Multiple sequence alignment - TraesCS5D01G411400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G411400 chr5D 100.000 3002 0 0 1 3002 474815753 474812752 0.000000e+00 5544
1 TraesCS5D01G411400 chr5B 91.855 1817 66 30 572 2364 581830475 581828717 0.000000e+00 2460
2 TraesCS5D01G411400 chr5B 88.770 561 37 11 1 556 581830999 581830460 0.000000e+00 664
3 TraesCS5D01G411400 chr5B 91.162 396 25 6 2609 3002 581828557 581828170 2.050000e-146 529
4 TraesCS5D01G411400 chr5A 91.507 1825 56 37 572 2364 594082361 594080604 0.000000e+00 2420
5 TraesCS5D01G411400 chr5A 91.053 570 24 15 1 556 594082902 594082346 0.000000e+00 745
6 TraesCS5D01G411400 chr5A 90.315 413 17 10 2609 3002 594080442 594080034 1.230000e-143 520
7 TraesCS5D01G411400 chr5A 94.915 118 4 2 2476 2592 505508726 505508842 1.840000e-42 183
8 TraesCS5D01G411400 chr5A 95.536 112 4 1 2479 2589 591434999 591434888 8.550000e-41 178
9 TraesCS5D01G411400 chr5A 95.495 111 3 2 2483 2592 383832129 383832238 3.080000e-40 176
10 TraesCS5D01G411400 chr5A 93.388 121 5 3 2470 2588 596009998 596009879 3.080000e-40 176
11 TraesCS5D01G411400 chrUn 94.915 118 4 2 2482 2597 218481599 218481716 1.840000e-42 183
12 TraesCS5D01G411400 chr6D 94.068 118 5 2 2482 2597 103085341 103085458 8.550000e-41 178
13 TraesCS5D01G411400 chr3B 94.737 114 4 2 2486 2597 602243448 602243335 3.080000e-40 176
14 TraesCS5D01G411400 chr7A 93.277 119 5 3 2483 2599 431899012 431899129 3.980000e-39 172
15 TraesCS5D01G411400 chr3A 93.220 118 7 1 2476 2592 466792339 466792456 3.980000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G411400 chr5D 474812752 474815753 3001 True 5544.000000 5544 100.000000 1 3002 1 chr5D.!!$R1 3001
1 TraesCS5D01G411400 chr5B 581828170 581830999 2829 True 1217.666667 2460 90.595667 1 3002 3 chr5B.!!$R1 3001
2 TraesCS5D01G411400 chr5A 594080034 594082902 2868 True 1228.333333 2420 90.958333 1 3002 3 chr5A.!!$R3 3001

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
728 752 0.108585 ATCACACTCCCACCACACAC 59.891 55.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2453 2524 0.736325 CAAAGGGAGTAGACGTGGCG 60.736 60.0 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.443925 CTCAGAGGCAGGCGACGA 61.444 66.667 0.00 0.00 0.00 4.20
82 83 3.423154 CTTCCAAGCACGTCCGGC 61.423 66.667 0.00 0.00 0.00 6.13
169 171 0.390472 CTGAACCGTCCTCCAGAAGC 60.390 60.000 0.00 0.00 0.00 3.86
288 294 2.712057 GACCCACTGTCATTTTGCAG 57.288 50.000 0.00 0.00 43.85 4.41
291 297 2.233271 CCCACTGTCATTTTGCAGTCT 58.767 47.619 0.00 0.00 43.27 3.24
298 308 3.077359 GTCATTTTGCAGTCTAGTGGCT 58.923 45.455 0.00 0.00 0.00 4.75
300 310 3.008375 TCATTTTGCAGTCTAGTGGCTCT 59.992 43.478 0.00 0.00 0.00 4.09
301 311 4.222810 TCATTTTGCAGTCTAGTGGCTCTA 59.777 41.667 0.00 0.00 0.00 2.43
302 312 4.617253 TTTTGCAGTCTAGTGGCTCTAA 57.383 40.909 0.00 0.00 0.00 2.10
497 517 0.604243 TGGAACGAACCGTCCAATGG 60.604 55.000 0.00 0.00 39.99 3.16
552 572 4.440250 GCTCGAGCAGTAAACTAATCTGGA 60.440 45.833 31.91 0.00 41.59 3.86
553 573 5.651530 CTCGAGCAGTAAACTAATCTGGAA 58.348 41.667 0.00 0.00 0.00 3.53
554 574 6.032956 TCGAGCAGTAAACTAATCTGGAAA 57.967 37.500 0.00 0.00 0.00 3.13
555 575 5.867716 TCGAGCAGTAAACTAATCTGGAAAC 59.132 40.000 0.00 0.00 0.00 2.78
556 576 5.063564 CGAGCAGTAAACTAATCTGGAAACC 59.936 44.000 0.00 0.00 0.00 3.27
557 577 5.254115 AGCAGTAAACTAATCTGGAAACCC 58.746 41.667 0.00 0.00 0.00 4.11
558 578 5.007682 GCAGTAAACTAATCTGGAAACCCA 58.992 41.667 0.00 0.00 0.00 4.51
559 579 5.652452 GCAGTAAACTAATCTGGAAACCCAT 59.348 40.000 0.00 0.00 32.36 4.00
560 580 6.404734 GCAGTAAACTAATCTGGAAACCCATG 60.405 42.308 0.00 0.00 32.36 3.66
561 581 5.652452 AGTAAACTAATCTGGAAACCCATGC 59.348 40.000 0.00 0.00 32.36 4.06
562 582 3.737559 ACTAATCTGGAAACCCATGCA 57.262 42.857 0.00 0.00 32.36 3.96
563 583 4.046286 ACTAATCTGGAAACCCATGCAA 57.954 40.909 0.00 0.00 32.36 4.08
564 584 4.415596 ACTAATCTGGAAACCCATGCAAA 58.584 39.130 0.00 0.00 32.36 3.68
565 585 4.837860 ACTAATCTGGAAACCCATGCAAAA 59.162 37.500 0.00 0.00 32.36 2.44
566 586 4.703379 AATCTGGAAACCCATGCAAAAA 57.297 36.364 0.00 0.00 32.36 1.94
623 643 4.084888 GGGTCGGCTTTGCGTTCG 62.085 66.667 0.00 0.00 0.00 3.95
728 752 0.108585 ATCACACTCCCACCACACAC 59.891 55.000 0.00 0.00 0.00 3.82
729 753 1.223211 CACACTCCCACCACACACA 59.777 57.895 0.00 0.00 0.00 3.72
730 754 1.095228 CACACTCCCACCACACACAC 61.095 60.000 0.00 0.00 0.00 3.82
731 755 1.223211 CACTCCCACCACACACACA 59.777 57.895 0.00 0.00 0.00 3.72
816 858 3.353029 CGTTGCATGCGACCCACA 61.353 61.111 28.44 0.00 0.00 4.17
817 859 2.255252 GTTGCATGCGACCCACAC 59.745 61.111 25.23 0.88 0.00 3.82
819 861 3.781605 TTGCATGCGACCCACACCA 62.782 57.895 14.09 0.00 0.00 4.17
821 863 3.055719 CATGCGACCCACACCACC 61.056 66.667 0.00 0.00 0.00 4.61
822 864 3.249189 ATGCGACCCACACCACCT 61.249 61.111 0.00 0.00 0.00 4.00
823 865 3.254024 ATGCGACCCACACCACCTC 62.254 63.158 0.00 0.00 0.00 3.85
824 866 3.626924 GCGACCCACACCACCTCT 61.627 66.667 0.00 0.00 0.00 3.69
825 867 2.657237 CGACCCACACCACCTCTC 59.343 66.667 0.00 0.00 0.00 3.20
826 868 2.943978 CGACCCACACCACCTCTCC 61.944 68.421 0.00 0.00 0.00 3.71
827 869 1.536662 GACCCACACCACCTCTCCT 60.537 63.158 0.00 0.00 0.00 3.69
828 870 1.536662 ACCCACACCACCTCTCCTC 60.537 63.158 0.00 0.00 0.00 3.71
829 871 2.294078 CCCACACCACCTCTCCTCC 61.294 68.421 0.00 0.00 0.00 4.30
830 872 1.229336 CCACACCACCTCTCCTCCT 60.229 63.158 0.00 0.00 0.00 3.69
831 873 1.261238 CCACACCACCTCTCCTCCTC 61.261 65.000 0.00 0.00 0.00 3.71
832 874 1.079438 ACACCACCTCTCCTCCTCC 59.921 63.158 0.00 0.00 0.00 4.30
833 875 1.390125 CACCACCTCTCCTCCTCCT 59.610 63.158 0.00 0.00 0.00 3.69
834 876 0.686112 CACCACCTCTCCTCCTCCTC 60.686 65.000 0.00 0.00 0.00 3.71
835 877 1.075600 CCACCTCTCCTCCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
836 878 1.075600 CACCTCTCCTCCTCCTCCC 60.076 68.421 0.00 0.00 0.00 4.30
863 905 1.447838 CCACCACATCGAGAACCCG 60.448 63.158 0.00 0.00 0.00 5.28
880 922 1.301716 CGAGTGACCCACAACCCAG 60.302 63.158 0.00 0.00 36.74 4.45
918 960 1.065926 CCGGTTCCTAACTAACCACCC 60.066 57.143 0.00 0.00 45.59 4.61
920 962 2.272698 GGTTCCTAACTAACCACCCCT 58.727 52.381 0.00 0.00 44.83 4.79
921 963 2.026542 GGTTCCTAACTAACCACCCCTG 60.027 54.545 0.00 0.00 44.83 4.45
922 964 1.282382 TCCTAACTAACCACCCCTGC 58.718 55.000 0.00 0.00 0.00 4.85
923 965 0.255033 CCTAACTAACCACCCCTGCC 59.745 60.000 0.00 0.00 0.00 4.85
924 966 0.988832 CTAACTAACCACCCCTGCCA 59.011 55.000 0.00 0.00 0.00 4.92
925 967 0.694196 TAACTAACCACCCCTGCCAC 59.306 55.000 0.00 0.00 0.00 5.01
926 968 2.076597 AACTAACCACCCCTGCCACC 62.077 60.000 0.00 0.00 0.00 4.61
1776 1834 2.564975 CACTACGACGGAGGCGTT 59.435 61.111 12.67 0.00 42.62 4.84
1947 2008 1.115467 AGATGATGTGGGAGGACGAC 58.885 55.000 0.00 0.00 0.00 4.34
2005 2066 1.447489 CTTCTCACCGCCTGAGCAG 60.447 63.158 3.94 0.00 45.64 4.24
2008 2069 3.602513 CTCACCGCCTGAGCAGCTT 62.603 63.158 0.00 0.00 40.23 3.74
2034 2095 0.322277 GCTGCATGGATCCCATCGAT 60.322 55.000 9.90 0.00 43.15 3.59
2035 2096 1.450025 CTGCATGGATCCCATCGATG 58.550 55.000 18.76 18.76 43.15 3.84
2036 2097 1.002773 CTGCATGGATCCCATCGATGA 59.997 52.381 26.86 8.19 45.02 2.92
2037 2098 1.631898 TGCATGGATCCCATCGATGAT 59.368 47.619 26.86 13.04 45.02 2.45
2136 2201 5.126396 TGTACAGATTGAGTGAGTGAGTG 57.874 43.478 0.00 0.00 0.00 3.51
2146 2211 8.753497 ATTGAGTGAGTGAGTGATACTACATA 57.247 34.615 0.00 0.00 0.00 2.29
2147 2212 7.555306 TGAGTGAGTGAGTGATACTACATAC 57.445 40.000 0.00 0.00 0.00 2.39
2148 2213 7.110155 TGAGTGAGTGAGTGATACTACATACA 58.890 38.462 0.00 0.00 0.00 2.29
2149 2214 7.775561 TGAGTGAGTGAGTGATACTACATACAT 59.224 37.037 0.00 0.00 0.00 2.29
2166 2231 5.183331 ACATACATACATACTCCAGTAGCCG 59.817 44.000 0.00 0.00 33.52 5.52
2186 2251 6.648192 AGCCGTATACGTAGAAGATATAGGT 58.352 40.000 22.87 6.58 37.74 3.08
2187 2252 6.760770 AGCCGTATACGTAGAAGATATAGGTC 59.239 42.308 22.87 1.43 37.74 3.85
2188 2253 6.018343 GCCGTATACGTAGAAGATATAGGTCC 60.018 46.154 22.87 0.00 37.74 4.46
2240 2305 3.056465 AGGAGTACTTGCTTCCTCTTTCG 60.056 47.826 0.00 0.00 0.00 3.46
2242 2307 2.633481 AGTACTTGCTTCCTCTTTCGGT 59.367 45.455 0.00 0.00 0.00 4.69
2272 2340 4.850347 AGGCGTCAGTATATTGTAGTCC 57.150 45.455 0.00 0.00 0.00 3.85
2329 2397 3.253955 GGCAGTGCCGTGTAACAG 58.746 61.111 20.55 0.00 39.62 3.16
2337 2406 2.546368 GTGCCGTGTAACAGAAACATGA 59.454 45.455 0.00 0.00 36.20 3.07
2341 2410 4.722194 CCGTGTAACAGAAACATGAATGG 58.278 43.478 0.00 0.00 36.20 3.16
2349 2418 6.669125 ACAGAAACATGAATGGAATTGGAA 57.331 33.333 0.00 0.00 36.07 3.53
2405 2474 8.729805 ATTTGAGGAAATTTTGCAGTTGTTTA 57.270 26.923 3.39 0.00 0.00 2.01
2406 2475 8.729805 TTTGAGGAAATTTTGCAGTTGTTTAT 57.270 26.923 3.39 0.00 0.00 1.40
2407 2476 7.945033 TGAGGAAATTTTGCAGTTGTTTATC 57.055 32.000 3.39 0.00 0.00 1.75
2408 2477 7.725251 TGAGGAAATTTTGCAGTTGTTTATCT 58.275 30.769 3.39 0.00 0.00 1.98
2410 2479 9.860898 GAGGAAATTTTGCAGTTGTTTATCTAT 57.139 29.630 3.39 0.00 0.00 1.98
2434 2505 1.519408 TTCGGTAGCTTGCTGAAACC 58.481 50.000 5.26 4.32 0.00 3.27
2446 2517 5.775686 CTTGCTGAAACCTCAAATGATTGA 58.224 37.500 0.00 0.00 43.18 2.57
2453 2524 8.055279 TGAAACCTCAAATGATTGATAGTTCC 57.945 34.615 7.26 0.00 44.29 3.62
2454 2525 6.683974 AACCTCAAATGATTGATAGTTCCG 57.316 37.500 0.00 0.00 44.29 4.30
2461 2532 1.859080 GATTGATAGTTCCGCCACGTC 59.141 52.381 0.00 0.00 0.00 4.34
2464 2535 1.402968 TGATAGTTCCGCCACGTCTAC 59.597 52.381 0.00 0.00 0.00 2.59
2479 2550 2.159282 CGTCTACTCCCTTTGCGTACAT 60.159 50.000 0.00 0.00 0.00 2.29
2484 2555 3.332034 ACTCCCTTTGCGTACATTGTAC 58.668 45.455 15.57 15.57 0.00 2.90
2485 2556 3.007614 ACTCCCTTTGCGTACATTGTACT 59.992 43.478 21.35 0.00 0.00 2.73
2486 2557 4.000988 CTCCCTTTGCGTACATTGTACTT 58.999 43.478 21.35 0.00 0.00 2.24
2487 2558 3.998341 TCCCTTTGCGTACATTGTACTTC 59.002 43.478 21.35 14.38 0.00 3.01
2488 2559 3.126343 CCCTTTGCGTACATTGTACTTCC 59.874 47.826 21.35 11.85 0.00 3.46
2489 2560 4.000988 CCTTTGCGTACATTGTACTTCCT 58.999 43.478 21.35 0.00 0.00 3.36
2490 2561 4.092968 CCTTTGCGTACATTGTACTTCCTC 59.907 45.833 21.35 8.49 0.00 3.71
2491 2562 3.241067 TGCGTACATTGTACTTCCTCC 57.759 47.619 21.35 6.55 0.00 4.30
2492 2563 2.190981 GCGTACATTGTACTTCCTCCG 58.809 52.381 21.35 9.99 0.00 4.63
2493 2564 2.416431 GCGTACATTGTACTTCCTCCGT 60.416 50.000 21.35 0.00 0.00 4.69
2494 2565 3.841643 CGTACATTGTACTTCCTCCGTT 58.158 45.455 21.35 0.00 0.00 4.44
2495 2566 3.855950 CGTACATTGTACTTCCTCCGTTC 59.144 47.826 21.35 0.00 0.00 3.95
2496 2567 3.329929 ACATTGTACTTCCTCCGTTCC 57.670 47.619 0.00 0.00 0.00 3.62
2497 2568 2.268298 CATTGTACTTCCTCCGTTCCG 58.732 52.381 0.00 0.00 0.00 4.30
2498 2569 1.619654 TTGTACTTCCTCCGTTCCGA 58.380 50.000 0.00 0.00 0.00 4.55
2499 2570 1.619654 TGTACTTCCTCCGTTCCGAA 58.380 50.000 0.00 0.00 0.00 4.30
2500 2571 2.173519 TGTACTTCCTCCGTTCCGAAT 58.826 47.619 0.00 0.00 0.00 3.34
2501 2572 2.564062 TGTACTTCCTCCGTTCCGAATT 59.436 45.455 0.00 0.00 0.00 2.17
2502 2573 3.763360 TGTACTTCCTCCGTTCCGAATTA 59.237 43.478 0.00 0.00 0.00 1.40
2503 2574 3.242549 ACTTCCTCCGTTCCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
2504 2575 2.830321 ACTTCCTCCGTTCCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
2505 2576 3.119209 ACTTCCTCCGTTCCGAATTACTC 60.119 47.826 0.00 0.00 0.00 2.59
2507 2578 1.133790 CCTCCGTTCCGAATTACTCGT 59.866 52.381 0.00 0.00 46.65 4.18
2508 2579 2.448219 CTCCGTTCCGAATTACTCGTC 58.552 52.381 0.00 0.00 46.65 4.20
2509 2580 1.186030 CCGTTCCGAATTACTCGTCG 58.814 55.000 0.00 0.00 46.65 5.12
2510 2581 0.564767 CGTTCCGAATTACTCGTCGC 59.435 55.000 0.00 0.00 46.65 5.19
2511 2582 1.621107 GTTCCGAATTACTCGTCGCA 58.379 50.000 0.00 0.00 46.65 5.10
2512 2583 1.582502 GTTCCGAATTACTCGTCGCAG 59.417 52.381 0.00 0.00 46.65 5.18
2513 2584 1.089112 TCCGAATTACTCGTCGCAGA 58.911 50.000 0.00 0.00 46.65 4.26
2514 2585 1.469703 TCCGAATTACTCGTCGCAGAA 59.530 47.619 0.00 0.00 46.65 3.02
2515 2586 2.095110 TCCGAATTACTCGTCGCAGAAA 60.095 45.455 0.00 0.00 46.65 2.52
2516 2587 2.858344 CCGAATTACTCGTCGCAGAAAT 59.142 45.455 0.00 0.00 46.65 2.17
2517 2588 3.301835 CCGAATTACTCGTCGCAGAAATG 60.302 47.826 0.00 0.00 46.65 2.32
2518 2589 3.301835 CGAATTACTCGTCGCAGAAATGG 60.302 47.826 0.00 0.00 42.89 3.16
2519 2590 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
2520 2591 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
2521 2592 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
2522 2593 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
2523 2594 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
2524 2595 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
2525 2596 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
2526 2597 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
2527 2598 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
2528 2599 4.982295 CGTCGCAGAAATGGATGTATCTAA 59.018 41.667 0.00 0.00 39.69 2.10
2529 2600 5.635280 CGTCGCAGAAATGGATGTATCTAAT 59.365 40.000 0.00 0.00 39.69 1.73
2530 2601 6.400409 CGTCGCAGAAATGGATGTATCTAATG 60.400 42.308 0.00 0.00 39.69 1.90
2531 2602 6.425114 GTCGCAGAAATGGATGTATCTAATGT 59.575 38.462 0.00 0.00 39.69 2.71
2532 2603 7.598869 GTCGCAGAAATGGATGTATCTAATGTA 59.401 37.037 0.00 0.00 39.69 2.29
2533 2604 8.314021 TCGCAGAAATGGATGTATCTAATGTAT 58.686 33.333 0.00 0.00 0.00 2.29
2534 2605 8.939929 CGCAGAAATGGATGTATCTAATGTATT 58.060 33.333 0.00 0.00 0.00 1.89
2562 2633 8.693120 AGTTCTAGATACATCCATTTCTACGA 57.307 34.615 0.00 0.00 0.00 3.43
2563 2634 8.569641 AGTTCTAGATACATCCATTTCTACGAC 58.430 37.037 0.00 0.00 0.00 4.34
2564 2635 7.130303 TCTAGATACATCCATTTCTACGACG 57.870 40.000 0.00 0.00 0.00 5.12
2565 2636 6.932960 TCTAGATACATCCATTTCTACGACGA 59.067 38.462 0.00 0.00 0.00 4.20
2566 2637 6.003234 AGATACATCCATTTCTACGACGAG 57.997 41.667 0.00 0.00 0.00 4.18
2567 2638 5.531659 AGATACATCCATTTCTACGACGAGT 59.468 40.000 0.00 0.00 0.00 4.18
2568 2639 6.709397 AGATACATCCATTTCTACGACGAGTA 59.291 38.462 0.00 0.00 0.00 2.59
2569 2640 5.571784 ACATCCATTTCTACGACGAGTAA 57.428 39.130 0.00 0.00 34.45 2.24
2570 2641 6.145338 ACATCCATTTCTACGACGAGTAAT 57.855 37.500 0.00 0.00 34.45 1.89
2571 2642 6.570692 ACATCCATTTCTACGACGAGTAATT 58.429 36.000 0.00 0.00 34.45 1.40
2572 2643 7.039882 ACATCCATTTCTACGACGAGTAATTT 58.960 34.615 0.00 0.00 34.45 1.82
2573 2644 6.880822 TCCATTTCTACGACGAGTAATTTG 57.119 37.500 0.00 0.00 34.45 2.32
2574 2645 6.623486 TCCATTTCTACGACGAGTAATTTGA 58.377 36.000 0.00 0.00 34.45 2.69
2575 2646 7.092079 TCCATTTCTACGACGAGTAATTTGAA 58.908 34.615 0.00 0.00 34.45 2.69
2576 2647 7.599621 TCCATTTCTACGACGAGTAATTTGAAA 59.400 33.333 0.00 0.00 33.36 2.69
2577 2648 7.686938 CCATTTCTACGACGAGTAATTTGAAAC 59.313 37.037 0.00 0.00 32.37 2.78
2578 2649 5.980324 TCTACGACGAGTAATTTGAAACG 57.020 39.130 0.00 0.00 34.45 3.60
2579 2650 4.853196 TCTACGACGAGTAATTTGAAACGG 59.147 41.667 0.00 0.00 34.45 4.44
2580 2651 3.641648 ACGACGAGTAATTTGAAACGGA 58.358 40.909 0.00 0.00 0.00 4.69
2581 2652 3.671928 ACGACGAGTAATTTGAAACGGAG 59.328 43.478 0.00 0.00 0.00 4.63
2582 2653 3.060363 CGACGAGTAATTTGAAACGGAGG 59.940 47.826 0.00 0.00 0.00 4.30
2583 2654 3.332034 ACGAGTAATTTGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
2584 2655 3.007182 ACGAGTAATTTGAAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
2585 2656 3.617263 CGAGTAATTTGAAACGGAGGGAG 59.383 47.826 0.00 0.00 0.00 4.30
2595 2666 3.949842 AACGGAGGGAGTAACTTGTAC 57.050 47.619 0.00 0.00 0.00 2.90
2601 2672 1.823610 GGGAGTAACTTGTACTCGCCT 59.176 52.381 15.84 0.00 45.80 5.52
2603 2674 2.159268 GGAGTAACTTGTACTCGCCTCC 60.159 54.545 7.28 0.00 43.53 4.30
2604 2675 1.471684 AGTAACTTGTACTCGCCTCCG 59.528 52.381 0.00 0.00 0.00 4.63
2619 2728 2.416162 GCCTCCGAGAAACTCTACTGTG 60.416 54.545 0.00 0.00 0.00 3.66
2637 2746 4.462483 ACTGTGACTTGCAAGAAGGAAAAA 59.538 37.500 32.50 8.51 0.00 1.94
2718 2836 3.172919 GCAGAAGCGGAGAAGTGC 58.827 61.111 0.00 0.00 0.00 4.40
2742 2860 4.907034 CCTCGCACGGACCGATCG 62.907 72.222 23.38 21.58 33.83 3.69
2791 2910 3.070060 GTCCGCGTGACGTGATTC 58.930 61.111 21.13 6.01 39.94 2.52
2887 3010 1.810532 CTAGCAGGAGACCACGACC 59.189 63.158 0.00 0.00 0.00 4.79
2951 3074 4.505217 CGGTTCGCAGCATCGTGC 62.505 66.667 0.00 2.28 45.46 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.123936 GTCTCGGGGTCAATTAAAATAGCT 58.876 41.667 0.00 0.00 0.00 3.32
82 83 3.345808 CAGACCACGCAACCGGTG 61.346 66.667 8.52 3.35 39.22 4.94
169 171 2.811317 GGTCTTCGCCTCGTGCTG 60.811 66.667 0.00 0.00 38.05 4.41
287 293 7.661536 TGATTGTTATTAGAGCCACTAGACT 57.338 36.000 0.00 0.00 32.30 3.24
288 294 8.604890 GTTTGATTGTTATTAGAGCCACTAGAC 58.395 37.037 0.00 0.00 32.30 2.59
291 297 6.537301 CGGTTTGATTGTTATTAGAGCCACTA 59.463 38.462 0.00 0.00 0.00 2.74
298 308 6.469410 ACCTCACGGTTTGATTGTTATTAGA 58.531 36.000 0.00 0.00 42.13 2.10
300 310 6.231951 TGACCTCACGGTTTGATTGTTATTA 58.768 36.000 0.00 0.00 45.73 0.98
301 311 5.067273 TGACCTCACGGTTTGATTGTTATT 58.933 37.500 0.00 0.00 45.73 1.40
302 312 4.647611 TGACCTCACGGTTTGATTGTTAT 58.352 39.130 0.00 0.00 45.73 1.89
412 430 6.697019 CGTGACATGTCCATCTTTTTCTTTTT 59.303 34.615 22.85 0.00 0.00 1.94
414 432 5.299279 ACGTGACATGTCCATCTTTTTCTTT 59.701 36.000 22.85 0.00 0.00 2.52
415 433 4.821805 ACGTGACATGTCCATCTTTTTCTT 59.178 37.500 22.85 0.00 0.00 2.52
416 434 4.389374 ACGTGACATGTCCATCTTTTTCT 58.611 39.130 22.85 0.00 0.00 2.52
417 435 4.749245 ACGTGACATGTCCATCTTTTTC 57.251 40.909 22.85 0.00 0.00 2.29
449 467 6.653273 TTTCGACGCTATATATACGTAGCT 57.347 37.500 15.56 0.00 40.82 3.32
450 468 9.591404 AATATTTCGACGCTATATATACGTAGC 57.409 33.333 15.56 7.47 40.69 3.58
497 517 1.066430 TGCGTATTTGACCCTCACTCC 60.066 52.381 0.00 0.00 0.00 3.85
569 589 3.566742 ACGCCGTTTCCAGATTAGTTTTT 59.433 39.130 0.00 0.00 0.00 1.94
570 590 3.143728 ACGCCGTTTCCAGATTAGTTTT 58.856 40.909 0.00 0.00 0.00 2.43
571 591 2.774687 ACGCCGTTTCCAGATTAGTTT 58.225 42.857 0.00 0.00 0.00 2.66
572 592 2.467566 ACGCCGTTTCCAGATTAGTT 57.532 45.000 0.00 0.00 0.00 2.24
573 593 2.467566 AACGCCGTTTCCAGATTAGT 57.532 45.000 0.00 0.00 0.00 2.24
574 594 2.284417 GCTAACGCCGTTTCCAGATTAG 59.716 50.000 8.19 0.00 0.00 1.73
575 595 2.273557 GCTAACGCCGTTTCCAGATTA 58.726 47.619 8.19 0.00 0.00 1.75
576 596 1.084289 GCTAACGCCGTTTCCAGATT 58.916 50.000 8.19 0.00 0.00 2.40
577 597 1.082117 CGCTAACGCCGTTTCCAGAT 61.082 55.000 8.19 0.00 0.00 2.90
578 598 1.735198 CGCTAACGCCGTTTCCAGA 60.735 57.895 8.19 0.00 0.00 3.86
579 599 2.736682 CCGCTAACGCCGTTTCCAG 61.737 63.158 8.19 0.05 38.22 3.86
580 600 2.739287 CCGCTAACGCCGTTTCCA 60.739 61.111 8.19 0.00 38.22 3.53
581 601 3.493440 CCCGCTAACGCCGTTTCC 61.493 66.667 8.19 0.00 38.22 3.13
582 602 4.156622 GCCCGCTAACGCCGTTTC 62.157 66.667 8.19 0.00 38.22 2.78
728 752 1.738099 GCTAGTGAGCGGGTGTGTG 60.738 63.158 0.00 0.00 39.39 3.82
729 753 2.657237 GCTAGTGAGCGGGTGTGT 59.343 61.111 0.00 0.00 39.39 3.72
816 858 1.700985 GAGGAGGAGGAGAGGTGGT 59.299 63.158 0.00 0.00 0.00 4.16
817 859 1.075600 GGAGGAGGAGGAGAGGTGG 60.076 68.421 0.00 0.00 0.00 4.61
819 861 1.230819 AGGGAGGAGGAGGAGAGGT 60.231 63.158 0.00 0.00 0.00 3.85
821 863 1.292941 TGGAGGGAGGAGGAGGAGAG 61.293 65.000 0.00 0.00 0.00 3.20
822 864 1.230650 TGGAGGGAGGAGGAGGAGA 60.231 63.158 0.00 0.00 0.00 3.71
823 865 1.075600 GTGGAGGGAGGAGGAGGAG 60.076 68.421 0.00 0.00 0.00 3.69
824 866 2.637640 GGTGGAGGGAGGAGGAGGA 61.638 68.421 0.00 0.00 0.00 3.71
825 867 2.041405 GGTGGAGGGAGGAGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
826 868 1.687493 GTGGTGGAGGGAGGAGGAG 60.687 68.421 0.00 0.00 0.00 3.69
827 869 2.450243 GTGGTGGAGGGAGGAGGA 59.550 66.667 0.00 0.00 0.00 3.71
828 870 2.689034 GGTGGTGGAGGGAGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
829 871 2.689034 GGGTGGTGGAGGGAGGAG 60.689 72.222 0.00 0.00 0.00 3.69
830 872 3.537506 TGGGTGGTGGAGGGAGGA 61.538 66.667 0.00 0.00 0.00 3.71
831 873 3.330720 GTGGGTGGTGGAGGGAGG 61.331 72.222 0.00 0.00 0.00 4.30
832 874 3.330720 GGTGGGTGGTGGAGGGAG 61.331 72.222 0.00 0.00 0.00 4.30
833 875 4.194497 TGGTGGGTGGTGGAGGGA 62.194 66.667 0.00 0.00 0.00 4.20
834 876 3.966543 GTGGTGGGTGGTGGAGGG 61.967 72.222 0.00 0.00 0.00 4.30
835 877 2.484287 GATGTGGTGGGTGGTGGAGG 62.484 65.000 0.00 0.00 0.00 4.30
836 878 1.002134 GATGTGGTGGGTGGTGGAG 60.002 63.158 0.00 0.00 0.00 3.86
863 905 1.600916 GCTGGGTTGTGGGTCACTC 60.601 63.158 0.00 0.00 35.11 3.51
1671 1729 3.041940 CTGTTGGTCGTGCCGTCC 61.042 66.667 4.44 4.44 41.21 4.79
1821 1882 2.037367 CTCCCCACCTCGGACTCA 59.963 66.667 0.00 0.00 36.56 3.41
1947 2008 4.154347 GGGCTCTGCACCTCCTCG 62.154 72.222 0.00 0.00 0.00 4.63
2005 2066 2.490217 CATGCAGCTGGAGCAAGC 59.510 61.111 17.12 5.36 46.27 4.01
2012 2073 0.894184 GATGGGATCCATGCAGCTGG 60.894 60.000 17.12 0.00 45.26 4.85
2014 2075 1.072678 CGATGGGATCCATGCAGCT 59.927 57.895 15.23 0.00 45.26 4.24
2035 2096 5.221621 TGGACCAAAAACTTTGGATGGAATC 60.222 40.000 21.92 9.56 44.55 2.52
2036 2097 4.657969 TGGACCAAAAACTTTGGATGGAAT 59.342 37.500 21.92 1.42 42.06 3.01
2037 2098 4.033709 TGGACCAAAAACTTTGGATGGAA 58.966 39.130 21.92 3.37 42.06 3.53
2146 2211 3.563223 ACGGCTACTGGAGTATGTATGT 58.437 45.455 0.00 0.00 0.00 2.29
2147 2212 5.899120 ATACGGCTACTGGAGTATGTATG 57.101 43.478 0.00 0.00 29.81 2.39
2148 2213 5.583854 CGTATACGGCTACTGGAGTATGTAT 59.416 44.000 17.61 6.23 32.76 2.29
2149 2214 4.931601 CGTATACGGCTACTGGAGTATGTA 59.068 45.833 17.61 0.00 35.37 2.29
2186 2251 4.597507 ACAAGGAACCAACAAGATCTAGGA 59.402 41.667 0.00 0.00 0.00 2.94
2187 2252 4.911390 ACAAGGAACCAACAAGATCTAGG 58.089 43.478 0.00 0.00 0.00 3.02
2188 2253 6.090898 CGTTACAAGGAACCAACAAGATCTAG 59.909 42.308 0.00 0.00 0.00 2.43
2240 2305 0.865769 CTGACGCCTACACAACAACC 59.134 55.000 0.00 0.00 0.00 3.77
2242 2307 3.671008 ATACTGACGCCTACACAACAA 57.329 42.857 0.00 0.00 0.00 2.83
2272 2340 8.624776 TCTCTGTATGAGTATGTATGAACTGTG 58.375 37.037 0.00 0.00 43.13 3.66
2370 2439 9.651913 GCAAAATTTCCTCAAATAATAAGTCCA 57.348 29.630 0.00 0.00 31.51 4.02
2371 2440 9.651913 TGCAAAATTTCCTCAAATAATAAGTCC 57.348 29.630 0.00 0.00 31.51 3.85
2376 2445 9.995003 ACAACTGCAAAATTTCCTCAAATAATA 57.005 25.926 0.00 0.00 31.51 0.98
2377 2446 8.907222 ACAACTGCAAAATTTCCTCAAATAAT 57.093 26.923 0.00 0.00 31.51 1.28
2378 2447 8.729805 AACAACTGCAAAATTTCCTCAAATAA 57.270 26.923 0.00 0.00 31.51 1.40
2379 2448 8.729805 AAACAACTGCAAAATTTCCTCAAATA 57.270 26.923 0.00 0.00 31.51 1.40
2380 2449 7.628769 AAACAACTGCAAAATTTCCTCAAAT 57.371 28.000 0.00 0.00 33.27 2.32
2381 2450 8.729805 ATAAACAACTGCAAAATTTCCTCAAA 57.270 26.923 0.00 0.00 0.00 2.69
2382 2451 8.203485 AGATAAACAACTGCAAAATTTCCTCAA 58.797 29.630 0.00 0.00 0.00 3.02
2383 2452 7.725251 AGATAAACAACTGCAAAATTTCCTCA 58.275 30.769 0.00 0.00 0.00 3.86
2384 2453 9.860898 ATAGATAAACAACTGCAAAATTTCCTC 57.139 29.630 0.00 0.00 0.00 3.71
2405 2474 8.067751 TCAGCAAGCTACCGAATAATATAGAT 57.932 34.615 0.00 0.00 0.00 1.98
2406 2475 7.462571 TCAGCAAGCTACCGAATAATATAGA 57.537 36.000 0.00 0.00 0.00 1.98
2407 2476 8.436200 GTTTCAGCAAGCTACCGAATAATATAG 58.564 37.037 0.00 0.00 0.00 1.31
2408 2477 7.386848 GGTTTCAGCAAGCTACCGAATAATATA 59.613 37.037 0.00 0.00 0.00 0.86
2410 2479 5.526111 GGTTTCAGCAAGCTACCGAATAATA 59.474 40.000 0.00 0.00 0.00 0.98
2411 2480 4.335594 GGTTTCAGCAAGCTACCGAATAAT 59.664 41.667 0.00 0.00 0.00 1.28
2421 2492 3.225104 TCATTTGAGGTTTCAGCAAGCT 58.775 40.909 0.00 0.00 46.34 3.74
2425 2496 5.988310 ATCAATCATTTGAGGTTTCAGCA 57.012 34.783 0.00 0.00 44.75 4.41
2427 2498 8.186821 GGAACTATCAATCATTTGAGGTTTCAG 58.813 37.037 9.53 0.00 44.75 3.02
2434 2505 4.576053 TGGCGGAACTATCAATCATTTGAG 59.424 41.667 0.00 0.00 44.75 3.02
2446 2517 1.674962 GAGTAGACGTGGCGGAACTAT 59.325 52.381 0.00 0.00 0.00 2.12
2453 2524 0.736325 CAAAGGGAGTAGACGTGGCG 60.736 60.000 0.00 0.00 0.00 5.69
2454 2525 1.019805 GCAAAGGGAGTAGACGTGGC 61.020 60.000 0.00 0.00 0.00 5.01
2461 2532 3.596214 ACAATGTACGCAAAGGGAGTAG 58.404 45.455 0.00 0.00 32.14 2.57
2464 2535 3.596214 AGTACAATGTACGCAAAGGGAG 58.404 45.455 16.75 0.00 0.00 4.30
2497 2568 3.863424 TCCATTTCTGCGACGAGTAATTC 59.137 43.478 0.00 0.00 0.00 2.17
2498 2569 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
2499 2570 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
2500 2571 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
2501 2572 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
2502 2573 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
2503 2574 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
2504 2575 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
2505 2576 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
2506 2577 6.425114 ACATTAGATACATCCATTTCTGCGAC 59.575 38.462 0.00 0.00 0.00 5.19
2507 2578 6.524734 ACATTAGATACATCCATTTCTGCGA 58.475 36.000 0.00 0.00 0.00 5.10
2508 2579 6.791887 ACATTAGATACATCCATTTCTGCG 57.208 37.500 0.00 0.00 0.00 5.18
2536 2607 9.788889 TCGTAGAAATGGATGTATCTAGAACTA 57.211 33.333 0.00 0.00 0.00 2.24
2537 2608 8.569641 GTCGTAGAAATGGATGTATCTAGAACT 58.430 37.037 0.00 0.00 39.69 3.01
2538 2609 7.534578 CGTCGTAGAAATGGATGTATCTAGAAC 59.465 40.741 0.00 0.00 39.69 3.01
2539 2610 7.443272 TCGTCGTAGAAATGGATGTATCTAGAA 59.557 37.037 0.00 0.00 39.69 2.10
2540 2611 6.932960 TCGTCGTAGAAATGGATGTATCTAGA 59.067 38.462 0.00 0.00 39.69 2.43
2541 2612 7.095144 ACTCGTCGTAGAAATGGATGTATCTAG 60.095 40.741 0.00 0.00 39.69 2.43
2542 2613 6.709397 ACTCGTCGTAGAAATGGATGTATCTA 59.291 38.462 0.00 0.00 39.69 1.98
2543 2614 5.531659 ACTCGTCGTAGAAATGGATGTATCT 59.468 40.000 0.00 0.00 39.69 1.98
2544 2615 5.759963 ACTCGTCGTAGAAATGGATGTATC 58.240 41.667 0.00 0.00 39.69 2.24
2545 2616 5.769484 ACTCGTCGTAGAAATGGATGTAT 57.231 39.130 0.00 0.00 39.69 2.29
2546 2617 6.682423 TTACTCGTCGTAGAAATGGATGTA 57.318 37.500 0.00 0.00 39.69 2.29
2547 2618 5.571784 TTACTCGTCGTAGAAATGGATGT 57.428 39.130 0.00 0.00 39.69 3.06
2548 2619 7.222031 TCAAATTACTCGTCGTAGAAATGGATG 59.778 37.037 0.00 0.00 39.69 3.51
2549 2620 7.262772 TCAAATTACTCGTCGTAGAAATGGAT 58.737 34.615 0.00 0.00 39.69 3.41
2550 2621 6.623486 TCAAATTACTCGTCGTAGAAATGGA 58.377 36.000 0.00 0.00 39.69 3.41
2551 2622 6.880822 TCAAATTACTCGTCGTAGAAATGG 57.119 37.500 0.00 0.00 39.69 3.16
2552 2623 7.418801 CGTTTCAAATTACTCGTCGTAGAAATG 59.581 37.037 0.00 0.00 39.69 2.32
2553 2624 7.411157 CCGTTTCAAATTACTCGTCGTAGAAAT 60.411 37.037 0.00 0.00 39.69 2.17
2554 2625 6.129115 CCGTTTCAAATTACTCGTCGTAGAAA 60.129 38.462 0.00 0.00 39.69 2.52
2555 2626 5.343058 CCGTTTCAAATTACTCGTCGTAGAA 59.657 40.000 0.00 0.00 39.69 2.10
2556 2627 4.853196 CCGTTTCAAATTACTCGTCGTAGA 59.147 41.667 0.00 0.00 0.00 2.59
2557 2628 4.853196 TCCGTTTCAAATTACTCGTCGTAG 59.147 41.667 0.00 0.00 0.00 3.51
2558 2629 4.793071 TCCGTTTCAAATTACTCGTCGTA 58.207 39.130 0.00 0.00 0.00 3.43
2559 2630 3.641648 TCCGTTTCAAATTACTCGTCGT 58.358 40.909 0.00 0.00 0.00 4.34
2560 2631 3.060363 CCTCCGTTTCAAATTACTCGTCG 59.940 47.826 0.00 0.00 0.00 5.12
2561 2632 3.370061 CCCTCCGTTTCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
2562 2633 3.007182 TCCCTCCGTTTCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
2563 2634 3.592059 TCCCTCCGTTTCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
2564 2635 4.576879 ACTCCCTCCGTTTCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
2565 2636 4.635699 ACTCCCTCCGTTTCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
2566 2637 5.936372 AGTTACTCCCTCCGTTTCAAATTAC 59.064 40.000 0.00 0.00 0.00 1.89
2567 2638 6.117975 AGTTACTCCCTCCGTTTCAAATTA 57.882 37.500 0.00 0.00 0.00 1.40
2568 2639 4.981812 AGTTACTCCCTCCGTTTCAAATT 58.018 39.130 0.00 0.00 0.00 1.82
2569 2640 4.635699 AGTTACTCCCTCCGTTTCAAAT 57.364 40.909 0.00 0.00 0.00 2.32
2570 2641 4.131596 CAAGTTACTCCCTCCGTTTCAAA 58.868 43.478 0.00 0.00 0.00 2.69
2571 2642 3.135167 ACAAGTTACTCCCTCCGTTTCAA 59.865 43.478 0.00 0.00 0.00 2.69
2572 2643 2.701951 ACAAGTTACTCCCTCCGTTTCA 59.298 45.455 0.00 0.00 0.00 2.69
2573 2644 3.397849 ACAAGTTACTCCCTCCGTTTC 57.602 47.619 0.00 0.00 0.00 2.78
2574 2645 3.899980 AGTACAAGTTACTCCCTCCGTTT 59.100 43.478 0.00 0.00 0.00 3.60
2575 2646 3.504375 AGTACAAGTTACTCCCTCCGTT 58.496 45.455 0.00 0.00 0.00 4.44
2576 2647 3.087781 GAGTACAAGTTACTCCCTCCGT 58.912 50.000 0.00 0.00 38.33 4.69
2577 2648 2.097142 CGAGTACAAGTTACTCCCTCCG 59.903 54.545 5.98 0.00 40.48 4.63
2578 2649 2.159268 GCGAGTACAAGTTACTCCCTCC 60.159 54.545 5.98 0.00 40.48 4.30
2579 2650 2.159268 GGCGAGTACAAGTTACTCCCTC 60.159 54.545 5.98 0.00 40.48 4.30
2580 2651 1.823610 GGCGAGTACAAGTTACTCCCT 59.176 52.381 5.98 0.00 40.48 4.20
2581 2652 1.823610 AGGCGAGTACAAGTTACTCCC 59.176 52.381 5.98 7.88 40.48 4.30
2582 2653 2.159268 GGAGGCGAGTACAAGTTACTCC 60.159 54.545 5.98 0.76 40.48 3.85
2583 2654 2.477525 CGGAGGCGAGTACAAGTTACTC 60.478 54.545 0.00 1.94 40.26 2.59
2584 2655 1.471684 CGGAGGCGAGTACAAGTTACT 59.528 52.381 0.00 0.00 0.00 2.24
2585 2656 1.470098 TCGGAGGCGAGTACAAGTTAC 59.530 52.381 0.00 0.00 0.00 2.50
2595 2666 1.064357 GTAGAGTTTCTCGGAGGCGAG 59.936 57.143 4.96 0.00 35.36 5.03
2601 2672 3.752665 AGTCACAGTAGAGTTTCTCGGA 58.247 45.455 0.00 0.00 35.36 4.55
2603 2674 3.670991 GCAAGTCACAGTAGAGTTTCTCG 59.329 47.826 0.00 0.00 35.36 4.04
2604 2675 4.621991 TGCAAGTCACAGTAGAGTTTCTC 58.378 43.478 0.00 0.00 0.00 2.87
2607 2678 5.023533 TCTTGCAAGTCACAGTAGAGTTT 57.976 39.130 25.19 0.00 0.00 2.66
2611 2720 3.641436 TCCTTCTTGCAAGTCACAGTAGA 59.359 43.478 25.19 9.72 0.00 2.59
2619 2728 5.515184 GTCTCTTTTTCCTTCTTGCAAGTC 58.485 41.667 25.19 0.00 0.00 3.01
2697 2809 2.046892 TTCTCCGCTTCTGCTGCC 60.047 61.111 0.00 0.00 36.97 4.85
2718 2836 2.022129 GTCCGTGCGAGGTTGAGTG 61.022 63.158 0.00 0.00 0.00 3.51
2791 2910 4.143514 GGATTTGATTATTCGTCGAGAGCG 60.144 45.833 0.00 0.00 39.35 5.03
2873 2996 0.811915 CTACTGGTCGTGGTCTCCTG 59.188 60.000 0.00 0.00 0.00 3.86
2881 3004 3.562505 GTGTCTTGTACTACTGGTCGTG 58.437 50.000 0.00 0.00 0.00 4.35
2887 3010 2.596452 CAGCGGTGTCTTGTACTACTG 58.404 52.381 6.41 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.