Multiple sequence alignment - TraesCS5D01G411500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G411500 chr5D 100.000 6572 0 0 1 6572 474824675 474818104 0.000000e+00 12137
1 TraesCS5D01G411500 chr5D 88.797 3392 311 33 1276 4638 464104923 464108274 0.000000e+00 4095
2 TraesCS5D01G411500 chr5D 86.585 1722 177 22 4639 6348 464108316 464109995 0.000000e+00 1851
3 TraesCS5D01G411500 chr5D 94.714 227 12 0 6345 6571 283102632 283102858 2.920000e-93 353
4 TraesCS5D01G411500 chr5D 93.860 228 14 0 6345 6572 486862588 486862815 1.750000e-90 344
5 TraesCS5D01G411500 chr5B 87.588 4987 480 66 1402 6335 571200660 571205560 0.000000e+00 5651
6 TraesCS5D01G411500 chr5B 90.198 2071 156 25 60 2115 582119233 582117195 0.000000e+00 2656
7 TraesCS5D01G411500 chr5B 92.362 1689 114 8 4639 6313 582107180 582105493 0.000000e+00 2390
8 TraesCS5D01G411500 chr5B 91.901 1494 105 6 2140 3628 582117200 582115718 0.000000e+00 2074
9 TraesCS5D01G411500 chr5B 90.453 1037 70 11 3625 4638 582108292 582107262 0.000000e+00 1339
10 TraesCS5D01G411500 chr7B 87.534 4067 426 36 2323 6348 626566803 626562777 0.000000e+00 4626
11 TraesCS5D01G411500 chr7B 87.839 995 110 7 1276 2266 626567808 626566821 0.000000e+00 1157
12 TraesCS5D01G411500 chr7B 83.743 732 106 13 2 729 204821246 204821968 0.000000e+00 680
13 TraesCS5D01G411500 chr7B 94.737 228 12 0 6345 6572 581381251 581381024 8.110000e-94 355
14 TraesCS5D01G411500 chr7B 77.985 268 48 11 1002 1263 276992884 276993146 2.450000e-34 158
15 TraesCS5D01G411500 chr2A 81.141 4979 710 130 1267 6165 692359554 692354725 0.000000e+00 3781
16 TraesCS5D01G411500 chr2A 82.024 4150 574 103 1280 5383 692273588 692269565 0.000000e+00 3373
17 TraesCS5D01G411500 chr2A 79.434 2932 456 83 2971 5849 692328250 692325413 0.000000e+00 1938
18 TraesCS5D01G411500 chr2A 83.007 1683 207 43 1542 3203 715437436 715435812 0.000000e+00 1450
19 TraesCS5D01G411500 chr2A 85.554 713 91 12 1 712 170547240 170547941 0.000000e+00 736
20 TraesCS5D01G411500 chr2A 80.756 582 96 13 4981 5555 715422426 715421854 2.180000e-119 440
21 TraesCS5D01G411500 chr2A 82.083 240 31 12 5928 6163 692276239 692276008 1.870000e-45 195
22 TraesCS5D01G411500 chr5A 86.893 3380 345 37 1281 4634 584547970 584551277 0.000000e+00 3698
23 TraesCS5D01G411500 chr5A 85.499 1724 195 28 4639 6348 584551354 584553036 0.000000e+00 1748
24 TraesCS5D01G411500 chr7A 86.983 2973 290 37 3412 6348 660081004 660083915 0.000000e+00 3256
25 TraesCS5D01G411500 chr7A 88.656 2151 192 22 1276 3416 660067957 660070065 0.000000e+00 2573
26 TraesCS5D01G411500 chr2D 84.953 3097 388 45 1267 4337 551823765 551820721 0.000000e+00 3066
27 TraesCS5D01G411500 chr2D 83.807 1303 152 32 1280 2572 577365091 577363838 0.000000e+00 1182
28 TraesCS5D01G411500 chr2D 83.423 1303 156 32 1280 2572 577360814 577359562 0.000000e+00 1155
29 TraesCS5D01G411500 chr2D 79.022 1063 153 33 4347 5383 551809447 551808429 0.000000e+00 664
30 TraesCS5D01G411500 chr2D 82.670 427 64 8 3285 3703 577344481 577344057 2.890000e-98 370
31 TraesCS5D01G411500 chr2D 94.737 228 12 0 6345 6572 651564470 651564697 8.110000e-94 355
32 TraesCS5D01G411500 chr2D 94.643 224 12 0 6348 6571 557881220 557880997 1.360000e-91 348
33 TraesCS5D01G411500 chr2D 93.860 228 14 0 6345 6572 373747485 373747712 1.750000e-90 344
34 TraesCS5D01G411500 chr2D 93.860 228 14 0 6345 6572 608438825 608438598 1.750000e-90 344
35 TraesCS5D01G411500 chr2D 80.736 462 55 20 5710 6165 551826602 551826169 4.910000e-86 329
36 TraesCS5D01G411500 chr2D 80.312 320 60 2 5380 5699 551716324 551716008 8.520000e-59 239
37 TraesCS5D01G411500 chr2D 78.500 200 20 9 6162 6353 551706073 551705889 6.970000e-20 110
38 TraesCS5D01G411500 chr7D 88.942 1456 149 8 4691 6136 570988183 570989636 0.000000e+00 1786
39 TraesCS5D01G411500 chr7D 84.701 1255 173 19 21 1269 295601058 295599817 0.000000e+00 1236
40 TraesCS5D01G411500 chr7D 87.914 1026 108 7 3622 4639 570978335 570979352 0.000000e+00 1194
41 TraesCS5D01G411500 chr7D 79.564 1101 199 24 1 1091 259694832 259693748 0.000000e+00 763
42 TraesCS5D01G411500 chr7D 92.727 220 15 1 6130 6348 570992317 570992536 3.820000e-82 316
43 TraesCS5D01G411500 chrUn 83.605 1226 142 32 1280 2495 421373884 421372708 0.000000e+00 1096
44 TraesCS5D01G411500 chrUn 93.860 228 14 0 6345 6572 29820721 29820948 1.750000e-90 344
45 TraesCS5D01G411500 chrUn 82.323 396 62 6 876 1269 116029645 116029256 2.940000e-88 337
46 TraesCS5D01G411500 chrUn 76.777 211 35 11 1060 1264 321116725 321116523 9.010000e-19 106
47 TraesCS5D01G411500 chr3D 79.844 1280 223 33 1 1263 93169390 93170651 0.000000e+00 902
48 TraesCS5D01G411500 chr3D 93.860 228 14 0 6345 6572 565263503 565263276 1.750000e-90 344
49 TraesCS5D01G411500 chr3A 84.962 798 105 12 1 797 419305220 419306003 0.000000e+00 795
50 TraesCS5D01G411500 chr2B 77.600 1250 243 32 1 1233 579603482 579602253 0.000000e+00 723
51 TraesCS5D01G411500 chr2B 76.777 211 35 11 1060 1264 176489863 176489661 9.010000e-19 106
52 TraesCS5D01G411500 chr4B 77.025 1284 245 46 2 1264 404819031 404820285 0.000000e+00 691
53 TraesCS5D01G411500 chr1D 79.036 892 157 27 11 895 463960937 463961805 9.500000e-163 584
54 TraesCS5D01G411500 chr1D 75.878 1310 222 79 1 1261 456074710 456075974 3.420000e-162 582


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G411500 chr5D 474818104 474824675 6571 True 12137.0 12137 100.0000 1 6572 1 chr5D.!!$R1 6571
1 TraesCS5D01G411500 chr5D 464104923 464109995 5072 False 2973.0 4095 87.6910 1276 6348 2 chr5D.!!$F3 5072
2 TraesCS5D01G411500 chr5B 571200660 571205560 4900 False 5651.0 5651 87.5880 1402 6335 1 chr5B.!!$F1 4933
3 TraesCS5D01G411500 chr5B 582115718 582119233 3515 True 2365.0 2656 91.0495 60 3628 2 chr5B.!!$R2 3568
4 TraesCS5D01G411500 chr5B 582105493 582108292 2799 True 1864.5 2390 91.4075 3625 6313 2 chr5B.!!$R1 2688
5 TraesCS5D01G411500 chr7B 626562777 626567808 5031 True 2891.5 4626 87.6865 1276 6348 2 chr7B.!!$R2 5072
6 TraesCS5D01G411500 chr7B 204821246 204821968 722 False 680.0 680 83.7430 2 729 1 chr7B.!!$F1 727
7 TraesCS5D01G411500 chr2A 692354725 692359554 4829 True 3781.0 3781 81.1410 1267 6165 1 chr2A.!!$R2 4898
8 TraesCS5D01G411500 chr2A 692325413 692328250 2837 True 1938.0 1938 79.4340 2971 5849 1 chr2A.!!$R1 2878
9 TraesCS5D01G411500 chr2A 692269565 692276239 6674 True 1784.0 3373 82.0535 1280 6163 2 chr2A.!!$R5 4883
10 TraesCS5D01G411500 chr2A 715435812 715437436 1624 True 1450.0 1450 83.0070 1542 3203 1 chr2A.!!$R4 1661
11 TraesCS5D01G411500 chr2A 170547240 170547941 701 False 736.0 736 85.5540 1 712 1 chr2A.!!$F1 711
12 TraesCS5D01G411500 chr2A 715421854 715422426 572 True 440.0 440 80.7560 4981 5555 1 chr2A.!!$R3 574
13 TraesCS5D01G411500 chr5A 584547970 584553036 5066 False 2723.0 3698 86.1960 1281 6348 2 chr5A.!!$F1 5067
14 TraesCS5D01G411500 chr7A 660081004 660083915 2911 False 3256.0 3256 86.9830 3412 6348 1 chr7A.!!$F2 2936
15 TraesCS5D01G411500 chr7A 660067957 660070065 2108 False 2573.0 2573 88.6560 1276 3416 1 chr7A.!!$F1 2140
16 TraesCS5D01G411500 chr2D 551820721 551826602 5881 True 1697.5 3066 82.8445 1267 6165 2 chr2D.!!$R7 4898
17 TraesCS5D01G411500 chr2D 577359562 577365091 5529 True 1168.5 1182 83.6150 1280 2572 2 chr2D.!!$R8 1292
18 TraesCS5D01G411500 chr2D 551808429 551809447 1018 True 664.0 664 79.0220 4347 5383 1 chr2D.!!$R3 1036
19 TraesCS5D01G411500 chr7D 295599817 295601058 1241 True 1236.0 1236 84.7010 21 1269 1 chr7D.!!$R2 1248
20 TraesCS5D01G411500 chr7D 570978335 570979352 1017 False 1194.0 1194 87.9140 3622 4639 1 chr7D.!!$F1 1017
21 TraesCS5D01G411500 chr7D 570988183 570992536 4353 False 1051.0 1786 90.8345 4691 6348 2 chr7D.!!$F2 1657
22 TraesCS5D01G411500 chr7D 259693748 259694832 1084 True 763.0 763 79.5640 1 1091 1 chr7D.!!$R1 1090
23 TraesCS5D01G411500 chrUn 421372708 421373884 1176 True 1096.0 1096 83.6050 1280 2495 1 chrUn.!!$R3 1215
24 TraesCS5D01G411500 chr3D 93169390 93170651 1261 False 902.0 902 79.8440 1 1263 1 chr3D.!!$F1 1262
25 TraesCS5D01G411500 chr3A 419305220 419306003 783 False 795.0 795 84.9620 1 797 1 chr3A.!!$F1 796
26 TraesCS5D01G411500 chr2B 579602253 579603482 1229 True 723.0 723 77.6000 1 1233 1 chr2B.!!$R2 1232
27 TraesCS5D01G411500 chr4B 404819031 404820285 1254 False 691.0 691 77.0250 2 1264 1 chr4B.!!$F1 1262
28 TraesCS5D01G411500 chr1D 463960937 463961805 868 False 584.0 584 79.0360 11 895 1 chr1D.!!$F2 884
29 TraesCS5D01G411500 chr1D 456074710 456075974 1264 False 582.0 582 75.8780 1 1261 1 chr1D.!!$F1 1260

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
817 859 0.036388 CGCTGCCTCCCTAGAAACAA 60.036 55.000 0.00 0.0 0.00 2.83 F
818 860 1.407437 CGCTGCCTCCCTAGAAACAAT 60.407 52.381 0.00 0.0 0.00 2.71 F
1083 1134 1.762957 TCCCGATCTCTTTCCATGGAC 59.237 52.381 15.91 0.0 0.00 4.02 F
1868 3497 1.904287 AGTGTGCCTCGCCAAAATAA 58.096 45.000 0.00 0.0 0.00 1.40 F
3257 5264 0.829333 TGCATGTTTGGGTTGTGCTT 59.171 45.000 0.00 0.0 36.78 3.91 F
4634 6921 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.0 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2127 3774 0.976641 ACTCGAGGGCTGAATCAACA 59.023 50.000 18.41 0.00 0.00 3.33 R
2136 3783 1.001406 CTCAAGTTTCACTCGAGGGCT 59.999 52.381 18.41 1.96 0.00 5.19 R
2137 3784 1.270358 ACTCAAGTTTCACTCGAGGGC 60.270 52.381 18.41 0.00 0.00 5.19 R
3832 6048 0.250467 ATCGTCCTGCTGTTGTTGCT 60.250 50.000 0.00 0.00 0.00 3.91 R
5237 7828 0.173481 TACGATCAGCCAGTGAGCAC 59.827 55.000 6.40 0.00 42.09 4.40 R
6499 12626 0.034089 AGCCAAGCATACCTGGGAAC 60.034 55.000 0.00 0.00 36.68 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 4.999311 GCCTTTGGATGAAGCAAGATTTTT 59.001 37.500 0.00 0.00 0.00 1.94
137 138 6.585695 AAGGCATGAGCTAAATATCATTGG 57.414 37.500 0.00 0.00 41.70 3.16
167 168 3.458872 TGGCTTGAATCTAGGCACG 57.541 52.632 15.86 0.00 42.46 5.34
229 236 3.201290 CATGGACATAGGAGAGTGTTGC 58.799 50.000 0.00 0.00 0.00 4.17
324 332 4.154918 GGTACTTGTGCTTCAAAGATGAGG 59.845 45.833 0.00 0.00 36.78 3.86
415 427 0.738389 CACCGCTCCTCTCTCTCTTC 59.262 60.000 0.00 0.00 0.00 2.87
443 461 1.104630 GGTTGGTTTCCGTTTGACCA 58.895 50.000 0.00 0.00 41.46 4.02
517 549 6.928520 AGTATTGGCCTTTCTTGATTTCTTG 58.071 36.000 3.32 0.00 0.00 3.02
708 749 2.805546 GCTGTATCGTCCCAGCGA 59.194 61.111 7.08 0.00 43.99 4.93
763 805 1.133356 TCTCTCCAGCCTATGCAGCTA 60.133 52.381 0.00 0.00 38.95 3.32
812 854 0.478942 ACTATCGCTGCCTCCCTAGA 59.521 55.000 0.00 0.00 0.00 2.43
817 859 0.036388 CGCTGCCTCCCTAGAAACAA 60.036 55.000 0.00 0.00 0.00 2.83
818 860 1.407437 CGCTGCCTCCCTAGAAACAAT 60.407 52.381 0.00 0.00 0.00 2.71
823 865 5.221742 GCTGCCTCCCTAGAAACAATAGTAT 60.222 44.000 0.00 0.00 0.00 2.12
838 880 5.221581 ACAATAGTATCACCCGTAATCCCAC 60.222 44.000 0.00 0.00 0.00 4.61
915 961 4.025647 GTCGAGGCATGTATTTAAGCACTC 60.026 45.833 0.00 0.00 0.00 3.51
920 966 2.032680 TGTATTTAAGCACTCGGGCC 57.967 50.000 0.00 0.00 0.00 5.80
1083 1134 1.762957 TCCCGATCTCTTTCCATGGAC 59.237 52.381 15.91 0.00 0.00 4.02
1269 1329 2.496899 AGATTCACATCCCGCTTGTT 57.503 45.000 0.00 0.00 0.00 2.83
1302 2878 9.107177 CTGAATGTTTTACTTGAGCATAGATCT 57.893 33.333 0.00 0.00 0.00 2.75
1435 3037 3.378112 TGTCATCCTCGCAATGGAAATTC 59.622 43.478 0.00 0.00 37.13 2.17
1593 3213 5.765182 CCTTTTCTCTTGTGATAACCACTGT 59.235 40.000 0.00 0.00 45.86 3.55
1649 3277 5.869579 AGGCAAGGATGGTAATATACACAG 58.130 41.667 0.00 0.00 0.00 3.66
1762 3391 7.859875 GCAAATTCTCTAGAAGGATAAACATGC 59.140 37.037 0.00 0.00 37.48 4.06
1766 3395 5.540337 TCTCTAGAAGGATAAACATGCGGAT 59.460 40.000 0.00 0.00 0.00 4.18
1776 3405 2.696989 ACATGCGGATCACATGAAGA 57.303 45.000 26.09 0.00 46.33 2.87
1790 3419 9.368674 GATCACATGAAGATCTATTAGTGGATG 57.631 37.037 18.98 0.00 39.01 3.51
1812 3441 7.939039 GGATGGATCTGATAAGGTATCAAAACA 59.061 37.037 0.00 0.00 43.98 2.83
1868 3497 1.904287 AGTGTGCCTCGCCAAAATAA 58.096 45.000 0.00 0.00 0.00 1.40
1939 3574 4.277174 TGCACTCGTGTGTCCAATATTTTT 59.723 37.500 18.01 0.00 45.44 1.94
2062 3707 8.833231 TCTGTAGGAGTGTTCTTGAAAATAAG 57.167 34.615 0.00 0.00 0.00 1.73
2067 3712 8.100508 AGGAGTGTTCTTGAAAATAAGTAAGC 57.899 34.615 0.00 0.00 0.00 3.09
2110 3757 6.937436 ATAGTCGGAACAATAATCCAAACC 57.063 37.500 0.00 0.00 36.74 3.27
2111 3758 4.918588 AGTCGGAACAATAATCCAAACCT 58.081 39.130 0.00 0.00 36.74 3.50
2112 3759 4.700213 AGTCGGAACAATAATCCAAACCTG 59.300 41.667 0.00 0.00 36.74 4.00
2113 3760 4.013728 TCGGAACAATAATCCAAACCTGG 58.986 43.478 0.00 0.00 45.08 4.45
2123 3770 2.800881 CCAAACCTGGAAAGCACTTC 57.199 50.000 0.00 0.00 46.92 3.01
2124 3771 2.031120 CCAAACCTGGAAAGCACTTCA 58.969 47.619 0.00 0.00 46.92 3.02
2125 3772 2.629617 CCAAACCTGGAAAGCACTTCAT 59.370 45.455 0.00 0.00 46.92 2.57
2126 3773 3.826157 CCAAACCTGGAAAGCACTTCATA 59.174 43.478 0.00 0.00 46.92 2.15
2127 3774 4.463891 CCAAACCTGGAAAGCACTTCATAT 59.536 41.667 0.00 0.00 46.92 1.78
2128 3775 5.404946 CAAACCTGGAAAGCACTTCATATG 58.595 41.667 0.00 0.00 35.55 1.78
2129 3776 4.307032 ACCTGGAAAGCACTTCATATGT 57.693 40.909 0.00 0.00 35.55 2.29
2130 3777 4.666512 ACCTGGAAAGCACTTCATATGTT 58.333 39.130 0.00 0.00 35.55 2.71
2131 3778 4.460382 ACCTGGAAAGCACTTCATATGTTG 59.540 41.667 0.00 0.38 35.55 3.33
2132 3779 4.701651 CCTGGAAAGCACTTCATATGTTGA 59.298 41.667 1.90 0.00 35.55 3.18
2133 3780 5.359009 CCTGGAAAGCACTTCATATGTTGAT 59.641 40.000 1.90 0.00 35.55 2.57
2134 3781 6.127535 CCTGGAAAGCACTTCATATGTTGATT 60.128 38.462 1.90 1.46 35.55 2.57
2135 3782 6.855836 TGGAAAGCACTTCATATGTTGATTC 58.144 36.000 1.90 7.17 35.55 2.52
2136 3783 6.433716 TGGAAAGCACTTCATATGTTGATTCA 59.566 34.615 1.90 0.00 35.55 2.57
2137 3784 6.971184 GGAAAGCACTTCATATGTTGATTCAG 59.029 38.462 1.90 0.00 35.55 3.02
2138 3785 5.496133 AGCACTTCATATGTTGATTCAGC 57.504 39.130 1.90 0.00 33.34 4.26
2139 3786 4.337555 AGCACTTCATATGTTGATTCAGCC 59.662 41.667 1.90 0.00 33.34 4.85
2142 3789 5.008415 CACTTCATATGTTGATTCAGCCCTC 59.992 44.000 1.90 0.00 33.34 4.30
2178 3886 8.846943 TGAGTGGTATTATATGCCATTGTTAG 57.153 34.615 0.00 0.00 46.76 2.34
2188 3904 3.065655 TGCCATTGTTAGCATTGCAAAC 58.934 40.909 11.91 0.00 33.08 2.93
2202 3918 7.202526 AGCATTGCAAACGTATTATGCTAATT 58.797 30.769 16.10 0.00 44.79 1.40
2381 4098 5.456822 CACGAAAGAGAAAAGGAAGCAAAAG 59.543 40.000 0.00 0.00 0.00 2.27
2427 4144 5.415077 ACAGAGGAGAAGCAAAATTCATCAG 59.585 40.000 0.00 0.00 0.00 2.90
2581 4307 4.582973 AGGAAAGAAAGGAGGAGAATGG 57.417 45.455 0.00 0.00 0.00 3.16
2611 4337 3.279504 AAGAGCAGGGGCAGGAAGC 62.280 63.158 0.00 0.00 44.61 3.86
2675 4401 3.393941 AGGAGATAAATGAGCAGAAGGGG 59.606 47.826 0.00 0.00 0.00 4.79
2700 4426 5.045505 AGGAAGGAGAATGGTAAAGAGGAAC 60.046 44.000 0.00 0.00 0.00 3.62
2778 4504 2.325484 TCTTTAGGGCGCTCATATCCA 58.675 47.619 11.40 0.00 0.00 3.41
2876 4604 8.885346 TGTTCCATTTTTACCTCCCATATTTTT 58.115 29.630 0.00 0.00 0.00 1.94
2877 4605 9.378551 GTTCCATTTTTACCTCCCATATTTTTC 57.621 33.333 0.00 0.00 0.00 2.29
2888 4616 9.492730 ACCTCCCATATTTTTCTATGATTGTTT 57.507 29.630 0.00 0.00 31.92 2.83
2944 4746 7.293073 AGGAATGGTGCTCACTAATTTGATAT 58.707 34.615 0.00 0.00 0.00 1.63
3060 5064 9.399403 GTTTTCTGTCATTGAGAAGGATAAAAC 57.601 33.333 0.00 0.00 31.17 2.43
3257 5264 0.829333 TGCATGTTTGGGTTGTGCTT 59.171 45.000 0.00 0.00 36.78 3.91
3359 5366 4.588899 TGGAAGATTGTACAGGAATGGTG 58.411 43.478 0.00 0.00 0.00 4.17
3365 5372 3.193395 TGTACAGGAATGGTGTCCCTA 57.807 47.619 0.00 0.00 38.59 3.53
3533 5702 6.018262 CACAATTCTCAGTGACGGTTTTCTTA 60.018 38.462 0.00 0.00 37.97 2.10
3666 5841 2.807045 CGCAAGAAGACGCTCGCT 60.807 61.111 0.00 0.00 43.02 4.93
3712 5928 4.646492 ACCACAAAATGAAGCTTCAGAAGT 59.354 37.500 31.14 22.85 41.08 3.01
3786 6002 2.093973 TCAGAAACTCCGGAGAATGAGC 60.094 50.000 37.69 18.52 0.00 4.26
3808 6024 2.798680 AGACTATGAACGTCGCATGTC 58.201 47.619 12.56 15.05 36.53 3.06
3832 6048 3.510388 CAACGATGCTCTAGAACCAGA 57.490 47.619 0.00 0.00 0.00 3.86
4084 6321 9.858247 GATCGATTTCAAAATAATTAGTACGCA 57.142 29.630 0.00 0.00 0.00 5.24
4122 6359 9.453572 CTGTATATATTGGTATGTGATGGCTTT 57.546 33.333 0.00 0.00 0.00 3.51
4338 6575 8.738199 CATTGGATGGATCGATTTCAAATTAG 57.262 34.615 0.00 0.00 0.00 1.73
4403 6645 5.069251 GGCTCTTGTTATCTAGCTAACCTGA 59.931 44.000 12.68 9.85 35.30 3.86
4569 6816 4.701956 AAGAAACAACACCAAGTGACAG 57.298 40.909 0.96 0.00 36.96 3.51
4634 6921 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
4637 7046 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4676 7085 8.783093 CATAGACCTATCTATATGCTCTGCTAC 58.217 40.741 0.00 0.00 44.89 3.58
4700 7111 6.839657 ACCTACATAGCAGTGGTCTTATACTT 59.160 38.462 0.00 0.00 0.00 2.24
4844 7261 9.582648 AATCTTTTGGTAAAAGGCTTAGTAAGA 57.417 29.630 14.27 4.07 46.11 2.10
4948 7409 1.003839 CCTTCCTGTAAGTGCGCCA 60.004 57.895 4.18 0.00 32.89 5.69
4956 7418 4.461081 TCCTGTAAGTGCGCCATTTTATTT 59.539 37.500 4.18 0.00 0.00 1.40
5063 7543 1.308998 GCCGGGATTAACATCACAGG 58.691 55.000 2.18 0.00 31.31 4.00
5147 7627 1.827399 GAGGCCCTTCACCGTCAAGA 61.827 60.000 0.00 0.00 0.00 3.02
5167 7679 3.565482 AGACAATGAAGCACAACGATGTT 59.435 39.130 0.00 0.00 37.82 2.71
5173 7685 3.251972 TGAAGCACAACGATGTTTATGCA 59.748 39.130 14.59 0.00 37.82 3.96
5207 7719 9.820725 TCATGGTAATTGATCAATTTGATTTCC 57.179 29.630 32.57 23.54 40.99 3.13
5230 7820 7.287061 TCCCCTTTCGATACACATATTCAAAT 58.713 34.615 0.00 0.00 0.00 2.32
5237 7828 8.298030 TCGATACACATATTCAAATACTGCAG 57.702 34.615 13.48 13.48 0.00 4.41
5311 8064 2.147958 TCGTGAAAACATTTCTCCCCG 58.852 47.619 4.65 2.76 0.00 5.73
5334 8087 5.392165 CGAAGAGAGTAGGAAGATGACGTTT 60.392 44.000 0.00 0.00 0.00 3.60
5556 8648 1.969064 CGTCATCGCCCCAAAACCA 60.969 57.895 0.00 0.00 0.00 3.67
5559 8651 2.114411 ATCGCCCCAAAACCACGT 59.886 55.556 0.00 0.00 0.00 4.49
5577 8671 5.163764 ACCACGTACATGCAAGTGATAATTG 60.164 40.000 12.91 0.00 36.79 2.32
5594 8688 1.685148 TTGGCCCCAAAATGTTTTGC 58.315 45.000 11.70 2.46 44.62 3.68
5597 8691 1.522668 GCCCCAAAATGTTTTGCTCC 58.477 50.000 11.70 0.41 44.62 4.70
5708 9029 9.794719 AGGCTAATTACTGGATTATAAGGAAAC 57.205 33.333 0.00 0.00 0.00 2.78
5719 9040 7.390440 TGGATTATAAGGAAACGATAAGCATGG 59.610 37.037 0.00 0.00 33.66 3.66
5780 9101 3.443052 TCATAACCTAGGGTTTCCGTCA 58.557 45.455 14.81 0.00 44.33 4.35
5790 9111 1.467374 GGTTTCCGTCATTGCCGAATG 60.467 52.381 0.00 0.00 40.47 2.67
5847 9176 2.026014 CCACTGCGCCACAACAAC 59.974 61.111 4.18 0.00 0.00 3.32
5877 9218 6.726379 TGTATCGGATGGATCTCTTATCTCT 58.274 40.000 0.00 0.00 36.55 3.10
6009 9351 6.367149 CAGATCTAAGCTAGCGCAATTGAATA 59.633 38.462 11.47 0.00 39.10 1.75
6014 9356 9.051679 TCTAAGCTAGCGCAATTGAATATTTAA 57.948 29.630 11.47 0.00 39.10 1.52
6016 9358 7.026631 AGCTAGCGCAATTGAATATTTAACA 57.973 32.000 11.47 0.00 39.10 2.41
6067 9409 7.121463 TCGGCTTAGGATTCTAGACATAATCTC 59.879 40.741 0.00 0.00 39.04 2.75
6130 9472 5.018539 TGGTGTATCCATGTTGCTAGTAC 57.981 43.478 0.00 0.00 41.93 2.73
6131 9473 4.714802 TGGTGTATCCATGTTGCTAGTACT 59.285 41.667 0.00 0.00 41.93 2.73
6190 12223 5.836024 TGTGGGATGTAACTAGAGGTTTT 57.164 39.130 0.00 0.00 39.17 2.43
6335 12462 4.899352 ACCTTTTCTGCAGTGATAGTCT 57.101 40.909 14.67 0.00 0.00 3.24
6340 12467 4.890158 TTCTGCAGTGATAGTCTTTGGA 57.110 40.909 14.67 0.00 0.00 3.53
6351 12478 6.818644 GTGATAGTCTTTGGATTGCTAGTTGA 59.181 38.462 0.00 0.00 0.00 3.18
6352 12479 7.497249 GTGATAGTCTTTGGATTGCTAGTTGAT 59.503 37.037 0.00 0.00 0.00 2.57
6353 12480 7.496920 TGATAGTCTTTGGATTGCTAGTTGATG 59.503 37.037 0.00 0.00 0.00 3.07
6354 12481 5.809001 AGTCTTTGGATTGCTAGTTGATGA 58.191 37.500 0.00 0.00 0.00 2.92
6355 12482 5.645497 AGTCTTTGGATTGCTAGTTGATGAC 59.355 40.000 0.00 0.00 0.00 3.06
6356 12483 4.943705 TCTTTGGATTGCTAGTTGATGACC 59.056 41.667 0.00 0.00 0.00 4.02
6359 12486 3.264193 TGGATTGCTAGTTGATGACCACT 59.736 43.478 0.00 0.00 0.00 4.00
6361 12488 4.095483 GGATTGCTAGTTGATGACCACTTG 59.905 45.833 0.00 0.00 0.00 3.16
6362 12489 3.057969 TGCTAGTTGATGACCACTTGG 57.942 47.619 0.00 0.00 42.17 3.61
6364 12491 2.359900 CTAGTTGATGACCACTTGGCC 58.640 52.381 0.00 0.00 39.32 5.36
6365 12492 0.478072 AGTTGATGACCACTTGGCCA 59.522 50.000 0.00 0.00 39.32 5.36
6366 12493 1.076024 AGTTGATGACCACTTGGCCAT 59.924 47.619 6.09 0.00 41.16 4.40
6367 12494 1.203052 GTTGATGACCACTTGGCCATG 59.797 52.381 16.76 16.76 38.45 3.66
6368 12495 0.323633 TGATGACCACTTGGCCATGG 60.324 55.000 21.71 21.71 38.45 3.66
6369 12496 1.000739 ATGACCACTTGGCCATGGG 59.999 57.895 25.80 20.53 36.90 4.00
6370 12497 1.803453 ATGACCACTTGGCCATGGGT 61.803 55.000 25.80 24.41 36.90 4.51
6371 12498 1.978617 GACCACTTGGCCATGGGTG 60.979 63.158 25.80 22.81 40.59 4.61
6372 12499 2.424842 GACCACTTGGCCATGGGTGA 62.425 60.000 25.80 1.16 40.59 4.02
6375 12502 0.679002 CACTTGGCCATGGGTGAGAG 60.679 60.000 21.67 9.28 32.12 3.20
6376 12503 1.136329 ACTTGGCCATGGGTGAGAGT 61.136 55.000 21.67 9.94 0.00 3.24
6377 12504 0.393537 CTTGGCCATGGGTGAGAGTC 60.394 60.000 15.13 0.00 0.00 3.36
6378 12505 1.133181 TTGGCCATGGGTGAGAGTCA 61.133 55.000 15.13 0.00 0.00 3.41
6379 12506 1.133181 TGGCCATGGGTGAGAGTCAA 61.133 55.000 15.13 0.00 0.00 3.18
6380 12507 0.393537 GGCCATGGGTGAGAGTCAAG 60.394 60.000 15.13 0.00 0.00 3.02
6381 12508 1.028868 GCCATGGGTGAGAGTCAAGC 61.029 60.000 15.13 0.00 0.00 4.01
6382 12509 0.393537 CCATGGGTGAGAGTCAAGCC 60.394 60.000 2.85 7.04 34.44 4.35
6383 12510 4.311700 TGGGTGAGAGTCAAGCCA 57.688 55.556 11.54 11.54 41.52 4.75
6385 12512 0.615331 TGGGTGAGAGTCAAGCCATC 59.385 55.000 11.54 0.00 38.98 3.51
6387 12514 1.211457 GGGTGAGAGTCAAGCCATCAT 59.789 52.381 8.72 0.00 34.02 2.45
6388 12515 2.286872 GGTGAGAGTCAAGCCATCATG 58.713 52.381 0.00 0.00 0.00 3.07
6390 12517 2.676839 GTGAGAGTCAAGCCATCATGTG 59.323 50.000 0.00 0.00 0.00 3.21
6393 12520 2.039480 AGAGTCAAGCCATCATGTGTGT 59.961 45.455 0.00 0.00 0.00 3.72
6394 12521 2.417933 GAGTCAAGCCATCATGTGTGTC 59.582 50.000 0.00 0.00 0.00 3.67
6395 12522 2.153645 GTCAAGCCATCATGTGTGTCA 58.846 47.619 0.00 0.00 0.00 3.58
6397 12524 2.815503 TCAAGCCATCATGTGTGTCAAG 59.184 45.455 0.00 0.00 0.00 3.02
6398 12525 1.171308 AGCCATCATGTGTGTCAAGC 58.829 50.000 0.00 0.00 0.00 4.01
6399 12526 0.179181 GCCATCATGTGTGTCAAGCG 60.179 55.000 0.00 0.00 0.00 4.68
6400 12527 0.179181 CCATCATGTGTGTCAAGCGC 60.179 55.000 0.00 0.00 0.00 5.92
6401 12528 0.800631 CATCATGTGTGTCAAGCGCT 59.199 50.000 2.64 2.64 0.00 5.92
6403 12530 0.867746 TCATGTGTGTCAAGCGCTTC 59.132 50.000 22.21 11.09 0.00 3.86
6404 12531 0.451628 CATGTGTGTCAAGCGCTTCG 60.452 55.000 22.21 15.90 0.00 3.79
6417 12544 1.626654 CGCTTCGCAGTCGGAATTGT 61.627 55.000 0.00 0.00 36.13 2.71
6418 12545 0.179215 GCTTCGCAGTCGGAATTGTG 60.179 55.000 0.00 0.00 36.13 3.33
6419 12546 0.179215 CTTCGCAGTCGGAATTGTGC 60.179 55.000 0.00 0.00 36.13 4.57
6420 12547 0.882484 TTCGCAGTCGGAATTGTGCA 60.882 50.000 0.00 0.00 35.57 4.57
6422 12549 0.453282 CGCAGTCGGAATTGTGCAAG 60.453 55.000 0.00 0.00 35.57 4.01
6424 12551 1.664016 GCAGTCGGAATTGTGCAAGTG 60.664 52.381 0.00 0.00 35.91 3.16
6425 12552 1.603802 CAGTCGGAATTGTGCAAGTGT 59.396 47.619 0.00 0.00 0.00 3.55
6426 12553 2.033299 CAGTCGGAATTGTGCAAGTGTT 59.967 45.455 0.00 0.00 0.00 3.32
6428 12555 2.788786 GTCGGAATTGTGCAAGTGTTTG 59.211 45.455 0.00 0.00 37.36 2.93
6429 12556 2.126467 CGGAATTGTGCAAGTGTTTGG 58.874 47.619 0.00 0.00 34.79 3.28
6430 12557 1.866601 GGAATTGTGCAAGTGTTTGGC 59.133 47.619 0.00 0.00 34.79 4.52
6432 12559 0.106521 ATTGTGCAAGTGTTTGGCCC 59.893 50.000 0.00 0.00 34.79 5.80
6433 12560 2.027460 GTGCAAGTGTTTGGCCCG 59.973 61.111 0.00 0.00 34.79 6.13
6434 12561 3.222855 TGCAAGTGTTTGGCCCGG 61.223 61.111 0.00 0.00 34.79 5.73
6436 12563 2.919494 GCAAGTGTTTGGCCCGGAG 61.919 63.158 0.73 0.00 34.79 4.63
6437 12564 1.528309 CAAGTGTTTGGCCCGGAGT 60.528 57.895 0.73 0.00 0.00 3.85
6438 12565 0.250553 CAAGTGTTTGGCCCGGAGTA 60.251 55.000 0.73 0.00 0.00 2.59
6439 12566 0.696501 AAGTGTTTGGCCCGGAGTAT 59.303 50.000 0.73 0.00 0.00 2.12
6440 12567 0.696501 AGTGTTTGGCCCGGAGTATT 59.303 50.000 0.73 0.00 0.00 1.89
6442 12569 1.201414 GTGTTTGGCCCGGAGTATTTG 59.799 52.381 0.73 0.00 0.00 2.32
6443 12570 1.074084 TGTTTGGCCCGGAGTATTTGA 59.926 47.619 0.73 0.00 0.00 2.69
6444 12571 1.743394 GTTTGGCCCGGAGTATTTGAG 59.257 52.381 0.73 0.00 0.00 3.02
6445 12572 1.281419 TTGGCCCGGAGTATTTGAGA 58.719 50.000 0.73 0.00 0.00 3.27
6446 12573 1.507140 TGGCCCGGAGTATTTGAGAT 58.493 50.000 0.73 0.00 0.00 2.75
6447 12574 1.416401 TGGCCCGGAGTATTTGAGATC 59.584 52.381 0.73 0.00 0.00 2.75
6448 12575 1.694696 GGCCCGGAGTATTTGAGATCT 59.305 52.381 0.73 0.00 0.00 2.75
6449 12576 2.289133 GGCCCGGAGTATTTGAGATCTC 60.289 54.545 16.21 16.21 0.00 2.75
6450 12577 2.289133 GCCCGGAGTATTTGAGATCTCC 60.289 54.545 20.03 4.09 41.91 3.71
6451 12578 2.300437 CCCGGAGTATTTGAGATCTCCC 59.700 54.545 20.03 10.59 42.21 4.30
6452 12579 2.965831 CCGGAGTATTTGAGATCTCCCA 59.034 50.000 20.03 6.83 42.21 4.37
6453 12580 3.388024 CCGGAGTATTTGAGATCTCCCAA 59.612 47.826 20.03 12.86 42.21 4.12
6454 12581 4.040952 CCGGAGTATTTGAGATCTCCCAAT 59.959 45.833 20.03 18.34 42.21 3.16
6456 12583 6.159988 CGGAGTATTTGAGATCTCCCAATAC 58.840 44.000 28.27 28.27 42.21 1.89
6457 12584 6.015010 CGGAGTATTTGAGATCTCCCAATACT 60.015 42.308 33.06 33.06 42.10 2.12
6458 12585 7.176865 CGGAGTATTTGAGATCTCCCAATACTA 59.823 40.741 32.85 14.56 40.91 1.82
6459 12586 8.871125 GGAGTATTTGAGATCTCCCAATACTAA 58.129 37.037 32.85 16.04 40.91 2.24
6464 12591 6.392625 TGAGATCTCCCAATACTAAAGACG 57.607 41.667 20.03 0.00 0.00 4.18
6465 12592 5.203060 AGATCTCCCAATACTAAAGACGC 57.797 43.478 0.00 0.00 0.00 5.19
6466 12593 4.896482 AGATCTCCCAATACTAAAGACGCT 59.104 41.667 0.00 0.00 0.00 5.07
6467 12594 4.386867 TCTCCCAATACTAAAGACGCTG 57.613 45.455 0.00 0.00 0.00 5.18
6468 12595 3.132289 TCTCCCAATACTAAAGACGCTGG 59.868 47.826 0.00 0.00 0.00 4.85
6471 12598 3.871594 CCCAATACTAAAGACGCTGGAAG 59.128 47.826 0.00 0.00 0.00 3.46
6472 12599 3.871594 CCAATACTAAAGACGCTGGAAGG 59.128 47.826 0.00 0.00 0.00 3.46
6473 12600 2.667473 TACTAAAGACGCTGGAAGGC 57.333 50.000 0.00 0.00 0.00 4.35
6478 12605 0.954452 AAGACGCTGGAAGGCTTTTG 59.046 50.000 0.00 0.00 0.00 2.44
6480 12607 0.889186 GACGCTGGAAGGCTTTTGGA 60.889 55.000 0.00 0.00 0.00 3.53
6481 12608 0.890996 ACGCTGGAAGGCTTTTGGAG 60.891 55.000 0.00 0.00 0.00 3.86
6483 12610 1.844687 GCTGGAAGGCTTTTGGAGAT 58.155 50.000 0.00 0.00 0.00 2.75
6484 12611 1.475682 GCTGGAAGGCTTTTGGAGATG 59.524 52.381 0.00 0.00 0.00 2.90
6485 12612 2.881403 GCTGGAAGGCTTTTGGAGATGA 60.881 50.000 0.00 0.00 0.00 2.92
6486 12613 3.424703 CTGGAAGGCTTTTGGAGATGAA 58.575 45.455 0.00 0.00 0.00 2.57
6488 12615 3.157087 GGAAGGCTTTTGGAGATGAACA 58.843 45.455 0.00 0.00 0.00 3.18
6489 12616 3.573967 GGAAGGCTTTTGGAGATGAACAA 59.426 43.478 0.00 0.00 0.00 2.83
6490 12617 4.039124 GGAAGGCTTTTGGAGATGAACAAA 59.961 41.667 0.00 0.00 35.01 2.83
6491 12618 4.861102 AGGCTTTTGGAGATGAACAAAG 57.139 40.909 0.00 0.00 37.80 2.77
6492 12619 3.006217 AGGCTTTTGGAGATGAACAAAGC 59.994 43.478 6.42 6.42 37.80 3.51
6493 12620 3.006217 GGCTTTTGGAGATGAACAAAGCT 59.994 43.478 13.10 0.00 37.80 3.74
6494 12621 4.233005 GCTTTTGGAGATGAACAAAGCTC 58.767 43.478 7.52 0.00 37.80 4.09
6496 12623 2.839486 TGGAGATGAACAAAGCTCGT 57.161 45.000 0.00 0.00 0.00 4.18
6497 12624 2.416747 TGGAGATGAACAAAGCTCGTG 58.583 47.619 0.00 0.00 0.00 4.35
6498 12625 1.734465 GGAGATGAACAAAGCTCGTGG 59.266 52.381 0.00 0.00 0.00 4.94
6499 12626 1.734465 GAGATGAACAAAGCTCGTGGG 59.266 52.381 0.00 0.00 0.00 4.61
6500 12627 1.072331 AGATGAACAAAGCTCGTGGGT 59.928 47.619 0.00 0.00 0.00 4.51
6501 12628 1.880027 GATGAACAAAGCTCGTGGGTT 59.120 47.619 0.00 0.00 37.22 4.11
6503 12630 0.591659 GAACAAAGCTCGTGGGTTCC 59.408 55.000 0.00 0.00 34.22 3.62
6505 12632 1.228124 CAAAGCTCGTGGGTTCCCA 60.228 57.895 6.46 6.46 34.22 4.37
6508 12635 3.637273 GCTCGTGGGTTCCCAGGT 61.637 66.667 23.97 0.00 41.27 4.00
6510 12637 1.623542 GCTCGTGGGTTCCCAGGTAT 61.624 60.000 23.97 0.00 41.27 2.73
6511 12638 0.178068 CTCGTGGGTTCCCAGGTATG 59.822 60.000 23.97 14.59 41.27 2.39
6512 12639 1.451387 CGTGGGTTCCCAGGTATGC 60.451 63.158 18.93 3.69 37.26 3.14
6513 12640 1.910580 CGTGGGTTCCCAGGTATGCT 61.911 60.000 18.93 0.00 37.26 3.79
6514 12641 0.331616 GTGGGTTCCCAGGTATGCTT 59.668 55.000 11.21 0.00 36.70 3.91
6515 12642 0.331278 TGGGTTCCCAGGTATGCTTG 59.669 55.000 6.46 0.00 0.00 4.01
6517 12644 1.037579 GGTTCCCAGGTATGCTTGGC 61.038 60.000 6.42 0.00 40.20 4.52
6518 12645 0.034089 GTTCCCAGGTATGCTTGGCT 60.034 55.000 6.42 0.00 40.20 4.75
6519 12646 0.255890 TTCCCAGGTATGCTTGGCTC 59.744 55.000 6.42 0.00 40.20 4.70
6520 12647 0.913934 TCCCAGGTATGCTTGGCTCA 60.914 55.000 6.42 0.00 40.20 4.26
6521 12648 0.034186 CCCAGGTATGCTTGGCTCAA 60.034 55.000 6.42 0.00 40.20 3.02
6522 12649 1.410648 CCCAGGTATGCTTGGCTCAAT 60.411 52.381 6.42 0.00 40.20 2.57
6523 12650 2.158623 CCCAGGTATGCTTGGCTCAATA 60.159 50.000 6.42 0.00 40.20 1.90
6524 12651 3.144506 CCAGGTATGCTTGGCTCAATAG 58.855 50.000 0.00 0.00 35.02 1.73
6526 12653 3.562973 CAGGTATGCTTGGCTCAATAGTG 59.437 47.826 0.00 0.00 0.00 2.74
6527 12654 3.200825 AGGTATGCTTGGCTCAATAGTGT 59.799 43.478 0.00 0.00 0.00 3.55
6529 12656 1.167851 TGCTTGGCTCAATAGTGTGC 58.832 50.000 8.62 8.62 42.34 4.57
6530 12657 1.167851 GCTTGGCTCAATAGTGTGCA 58.832 50.000 17.69 3.04 44.37 4.57
6531 12658 1.747355 GCTTGGCTCAATAGTGTGCAT 59.253 47.619 17.69 0.00 44.37 3.96
6532 12659 2.479049 GCTTGGCTCAATAGTGTGCATG 60.479 50.000 17.69 8.68 44.37 4.06
6533 12660 1.097232 TGGCTCAATAGTGTGCATGC 58.903 50.000 17.69 11.82 44.37 4.06
6535 12662 1.679680 GGCTCAATAGTGTGCATGCAT 59.320 47.619 25.64 10.90 44.37 3.96
6536 12663 2.100252 GGCTCAATAGTGTGCATGCATT 59.900 45.455 25.64 10.90 44.37 3.56
6537 12664 3.113322 GCTCAATAGTGTGCATGCATTG 58.887 45.455 25.64 22.31 42.56 2.82
6538 12665 3.702330 CTCAATAGTGTGCATGCATTGG 58.298 45.455 25.64 13.00 0.00 3.16
6541 12668 2.495155 TAGTGTGCATGCATTGGAGT 57.505 45.000 25.64 13.15 0.00 3.85
6543 12670 1.271379 AGTGTGCATGCATTGGAGTTG 59.729 47.619 25.64 0.00 0.00 3.16
6544 12671 0.604073 TGTGCATGCATTGGAGTTGG 59.396 50.000 25.64 0.00 0.00 3.77
6546 12673 1.273048 GTGCATGCATTGGAGTTGGAA 59.727 47.619 25.64 0.00 0.00 3.53
6547 12674 1.546923 TGCATGCATTGGAGTTGGAAG 59.453 47.619 18.46 0.00 0.00 3.46
6549 12676 2.231964 GCATGCATTGGAGTTGGAAGAA 59.768 45.455 14.21 0.00 0.00 2.52
6551 12678 3.228188 TGCATTGGAGTTGGAAGAACT 57.772 42.857 0.00 0.00 0.00 3.01
6552 12679 2.886523 TGCATTGGAGTTGGAAGAACTG 59.113 45.455 0.00 0.00 0.00 3.16
6553 12680 2.887152 GCATTGGAGTTGGAAGAACTGT 59.113 45.455 0.00 0.00 0.00 3.55
6554 12681 3.057946 GCATTGGAGTTGGAAGAACTGTC 60.058 47.826 0.00 0.00 0.00 3.51
6555 12682 4.392940 CATTGGAGTTGGAAGAACTGTCT 58.607 43.478 0.00 0.00 34.72 3.41
6557 12684 5.623956 TTGGAGTTGGAAGAACTGTCTTA 57.376 39.130 0.00 0.00 44.42 2.10
6559 12686 5.611374 TGGAGTTGGAAGAACTGTCTTAAG 58.389 41.667 0.00 0.00 44.42 1.85
6560 12687 4.998033 GGAGTTGGAAGAACTGTCTTAAGG 59.002 45.833 1.85 0.00 44.42 2.69
6561 12688 4.390264 AGTTGGAAGAACTGTCTTAAGGC 58.610 43.478 0.00 0.00 44.42 4.35
6562 12689 4.134563 GTTGGAAGAACTGTCTTAAGGCA 58.865 43.478 9.86 9.86 44.42 4.75
6563 12690 4.640771 TGGAAGAACTGTCTTAAGGCAT 57.359 40.909 10.81 0.00 44.42 4.40
6564 12691 4.326826 TGGAAGAACTGTCTTAAGGCATG 58.673 43.478 10.81 7.53 44.42 4.06
6565 12692 3.691609 GGAAGAACTGTCTTAAGGCATGG 59.308 47.826 10.81 2.29 44.42 3.66
6566 12693 2.716217 AGAACTGTCTTAAGGCATGGC 58.284 47.619 10.81 12.14 0.00 4.40
6567 12694 2.040278 AGAACTGTCTTAAGGCATGGCA 59.960 45.455 22.64 0.00 0.00 4.92
6568 12695 2.814805 ACTGTCTTAAGGCATGGCAT 57.185 45.000 22.64 12.62 0.00 4.40
6569 12696 2.372264 ACTGTCTTAAGGCATGGCATG 58.628 47.619 22.99 22.99 0.00 4.06
6570 12697 1.679680 CTGTCTTAAGGCATGGCATGG 59.320 52.381 27.48 10.83 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 4.465632 TTTAGCTCATGCCTTAACTCGA 57.534 40.909 0.00 0.00 40.80 4.04
137 138 0.874390 TCAAGCCACATTGCTCGAAC 59.126 50.000 0.00 0.00 41.80 3.95
167 168 0.537143 TATGATGAATGCGGTGGGGC 60.537 55.000 0.00 0.00 0.00 5.80
324 332 4.286447 TTGGGCCCAAGACCAAAC 57.714 55.556 34.07 0.00 43.35 2.93
415 427 1.809684 GGAAACCAACCCTCTTCTCG 58.190 55.000 0.00 0.00 0.00 4.04
443 461 7.709149 AAGGAAACTAAGCAAGAGCAAATAT 57.291 32.000 0.00 0.00 42.17 1.28
510 538 5.796424 ACTCCAAGATTGCAACAAGAAAT 57.204 34.783 0.00 0.00 0.00 2.17
517 549 5.915196 GTGAAGTAAACTCCAAGATTGCAAC 59.085 40.000 0.00 0.00 0.00 4.17
763 805 2.201022 CCGCCCGATAGTACTGGCT 61.201 63.158 17.22 0.00 41.80 4.75
812 854 6.126710 TGGGATTACGGGTGATACTATTGTTT 60.127 38.462 0.00 0.00 0.00 2.83
817 859 3.508793 CGTGGGATTACGGGTGATACTAT 59.491 47.826 0.00 0.00 40.22 2.12
818 860 2.886523 CGTGGGATTACGGGTGATACTA 59.113 50.000 0.00 0.00 40.22 1.82
838 880 2.940890 TACCGCCCCTAGTACGACCG 62.941 65.000 0.00 0.00 0.00 4.79
920 966 1.827344 GGGAAAAAGAGATGCCCCTTG 59.173 52.381 0.00 0.00 32.50 3.61
1083 1134 1.129811 GAAAACGAGGCATTACCGGTG 59.870 52.381 19.93 0.65 46.52 4.94
1257 1317 2.353889 CAGATCAAGAACAAGCGGGATG 59.646 50.000 0.00 0.00 0.00 3.51
1269 1329 7.445096 TGCTCAAGTAAAACATTCAGATCAAGA 59.555 33.333 0.00 0.00 0.00 3.02
1385 2987 8.610896 CACCAAAAACATTATTGTGTGTTTCAT 58.389 29.630 4.22 0.00 45.05 2.57
1435 3037 1.462616 TCATTCTTCCAACATGGCCG 58.537 50.000 0.00 0.00 37.47 6.13
1552 3172 9.553064 AGAGAAAAGGAATGTAGCATTATACTG 57.447 33.333 0.00 0.00 0.00 2.74
1593 3213 5.347620 AAGGTATGGCGTAACTATCAACA 57.652 39.130 4.39 0.00 27.63 3.33
1762 3391 6.810676 CCACTAATAGATCTTCATGTGATCCG 59.189 42.308 19.86 11.01 40.69 4.18
1766 3395 7.510343 TCCATCCACTAATAGATCTTCATGTGA 59.490 37.037 0.00 0.00 0.00 3.58
1776 3405 9.211410 CCTTATCAGATCCATCCACTAATAGAT 57.789 37.037 0.00 0.00 0.00 1.98
1790 3419 7.509546 TCCTGTTTTGATACCTTATCAGATCC 58.490 38.462 0.00 0.00 45.15 3.36
1795 3424 6.321181 GGCAATCCTGTTTTGATACCTTATCA 59.679 38.462 0.00 0.00 43.06 2.15
1812 3441 3.737559 TTCATGTAACCAGGCAATCCT 57.262 42.857 0.00 0.00 45.66 3.24
1868 3497 5.705397 ATATAGAGTGGCCACATGCATAT 57.295 39.130 36.39 25.89 43.89 1.78
2062 3707 9.807649 ATTCAATGATTATTCCAAACTGCTTAC 57.192 29.630 0.00 0.00 0.00 2.34
2067 3712 9.655769 CGACTATTCAATGATTATTCCAAACTG 57.344 33.333 0.00 0.00 0.00 3.16
2110 3757 5.885230 TCAACATATGAAGTGCTTTCCAG 57.115 39.130 10.38 0.00 34.30 3.86
2111 3758 6.433716 TGAATCAACATATGAAGTGCTTTCCA 59.566 34.615 10.38 0.00 42.54 3.53
2112 3759 6.855836 TGAATCAACATATGAAGTGCTTTCC 58.144 36.000 10.38 0.00 42.54 3.13
2113 3760 6.471519 GCTGAATCAACATATGAAGTGCTTTC 59.528 38.462 10.38 10.50 42.54 2.62
2114 3761 6.327934 GCTGAATCAACATATGAAGTGCTTT 58.672 36.000 10.38 2.52 42.54 3.51
2115 3762 5.163581 GGCTGAATCAACATATGAAGTGCTT 60.164 40.000 10.38 2.52 42.54 3.91
2116 3763 4.337555 GGCTGAATCAACATATGAAGTGCT 59.662 41.667 10.38 0.00 42.54 4.40
2117 3764 4.498682 GGGCTGAATCAACATATGAAGTGC 60.499 45.833 10.38 2.79 42.54 4.40
2118 3765 4.885907 AGGGCTGAATCAACATATGAAGTG 59.114 41.667 10.38 4.70 42.54 3.16
2119 3766 5.121380 AGGGCTGAATCAACATATGAAGT 57.879 39.130 10.38 0.00 42.54 3.01
2120 3767 4.212847 CGAGGGCTGAATCAACATATGAAG 59.787 45.833 10.38 1.13 42.54 3.02
2121 3768 4.129380 CGAGGGCTGAATCAACATATGAA 58.871 43.478 10.38 0.00 42.54 2.57
2122 3769 3.387699 TCGAGGGCTGAATCAACATATGA 59.612 43.478 10.38 0.00 43.67 2.15
2123 3770 3.732212 TCGAGGGCTGAATCAACATATG 58.268 45.455 0.00 0.00 0.00 1.78
2124 3771 3.389329 ACTCGAGGGCTGAATCAACATAT 59.611 43.478 18.41 0.00 0.00 1.78
2125 3772 2.766263 ACTCGAGGGCTGAATCAACATA 59.234 45.455 18.41 0.00 0.00 2.29
2126 3773 1.556911 ACTCGAGGGCTGAATCAACAT 59.443 47.619 18.41 0.00 0.00 2.71
2127 3774 0.976641 ACTCGAGGGCTGAATCAACA 59.023 50.000 18.41 0.00 0.00 3.33
2128 3775 1.066858 TCACTCGAGGGCTGAATCAAC 60.067 52.381 18.41 0.00 0.00 3.18
2129 3776 1.266178 TCACTCGAGGGCTGAATCAA 58.734 50.000 18.41 0.00 0.00 2.57
2130 3777 1.266178 TTCACTCGAGGGCTGAATCA 58.734 50.000 18.41 0.00 0.00 2.57
2131 3778 2.003301 GTTTCACTCGAGGGCTGAATC 58.997 52.381 18.41 12.40 0.00 2.52
2132 3779 1.625818 AGTTTCACTCGAGGGCTGAAT 59.374 47.619 18.41 1.26 0.00 2.57
2133 3780 1.048601 AGTTTCACTCGAGGGCTGAA 58.951 50.000 18.41 14.55 0.00 3.02
2134 3781 1.048601 AAGTTTCACTCGAGGGCTGA 58.951 50.000 18.41 8.81 0.00 4.26
2135 3782 1.151668 CAAGTTTCACTCGAGGGCTG 58.848 55.000 18.41 6.27 0.00 4.85
2136 3783 1.001406 CTCAAGTTTCACTCGAGGGCT 59.999 52.381 18.41 1.96 0.00 5.19
2137 3784 1.270358 ACTCAAGTTTCACTCGAGGGC 60.270 52.381 18.41 0.00 0.00 5.19
2138 3785 2.408050 CACTCAAGTTTCACTCGAGGG 58.592 52.381 18.41 14.07 0.00 4.30
2139 3786 2.224066 ACCACTCAAGTTTCACTCGAGG 60.224 50.000 18.41 5.96 0.00 4.63
2142 3789 8.755941 CATATAATACCACTCAAGTTTCACTCG 58.244 37.037 0.00 0.00 0.00 4.18
2178 3886 6.991485 ATTAGCATAATACGTTTGCAATGC 57.009 33.333 0.00 4.45 38.84 3.56
2202 3918 9.106977 TGCAATACAATAGGAGGTATATGGTAA 57.893 33.333 0.00 0.00 30.37 2.85
2273 3989 7.083858 CCATAGTGTTACACTGTTTTTGATGG 58.916 38.462 26.18 22.63 45.01 3.51
2381 4098 6.970484 TGTTTTCTTATCACCTTCAGCTTTC 58.030 36.000 0.00 0.00 0.00 2.62
2427 4144 6.153680 TCCTTGTTCTTAGTCATCTTCCTCTC 59.846 42.308 0.00 0.00 0.00 3.20
2581 4307 3.277715 CCCTGCTCTTCTTTCTCATTCC 58.722 50.000 0.00 0.00 0.00 3.01
2611 4337 5.934625 TCTTTCTCAATTTCTCCTTCCTTCG 59.065 40.000 0.00 0.00 0.00 3.79
2675 4401 4.717280 TCCTCTTTACCATTCTCCTTCCTC 59.283 45.833 0.00 0.00 0.00 3.71
2700 4426 4.454678 TCATCCCTTTCCTTCGAATCATG 58.545 43.478 0.00 0.00 0.00 3.07
2778 4504 3.826157 ACCACGTGTTCCATGAATGAATT 59.174 39.130 15.65 0.00 0.00 2.17
2888 4616 6.211184 ACTGCAATGGAAAAGATAACCATCAA 59.789 34.615 0.00 0.00 42.59 2.57
3071 5075 9.014297 ACTTTCATGAAGTAGTTTAGATTTGGG 57.986 33.333 8.41 0.00 46.61 4.12
3142 5148 8.559222 TTTTGCGCAAATATTACATATGTCTG 57.441 30.769 33.94 3.06 0.00 3.51
3192 5198 5.665701 TCCTATAGTCCAATCCCAGCTATT 58.334 41.667 0.00 0.00 0.00 1.73
3257 5264 3.495331 AGTAATGGTTGAACACATGCCA 58.505 40.909 0.00 0.00 0.00 4.92
3306 5313 2.439507 GGAATCCTGCTGGAATGGTCTA 59.560 50.000 17.04 0.00 46.80 2.59
3359 5366 1.208293 CTGCTTGGACCTCTTAGGGAC 59.792 57.143 0.00 0.00 40.58 4.46
3365 5372 4.657814 TTTATTCCTGCTTGGACCTCTT 57.342 40.909 0.00 0.00 46.14 2.85
3512 5681 4.995487 GGTAAGAAAACCGTCACTGAGAAT 59.005 41.667 0.00 0.00 0.00 2.40
3533 5702 1.608717 GAGCCTCACAGGACGATGGT 61.609 60.000 0.00 0.00 37.67 3.55
3666 5841 3.101643 ACCATCTACACTAGTGCCAGA 57.898 47.619 22.90 22.96 32.04 3.86
3712 5928 7.415592 TCATCTTCTGAAGCATCTTCTTCTA 57.584 36.000 12.54 0.00 42.15 2.10
3786 6002 2.923655 ACATGCGACGTTCATAGTCTTG 59.076 45.455 0.00 0.00 36.53 3.02
3832 6048 0.250467 ATCGTCCTGCTGTTGTTGCT 60.250 50.000 0.00 0.00 0.00 3.91
4096 6333 9.453572 AAAGCCATCACATACCAATATATACAG 57.546 33.333 0.00 0.00 0.00 2.74
4155 6392 4.020218 TGCACATAGACAAAGGTTAGCTCT 60.020 41.667 0.00 0.00 0.00 4.09
4338 6575 9.778993 CAACATTTAGCCATCACAATATATAGC 57.221 33.333 0.00 0.00 0.00 2.97
4403 6645 2.686405 CTGCATACAATGGATGTGCACT 59.314 45.455 19.41 3.19 43.77 4.40
4569 6816 5.343307 AATTGATTCATTACCTGCCCAAC 57.657 39.130 0.00 0.00 0.00 3.77
4615 6902 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
4637 7046 8.948401 AGATAGGTCTATGACACAACATCTAT 57.052 34.615 0.00 0.00 33.68 1.98
4656 7065 7.057264 TGTAGGTAGCAGAGCATATAGATAGG 58.943 42.308 0.00 0.00 0.00 2.57
4676 7085 6.902771 AGTATAAGACCACTGCTATGTAGG 57.097 41.667 0.00 0.00 0.00 3.18
4687 7098 9.239551 AGGAACCATTTTAAAGTATAAGACCAC 57.760 33.333 0.00 0.00 0.00 4.16
4844 7261 7.065120 TGTTGAACATTGGGAATTGATTCTT 57.935 32.000 0.00 0.00 37.00 2.52
4956 7418 9.856488 CAAGTTGTTCTAATTAGTACTAGCAGA 57.144 33.333 19.26 4.67 0.00 4.26
5063 7543 1.439679 CTTTCAGTTACTGGACGCCC 58.560 55.000 12.79 0.00 31.51 6.13
5147 7627 3.988379 AACATCGTTGTGCTTCATTGT 57.012 38.095 0.00 0.00 35.83 2.71
5167 7679 7.713073 TCAATTACCATGAAGTACGATGCATAA 59.287 33.333 0.00 0.00 0.00 1.90
5173 7685 8.908786 ATTGATCAATTACCATGAAGTACGAT 57.091 30.769 15.36 0.00 0.00 3.73
5207 7719 9.273016 AGTATTTGAATATGTGTATCGAAAGGG 57.727 33.333 0.00 0.00 0.00 3.95
5237 7828 0.173481 TACGATCAGCCAGTGAGCAC 59.827 55.000 6.40 0.00 42.09 4.40
5264 7855 1.105759 GGGGATGATCTGCAGTTGCC 61.106 60.000 14.67 11.47 41.18 4.52
5311 8064 5.570234 AACGTCATCTTCCTACTCTCTTC 57.430 43.478 0.00 0.00 0.00 2.87
5348 8101 1.966451 CACACCTTCCACGGCTTCC 60.966 63.158 0.00 0.00 0.00 3.46
5425 8178 0.482446 AGGTTGTTCTCCATGGCCAA 59.518 50.000 10.96 4.42 0.00 4.52
5556 8648 4.201910 GCCAATTATCACTTGCATGTACGT 60.202 41.667 4.73 0.00 0.00 3.57
5559 8651 3.636300 GGGCCAATTATCACTTGCATGTA 59.364 43.478 4.39 0.00 0.00 2.29
5577 8671 1.522668 GAGCAAAACATTTTGGGGCC 58.477 50.000 16.66 0.00 45.73 5.80
5594 8688 2.094026 TCCATCATCAACGACACTGGAG 60.094 50.000 0.00 0.00 0.00 3.86
5597 8691 3.236632 TCTCCATCATCAACGACACTG 57.763 47.619 0.00 0.00 0.00 3.66
5719 9040 7.162082 TGGAGAAGAAAGGAAAGTATGAACTC 58.838 38.462 0.00 0.00 33.75 3.01
5790 9111 8.930527 ACCAAATTTTAGGGTTATATAAAGGCC 58.069 33.333 0.00 0.00 0.00 5.19
5847 9176 4.019860 AGAGATCCATCCGATACAAATGGG 60.020 45.833 0.00 0.00 40.34 4.00
5855 9196 6.831353 GGAAGAGATAAGAGATCCATCCGATA 59.169 42.308 0.00 0.00 0.00 2.92
5877 9218 3.941483 GGCTTCGATTCAAATGAGAGGAA 59.059 43.478 0.00 0.00 0.00 3.36
5911 9252 4.844884 TGGATCTCTAGAGTTCAGACGAA 58.155 43.478 25.23 4.19 0.00 3.85
5926 9267 2.827800 TTGCGATCTGGATGGATCTC 57.172 50.000 0.00 0.00 39.73 2.75
5992 9334 6.912591 GTGTTAAATATTCAATTGCGCTAGCT 59.087 34.615 13.93 0.00 45.42 3.32
6009 9351 7.846644 CCATAATGGTGCAAATGTGTTAAAT 57.153 32.000 0.00 0.00 31.35 1.40
6067 9409 5.396484 CAGTACAAAATCAAGATGCACCAG 58.604 41.667 0.00 0.00 0.00 4.00
6128 9470 7.765360 TGAACTAAAACGTTCAGGAAGAAAGTA 59.235 33.333 0.00 0.00 46.10 2.24
6130 9472 7.011828 TGAACTAAAACGTTCAGGAAGAAAG 57.988 36.000 0.00 0.00 45.92 2.62
6131 9473 6.988622 TGAACTAAAACGTTCAGGAAGAAA 57.011 33.333 0.00 0.00 45.92 2.52
6155 12188 4.785301 ACATCCCACAAGTTGATCTATGG 58.215 43.478 10.54 6.17 0.00 2.74
6216 12249 1.959985 TGCCCGCAAAATCAGAAGAAA 59.040 42.857 0.00 0.00 0.00 2.52
6335 12462 4.458989 GTGGTCATCAACTAGCAATCCAAA 59.541 41.667 0.00 0.00 0.00 3.28
6340 12467 4.012374 CCAAGTGGTCATCAACTAGCAAT 58.988 43.478 0.00 0.00 0.00 3.56
6353 12480 1.978617 CACCCATGGCCAAGTGGTC 60.979 63.158 21.46 0.00 41.09 4.02
6354 12481 2.118076 CACCCATGGCCAAGTGGT 59.882 61.111 21.46 18.83 37.57 4.16
6355 12482 1.679977 CTCACCCATGGCCAAGTGG 60.680 63.158 25.25 21.85 38.53 4.00
6356 12483 0.679002 CTCTCACCCATGGCCAAGTG 60.679 60.000 21.82 21.82 0.00 3.16
6359 12486 1.133181 TGACTCTCACCCATGGCCAA 61.133 55.000 10.96 0.00 0.00 4.52
6361 12488 0.393537 CTTGACTCTCACCCATGGCC 60.394 60.000 6.09 0.00 0.00 5.36
6362 12489 1.028868 GCTTGACTCTCACCCATGGC 61.029 60.000 6.09 0.00 0.00 4.40
6364 12491 0.325933 TGGCTTGACTCTCACCCATG 59.674 55.000 0.00 0.00 0.00 3.66
6365 12492 1.211457 GATGGCTTGACTCTCACCCAT 59.789 52.381 4.16 4.16 39.80 4.00
6366 12493 0.615331 GATGGCTTGACTCTCACCCA 59.385 55.000 0.00 0.00 34.04 4.51
6367 12494 0.615331 TGATGGCTTGACTCTCACCC 59.385 55.000 0.00 0.00 0.00 4.61
6368 12495 2.286872 CATGATGGCTTGACTCTCACC 58.713 52.381 0.00 0.00 0.00 4.02
6369 12496 2.676839 CACATGATGGCTTGACTCTCAC 59.323 50.000 0.00 0.00 0.00 3.51
6370 12497 2.303890 ACACATGATGGCTTGACTCTCA 59.696 45.455 0.00 0.00 0.00 3.27
6371 12498 2.676839 CACACATGATGGCTTGACTCTC 59.323 50.000 0.00 0.00 0.00 3.20
6372 12499 2.039480 ACACACATGATGGCTTGACTCT 59.961 45.455 0.00 0.00 0.00 3.24
6375 12502 2.153645 TGACACACATGATGGCTTGAC 58.846 47.619 0.00 0.00 0.00 3.18
6376 12503 2.565046 TGACACACATGATGGCTTGA 57.435 45.000 0.00 0.00 0.00 3.02
6377 12504 2.670229 GCTTGACACACATGATGGCTTG 60.670 50.000 0.00 0.00 0.00 4.01
6378 12505 1.542915 GCTTGACACACATGATGGCTT 59.457 47.619 0.00 0.00 0.00 4.35
6379 12506 1.171308 GCTTGACACACATGATGGCT 58.829 50.000 0.00 0.00 0.00 4.75
6380 12507 0.179181 CGCTTGACACACATGATGGC 60.179 55.000 0.00 0.00 0.00 4.40
6381 12508 0.179181 GCGCTTGACACACATGATGG 60.179 55.000 0.00 0.00 0.00 3.51
6382 12509 0.800631 AGCGCTTGACACACATGATG 59.199 50.000 2.64 0.00 0.00 3.07
6383 12510 1.466167 GAAGCGCTTGACACACATGAT 59.534 47.619 30.47 0.00 0.00 2.45
6385 12512 0.451628 CGAAGCGCTTGACACACATG 60.452 55.000 30.47 1.62 0.00 3.21
6387 12514 3.318875 CGAAGCGCTTGACACACA 58.681 55.556 30.47 0.00 0.00 3.72
6400 12527 0.179215 GCACAATTCCGACTGCGAAG 60.179 55.000 0.00 0.00 40.82 3.79
6401 12528 0.882484 TGCACAATTCCGACTGCGAA 60.882 50.000 0.00 0.00 40.82 4.70
6403 12530 0.453282 CTTGCACAATTCCGACTGCG 60.453 55.000 0.00 0.00 31.96 5.18
6404 12531 0.593128 ACTTGCACAATTCCGACTGC 59.407 50.000 0.00 0.00 0.00 4.40
6405 12532 1.603802 ACACTTGCACAATTCCGACTG 59.396 47.619 0.00 0.00 0.00 3.51
6406 12533 1.967319 ACACTTGCACAATTCCGACT 58.033 45.000 0.00 0.00 0.00 4.18
6407 12534 2.774439 AACACTTGCACAATTCCGAC 57.226 45.000 0.00 0.00 0.00 4.79
6409 12536 2.126467 CCAAACACTTGCACAATTCCG 58.874 47.619 0.00 0.00 0.00 4.30
6410 12537 1.866601 GCCAAACACTTGCACAATTCC 59.133 47.619 0.00 0.00 0.00 3.01
6411 12538 1.866601 GGCCAAACACTTGCACAATTC 59.133 47.619 0.00 0.00 0.00 2.17
6412 12539 1.474855 GGGCCAAACACTTGCACAATT 60.475 47.619 4.39 0.00 0.00 2.32
6413 12540 0.106521 GGGCCAAACACTTGCACAAT 59.893 50.000 4.39 0.00 0.00 2.71
6417 12544 3.222855 CCGGGCCAAACACTTGCA 61.223 61.111 4.39 0.00 0.00 4.08
6418 12545 2.909965 TCCGGGCCAAACACTTGC 60.910 61.111 4.39 0.00 0.00 4.01
6419 12546 0.250553 TACTCCGGGCCAAACACTTG 60.251 55.000 4.39 0.00 0.00 3.16
6420 12547 0.696501 ATACTCCGGGCCAAACACTT 59.303 50.000 4.39 0.00 0.00 3.16
6422 12549 1.201414 CAAATACTCCGGGCCAAACAC 59.799 52.381 4.39 0.00 0.00 3.32
6424 12551 1.743394 CTCAAATACTCCGGGCCAAAC 59.257 52.381 4.39 0.00 0.00 2.93
6425 12552 1.631388 TCTCAAATACTCCGGGCCAAA 59.369 47.619 4.39 0.00 0.00 3.28
6426 12553 1.281419 TCTCAAATACTCCGGGCCAA 58.719 50.000 4.39 0.00 0.00 4.52
6428 12555 1.694696 AGATCTCAAATACTCCGGGCC 59.305 52.381 0.00 0.00 0.00 5.80
6429 12556 2.289133 GGAGATCTCAAATACTCCGGGC 60.289 54.545 23.85 0.00 39.27 6.13
6430 12557 2.300437 GGGAGATCTCAAATACTCCGGG 59.700 54.545 23.85 0.00 46.70 5.73
6432 12559 4.672587 TTGGGAGATCTCAAATACTCCG 57.327 45.455 23.85 0.00 46.70 4.63
6433 12560 7.309770 AGTATTGGGAGATCTCAAATACTCC 57.690 40.000 32.59 22.00 41.72 3.85
6438 12565 7.928706 CGTCTTTAGTATTGGGAGATCTCAAAT 59.071 37.037 23.85 21.85 0.00 2.32
6439 12566 7.265673 CGTCTTTAGTATTGGGAGATCTCAAA 58.734 38.462 23.85 17.04 0.00 2.69
6440 12567 6.683110 GCGTCTTTAGTATTGGGAGATCTCAA 60.683 42.308 23.85 11.82 0.00 3.02
6442 12569 5.010213 AGCGTCTTTAGTATTGGGAGATCTC 59.990 44.000 14.75 14.75 0.00 2.75
6443 12570 4.896482 AGCGTCTTTAGTATTGGGAGATCT 59.104 41.667 0.00 0.00 0.00 2.75
6444 12571 4.985409 CAGCGTCTTTAGTATTGGGAGATC 59.015 45.833 0.00 0.00 0.00 2.75
6445 12572 4.202264 CCAGCGTCTTTAGTATTGGGAGAT 60.202 45.833 0.00 0.00 0.00 2.75
6446 12573 3.132289 CCAGCGTCTTTAGTATTGGGAGA 59.868 47.826 0.00 0.00 0.00 3.71
6447 12574 3.132289 TCCAGCGTCTTTAGTATTGGGAG 59.868 47.826 0.00 0.00 0.00 4.30
6448 12575 3.101437 TCCAGCGTCTTTAGTATTGGGA 58.899 45.455 0.00 0.00 0.00 4.37
6449 12576 3.536956 TCCAGCGTCTTTAGTATTGGG 57.463 47.619 0.00 0.00 0.00 4.12
6450 12577 3.871594 CCTTCCAGCGTCTTTAGTATTGG 59.128 47.826 0.00 0.00 0.00 3.16
6451 12578 3.309954 GCCTTCCAGCGTCTTTAGTATTG 59.690 47.826 0.00 0.00 0.00 1.90
6452 12579 3.197983 AGCCTTCCAGCGTCTTTAGTATT 59.802 43.478 0.00 0.00 38.01 1.89
6453 12580 2.766828 AGCCTTCCAGCGTCTTTAGTAT 59.233 45.455 0.00 0.00 38.01 2.12
6454 12581 2.176889 AGCCTTCCAGCGTCTTTAGTA 58.823 47.619 0.00 0.00 38.01 1.82
6456 12583 2.100605 AAGCCTTCCAGCGTCTTTAG 57.899 50.000 0.00 0.00 38.01 1.85
6457 12584 2.552315 CAAAAGCCTTCCAGCGTCTTTA 59.448 45.455 0.00 0.00 38.01 1.85
6458 12585 1.338020 CAAAAGCCTTCCAGCGTCTTT 59.662 47.619 0.00 0.00 38.01 2.52
6459 12586 0.954452 CAAAAGCCTTCCAGCGTCTT 59.046 50.000 0.00 0.00 38.01 3.01
6460 12587 0.890996 CCAAAAGCCTTCCAGCGTCT 60.891 55.000 0.00 0.00 38.01 4.18
6461 12588 0.889186 TCCAAAAGCCTTCCAGCGTC 60.889 55.000 0.00 0.00 38.01 5.19
6462 12589 0.890996 CTCCAAAAGCCTTCCAGCGT 60.891 55.000 0.00 0.00 38.01 5.07
6464 12591 1.475682 CATCTCCAAAAGCCTTCCAGC 59.524 52.381 0.00 0.00 0.00 4.85
6465 12592 3.077484 TCATCTCCAAAAGCCTTCCAG 57.923 47.619 0.00 0.00 0.00 3.86
6466 12593 3.157087 GTTCATCTCCAAAAGCCTTCCA 58.843 45.455 0.00 0.00 0.00 3.53
6467 12594 3.157087 TGTTCATCTCCAAAAGCCTTCC 58.843 45.455 0.00 0.00 0.00 3.46
6468 12595 4.853924 TTGTTCATCTCCAAAAGCCTTC 57.146 40.909 0.00 0.00 0.00 3.46
6471 12598 3.006217 AGCTTTGTTCATCTCCAAAAGCC 59.994 43.478 13.21 0.00 31.24 4.35
6472 12599 4.233005 GAGCTTTGTTCATCTCCAAAAGC 58.767 43.478 9.76 9.76 30.75 3.51
6473 12600 4.023707 ACGAGCTTTGTTCATCTCCAAAAG 60.024 41.667 0.00 0.00 30.75 2.27
6478 12605 1.734465 CCACGAGCTTTGTTCATCTCC 59.266 52.381 0.00 0.00 0.00 3.71
6480 12607 1.072331 ACCCACGAGCTTTGTTCATCT 59.928 47.619 0.00 0.00 0.00 2.90
6481 12608 1.523758 ACCCACGAGCTTTGTTCATC 58.476 50.000 0.00 0.00 0.00 2.92
6483 12610 1.305201 GAACCCACGAGCTTTGTTCA 58.695 50.000 0.00 0.00 36.28 3.18
6484 12611 0.591659 GGAACCCACGAGCTTTGTTC 59.408 55.000 0.00 0.00 35.68 3.18
6485 12612 2.715536 GGAACCCACGAGCTTTGTT 58.284 52.632 0.00 0.00 0.00 2.83
6486 12613 4.475527 GGAACCCACGAGCTTTGT 57.524 55.556 0.00 0.00 0.00 2.83
6499 12626 0.034089 AGCCAAGCATACCTGGGAAC 60.034 55.000 0.00 0.00 36.68 3.62
6500 12627 0.255890 GAGCCAAGCATACCTGGGAA 59.744 55.000 0.00 0.00 36.68 3.97
6501 12628 0.913934 TGAGCCAAGCATACCTGGGA 60.914 55.000 0.00 0.00 36.68 4.37
6503 12630 2.062971 ATTGAGCCAAGCATACCTGG 57.937 50.000 0.00 0.00 0.00 4.45
6505 12632 3.200825 ACACTATTGAGCCAAGCATACCT 59.799 43.478 0.00 0.00 0.00 3.08
6508 12635 2.945008 GCACACTATTGAGCCAAGCATA 59.055 45.455 0.00 0.00 33.52 3.14
6510 12637 1.167851 GCACACTATTGAGCCAAGCA 58.832 50.000 0.00 0.00 33.52 3.91
6511 12638 1.167851 TGCACACTATTGAGCCAAGC 58.832 50.000 0.30 0.00 38.47 4.01
6512 12639 2.479049 GCATGCACACTATTGAGCCAAG 60.479 50.000 14.21 0.00 38.47 3.61
6513 12640 1.473677 GCATGCACACTATTGAGCCAA 59.526 47.619 14.21 0.00 38.47 4.52
6514 12641 1.097232 GCATGCACACTATTGAGCCA 58.903 50.000 14.21 0.00 38.47 4.75
6515 12642 1.097232 TGCATGCACACTATTGAGCC 58.903 50.000 18.46 0.00 38.47 4.70
6517 12644 3.379057 TCCAATGCATGCACACTATTGAG 59.621 43.478 25.37 15.69 32.05 3.02
6518 12645 3.354467 TCCAATGCATGCACACTATTGA 58.646 40.909 25.37 9.94 32.05 2.57
6519 12646 3.129813 ACTCCAATGCATGCACACTATTG 59.870 43.478 25.37 21.74 0.00 1.90
6520 12647 3.359033 ACTCCAATGCATGCACACTATT 58.641 40.909 25.37 10.40 0.00 1.73
6521 12648 3.008835 ACTCCAATGCATGCACACTAT 57.991 42.857 25.37 3.10 0.00 2.12
6522 12649 2.488937 CAACTCCAATGCATGCACACTA 59.511 45.455 25.37 8.50 0.00 2.74
6523 12650 1.271379 CAACTCCAATGCATGCACACT 59.729 47.619 25.37 7.83 0.00 3.55
6524 12651 1.670674 CCAACTCCAATGCATGCACAC 60.671 52.381 25.37 0.00 0.00 3.82
6526 12653 0.889994 TCCAACTCCAATGCATGCAC 59.110 50.000 25.37 0.00 0.00 4.57
6527 12654 1.546923 CTTCCAACTCCAATGCATGCA 59.453 47.619 25.04 25.04 0.00 3.96
6529 12656 3.508793 AGTTCTTCCAACTCCAATGCATG 59.491 43.478 0.00 0.00 0.00 4.06
6530 12657 3.508793 CAGTTCTTCCAACTCCAATGCAT 59.491 43.478 0.00 0.00 0.00 3.96
6531 12658 2.886523 CAGTTCTTCCAACTCCAATGCA 59.113 45.455 0.00 0.00 0.00 3.96
6532 12659 2.887152 ACAGTTCTTCCAACTCCAATGC 59.113 45.455 0.00 0.00 0.00 3.56
6533 12660 4.392940 AGACAGTTCTTCCAACTCCAATG 58.607 43.478 0.00 0.00 0.00 2.82
6535 12662 4.503714 AAGACAGTTCTTCCAACTCCAA 57.496 40.909 0.00 0.00 37.55 3.53
6536 12663 5.454755 CCTTAAGACAGTTCTTCCAACTCCA 60.455 44.000 3.36 0.00 41.48 3.86
6537 12664 4.998033 CCTTAAGACAGTTCTTCCAACTCC 59.002 45.833 3.36 0.00 41.48 3.85
6538 12665 4.452795 GCCTTAAGACAGTTCTTCCAACTC 59.547 45.833 3.36 0.00 41.48 3.01
6541 12668 4.431416 TGCCTTAAGACAGTTCTTCCAA 57.569 40.909 3.36 0.00 41.48 3.53
6543 12670 3.691609 CCATGCCTTAAGACAGTTCTTCC 59.308 47.826 3.36 0.00 41.48 3.46
6544 12671 3.127721 GCCATGCCTTAAGACAGTTCTTC 59.872 47.826 3.36 0.00 41.48 2.87
6546 12673 2.040278 TGCCATGCCTTAAGACAGTTCT 59.960 45.455 3.36 0.00 0.00 3.01
6547 12674 2.436417 TGCCATGCCTTAAGACAGTTC 58.564 47.619 3.36 0.00 0.00 3.01
6549 12676 2.372264 CATGCCATGCCTTAAGACAGT 58.628 47.619 3.36 0.00 0.00 3.55
6551 12678 1.685803 CCCATGCCATGCCTTAAGACA 60.686 52.381 3.36 0.00 0.00 3.41
6552 12679 1.035139 CCCATGCCATGCCTTAAGAC 58.965 55.000 3.36 0.00 0.00 3.01
6553 12680 3.518766 CCCATGCCATGCCTTAAGA 57.481 52.632 3.36 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.