TCATGGTGCCCCCGAGAG 61.083 66.667 0.00 0.00 35.15 3.20
18 19 2.896677 ATCTCATGGTGCCCCCGAGA 62.897 60.000 6.87 6.87 40.57 4.04
19 20 2.446848 ATCTCATGGTGCCCCCGAG 61.447 63.158 0.00 0.00 35.15 4.63
20 21 2.366837 ATCTCATGGTGCCCCCGA 60.367 61.111 0.00 0.00 35.15 5.14
21 22 2.203252 CATCTCATGGTGCCCCCG 60.203 66.667 0.00 0.00 35.15 5.73
22 23 1.150081 CTCATCTCATGGTGCCCCC 59.850 63.158 0.00 0.00 0.00 5.40
23 24 0.465097 CACTCATCTCATGGTGCCCC 60.465 60.000 0.00 0.00 0.00 5.80
24 25 0.543277 TCACTCATCTCATGGTGCCC 59.457 55.000 0.00 0.00 33.96 5.36
25 26 2.219458 CATCACTCATCTCATGGTGCC 58.781 52.381 0.00 0.00 33.96 5.01
26 27 2.612672 CACATCACTCATCTCATGGTGC 59.387 50.000 0.00 0.00 33.96 5.01
27 28 3.203716 CCACATCACTCATCTCATGGTG 58.796 50.000 0.00 0.00 34.71 4.17
28 29 2.842496 ACCACATCACTCATCTCATGGT 59.158 45.455 0.00 0.00 34.36 3.55
29 30 3.555527 ACCACATCACTCATCTCATGG 57.444 47.619 0.00 0.00 0.00 3.66
30 31 5.014808 TGTACCACATCACTCATCTCATG 57.985 43.478 0.00 0.00 0.00 3.07
31 32 5.883685 ATGTACCACATCACTCATCTCAT 57.116 39.130 0.00 0.00 32.38 2.90
43 44 2.912956 ACTCCCAAGTGATGTACCACAT 59.087 45.455 5.26 0.00 42.43 3.21
44 45 2.334977 ACTCCCAAGTGATGTACCACA 58.665 47.619 5.26 0.00 39.42 4.17
45 46 3.767673 TCTACTCCCAAGTGATGTACCAC 59.232 47.826 0.00 0.00 36.92 4.16
46 47 3.767673 GTCTACTCCCAAGTGATGTACCA 59.232 47.826 0.00 0.00 36.92 3.25
47 48 3.181489 CGTCTACTCCCAAGTGATGTACC 60.181 52.174 0.00 0.00 36.92 3.34
48 49 3.693085 TCGTCTACTCCCAAGTGATGTAC 59.307 47.826 0.00 0.00 36.92 2.90
49 50 3.693085 GTCGTCTACTCCCAAGTGATGTA 59.307 47.826 0.00 0.00 36.92 2.29
50 51 2.492484 GTCGTCTACTCCCAAGTGATGT 59.508 50.000 0.00 0.00 36.92 3.06
51 52 2.159226 GGTCGTCTACTCCCAAGTGATG 60.159 54.545 0.00 0.00 36.92 3.07
52 53 2.100989 GGTCGTCTACTCCCAAGTGAT 58.899 52.381 0.00 0.00 36.92 3.06
53 54 1.542492 GGTCGTCTACTCCCAAGTGA 58.458 55.000 0.00 0.00 36.92 3.41
54 55 0.170561 CGGTCGTCTACTCCCAAGTG 59.829 60.000 0.00 0.00 36.92 3.16
55 56 0.037303 TCGGTCGTCTACTCCCAAGT 59.963 55.000 0.00 0.00 39.66 3.16
56 57 0.450983 GTCGGTCGTCTACTCCCAAG 59.549 60.000 0.00 0.00 0.00 3.61
57 58 0.250858 TGTCGGTCGTCTACTCCCAA 60.251 55.000 0.00 0.00 0.00 4.12
58 59 0.034767 ATGTCGGTCGTCTACTCCCA 60.035 55.000 0.00 0.00 0.00 4.37
59 60 0.381089 CATGTCGGTCGTCTACTCCC 59.619 60.000 0.00 0.00 0.00 4.30
60 61 1.063764 GTCATGTCGGTCGTCTACTCC 59.936 57.143 0.00 0.00 0.00 3.85
61 62 1.267433 CGTCATGTCGGTCGTCTACTC 60.267 57.143 4.33 0.00 0.00 2.59
62 63 0.725686 CGTCATGTCGGTCGTCTACT 59.274 55.000 4.33 0.00 0.00 2.57
63 64 0.723414 TCGTCATGTCGGTCGTCTAC 59.277 55.000 12.31 0.00 0.00 2.59
64 65 1.004595 CTCGTCATGTCGGTCGTCTA 58.995 55.000 12.31 0.00 0.00 2.59
65 66 1.794864 CTCGTCATGTCGGTCGTCT 59.205 57.895 12.31 0.00 0.00 4.18
66 67 1.868251 GCTCGTCATGTCGGTCGTC 60.868 63.158 12.31 0.00 0.00 4.20
67 68 2.178521 GCTCGTCATGTCGGTCGT 59.821 61.111 12.31 0.00 0.00 4.34
68 69 2.944557 CGCTCGTCATGTCGGTCG 60.945 66.667 12.31 11.48 0.00 4.79
69 70 1.443872 AACGCTCGTCATGTCGGTC 60.444 57.895 12.31 4.04 0.00 4.79
70 71 1.733041 CAACGCTCGTCATGTCGGT 60.733 57.895 12.31 0.08 0.00 4.69
71 72 1.733041 ACAACGCTCGTCATGTCGG 60.733 57.895 12.31 4.75 0.00 4.79
72 73 1.412226 CACAACGCTCGTCATGTCG 59.588 57.895 5.98 5.98 0.00 4.35
73 74 1.130613 GCACAACGCTCGTCATGTC 59.869 57.895 0.00 0.00 37.77 3.06
74 75 2.657757 CGCACAACGCTCGTCATGT 61.658 57.895 0.00 0.00 39.08 3.21
75 76 2.094539 CGCACAACGCTCGTCATG 59.905 61.111 0.00 0.00 39.08 3.07
76 77 2.049526 TCGCACAACGCTCGTCAT 60.050 55.556 0.00 0.00 43.23 3.06
77 78 3.028019 GTCGCACAACGCTCGTCA 61.028 61.111 0.00 0.00 43.23 4.35
78 79 3.764049 GGTCGCACAACGCTCGTC 61.764 66.667 0.00 0.00 43.23 4.20
79 80 4.578898 TGGTCGCACAACGCTCGT 62.579 61.111 0.00 0.00 43.23 4.18
80 81 2.667318 ATTGGTCGCACAACGCTCG 61.667 57.895 0.00 0.00 43.23 5.03
81 82 1.154413 CATTGGTCGCACAACGCTC 60.154 57.895 0.00 0.00 43.23 5.03
82 83 2.616330 CCATTGGTCGCACAACGCT 61.616 57.895 0.00 0.00 43.23 5.07
83 84 2.126888 CCATTGGTCGCACAACGC 60.127 61.111 0.00 0.00 43.23 4.84
84 85 2.126888 GCCATTGGTCGCACAACG 60.127 61.111 4.26 0.00 45.62 4.10
85 86 2.258286 GGCCATTGGTCGCACAAC 59.742 61.111 4.26 0.00 32.39 3.32
86 87 3.361158 CGGCCATTGGTCGCACAA 61.361 61.111 17.86 0.00 45.88 3.33
94 95 2.799207 GCAACAATATCACGGCCATTGG 60.799 50.000 15.10 0.00 34.63 3.16
108 109 4.133612 CCATGGGTGGGCAACAAT 57.866 55.556 2.85 0.00 42.11 2.71
152 153 2.533916 AGAGATGCAAGAGAGTGGACA 58.466 47.619 0.00 0.00 0.00 4.02
158 159 7.333921 AGACAACAAATAAGAGATGCAAGAGAG 59.666 37.037 0.00 0.00 0.00 3.20
183 184 7.985752 AGGAACTACGGGAAAAATATAGTTGAG 59.014 37.037 0.00 0.00 36.47 3.02
184 185 7.854337 AGGAACTACGGGAAAAATATAGTTGA 58.146 34.615 0.00 0.00 36.47 3.18
185 186 8.502105 AAGGAACTACGGGAAAAATATAGTTG 57.498 34.615 0.00 0.00 38.49 3.16
191 192 8.102047 TGATACAAAGGAACTACGGGAAAAATA 58.898 33.333 0.00 0.00 38.49 1.40
192 193 6.943718 TGATACAAAGGAACTACGGGAAAAAT 59.056 34.615 0.00 0.00 38.49 1.82
200 201 3.119388 TCGGGTGATACAAAGGAACTACG 60.119 47.826 0.00 0.00 38.49 3.51
201 202 4.460948 TCGGGTGATACAAAGGAACTAC 57.539 45.455 0.00 0.00 38.49 2.73
202 203 5.486735 TTTCGGGTGATACAAAGGAACTA 57.513 39.130 0.00 0.00 38.49 2.24
204 205 4.698304 TGATTTCGGGTGATACAAAGGAAC 59.302 41.667 0.00 0.00 0.00 3.62
215 216 3.081061 CCAACTCATTGATTTCGGGTGA 58.919 45.455 0.00 0.00 38.15 4.02
216 217 2.819608 ACCAACTCATTGATTTCGGGTG 59.180 45.455 0.00 0.00 38.15 4.61
293 363 5.818857 GGCAAATACCACTACCTCGAAAATA 59.181 40.000 0.00 0.00 0.00 1.40
294 364 4.638865 GGCAAATACCACTACCTCGAAAAT 59.361 41.667 0.00 0.00 0.00 1.82
298 368 1.135527 CGGCAAATACCACTACCTCGA 59.864 52.381 0.00 0.00 0.00 4.04
299 369 1.134907 ACGGCAAATACCACTACCTCG 60.135 52.381 0.00 0.00 0.00 4.63
309 379 7.198306 AGTGGCTATAAATAACGGCAAATAC 57.802 36.000 0.00 0.00 33.62 1.89
331 401 5.135508 TCTCGAAGCTGCTAAAACTAAGT 57.864 39.130 0.90 0.00 0.00 2.24
336 406 5.792468 CAGAATTTCTCGAAGCTGCTAAAAC 59.208 40.000 0.90 0.00 0.00 2.43
344 414 2.626840 GAGCCAGAATTTCTCGAAGCT 58.373 47.619 8.66 8.66 33.08 3.74
349 422 1.281899 GACGGAGCCAGAATTTCTCG 58.718 55.000 0.00 0.00 0.00 4.04
352 425 1.734465 CAGTGACGGAGCCAGAATTTC 59.266 52.381 0.00 0.00 0.00 2.17
353 426 1.072331 ACAGTGACGGAGCCAGAATTT 59.928 47.619 0.00 0.00 0.00 1.82
364 437 1.013596 TGTTTGAGCAACAGTGACGG 58.986 50.000 0.00 0.00 40.71 4.79
365 438 2.823196 TTGTTTGAGCAACAGTGACG 57.177 45.000 0.00 0.00 46.37 4.35
366 439 3.242739 ACGATTGTTTGAGCAACAGTGAC 60.243 43.478 0.00 0.00 46.37 3.67
367 440 2.942376 ACGATTGTTTGAGCAACAGTGA 59.058 40.909 0.00 0.00 46.37 3.41
369 442 3.546020 CGAACGATTGTTTGAGCAACAGT 60.546 43.478 7.23 0.00 46.37 3.55
377 450 2.604011 ACAACGTCGAACGATTGTTTGA 59.396 40.909 11.25 11.25 46.05 2.69
383 461 5.230726 GGATTATACACAACGTCGAACGATT 59.769 40.000 13.06 3.10 46.05 3.34
391 469 8.867112 TCTCTTTATGGATTATACACAACGTC 57.133 34.615 0.00 0.00 0.00 4.34
394 472 9.262358 GTCCTCTCTTTATGGATTATACACAAC 57.738 37.037 0.00 0.00 32.03 3.32
421 501 2.704725 TTTTTGGCGTCAAGATCAGC 57.295 45.000 1.31 0.00 33.98 4.26
449 529 1.271217 ACGCACCTTTTAGGGGAAGAC 60.271 52.381 0.00 0.00 43.10 3.01
459 539 0.593128 GCATGAGTGACGCACCTTTT 59.407 50.000 0.00 0.00 34.49 2.27
497 577 6.259638 TCACCACGAAAACACTCAATTAAAC 58.740 36.000 0.00 0.00 0.00 2.01
499 579 5.818336 TCTCACCACGAAAACACTCAATTAA 59.182 36.000 0.00 0.00 0.00 1.40
500 580 5.361427 TCTCACCACGAAAACACTCAATTA 58.639 37.500 0.00 0.00 0.00 1.40
509 591 5.390613 CCATGTTTATCTCACCACGAAAAC 58.609 41.667 0.00 0.00 0.00 2.43
536 622 8.939201 AATGTCTGTCTCTGTGTTTCTATATG 57.061 34.615 0.00 0.00 0.00 1.78
650 737 7.836685 GGATATCATTATCTGAGGAGTGTAGGA 59.163 40.741 4.83 0.00 37.28 2.94
657 744 7.070198 AGCATCTGGATATCATTATCTGAGGAG 59.930 40.741 4.83 0.00 37.28 3.69
670 757 2.613977 CGGGTTGGAGCATCTGGATATC 60.614 54.545 0.00 0.00 33.73 1.63
926 1557 2.680352 AGAGGAAGGGCGAGCGAA 60.680 61.111 0.00 0.00 0.00 4.70
1332 1981 2.955881 GCCCTTGGTCCAGTAGCGT 61.956 63.158 0.00 0.00 0.00 5.07
1731 2380 3.973267 GAGGTGCGAGTCGAGGTGC 62.973 68.421 18.61 0.00 0.00 5.01
1732 2381 2.179517 GAGGTGCGAGTCGAGGTG 59.820 66.667 18.61 0.00 0.00 4.00
1733 2382 3.432588 CGAGGTGCGAGTCGAGGT 61.433 66.667 18.61 0.00 44.57 3.85
1734 2383 4.180946 CCGAGGTGCGAGTCGAGG 62.181 72.222 18.61 5.04 44.57 4.63
1735 2384 4.838486 GCCGAGGTGCGAGTCGAG 62.838 72.222 18.61 0.00 44.57 4.04
1737 2386 4.498520 ATGCCGAGGTGCGAGTCG 62.499 66.667 8.54 8.54 44.57 4.18
1738 2387 2.887568 CATGCCGAGGTGCGAGTC 60.888 66.667 0.00 0.00 44.57 3.36
1739 2388 4.457496 CCATGCCGAGGTGCGAGT 62.457 66.667 0.00 0.00 44.57 4.18
1794 2455 2.203832 TCCAGCCCTGACAGCAGA 60.204 61.111 0.00 0.00 45.17 4.26
1824 2485 1.945354 ATGGCGACGGTGAAGACGAT 61.945 55.000 0.00 0.00 34.93 3.73
2049 2710 2.441164 ATCTCCTGCGAGCCGAGT 60.441 61.111 8.48 0.00 35.94 4.18
2173 2834 4.217983 TGTTGTCATCATGCATGCTTGTAA 59.782 37.500 27.12 13.83 31.70 2.41
2174 2835 3.757493 TGTTGTCATCATGCATGCTTGTA 59.243 39.130 27.12 17.04 31.70 2.41
2175 2836 2.559231 TGTTGTCATCATGCATGCTTGT 59.441 40.909 27.12 15.29 31.70 3.16
2176 2837 3.224884 TGTTGTCATCATGCATGCTTG 57.775 42.857 23.82 23.82 31.70 4.01
2177 2838 3.945981 TTGTTGTCATCATGCATGCTT 57.054 38.095 22.25 10.16 31.70 3.91
2178 2839 4.499188 GCTATTGTTGTCATCATGCATGCT 60.499 41.667 22.25 9.87 31.70 3.79
2179 2840 3.734231 GCTATTGTTGTCATCATGCATGC 59.266 43.478 22.25 11.82 31.70 4.06
2194 2855 1.751351 TGAGCTGAGCTACGCTATTGT 59.249 47.619 7.08 0.00 39.88 2.71
2246 2907 9.796120 TGATTAACAAAAGGAAAACACAAGTAG 57.204 29.630 0.00 0.00 0.00 2.57
2333 2998 6.573680 GCACCACCAGTTACTACTCTTAATGA 60.574 42.308 0.00 0.00 30.26 2.57
2334 2999 5.581085 GCACCACCAGTTACTACTCTTAATG 59.419 44.000 0.00 0.00 30.26 1.90
2381 3048 3.422417 TCGATCGACATCTTCTTGACC 57.578 47.619 15.15 0.00 0.00 4.02
2472 3176 7.067008 GGTTGCAGACAAATATAAGTACACCAT 59.933 37.037 0.00 0.00 37.58 3.55
2481 3185 6.036735 GCGAAGTAGGTTGCAGACAAATATAA 59.963 38.462 0.00 0.00 37.58 0.98
2505 3217 2.252976 TGCATTTTTGGGACCAAAGC 57.747 45.000 15.37 15.49 45.15 3.51
2692 3410 1.079405 CGCCGGTTGGAGTACATGT 60.079 57.895 1.90 2.69 37.49 3.21
2705 3423 2.584418 CAGTCATCTCAGCGCCGG 60.584 66.667 2.29 0.00 0.00 6.13
2727 3445 4.402056 ACTCTACCATGTTTCCCATACG 57.598 45.455 0.00 0.00 30.71 3.06
2749 3467 6.772716 CACCCCATAATTTACAGCAATACTCT 59.227 38.462 0.00 0.00 0.00 3.24
2751 3469 6.321181 CACACCCCATAATTTACAGCAATACT 59.679 38.462 0.00 0.00 0.00 2.12
2752 3470 6.503524 CACACCCCATAATTTACAGCAATAC 58.496 40.000 0.00 0.00 0.00 1.89
2767 3485 0.844661 TAAGGACCTGCACACCCCAT 60.845 55.000 0.00 0.00 0.00 4.00
2774 3492 6.374333 TCAACTGAAATTATAAGGACCTGCAC 59.626 38.462 0.00 0.00 0.00 4.57
2776 3494 7.573968 ATCAACTGAAATTATAAGGACCTGC 57.426 36.000 0.00 0.00 0.00 4.85
2788 3506 9.612066 TCCTTTTTGCTAAAATCAACTGAAATT 57.388 25.926 6.52 0.00 33.05 1.82
2789 3507 9.783081 ATCCTTTTTGCTAAAATCAACTGAAAT 57.217 25.926 6.52 0.00 33.05 2.17
2790 3508 9.612066 AATCCTTTTTGCTAAAATCAACTGAAA 57.388 25.926 6.52 0.00 33.05 2.69
2792 3510 8.203485 ACAATCCTTTTTGCTAAAATCAACTGA 58.797 29.630 6.52 0.00 33.05 3.41
2793 3511 8.369218 ACAATCCTTTTTGCTAAAATCAACTG 57.631 30.769 6.52 4.45 33.05 3.16
2794 3512 8.424133 AGACAATCCTTTTTGCTAAAATCAACT 58.576 29.630 6.52 0.00 33.05 3.16
2795 3513 8.490355 CAGACAATCCTTTTTGCTAAAATCAAC 58.510 33.333 6.52 0.00 33.05 3.18
2796 3514 8.420222 TCAGACAATCCTTTTTGCTAAAATCAA 58.580 29.630 6.52 0.00 33.05 2.57
2797 3515 7.950512 TCAGACAATCCTTTTTGCTAAAATCA 58.049 30.769 6.52 0.00 33.05 2.57
2798 3516 8.816640 TTCAGACAATCCTTTTTGCTAAAATC 57.183 30.769 6.52 1.19 33.05 2.17
2799 3517 9.264719 CTTTCAGACAATCCTTTTTGCTAAAAT 57.735 29.630 6.52 0.00 33.05 1.82
2800 3518 7.224557 GCTTTCAGACAATCCTTTTTGCTAAAA 59.775 33.333 5.93 5.93 0.00 1.52
2801 3519 6.701400 GCTTTCAGACAATCCTTTTTGCTAAA 59.299 34.615 0.00 0.00 0.00 1.85
2802 3520 6.183360 TGCTTTCAGACAATCCTTTTTGCTAA 60.183 34.615 0.00 0.00 0.00 3.09
2803 3521 5.301551 TGCTTTCAGACAATCCTTTTTGCTA 59.698 36.000 0.00 0.00 0.00 3.49
2804 3522 4.099881 TGCTTTCAGACAATCCTTTTTGCT 59.900 37.500 0.00 0.00 0.00 3.91
2805 3523 4.370917 TGCTTTCAGACAATCCTTTTTGC 58.629 39.130 0.00 0.00 0.00 3.68
2806 3524 5.987347 ACATGCTTTCAGACAATCCTTTTTG 59.013 36.000 0.00 0.00 0.00 2.44
2807 3525 6.165700 ACATGCTTTCAGACAATCCTTTTT 57.834 33.333 0.00 0.00 0.00 1.94
2808 3526 5.302568 TGACATGCTTTCAGACAATCCTTTT 59.697 36.000 0.00 0.00 0.00 2.27
2809 3527 4.828939 TGACATGCTTTCAGACAATCCTTT 59.171 37.500 0.00 0.00 0.00 3.11
2810 3528 4.401022 TGACATGCTTTCAGACAATCCTT 58.599 39.130 0.00 0.00 0.00 3.36
2811 3529 4.025040 TGACATGCTTTCAGACAATCCT 57.975 40.909 0.00 0.00 0.00 3.24
2812 3530 4.022935 TGTTGACATGCTTTCAGACAATCC 60.023 41.667 0.00 0.00 0.00 3.01
2813 3531 5.112220 TGTTGACATGCTTTCAGACAATC 57.888 39.130 0.00 0.00 0.00 2.67
2814 3532 5.717078 ATGTTGACATGCTTTCAGACAAT 57.283 34.783 0.00 0.00 34.83 2.71
2815 3533 5.518848 AATGTTGACATGCTTTCAGACAA 57.481 34.783 0.00 0.00 36.56 3.18
2816 3534 6.262944 AGTTAATGTTGACATGCTTTCAGACA 59.737 34.615 0.00 0.00 36.56 3.41
2817 3535 6.580041 CAGTTAATGTTGACATGCTTTCAGAC 59.420 38.462 0.00 0.00 36.56 3.51
2818 3536 6.671190 CAGTTAATGTTGACATGCTTTCAGA 58.329 36.000 0.00 0.00 36.56 3.27
2819 3537 5.344128 GCAGTTAATGTTGACATGCTTTCAG 59.656 40.000 0.00 0.00 36.56 3.02
2820 3538 5.009911 AGCAGTTAATGTTGACATGCTTTCA 59.990 36.000 3.94 0.00 36.56 2.69
2821 3539 5.464168 AGCAGTTAATGTTGACATGCTTTC 58.536 37.500 3.94 0.00 36.56 2.62
2822 3540 5.458041 AGCAGTTAATGTTGACATGCTTT 57.542 34.783 3.94 0.00 36.56 3.51
2823 3541 5.009911 TGAAGCAGTTAATGTTGACATGCTT 59.990 36.000 17.12 17.12 40.76 3.91
2824 3542 4.520111 TGAAGCAGTTAATGTTGACATGCT 59.480 37.500 3.94 3.94 36.56 3.79
2825 3543 4.797471 TGAAGCAGTTAATGTTGACATGC 58.203 39.130 0.00 0.00 36.56 4.06
2826 3544 5.854866 CACTGAAGCAGTTAATGTTGACATG 59.145 40.000 0.00 0.00 42.59 3.21
2827 3545 5.764686 TCACTGAAGCAGTTAATGTTGACAT 59.235 36.000 0.00 0.00 42.59 3.06
2828 3546 5.007626 GTCACTGAAGCAGTTAATGTTGACA 59.992 40.000 0.00 0.00 42.59 3.58
2829 3547 5.444122 GTCACTGAAGCAGTTAATGTTGAC 58.556 41.667 0.00 0.00 42.59 3.18
2830 3548 4.515191 GGTCACTGAAGCAGTTAATGTTGA 59.485 41.667 0.00 0.00 42.59 3.18
2831 3549 4.275689 TGGTCACTGAAGCAGTTAATGTTG 59.724 41.667 0.00 0.00 42.59 3.33
2832 3550 4.460263 TGGTCACTGAAGCAGTTAATGTT 58.540 39.130 0.00 0.00 42.59 2.71
2833 3551 4.085357 TGGTCACTGAAGCAGTTAATGT 57.915 40.909 0.00 0.00 42.59 2.71
2834 3552 4.083110 CCTTGGTCACTGAAGCAGTTAATG 60.083 45.833 0.00 0.00 42.59 1.90
2835 3553 4.074970 CCTTGGTCACTGAAGCAGTTAAT 58.925 43.478 0.00 0.00 42.59 1.40
2836 3554 3.118038 ACCTTGGTCACTGAAGCAGTTAA 60.118 43.478 0.00 0.00 42.59 2.01
2837 3555 2.438021 ACCTTGGTCACTGAAGCAGTTA 59.562 45.455 0.00 0.00 42.59 2.24
2838 3556 1.212935 ACCTTGGTCACTGAAGCAGTT 59.787 47.619 0.00 0.00 42.59 3.16
2839 3557 0.839946 ACCTTGGTCACTGAAGCAGT 59.160 50.000 0.00 0.00 46.51 4.40
2840 3558 1.233019 CACCTTGGTCACTGAAGCAG 58.767 55.000 0.00 0.00 37.52 4.24
2841 3559 0.546122 ACACCTTGGTCACTGAAGCA 59.454 50.000 0.00 0.00 0.00 3.91
2842 3560 1.680338 AACACCTTGGTCACTGAAGC 58.320 50.000 0.00 0.00 0.00 3.86
2843 3561 3.016736 ACAAACACCTTGGTCACTGAAG 58.983 45.455 0.00 0.00 39.56 3.02
2844 3562 3.080300 ACAAACACCTTGGTCACTGAA 57.920 42.857 0.00 0.00 39.56 3.02
2845 3563 2.799126 ACAAACACCTTGGTCACTGA 57.201 45.000 0.00 0.00 39.56 3.41
2846 3564 4.974368 TTTACAAACACCTTGGTCACTG 57.026 40.909 0.00 0.00 39.56 3.66
2847 3565 6.538945 AAATTTACAAACACCTTGGTCACT 57.461 33.333 0.00 0.00 39.56 3.41
2848 3566 6.020201 CGAAAATTTACAAACACCTTGGTCAC 60.020 38.462 0.00 0.00 39.56 3.67
2849 3567 6.037098 CGAAAATTTACAAACACCTTGGTCA 58.963 36.000 0.00 0.00 39.56 4.02
2850 3568 5.460748 CCGAAAATTTACAAACACCTTGGTC 59.539 40.000 0.00 0.00 39.56 4.02
2851 3569 5.127356 TCCGAAAATTTACAAACACCTTGGT 59.873 36.000 0.00 0.00 39.56 3.67
2852 3570 5.593010 TCCGAAAATTTACAAACACCTTGG 58.407 37.500 0.00 0.00 39.56 3.61
2853 3571 7.707774 AATCCGAAAATTTACAAACACCTTG 57.292 32.000 0.00 0.00 41.19 3.61
2854 3572 7.982354 TCAAATCCGAAAATTTACAAACACCTT 59.018 29.630 0.00 0.00 0.00 3.50
2855 3573 7.493367 TCAAATCCGAAAATTTACAAACACCT 58.507 30.769 0.00 0.00 0.00 4.00
2856 3574 7.701809 TCAAATCCGAAAATTTACAAACACC 57.298 32.000 0.00 0.00 0.00 4.16
2857 3575 8.813282 AGTTCAAATCCGAAAATTTACAAACAC 58.187 29.630 0.00 0.00 0.00 3.32
2858 3576 8.934507 AGTTCAAATCCGAAAATTTACAAACA 57.065 26.923 0.00 0.00 0.00 2.83
2860 3578 9.187455 GCTAGTTCAAATCCGAAAATTTACAAA 57.813 29.630 0.00 0.00 0.00 2.83
2861 3579 8.353684 TGCTAGTTCAAATCCGAAAATTTACAA 58.646 29.630 0.00 0.00 0.00 2.41
2862 3580 7.806014 GTGCTAGTTCAAATCCGAAAATTTACA 59.194 33.333 0.00 0.00 0.00 2.41
2863 3581 8.021396 AGTGCTAGTTCAAATCCGAAAATTTAC 58.979 33.333 0.00 0.00 0.00 2.01
2864 3582 8.020819 CAGTGCTAGTTCAAATCCGAAAATTTA 58.979 33.333 0.00 0.00 0.00 1.40
2865 3583 6.863126 CAGTGCTAGTTCAAATCCGAAAATTT 59.137 34.615 0.00 0.00 0.00 1.82
2866 3584 6.016276 ACAGTGCTAGTTCAAATCCGAAAATT 60.016 34.615 0.00 0.00 0.00 1.82
2867 3585 5.473504 ACAGTGCTAGTTCAAATCCGAAAAT 59.526 36.000 0.00 0.00 0.00 1.82
2868 3586 4.819630 ACAGTGCTAGTTCAAATCCGAAAA 59.180 37.500 0.00 0.00 0.00 2.29
2869 3587 4.385825 ACAGTGCTAGTTCAAATCCGAAA 58.614 39.130 0.00 0.00 0.00 3.46
2870 3588 4.002906 ACAGTGCTAGTTCAAATCCGAA 57.997 40.909 0.00 0.00 0.00 4.30
2871 3589 3.678056 ACAGTGCTAGTTCAAATCCGA 57.322 42.857 0.00 0.00 0.00 4.55
2872 3590 4.495422 ACTACAGTGCTAGTTCAAATCCG 58.505 43.478 0.00 0.00 0.00 4.18
2873 3591 5.932303 TCAACTACAGTGCTAGTTCAAATCC 59.068 40.000 12.40 0.00 35.20 3.01
2874 3592 7.421530 TTCAACTACAGTGCTAGTTCAAATC 57.578 36.000 12.40 0.00 35.20 2.17
2880 3598 4.455877 GGCATTTCAACTACAGTGCTAGTT 59.544 41.667 10.50 10.50 37.43 2.24
2901 3619 2.203451 AGCTAGGCATGCATGGGC 60.203 61.111 27.34 20.15 41.68 5.36
2902 3620 1.901948 CCAGCTAGGCATGCATGGG 60.902 63.158 27.34 14.35 0.00 4.00
2903 3621 1.901948 CCCAGCTAGGCATGCATGG 60.902 63.158 27.34 16.49 35.39 3.66
2904 3622 3.759544 CCCAGCTAGGCATGCATG 58.240 61.111 22.70 22.70 35.39 4.06
2923 3641 9.430838 CTAATTAATTTCTTCAGACAAGATGCG 57.569 33.333 5.91 0.00 0.00 4.73
2938 3656 9.547753 TGCCAGTATCTCTGACTAATTAATTTC 57.452 33.333 5.91 0.00 46.27 2.17
2943 3661 6.014242 CCCATGCCAGTATCTCTGACTAATTA 60.014 42.308 0.00 0.00 46.27 1.40
2944 3662 5.221803 CCCATGCCAGTATCTCTGACTAATT 60.222 44.000 0.00 0.00 46.27 1.40
2946 3664 3.643320 CCCATGCCAGTATCTCTGACTAA 59.357 47.826 0.00 0.00 46.27 2.24
2947 3665 3.234353 CCCATGCCAGTATCTCTGACTA 58.766 50.000 0.00 0.00 46.27 2.59
2950 3668 1.344393 ACCCCATGCCAGTATCTCTGA 60.344 52.381 0.00 0.00 46.27 3.27
2958 3676 1.691219 CAAGGTACCCCATGCCAGT 59.309 57.895 8.74 0.00 34.94 4.00
2959 3677 1.076777 CCAAGGTACCCCATGCCAG 60.077 63.158 8.74 0.00 34.94 4.85
2960 3678 0.550393 TACCAAGGTACCCCATGCCA 60.550 55.000 8.74 0.00 34.94 4.92
2961 3679 0.106868 GTACCAAGGTACCCCATGCC 60.107 60.000 16.78 0.00 43.60 4.40
2986 3704 5.538813 TGCCAGTATCTCCGACAGTATTAAT 59.461 40.000 0.00 0.00 0.00 1.40
2990 3708 2.945456 TGCCAGTATCTCCGACAGTAT 58.055 47.619 0.00 0.00 0.00 2.12
2991 3709 2.430248 TGCCAGTATCTCCGACAGTA 57.570 50.000 0.00 0.00 0.00 2.74
2992 3710 1.781786 ATGCCAGTATCTCCGACAGT 58.218 50.000 0.00 0.00 0.00 3.55
2993 3711 3.149981 TCTATGCCAGTATCTCCGACAG 58.850 50.000 0.00 0.00 0.00 3.51
2994 3712 3.223674 TCTATGCCAGTATCTCCGACA 57.776 47.619 0.00 0.00 0.00 4.35
2995 3713 4.218635 TGAATCTATGCCAGTATCTCCGAC 59.781 45.833 0.00 0.00 0.00 4.79
3024 3742 6.874288 AGTTATATCCGAGTAGTAAAGCGT 57.126 37.500 0.00 0.00 0.00 5.07
3025 3743 7.358066 TGAAGTTATATCCGAGTAGTAAAGCG 58.642 38.462 0.00 0.00 0.00 4.68
3035 3753 9.146984 TGTTGTTAGTTTGAAGTTATATCCGAG 57.853 33.333 0.00 0.00 0.00 4.63
3078 3796 9.908747 GGAGGAAGCAGTAGATAGAAGTATATA 57.091 37.037 0.00 0.00 0.00 0.86
3079 3797 8.394822 TGGAGGAAGCAGTAGATAGAAGTATAT 58.605 37.037 0.00 0.00 0.00 0.86
3080 3798 7.756614 TGGAGGAAGCAGTAGATAGAAGTATA 58.243 38.462 0.00 0.00 0.00 1.47
3081 3799 6.615617 TGGAGGAAGCAGTAGATAGAAGTAT 58.384 40.000 0.00 0.00 0.00 2.12
3082 3800 6.014771 TGGAGGAAGCAGTAGATAGAAGTA 57.985 41.667 0.00 0.00 0.00 2.24
3083 3801 4.873010 TGGAGGAAGCAGTAGATAGAAGT 58.127 43.478 0.00 0.00 0.00 3.01
3084 3802 5.047377 GGATGGAGGAAGCAGTAGATAGAAG 60.047 48.000 0.00 0.00 0.00 2.85
3085 3803 4.835615 GGATGGAGGAAGCAGTAGATAGAA 59.164 45.833 0.00 0.00 0.00 2.10
3086 3804 4.411927 GGATGGAGGAAGCAGTAGATAGA 58.588 47.826 0.00 0.00 0.00 1.98
3087 3805 3.513515 GGGATGGAGGAAGCAGTAGATAG 59.486 52.174 0.00 0.00 0.00 2.08
3088 3806 3.511477 GGGATGGAGGAAGCAGTAGATA 58.489 50.000 0.00 0.00 0.00 1.98
3089 3807 2.334023 GGGATGGAGGAAGCAGTAGAT 58.666 52.381 0.00 0.00 0.00 1.98
3090 3808 1.794714 GGGATGGAGGAAGCAGTAGA 58.205 55.000 0.00 0.00 0.00 2.59
3091 3809 0.390860 CGGGATGGAGGAAGCAGTAG 59.609 60.000 0.00 0.00 0.00 2.57
3092 3810 0.032515 TCGGGATGGAGGAAGCAGTA 60.033 55.000 0.00 0.00 0.00 2.74
3093 3811 0.909610 TTCGGGATGGAGGAAGCAGT 60.910 55.000 0.00 0.00 0.00 4.40
3094 3812 0.253044 TTTCGGGATGGAGGAAGCAG 59.747 55.000 0.00 0.00 0.00 4.24
3095 3813 0.918983 ATTTCGGGATGGAGGAAGCA 59.081 50.000 0.00 0.00 0.00 3.91
3096 3814 2.104963 AGTATTTCGGGATGGAGGAAGC 59.895 50.000 0.00 0.00 0.00 3.86
3097 3815 4.130118 CAAGTATTTCGGGATGGAGGAAG 58.870 47.826 0.00 0.00 0.00 3.46
3098 3816 3.521937 ACAAGTATTTCGGGATGGAGGAA 59.478 43.478 0.00 0.00 0.00 3.36
3099 3817 3.112263 ACAAGTATTTCGGGATGGAGGA 58.888 45.455 0.00 0.00 0.00 3.71
3100 3818 3.467803 GACAAGTATTTCGGGATGGAGG 58.532 50.000 0.00 0.00 0.00 4.30
3101 3819 3.123804 CGACAAGTATTTCGGGATGGAG 58.876 50.000 0.00 0.00 0.00 3.86
3102 3820 2.761767 TCGACAAGTATTTCGGGATGGA 59.238 45.455 0.00 0.00 35.89 3.41
3103 3821 3.173668 TCGACAAGTATTTCGGGATGG 57.826 47.619 0.00 0.00 35.89 3.51
3104 3822 4.430007 TCTTCGACAAGTATTTCGGGATG 58.570 43.478 0.00 0.00 35.89 3.51
3105 3823 4.730949 TCTTCGACAAGTATTTCGGGAT 57.269 40.909 0.00 0.00 35.89 3.85
3106 3824 4.524316 TTCTTCGACAAGTATTTCGGGA 57.476 40.909 0.00 0.00 35.89 5.14
3107 3825 5.796350 ATTTCTTCGACAAGTATTTCGGG 57.204 39.130 0.00 0.00 35.89 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.