Multiple sequence alignment - TraesCS5D01G410000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G410000 chr5D 100.000 8070 0 0 1 8070 473364867 473356798 0.000000e+00 14903.0
1 TraesCS5D01G410000 chr5D 79.100 689 117 17 1 675 370945008 370945683 4.440000e-122 449.0
2 TraesCS5D01G410000 chr5D 95.699 93 4 0 2295 2387 369424158 369424250 5.050000e-32 150.0
3 TraesCS5D01G410000 chr5D 93.069 101 5 2 2290 2388 384795392 384795492 6.530000e-31 147.0
4 TraesCS5D01G410000 chr5D 75.899 278 56 4 36 303 325676285 325676009 1.830000e-26 132.0
5 TraesCS5D01G410000 chr5D 88.073 109 12 1 4525 4632 565441343 565441235 2.360000e-25 128.0
6 TraesCS5D01G410000 chr5D 81.395 129 22 2 137 264 65751165 65751038 3.980000e-18 104.0
7 TraesCS5D01G410000 chr5D 82.895 76 13 0 1161 1236 474213488 474213563 1.450000e-07 69.4
8 TraesCS5D01G410000 chr5D 97.143 35 1 0 4632 4666 421485503 421485469 8.750000e-05 60.2
9 TraesCS5D01G410000 chr5B 94.968 1848 85 4 3140 4986 580690312 580688472 0.000000e+00 2891.0
10 TraesCS5D01G410000 chr5B 95.991 848 28 3 6045 6890 580687662 580686819 0.000000e+00 1373.0
11 TraesCS5D01G410000 chr5B 94.798 769 29 4 5100 5865 580688400 580687640 0.000000e+00 1188.0
12 TraesCS5D01G410000 chr5B 92.368 760 33 9 2383 3141 580691110 580690375 0.000000e+00 1059.0
13 TraesCS5D01G410000 chr5B 92.903 620 32 11 821 1428 580693019 580692400 0.000000e+00 891.0
14 TraesCS5D01G410000 chr5B 87.024 709 36 18 6923 7600 580686726 580686043 0.000000e+00 749.0
15 TraesCS5D01G410000 chr5B 93.407 455 27 3 801 1253 580694969 580694516 0.000000e+00 671.0
16 TraesCS5D01G410000 chr5B 83.468 617 69 18 1440 2037 580692355 580691753 1.980000e-150 544.0
17 TraesCS5D01G410000 chr5B 83.165 594 83 7 1 593 113448030 113448607 1.990000e-145 527.0
18 TraesCS5D01G410000 chr5B 79.681 689 114 16 1 675 644884234 644884910 2.640000e-129 473.0
19 TraesCS5D01G410000 chr5B 83.871 341 52 3 4 344 305589102 305588765 1.010000e-83 322.0
20 TraesCS5D01G410000 chr5B 92.661 218 13 2 7856 8070 580685824 580685607 2.190000e-80 311.0
21 TraesCS5D01G410000 chr5B 87.330 221 22 4 2087 2301 580691329 580691109 1.740000e-61 248.0
22 TraesCS5D01G410000 chr5B 96.774 124 4 0 4978 5101 402870173 402870296 2.950000e-49 207.0
23 TraesCS5D01G410000 chr5B 79.845 258 40 6 340 596 305587119 305586873 2.310000e-40 178.0
24 TraesCS5D01G410000 chr5B 96.739 92 3 0 2298 2389 271181474 271181565 3.900000e-33 154.0
25 TraesCS5D01G410000 chr5B 95.745 94 4 0 2298 2391 135750733 135750640 1.400000e-32 152.0
26 TraesCS5D01G410000 chr5B 94.845 97 4 1 2290 2386 10447718 10447623 5.050000e-32 150.0
27 TraesCS5D01G410000 chr5B 88.764 89 9 1 681 768 305586727 305586639 3.080000e-19 108.0
28 TraesCS5D01G410000 chr5B 81.250 80 15 0 1154 1233 581140982 581141061 1.880000e-06 65.8
29 TraesCS5D01G410000 chr5B 83.824 68 9 2 702 768 580679872 580679806 6.760000e-06 63.9
30 TraesCS5D01G410000 chr5B 100.000 33 0 0 5107 5139 580688458 580688426 2.430000e-05 62.1
31 TraesCS5D01G410000 chr5B 100.000 30 0 0 7755 7784 580685921 580685950 1.000000e-03 56.5
32 TraesCS5D01G410000 chr5A 93.490 1874 88 9 3140 4986 593176822 593174956 0.000000e+00 2754.0
33 TraesCS5D01G410000 chr5A 90.330 1241 55 18 6292 7475 593173376 593172144 0.000000e+00 1567.0
34 TraesCS5D01G410000 chr5A 95.059 769 30 5 5100 5865 593174957 593174194 0.000000e+00 1203.0
35 TraesCS5D01G410000 chr5A 93.700 619 34 5 814 1428 593179222 593178605 0.000000e+00 922.0
36 TraesCS5D01G410000 chr5A 93.911 542 23 6 2381 2919 593177585 593177051 0.000000e+00 809.0
37 TraesCS5D01G410000 chr5A 84.081 446 67 3 5 449 358483126 358482684 2.080000e-115 427.0
38 TraesCS5D01G410000 chr5A 86.897 290 25 6 7471 7755 593172113 593171832 6.080000e-81 313.0
39 TraesCS5D01G410000 chr5A 91.403 221 12 5 7856 8070 593171677 593171458 6.120000e-76 296.0
40 TraesCS5D01G410000 chr5A 91.262 206 14 3 2100 2301 593177787 593177582 2.220000e-70 278.0
41 TraesCS5D01G410000 chr5A 75.972 566 104 15 43 596 444078677 444078132 6.210000e-66 263.0
42 TraesCS5D01G410000 chr5A 82.700 237 25 10 1440 1664 593178560 593178328 6.390000e-46 196.0
43 TraesCS5D01G410000 chr5A 90.647 139 6 2 3003 3141 593177016 593176885 2.310000e-40 178.0
44 TraesCS5D01G410000 chr5A 97.872 47 1 0 6129 6175 593173747 593173701 1.870000e-11 82.4
45 TraesCS5D01G410000 chr5A 81.928 83 15 0 1154 1236 593468265 593468347 4.040000e-08 71.3
46 TraesCS5D01G410000 chr5A 100.000 28 0 0 801 828 593179262 593179235 1.500000e-02 52.8
47 TraesCS5D01G410000 chr7D 81.364 601 92 12 1 591 83753745 83754335 9.480000e-129 472.0
48 TraesCS5D01G410000 chr7D 84.043 94 7 6 681 772 176767080 176767167 5.190000e-12 84.2
49 TraesCS5D01G410000 chr7D 87.324 71 6 2 681 751 176570951 176571018 2.410000e-10 78.7
50 TraesCS5D01G410000 chr7A 81.890 508 88 3 1 508 403165219 403165722 7.490000e-115 425.0
51 TraesCS5D01G410000 chr7A 94.949 99 4 1 2298 2396 173487564 173487661 3.900000e-33 154.0
52 TraesCS5D01G410000 chr7A 94.444 36 2 0 4633 4668 30139534 30139499 1.000000e-03 56.5
53 TraesCS5D01G410000 chr3D 82.477 428 60 8 3 430 390079965 390080377 2.140000e-95 361.0
54 TraesCS5D01G410000 chr7B 79.616 417 81 2 102 515 124537859 124537444 6.120000e-76 296.0
55 TraesCS5D01G410000 chr7B 97.778 90 2 0 2295 2384 388716421 388716510 1.080000e-33 156.0
56 TraesCS5D01G410000 chr7B 87.273 110 14 0 4523 4632 447705491 447705600 8.500000e-25 126.0
57 TraesCS5D01G410000 chr7B 83.951 81 3 2 681 751 143154049 143154129 1.450000e-07 69.4
58 TraesCS5D01G410000 chr7B 97.143 35 1 0 4632 4666 627413828 627413862 8.750000e-05 60.2
59 TraesCS5D01G410000 chr2A 92.233 206 13 3 5832 6036 751271370 751271167 1.020000e-73 289.0
60 TraesCS5D01G410000 chr2A 76.740 546 104 12 6 531 70216584 70216042 4.770000e-72 283.0
61 TraesCS5D01G410000 chr2A 92.908 141 10 0 6173 6313 81787416 81787556 1.060000e-48 206.0
62 TraesCS5D01G410000 chr2A 88.535 157 14 2 6173 6329 330099536 330099688 3.850000e-43 187.0
63 TraesCS5D01G410000 chr2A 94.059 101 6 0 2297 2397 522494871 522494971 3.900000e-33 154.0
64 TraesCS5D01G410000 chr2A 89.362 94 10 0 1145 1238 418400477 418400384 1.420000e-22 119.0
65 TraesCS5D01G410000 chr6D 96.512 172 6 0 5865 6036 95293872 95293701 1.330000e-72 285.0
66 TraesCS5D01G410000 chr6D 93.158 190 12 1 5863 6052 128903060 128903248 2.220000e-70 278.0
67 TraesCS5D01G410000 chr6D 76.357 516 75 22 3 515 221222684 221223155 4.870000e-57 233.0
68 TraesCS5D01G410000 chr6D 86.385 213 26 2 3 212 124846978 124847190 6.300000e-56 230.0
69 TraesCS5D01G410000 chr6D 92.199 141 11 0 6173 6313 289507610 289507470 4.940000e-47 200.0
70 TraesCS5D01G410000 chr6D 75.603 373 67 17 1 368 371298022 371297669 6.480000e-36 163.0
71 TraesCS5D01G410000 chr6D 96.739 92 3 0 2298 2389 36675396 36675487 3.900000e-33 154.0
72 TraesCS5D01G410000 chr6D 98.837 86 1 0 2298 2383 470635708 470635623 3.900000e-33 154.0
73 TraesCS5D01G410000 chr6D 97.701 87 2 0 2298 2384 157328109 157328023 5.050000e-32 150.0
74 TraesCS5D01G410000 chr6D 96.667 90 2 1 2298 2386 27308697 27308608 1.810000e-31 148.0
75 TraesCS5D01G410000 chr6D 96.629 89 3 0 2297 2385 260030284 260030196 1.810000e-31 148.0
76 TraesCS5D01G410000 chr6D 94.681 94 5 0 2298 2391 221219316 221219409 6.530000e-31 147.0
77 TraesCS5D01G410000 chr6D 94.681 94 5 0 2297 2390 385916940 385917033 6.530000e-31 147.0
78 TraesCS5D01G410000 chr6D 95.652 92 3 1 2298 2388 443958604 443958513 6.530000e-31 147.0
79 TraesCS5D01G410000 chr6D 91.262 103 9 0 2290 2392 166796202 166796304 3.040000e-29 141.0
80 TraesCS5D01G410000 chr6D 88.073 109 12 1 4525 4632 14121576 14121684 2.360000e-25 128.0
81 TraesCS5D01G410000 chr6D 88.073 109 12 1 4525 4632 98415640 98415532 2.360000e-25 128.0
82 TraesCS5D01G410000 chr6D 82.143 140 22 3 4495 4632 271605413 271605275 5.120000e-22 117.0
83 TraesCS5D01G410000 chr4A 95.506 178 8 0 5859 6036 595848122 595847945 1.330000e-72 285.0
84 TraesCS5D01G410000 chr4A 92.500 40 3 0 4482 4521 633353256 633353217 3.150000e-04 58.4
85 TraesCS5D01G410000 chr4A 92.500 40 3 0 4482 4521 635932323 635932362 3.150000e-04 58.4
86 TraesCS5D01G410000 chr2D 96.023 176 6 1 5862 6036 327962409 327962234 1.330000e-72 285.0
87 TraesCS5D01G410000 chr2D 88.298 94 11 0 1145 1238 316658121 316658028 6.620000e-21 113.0
88 TraesCS5D01G410000 chrUn 95.506 178 7 1 5860 6036 277314236 277314059 4.770000e-72 283.0
89 TraesCS5D01G410000 chrUn 96.800 125 4 0 4982 5106 100620760 100620884 8.210000e-50 209.0
90 TraesCS5D01G410000 chrUn 97.674 86 2 0 2298 2383 478445674 478445759 1.810000e-31 148.0
91 TraesCS5D01G410000 chrUn 97.647 85 2 0 2298 2382 16901625 16901709 6.530000e-31 147.0
92 TraesCS5D01G410000 chrUn 94.624 93 5 0 2298 2390 8111450 8111542 2.350000e-30 145.0
93 TraesCS5D01G410000 chrUn 95.455 88 4 0 2298 2385 13209343 13209430 3.040000e-29 141.0
94 TraesCS5D01G410000 chrUn 93.684 95 4 2 2298 2390 15963710 15963804 3.040000e-29 141.0
95 TraesCS5D01G410000 chrUn 94.505 91 5 0 2294 2384 55723608 55723698 3.040000e-29 141.0
96 TraesCS5D01G410000 chrUn 94.565 92 4 1 2298 2388 230602168 230602077 3.040000e-29 141.0
97 TraesCS5D01G410000 chrUn 96.471 85 3 0 2298 2382 244923896 244923812 3.040000e-29 141.0
98 TraesCS5D01G410000 chrUn 96.471 85 3 0 2298 2382 287095784 287095700 3.040000e-29 141.0
99 TraesCS5D01G410000 chrUn 90.566 106 10 0 4527 4632 319649915 319649810 3.040000e-29 141.0
100 TraesCS5D01G410000 chrUn 94.444 90 5 0 2295 2384 5551067 5551156 1.090000e-28 139.0
101 TraesCS5D01G410000 chrUn 90.099 101 10 0 2298 2398 359670096 359669996 1.830000e-26 132.0
102 TraesCS5D01G410000 chrUn 94.444 36 1 1 4487 4521 252717075 252717040 4.000000e-03 54.7
103 TraesCS5D01G410000 chr2B 95.506 178 7 1 5860 6036 314778878 314779055 4.770000e-72 283.0
104 TraesCS5D01G410000 chr2B 94.030 134 7 1 4984 5116 794701450 794701317 1.370000e-47 202.0
105 TraesCS5D01G410000 chr2B 88.991 109 10 2 4525 4632 89504567 89504460 5.080000e-27 134.0
106 TraesCS5D01G410000 chr2B 89.773 88 9 0 1145 1232 384673290 384673377 6.620000e-21 113.0
107 TraesCS5D01G410000 chr4B 95.455 176 8 0 5861 6036 588430814 588430989 1.710000e-71 281.0
108 TraesCS5D01G410000 chr4B 98.851 87 1 0 2298 2384 624442134 624442048 1.080000e-33 156.0
109 TraesCS5D01G410000 chr4B 97.701 87 2 0 2297 2383 581959352 581959438 5.050000e-32 150.0
110 TraesCS5D01G410000 chr4B 83.333 96 16 0 172 267 591927602 591927697 1.120000e-13 89.8
111 TraesCS5D01G410000 chr6B 92.347 196 13 2 5843 6036 314586930 314586735 2.220000e-70 278.0
112 TraesCS5D01G410000 chr6B 83.206 262 40 2 46 307 436764252 436764509 3.760000e-58 237.0
113 TraesCS5D01G410000 chr6B 97.541 122 3 0 4982 5103 343032848 343032969 8.210000e-50 209.0
114 TraesCS5D01G410000 chr6B 91.489 141 12 0 6173 6313 560197005 560196865 2.300000e-45 195.0
115 TraesCS5D01G410000 chr6B 86.667 75 6 4 678 751 638418097 638418026 6.710000e-11 80.5
116 TraesCS5D01G410000 chr6B 86.667 75 7 3 678 751 638429444 638429372 6.710000e-11 80.5
117 TraesCS5D01G410000 chr3A 89.947 189 13 4 5864 6052 67314656 67314474 1.050000e-58 239.0
118 TraesCS5D01G410000 chr3A 88.387 155 18 0 6175 6329 169854315 169854469 3.850000e-43 187.0
119 TraesCS5D01G410000 chr3A 100.000 31 0 0 4641 4671 695051597 695051627 3.150000e-04 58.4
120 TraesCS5D01G410000 chr3B 99.153 118 1 0 4984 5101 692838368 692838251 6.340000e-51 213.0
121 TraesCS5D01G410000 chr3B 97.541 122 3 0 4984 5105 475816888 475817009 8.210000e-50 209.0
122 TraesCS5D01G410000 chr3B 97.297 37 1 0 4640 4676 376632516 376632552 6.760000e-06 63.9
123 TraesCS5D01G410000 chr1B 97.561 123 3 0 4984 5106 613246046 613245924 2.280000e-50 211.0
124 TraesCS5D01G410000 chr1B 95.276 127 6 0 4985 5111 77544286 77544412 1.370000e-47 202.0
125 TraesCS5D01G410000 chr1B 95.789 95 4 0 2298 2392 47517430 47517336 3.900000e-33 154.0
126 TraesCS5D01G410000 chr1B 94.792 96 4 1 2298 2393 371456423 371456329 1.810000e-31 148.0
127 TraesCS5D01G410000 chr1B 92.308 104 6 2 2285 2387 112863674 112863572 6.530000e-31 147.0
128 TraesCS5D01G410000 chr1B 75.636 275 47 16 1 270 96506228 96506487 1.420000e-22 119.0
129 TraesCS5D01G410000 chr1B 87.778 90 8 2 681 769 555781529 555781616 1.430000e-17 102.0
130 TraesCS5D01G410000 chr1B 90.141 71 4 2 681 751 105038224 105038291 1.120000e-13 89.8
131 TraesCS5D01G410000 chr1B 100.000 30 0 0 4639 4668 150361191 150361220 1.000000e-03 56.5
132 TraesCS5D01G410000 chr1B 94.444 36 1 1 4494 4529 497276056 497276022 4.000000e-03 54.7
133 TraesCS5D01G410000 chr1D 96.825 126 3 1 4980 5105 284915950 284915826 8.210000e-50 209.0
134 TraesCS5D01G410000 chr1D 88.679 159 14 3 6176 6331 80020610 80020453 2.970000e-44 191.0
135 TraesCS5D01G410000 chr1D 96.809 94 1 2 2298 2390 85191597 85191505 1.080000e-33 156.0
136 TraesCS5D01G410000 chr1D 95.876 97 3 1 2297 2393 225701820 225701725 1.080000e-33 156.0
137 TraesCS5D01G410000 chr1D 75.768 293 45 21 1 286 51045802 51046075 3.060000e-24 124.0
138 TraesCS5D01G410000 chr4D 92.908 141 10 0 6173 6313 98888227 98888367 1.060000e-48 206.0
139 TraesCS5D01G410000 chr4D 92.254 142 9 1 6173 6314 298773166 298773305 4.940000e-47 200.0
140 TraesCS5D01G410000 chr4D 98.864 88 1 0 2297 2384 61961272 61961185 3.010000e-34 158.0
141 TraesCS5D01G410000 chr4D 93.814 97 6 0 2295 2391 436376714 436376810 6.530000e-31 147.0
142 TraesCS5D01G410000 chr4D 94.681 94 5 0 2298 2391 498898046 498897953 6.530000e-31 147.0
143 TraesCS5D01G410000 chr4D 93.878 98 3 3 2298 2392 169119898 169119995 2.350000e-30 145.0
144 TraesCS5D01G410000 chr4D 94.444 36 1 1 4487 4521 312868386 312868351 4.000000e-03 54.7
145 TraesCS5D01G410000 chr6A 95.745 94 4 0 2298 2391 115288045 115288138 1.400000e-32 152.0
146 TraesCS5D01G410000 chr6A 75.451 277 46 13 1 270 133420762 133420501 1.840000e-21 115.0
147 TraesCS5D01G410000 chr6A 100.000 36 0 0 4633 4668 532022040 532022075 5.230000e-07 67.6
148 TraesCS5D01G410000 chr6A 94.737 38 0 2 4486 4521 22203292 22203329 3.150000e-04 58.4
149 TraesCS5D01G410000 chr1A 94.737 95 5 0 2298 2392 366288213 366288307 1.810000e-31 148.0
150 TraesCS5D01G410000 chr1A 93.878 98 5 1 2287 2384 108383092 108382996 6.530000e-31 147.0
151 TraesCS5D01G410000 chr1A 87.963 108 13 0 4525 4632 56105922 56105815 2.360000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G410000 chr5D 473356798 473364867 8069 True 14903.000000 14903 100.000000 1 8070 1 chr5D.!!$R4 8069
1 TraesCS5D01G410000 chr5D 370945008 370945683 675 False 449.000000 449 79.100000 1 675 1 chr5D.!!$F2 674
2 TraesCS5D01G410000 chr5B 580685607 580694969 9362 True 907.918182 2891 92.265273 801 8070 11 chr5B.!!$R5 7269
3 TraesCS5D01G410000 chr5B 113448030 113448607 577 False 527.000000 527 83.165000 1 593 1 chr5B.!!$F1 592
4 TraesCS5D01G410000 chr5B 644884234 644884910 676 False 473.000000 473 79.681000 1 675 1 chr5B.!!$F6 674
5 TraesCS5D01G410000 chr5B 305586639 305589102 2463 True 202.666667 322 84.160000 4 768 3 chr5B.!!$R4 764
6 TraesCS5D01G410000 chr5A 593171458 593179262 7804 True 720.933333 2754 92.272583 801 8070 12 chr5A.!!$R3 7269
7 TraesCS5D01G410000 chr5A 444078132 444078677 545 True 263.000000 263 75.972000 43 596 1 chr5A.!!$R2 553
8 TraesCS5D01G410000 chr7D 83753745 83754335 590 False 472.000000 472 81.364000 1 591 1 chr7D.!!$F1 590
9 TraesCS5D01G410000 chr7A 403165219 403165722 503 False 425.000000 425 81.890000 1 508 1 chr7A.!!$F2 507
10 TraesCS5D01G410000 chr2A 70216042 70216584 542 True 283.000000 283 76.740000 6 531 1 chr2A.!!$R1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
682 2397 0.600782 TCGCGCGGAAGGTAGTTTTT 60.601 50.0 31.69 0.00 0.00 1.94 F
1366 5047 0.310854 GCTGCAAAGTTAGGCGTGTT 59.689 50.0 0.00 0.00 0.00 3.32 F
2813 6958 0.388649 AAGAGTAGAGCGTGCAACCG 60.389 55.0 0.00 0.00 0.00 4.44 F
3196 7407 0.028902 GAACTCACAAACACCCGCAC 59.971 55.0 0.00 0.00 0.00 5.34 F
3492 7703 0.178995 TGTCATGCCTTGCACTTCCA 60.179 50.0 0.00 0.00 43.04 3.53 F
5000 9312 0.629596 ACATACTCCCTCCGTCTGGA 59.370 55.0 0.00 0.00 43.88 3.86 F
5097 9409 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
5875 10190 0.041684 CCCAATTTGAAGGGGAGCCT 59.958 55.0 0.00 0.00 45.08 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 5687 0.034896 TTCCGAGAAACCAGCAGGAC 59.965 55.0 0.35 0.0 38.69 3.85 R
3196 7407 0.618981 GAGTGGGTAAAGGGGGTCAG 59.381 60.0 0.00 0.0 0.00 3.51 R
3796 8007 0.250234 CCGATCCAGAGGACAAAGCA 59.750 55.0 0.00 0.0 32.98 3.91 R
5078 9390 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R
5082 9394 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.0 44.66 3.13 R
5895 10210 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.0 0.00 0.0 44.78 4.85 R
5915 10230 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.0 0.00 0.0 0.00 4.94 R
7275 12282 0.171007 CGCCACATTCATCAACCACC 59.829 55.0 0.00 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 39 4.737353 TCTTGCGATGCATATTCATGTC 57.263 40.909 0.00 0.00 38.76 3.06
95 104 5.724328 AGCTTCATCATCGAGACTACAAAA 58.276 37.500 0.00 0.00 0.00 2.44
97 106 5.807520 GCTTCATCATCGAGACTACAAAAGA 59.192 40.000 0.00 0.00 0.00 2.52
111 120 3.613563 ACAAAAGAACGTACACGCAATG 58.386 40.909 0.85 0.00 44.43 2.82
119 129 3.064207 ACGTACACGCAATGAACTTCAT 58.936 40.909 0.85 0.00 44.43 2.57
120 130 3.120683 ACGTACACGCAATGAACTTCATG 60.121 43.478 4.99 1.84 44.43 3.07
149 159 7.650834 ATTGGAATTAACAATTGAAACACCG 57.349 32.000 13.59 0.00 35.11 4.94
212 238 1.495951 GAACACGTTGGATGCGGTC 59.504 57.895 0.00 0.00 0.00 4.79
231 257 3.118454 CGGTCGGCATGGACACAC 61.118 66.667 0.00 0.00 38.70 3.82
283 317 1.217183 AGGTGGATAAGGAGCTCCGTA 59.783 52.381 27.45 27.45 42.08 4.02
357 2042 1.060698 CGTCCGGCTTCGAGATTTTTC 59.939 52.381 0.00 0.00 35.61 2.29
365 2050 2.395360 CGAGATTTTTCGCCGGCCA 61.395 57.895 23.46 4.67 33.39 5.36
452 2137 1.074951 CGGCCCCCTTCTTCTTTGT 59.925 57.895 0.00 0.00 0.00 2.83
676 2391 4.124351 CTGGTCGCGCGGAAGGTA 62.124 66.667 31.69 6.17 0.00 3.08
677 2392 4.124351 TGGTCGCGCGGAAGGTAG 62.124 66.667 31.69 0.00 0.00 3.18
678 2393 4.125695 GGTCGCGCGGAAGGTAGT 62.126 66.667 31.69 0.00 0.00 2.73
679 2394 2.126189 GTCGCGCGGAAGGTAGTT 60.126 61.111 31.69 0.00 0.00 2.24
680 2395 1.735559 GTCGCGCGGAAGGTAGTTT 60.736 57.895 31.69 0.00 0.00 2.66
681 2396 1.005867 TCGCGCGGAAGGTAGTTTT 60.006 52.632 31.69 0.00 0.00 2.43
682 2397 0.600782 TCGCGCGGAAGGTAGTTTTT 60.601 50.000 31.69 0.00 0.00 1.94
683 2398 1.070038 CGCGCGGAAGGTAGTTTTTA 58.930 50.000 24.84 0.00 0.00 1.52
684 2399 1.201845 CGCGCGGAAGGTAGTTTTTAC 60.202 52.381 24.84 0.00 0.00 2.01
685 2400 1.799994 GCGCGGAAGGTAGTTTTTACA 59.200 47.619 8.83 0.00 0.00 2.41
686 2401 2.417586 GCGCGGAAGGTAGTTTTTACAT 59.582 45.455 8.83 0.00 0.00 2.29
687 2402 3.484721 GCGCGGAAGGTAGTTTTTACATC 60.485 47.826 8.83 0.00 0.00 3.06
688 2403 3.930848 CGCGGAAGGTAGTTTTTACATCT 59.069 43.478 0.00 0.00 0.00 2.90
689 2404 4.032558 CGCGGAAGGTAGTTTTTACATCTC 59.967 45.833 0.00 0.00 0.00 2.75
690 2405 4.331992 GCGGAAGGTAGTTTTTACATCTCC 59.668 45.833 0.00 0.00 0.00 3.71
691 2406 4.565564 CGGAAGGTAGTTTTTACATCTCCG 59.434 45.833 0.00 0.00 0.00 4.63
692 2407 4.331992 GGAAGGTAGTTTTTACATCTCCGC 59.668 45.833 0.00 0.00 0.00 5.54
693 2408 3.518590 AGGTAGTTTTTACATCTCCGCG 58.481 45.455 0.00 0.00 0.00 6.46
694 2409 3.194116 AGGTAGTTTTTACATCTCCGCGA 59.806 43.478 8.23 0.00 0.00 5.87
695 2410 3.550678 GGTAGTTTTTACATCTCCGCGAG 59.449 47.826 8.23 3.02 0.00 5.03
709 2424 3.290776 GCGAGGCGGAGATGTAATT 57.709 52.632 0.00 0.00 0.00 1.40
710 2425 2.433868 GCGAGGCGGAGATGTAATTA 57.566 50.000 0.00 0.00 0.00 1.40
711 2426 2.960819 GCGAGGCGGAGATGTAATTAT 58.039 47.619 0.00 0.00 0.00 1.28
712 2427 3.326747 GCGAGGCGGAGATGTAATTATT 58.673 45.455 0.00 0.00 0.00 1.40
713 2428 3.746492 GCGAGGCGGAGATGTAATTATTT 59.254 43.478 0.00 0.00 0.00 1.40
714 2429 4.213482 GCGAGGCGGAGATGTAATTATTTT 59.787 41.667 0.00 0.00 0.00 1.82
715 2430 5.277828 GCGAGGCGGAGATGTAATTATTTTT 60.278 40.000 0.00 0.00 0.00 1.94
749 2464 4.863491 CATCTGTTGGAGAGGTGTTTTTG 58.137 43.478 0.00 0.00 32.80 2.44
750 2465 3.287222 TCTGTTGGAGAGGTGTTTTTGG 58.713 45.455 0.00 0.00 0.00 3.28
751 2466 2.362077 CTGTTGGAGAGGTGTTTTTGGG 59.638 50.000 0.00 0.00 0.00 4.12
752 2467 2.291930 TGTTGGAGAGGTGTTTTTGGGT 60.292 45.455 0.00 0.00 0.00 4.51
753 2468 2.764010 GTTGGAGAGGTGTTTTTGGGTT 59.236 45.455 0.00 0.00 0.00 4.11
754 2469 3.108847 TGGAGAGGTGTTTTTGGGTTT 57.891 42.857 0.00 0.00 0.00 3.27
755 2470 3.445987 TGGAGAGGTGTTTTTGGGTTTT 58.554 40.909 0.00 0.00 0.00 2.43
756 2471 3.841255 TGGAGAGGTGTTTTTGGGTTTTT 59.159 39.130 0.00 0.00 0.00 1.94
757 2472 5.024118 TGGAGAGGTGTTTTTGGGTTTTTA 58.976 37.500 0.00 0.00 0.00 1.52
758 2473 5.128008 TGGAGAGGTGTTTTTGGGTTTTTAG 59.872 40.000 0.00 0.00 0.00 1.85
759 2474 5.361571 GGAGAGGTGTTTTTGGGTTTTTAGA 59.638 40.000 0.00 0.00 0.00 2.10
760 2475 6.041637 GGAGAGGTGTTTTTGGGTTTTTAGAT 59.958 38.462 0.00 0.00 0.00 1.98
761 2476 6.816136 AGAGGTGTTTTTGGGTTTTTAGATG 58.184 36.000 0.00 0.00 0.00 2.90
762 2477 5.364778 AGGTGTTTTTGGGTTTTTAGATGC 58.635 37.500 0.00 0.00 0.00 3.91
763 2478 5.104735 AGGTGTTTTTGGGTTTTTAGATGCA 60.105 36.000 0.00 0.00 0.00 3.96
764 2479 5.586643 GGTGTTTTTGGGTTTTTAGATGCAA 59.413 36.000 0.00 0.00 0.00 4.08
765 2480 6.094186 GGTGTTTTTGGGTTTTTAGATGCAAA 59.906 34.615 0.00 0.00 0.00 3.68
766 2481 7.362142 GGTGTTTTTGGGTTTTTAGATGCAAAA 60.362 33.333 0.00 0.00 0.00 2.44
767 2482 7.696035 GTGTTTTTGGGTTTTTAGATGCAAAAG 59.304 33.333 0.00 0.00 0.00 2.27
768 2483 6.370433 TTTTGGGTTTTTAGATGCAAAAGC 57.630 33.333 0.00 0.00 39.72 3.51
769 2484 4.679373 TGGGTTTTTAGATGCAAAAGCA 57.321 36.364 11.01 0.00 41.39 3.91
770 2485 5.226194 TGGGTTTTTAGATGCAAAAGCAT 57.774 34.783 11.01 2.13 41.39 3.79
771 2486 6.352016 TGGGTTTTTAGATGCAAAAGCATA 57.648 33.333 11.01 0.00 41.39 3.14
772 2487 6.945218 TGGGTTTTTAGATGCAAAAGCATAT 58.055 32.000 11.01 2.81 41.39 1.78
773 2488 8.072321 TGGGTTTTTAGATGCAAAAGCATATA 57.928 30.769 11.01 1.77 41.39 0.86
774 2489 7.978975 TGGGTTTTTAGATGCAAAAGCATATAC 59.021 33.333 11.01 0.00 41.39 1.47
775 2490 7.978975 GGGTTTTTAGATGCAAAAGCATATACA 59.021 33.333 11.01 0.00 41.39 2.29
776 2491 9.533253 GGTTTTTAGATGCAAAAGCATATACAT 57.467 29.630 2.56 0.00 40.04 2.29
780 2495 6.814506 AGATGCAAAAGCATATACATCTCC 57.185 37.500 2.56 0.00 39.96 3.71
781 2496 6.301486 AGATGCAAAAGCATATACATCTCCA 58.699 36.000 2.56 0.00 39.96 3.86
782 2497 6.774170 AGATGCAAAAGCATATACATCTCCAA 59.226 34.615 2.56 0.00 39.96 3.53
783 2498 6.964807 TGCAAAAGCATATACATCTCCAAT 57.035 33.333 0.00 0.00 0.00 3.16
784 2499 8.640063 ATGCAAAAGCATATACATCTCCAATA 57.360 30.769 0.38 0.00 0.00 1.90
785 2500 7.874940 TGCAAAAGCATATACATCTCCAATAC 58.125 34.615 0.00 0.00 0.00 1.89
786 2501 7.720957 TGCAAAAGCATATACATCTCCAATACT 59.279 33.333 0.00 0.00 0.00 2.12
787 2502 9.219603 GCAAAAGCATATACATCTCCAATACTA 57.780 33.333 0.00 0.00 0.00 1.82
789 2504 9.950496 AAAAGCATATACATCTCCAATACTAGG 57.050 33.333 0.00 0.00 0.00 3.02
790 2505 8.901472 AAGCATATACATCTCCAATACTAGGA 57.099 34.615 0.00 0.00 0.00 2.94
941 2685 2.604139 CTCACCTAATCTCTCCCTCCC 58.396 57.143 0.00 0.00 0.00 4.30
1019 4699 4.593864 GAGCGATGCCCCTCCGAC 62.594 72.222 0.00 0.00 0.00 4.79
1221 4901 4.111016 TACGAGGCGCTCACCGTG 62.111 66.667 20.33 0.00 39.71 4.94
1309 4990 2.945008 GCTGATGGCTTGTATGCTTGTA 59.055 45.455 0.00 0.00 38.06 2.41
1310 4991 3.378112 GCTGATGGCTTGTATGCTTGTAA 59.622 43.478 0.00 0.00 38.06 2.41
1334 5015 1.454539 GGTTAGTGCTGGGTGTGGT 59.545 57.895 0.00 0.00 0.00 4.16
1345 5026 2.882137 CTGGGTGTGGTTTATTCGTTGT 59.118 45.455 0.00 0.00 0.00 3.32
1354 5035 3.376540 GTTTATTCGTTGTGGCTGCAAA 58.623 40.909 0.50 0.00 0.00 3.68
1366 5047 0.310854 GCTGCAAAGTTAGGCGTGTT 59.689 50.000 0.00 0.00 0.00 3.32
1367 5048 1.533731 GCTGCAAAGTTAGGCGTGTTA 59.466 47.619 0.00 0.00 0.00 2.41
1368 5049 2.031508 GCTGCAAAGTTAGGCGTGTTAA 60.032 45.455 0.00 0.00 0.00 2.01
1369 5050 3.810373 CTGCAAAGTTAGGCGTGTTAAG 58.190 45.455 0.00 0.00 0.00 1.85
1370 5051 3.207778 TGCAAAGTTAGGCGTGTTAAGT 58.792 40.909 0.00 0.00 0.00 2.24
1372 5053 3.249080 GCAAAGTTAGGCGTGTTAAGTGA 59.751 43.478 0.00 0.00 0.00 3.41
1374 5055 5.731126 GCAAAGTTAGGCGTGTTAAGTGAAA 60.731 40.000 0.00 0.00 0.00 2.69
1375 5056 6.435428 CAAAGTTAGGCGTGTTAAGTGAAAT 58.565 36.000 0.00 0.00 0.00 2.17
1376 5057 6.628919 AAGTTAGGCGTGTTAAGTGAAATT 57.371 33.333 0.00 0.00 0.00 1.82
1377 5058 6.628919 AGTTAGGCGTGTTAAGTGAAATTT 57.371 33.333 0.00 0.00 0.00 1.82
1378 5059 7.733402 AGTTAGGCGTGTTAAGTGAAATTTA 57.267 32.000 0.00 0.00 0.00 1.40
1379 5060 7.578852 AGTTAGGCGTGTTAAGTGAAATTTAC 58.421 34.615 0.00 0.00 0.00 2.01
1380 5061 5.366829 AGGCGTGTTAAGTGAAATTTACC 57.633 39.130 0.00 0.00 0.00 2.85
1419 5103 1.031571 TCATCCCCGTCAATTGCAGC 61.032 55.000 0.00 0.00 0.00 5.25
1420 5104 1.033746 CATCCCCGTCAATTGCAGCT 61.034 55.000 0.00 0.00 0.00 4.24
1429 5120 3.848019 CGTCAATTGCAGCTTGTGATTAC 59.152 43.478 0.00 2.07 0.00 1.89
1438 5129 2.095853 AGCTTGTGATTACGGAATTGCG 59.904 45.455 18.40 18.40 0.00 4.85
1444 5161 5.060506 TGTGATTACGGAATTGCGGAATAT 58.939 37.500 27.09 9.92 0.00 1.28
1460 5177 6.202762 TGCGGAATATGAGCAAAATAGTACTG 59.797 38.462 5.39 0.00 38.01 2.74
1461 5178 6.202954 GCGGAATATGAGCAAAATAGTACTGT 59.797 38.462 5.39 0.00 0.00 3.55
1463 5180 8.276325 CGGAATATGAGCAAAATAGTACTGTTC 58.724 37.037 5.39 0.00 0.00 3.18
1466 5183 9.890629 AATATGAGCAAAATAGTACTGTTCTGA 57.109 29.630 9.63 0.00 0.00 3.27
1484 5205 8.775220 TGTTCTGATAAAACGTGTGTTAAATG 57.225 30.769 0.00 0.00 37.31 2.32
1489 5210 6.418226 TGATAAAACGTGTGTTAAATGTTGCC 59.582 34.615 0.00 0.00 37.31 4.52
1500 5228 5.069781 TGTTAAATGTTGCCTTGGTAGCTTT 59.930 36.000 0.00 0.00 0.00 3.51
1501 5229 3.665745 AATGTTGCCTTGGTAGCTTTG 57.334 42.857 0.00 0.00 0.00 2.77
1581 5310 2.896685 GGTGTTTGATTTCCCATGTCCA 59.103 45.455 0.00 0.00 0.00 4.02
1583 5312 4.709397 GGTGTTTGATTTCCCATGTCCATA 59.291 41.667 0.00 0.00 0.00 2.74
1584 5313 5.363580 GGTGTTTGATTTCCCATGTCCATAT 59.636 40.000 0.00 0.00 0.00 1.78
1592 5321 7.785985 TGATTTCCCATGTCCATATTCAGAAAT 59.214 33.333 0.00 0.00 34.93 2.17
1593 5322 9.300681 GATTTCCCATGTCCATATTCAGAAATA 57.699 33.333 0.00 0.00 33.01 1.40
1622 5351 3.628832 TTGAAGGATGGGGGTTTTCTT 57.371 42.857 0.00 0.00 0.00 2.52
1624 5353 3.506398 TGAAGGATGGGGGTTTTCTTTC 58.494 45.455 0.00 0.00 0.00 2.62
1632 5361 5.187621 TGGGGGTTTTCTTTCCAGTATAG 57.812 43.478 0.00 0.00 0.00 1.31
1646 5375 5.245531 TCCAGTATAGTGCTTTTGACCTTG 58.754 41.667 1.67 0.00 0.00 3.61
1654 5383 3.503748 GTGCTTTTGACCTTGTCTAGCAT 59.496 43.478 16.26 0.00 40.73 3.79
1658 5387 6.127925 TGCTTTTGACCTTGTCTAGCATTATG 60.128 38.462 12.05 0.00 37.31 1.90
1671 5408 7.998383 TGTCTAGCATTATGTTTCACCCAATAT 59.002 33.333 0.00 0.00 0.00 1.28
1672 5409 9.502091 GTCTAGCATTATGTTTCACCCAATATA 57.498 33.333 0.00 0.00 0.00 0.86
1723 5461 7.060633 CGGTAATTGTGCTACATTTGTTCTTTC 59.939 37.037 0.00 0.00 0.00 2.62
1744 5482 5.114764 TCTCTCACCATGGAAATATGCAA 57.885 39.130 21.47 0.00 0.00 4.08
1745 5483 5.698104 TCTCTCACCATGGAAATATGCAAT 58.302 37.500 21.47 0.00 0.00 3.56
1746 5484 6.131264 TCTCTCACCATGGAAATATGCAATT 58.869 36.000 21.47 0.00 0.00 2.32
1747 5485 6.608405 TCTCTCACCATGGAAATATGCAATTT 59.392 34.615 21.47 0.00 0.00 1.82
1748 5486 7.124599 TCTCTCACCATGGAAATATGCAATTTT 59.875 33.333 21.47 0.00 0.00 1.82
1749 5487 7.622713 TCTCACCATGGAAATATGCAATTTTT 58.377 30.769 21.47 0.00 30.01 1.94
1794 5542 3.679083 GCCGCTGTTCTTACTAATCCACT 60.679 47.826 0.00 0.00 0.00 4.00
1809 5558 2.322658 TCCACTTCTTCCAGTAACCGT 58.677 47.619 0.00 0.00 0.00 4.83
1872 5621 0.960861 GGTAGCTCCAAGCAACCACC 60.961 60.000 0.00 0.00 45.56 4.61
1877 5626 1.202348 GCTCCAAGCAACCACCATAAC 59.798 52.381 0.00 0.00 41.89 1.89
1956 5705 1.671742 GTCCTGCTGGTTTCTCGGA 59.328 57.895 9.73 0.00 34.23 4.55
1961 5710 2.558359 CCTGCTGGTTTCTCGGAAAAAT 59.442 45.455 0.51 0.00 0.00 1.82
1966 5715 6.754193 TGCTGGTTTCTCGGAAAAATAAAAT 58.246 32.000 1.37 0.00 0.00 1.82
1971 5720 9.771534 TGGTTTCTCGGAAAAATAAAATTCATT 57.228 25.926 1.37 0.00 0.00 2.57
2000 5749 8.387190 CTTGATGTACATCATGTGATACCAAT 57.613 34.615 33.23 0.00 46.12 3.16
2018 5767 9.878599 GATACCAATTGTATATTTGAACCTTCG 57.121 33.333 4.43 0.00 40.31 3.79
2019 5768 7.095695 ACCAATTGTATATTTGAACCTTCGG 57.904 36.000 4.43 0.00 0.00 4.30
2021 5770 7.067008 ACCAATTGTATATTTGAACCTTCGGAG 59.933 37.037 4.43 0.00 0.00 4.63
2024 5773 6.302535 TGTATATTTGAACCTTCGGAGGAA 57.697 37.500 19.39 0.00 46.74 3.36
2027 5776 3.502123 TTTGAACCTTCGGAGGAATGT 57.498 42.857 19.39 0.00 46.74 2.71
2037 5786 3.138304 TCGGAGGAATGTGTTTGTTCAG 58.862 45.455 0.00 0.00 0.00 3.02
2039 5788 3.303990 CGGAGGAATGTGTTTGTTCAGTG 60.304 47.826 0.00 0.00 0.00 3.66
2044 5793 6.248433 AGGAATGTGTTTGTTCAGTGGATAT 58.752 36.000 0.00 0.00 0.00 1.63
2047 5796 7.391148 AATGTGTTTGTTCAGTGGATATACC 57.609 36.000 0.00 0.00 39.54 2.73
2061 5810 6.493189 TGGATATACCAGCAAGTGTATTCA 57.507 37.500 1.28 1.28 44.64 2.57
2069 5818 7.088589 ACCAGCAAGTGTATTCATTGTATTC 57.911 36.000 0.00 0.00 0.00 1.75
2081 5830 9.102757 GTATTCATTGTATTCTCTTTCTCTGCA 57.897 33.333 0.00 0.00 0.00 4.41
2090 5839 9.323985 GTATTCTCTTTCTCTGCATCAACTTAT 57.676 33.333 0.00 0.00 0.00 1.73
2091 5840 8.804912 ATTCTCTTTCTCTGCATCAACTTATT 57.195 30.769 0.00 0.00 0.00 1.40
2092 5841 8.627208 TTCTCTTTCTCTGCATCAACTTATTT 57.373 30.769 0.00 0.00 0.00 1.40
2093 5842 8.627208 TCTCTTTCTCTGCATCAACTTATTTT 57.373 30.769 0.00 0.00 0.00 1.82
2094 5843 8.509690 TCTCTTTCTCTGCATCAACTTATTTTG 58.490 33.333 0.00 0.00 0.00 2.44
2096 5845 8.292448 TCTTTCTCTGCATCAACTTATTTTGAC 58.708 33.333 0.00 0.00 38.31 3.18
2098 5847 8.846943 TTCTCTGCATCAACTTATTTTGACTA 57.153 30.769 0.00 0.00 38.31 2.59
2164 6304 7.462331 CGTCGTGATTAATTGTAGTTGATTCGT 60.462 37.037 0.00 0.00 0.00 3.85
2169 6309 6.811253 TTAATTGTAGTTGATTCGTTGGCT 57.189 33.333 0.00 0.00 0.00 4.75
2186 6326 1.556911 GGCTCTCCTTGTTCCATCTGA 59.443 52.381 0.00 0.00 0.00 3.27
2202 6342 8.498054 TTCCATCTGAACTTCATAAGATTGTC 57.502 34.615 0.00 0.00 0.00 3.18
2203 6343 7.623630 TCCATCTGAACTTCATAAGATTGTCA 58.376 34.615 0.00 0.00 0.00 3.58
2204 6344 7.767659 TCCATCTGAACTTCATAAGATTGTCAG 59.232 37.037 0.00 0.00 32.90 3.51
2220 6363 4.305989 TGTCAGGAAAAAGTGTGAATGC 57.694 40.909 0.00 0.00 0.00 3.56
2268 6412 7.314393 ACGTCTTTCTAAGAATACCTGTCTTC 58.686 38.462 0.00 0.00 39.67 2.87
2271 6415 7.977293 GTCTTTCTAAGAATACCTGTCTTCTCC 59.023 40.741 0.00 0.00 39.67 3.71
2297 6441 6.097356 TGCGACTTCTAATCAGTAACGATTT 58.903 36.000 0.00 0.00 36.92 2.17
2298 6442 7.252708 TGCGACTTCTAATCAGTAACGATTTA 58.747 34.615 0.00 0.00 36.92 1.40
2299 6443 7.219535 TGCGACTTCTAATCAGTAACGATTTAC 59.780 37.037 0.00 0.00 36.92 2.01
2301 6445 8.945930 CGACTTCTAATCAGTAACGATTTACTC 58.054 37.037 0.00 0.00 43.91 2.59
2302 6446 9.235537 GACTTCTAATCAGTAACGATTTACTCC 57.764 37.037 0.00 0.00 43.91 3.85
2303 6447 8.196103 ACTTCTAATCAGTAACGATTTACTCCC 58.804 37.037 0.00 0.00 43.91 4.30
2304 6448 7.893124 TCTAATCAGTAACGATTTACTCCCT 57.107 36.000 0.00 0.00 43.91 4.20
2305 6449 7.938715 TCTAATCAGTAACGATTTACTCCCTC 58.061 38.462 0.00 0.00 43.91 4.30
2306 6450 6.793505 AATCAGTAACGATTTACTCCCTCT 57.206 37.500 0.00 0.00 43.91 3.69
2307 6451 5.578005 TCAGTAACGATTTACTCCCTCTG 57.422 43.478 0.00 0.00 43.91 3.35
2308 6452 5.014858 TCAGTAACGATTTACTCCCTCTGT 58.985 41.667 0.00 0.00 43.91 3.41
2309 6453 5.103000 CAGTAACGATTTACTCCCTCTGTG 58.897 45.833 0.00 0.00 43.91 3.66
2310 6454 5.014858 AGTAACGATTTACTCCCTCTGTGA 58.985 41.667 0.00 0.00 43.91 3.58
2311 6455 4.884668 AACGATTTACTCCCTCTGTGAA 57.115 40.909 0.00 0.00 0.00 3.18
2312 6456 4.189639 ACGATTTACTCCCTCTGTGAAC 57.810 45.455 0.00 0.00 0.00 3.18
2313 6457 3.833070 ACGATTTACTCCCTCTGTGAACT 59.167 43.478 0.00 0.00 0.00 3.01
2314 6458 5.014858 ACGATTTACTCCCTCTGTGAACTA 58.985 41.667 0.00 0.00 0.00 2.24
2315 6459 5.479375 ACGATTTACTCCCTCTGTGAACTAA 59.521 40.000 0.00 0.00 0.00 2.24
2316 6460 6.154706 ACGATTTACTCCCTCTGTGAACTAAT 59.845 38.462 0.00 0.00 0.00 1.73
2317 6461 7.341256 ACGATTTACTCCCTCTGTGAACTAATA 59.659 37.037 0.00 0.00 0.00 0.98
2318 6462 8.361139 CGATTTACTCCCTCTGTGAACTAATAT 58.639 37.037 0.00 0.00 0.00 1.28
2322 6466 9.931698 TTACTCCCTCTGTGAACTAATATAAGA 57.068 33.333 0.00 0.00 0.00 2.10
2323 6467 8.472007 ACTCCCTCTGTGAACTAATATAAGAG 57.528 38.462 0.00 0.00 0.00 2.85
2324 6468 8.062536 ACTCCCTCTGTGAACTAATATAAGAGT 58.937 37.037 0.00 0.00 0.00 3.24
2325 6469 8.239038 TCCCTCTGTGAACTAATATAAGAGTG 57.761 38.462 0.00 0.00 0.00 3.51
2326 6470 7.839705 TCCCTCTGTGAACTAATATAAGAGTGT 59.160 37.037 0.00 0.00 0.00 3.55
2327 6471 8.478877 CCCTCTGTGAACTAATATAAGAGTGTT 58.521 37.037 0.00 0.00 0.00 3.32
2328 6472 9.877178 CCTCTGTGAACTAATATAAGAGTGTTT 57.123 33.333 0.00 0.00 0.00 2.83
2356 6500 9.733219 GATTACTAAAGTAGTGATCTAAACGCT 57.267 33.333 11.11 0.00 44.10 5.07
2357 6501 9.733219 ATTACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
2358 6502 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
2359 6503 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
2360 6504 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
2361 6505 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
2373 6517 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2374 6518 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2375 6519 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2376 6520 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2377 6521 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2378 6522 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2379 6523 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2392 6536 9.605275 GTTTACGGAGGGAGTACTTTATAAATT 57.395 33.333 0.00 0.00 0.00 1.82
2435 6579 8.678199 CCTCATTATCCCTTTTTCTGTTAGTTC 58.322 37.037 0.00 0.00 0.00 3.01
2495 6639 6.071728 CCTCTTATGCTTTTCATGTTTCCACT 60.072 38.462 0.00 0.00 36.63 4.00
2521 6665 2.710096 ATACCGTGCTAACCATTGCT 57.290 45.000 0.00 0.00 0.00 3.91
2813 6958 0.388649 AAGAGTAGAGCGTGCAACCG 60.389 55.000 0.00 0.00 0.00 4.44
2822 6967 1.463444 AGCGTGCAACCGAGAAAATAC 59.537 47.619 0.24 0.00 0.00 1.89
2823 6968 1.195900 GCGTGCAACCGAGAAAATACA 59.804 47.619 0.24 0.00 0.00 2.29
2826 6971 3.071479 GTGCAACCGAGAAAATACAGGA 58.929 45.455 0.00 0.00 0.00 3.86
2827 6972 3.689649 GTGCAACCGAGAAAATACAGGAT 59.310 43.478 0.00 0.00 0.00 3.24
2944 7091 4.214332 CCAGAAACTCTTTTAGTGTGAGGC 59.786 45.833 0.00 0.00 38.88 4.70
2955 7102 0.394565 GTGTGAGGCCAGAAGTGTCT 59.605 55.000 5.01 0.00 32.85 3.41
2975 7122 6.257630 GTGTCTCATTCTTTCTCTTAGCATCC 59.742 42.308 0.00 0.00 0.00 3.51
2977 7124 6.701400 GTCTCATTCTTTCTCTTAGCATCCTC 59.299 42.308 0.00 0.00 0.00 3.71
2985 7132 6.605471 TTCTCTTAGCATCCTCAACAAGTA 57.395 37.500 0.00 0.00 0.00 2.24
3052 7199 0.723981 GATGGAGACTTGCGAGTTGC 59.276 55.000 8.34 3.36 46.70 4.17
3080 7227 3.181462 TGTCATCATACCTGCCATGTCTC 60.181 47.826 0.00 0.00 0.00 3.36
3167 7378 6.465439 AAGTGACTTGTTTTTAAGGGGAAG 57.535 37.500 0.00 0.00 31.94 3.46
3196 7407 0.028902 GAACTCACAAACACCCGCAC 59.971 55.000 0.00 0.00 0.00 5.34
3229 7440 2.122768 CCCACTCTCCTGGCTAAATCT 58.877 52.381 0.00 0.00 0.00 2.40
3231 7442 2.223923 CCACTCTCCTGGCTAAATCTCG 60.224 54.545 0.00 0.00 0.00 4.04
3233 7444 3.632604 CACTCTCCTGGCTAAATCTCGTA 59.367 47.826 0.00 0.00 0.00 3.43
3245 7456 2.898729 ATCTCGTAGGGCAACATCTG 57.101 50.000 0.00 0.00 39.74 2.90
3281 7492 4.041691 ACACTACCTCCTGCAAAGTAACAT 59.958 41.667 0.00 0.00 0.00 2.71
3349 7560 6.989155 ATGGAAAATATGATTGATGCCAGT 57.011 33.333 0.00 0.00 0.00 4.00
3462 7673 2.428171 AGTTAATGCCCACACATGCATC 59.572 45.455 0.00 0.00 46.97 3.91
3492 7703 0.178995 TGTCATGCCTTGCACTTCCA 60.179 50.000 0.00 0.00 43.04 3.53
3520 7731 8.922931 AAATAAAAATGCCTTTCTTGGTGATT 57.077 26.923 0.00 0.00 0.00 2.57
3521 7732 8.922931 AATAAAAATGCCTTTCTTGGTGATTT 57.077 26.923 0.00 0.00 0.00 2.17
3524 7735 5.665916 AATGCCTTTCTTGGTGATTTAGG 57.334 39.130 0.00 0.00 0.00 2.69
3822 8033 1.139853 GTCCTCTGGATCGGCAGAAAT 59.860 52.381 3.67 0.00 32.73 2.17
3834 8045 5.247507 TCGGCAGAAATATTTGTGGAATG 57.752 39.130 22.61 2.14 32.60 2.67
3978 8190 4.100963 TCTTGAAAGGTTCTCTGTGTAGCA 59.899 41.667 0.00 0.00 0.00 3.49
4087 8306 7.813645 AGGATTTAGTGAAACACCGTTTTATC 58.186 34.615 0.00 0.00 41.43 1.75
4147 8366 8.697846 ATATCAGTGATTGTTGAGCATTTTTG 57.302 30.769 11.68 0.00 0.00 2.44
4155 8374 4.190001 TGTTGAGCATTTTTGTGTGCAAT 58.810 34.783 0.00 0.00 43.63 3.56
4176 8395 5.720371 ATATAAGTGCTAGGTCTCTGCTG 57.280 43.478 0.00 0.00 0.00 4.41
4187 8406 7.158021 GCTAGGTCTCTGCTGTATATTTTGAT 58.842 38.462 0.00 0.00 0.00 2.57
4214 8433 4.247267 AGTCATGGTTTCAAACATGCAG 57.753 40.909 12.04 0.00 43.11 4.41
4216 8435 2.964464 TCATGGTTTCAAACATGCAGGT 59.036 40.909 12.04 0.00 43.11 4.00
4235 8454 5.689819 CAGGTAGTTGCTTATTTGTGACAC 58.310 41.667 0.00 0.00 0.00 3.67
4352 8571 6.168389 TGTTATGATTGATCATGATCTCCGG 58.832 40.000 30.65 0.00 46.34 5.14
4522 8741 6.380846 TCCCTCCAATCCAAATTAATTGACTG 59.619 38.462 0.39 0.00 41.85 3.51
4539 8758 3.166679 GACTGAAGTTGTACTCCCTCCT 58.833 50.000 0.00 0.00 0.00 3.69
4543 8762 3.174779 GAAGTTGTACTCCCTCCTTCCT 58.825 50.000 0.00 0.00 0.00 3.36
4613 8842 5.263968 AGGTACATCTATTTCCACGACAG 57.736 43.478 0.00 0.00 0.00 3.51
4685 8914 4.082733 GGAGTACCATTTTTCTTGCTCCAC 60.083 45.833 0.00 0.00 40.51 4.02
4990 9302 8.556213 TTGTTTTATCACTACAACATACTCCC 57.444 34.615 0.00 0.00 29.97 4.30
4991 9303 7.913789 TGTTTTATCACTACAACATACTCCCT 58.086 34.615 0.00 0.00 0.00 4.20
4992 9304 8.038944 TGTTTTATCACTACAACATACTCCCTC 58.961 37.037 0.00 0.00 0.00 4.30
4993 9305 6.726490 TTATCACTACAACATACTCCCTCC 57.274 41.667 0.00 0.00 0.00 4.30
4994 9306 3.021695 TCACTACAACATACTCCCTCCG 58.978 50.000 0.00 0.00 0.00 4.63
4995 9307 2.758979 CACTACAACATACTCCCTCCGT 59.241 50.000 0.00 0.00 0.00 4.69
4996 9308 3.022406 ACTACAACATACTCCCTCCGTC 58.978 50.000 0.00 0.00 0.00 4.79
4997 9309 2.233305 ACAACATACTCCCTCCGTCT 57.767 50.000 0.00 0.00 0.00 4.18
4998 9310 1.825474 ACAACATACTCCCTCCGTCTG 59.175 52.381 0.00 0.00 0.00 3.51
4999 9311 1.137086 CAACATACTCCCTCCGTCTGG 59.863 57.143 0.00 0.00 0.00 3.86
5000 9312 0.629596 ACATACTCCCTCCGTCTGGA 59.370 55.000 0.00 0.00 43.88 3.86
5001 9313 1.006758 ACATACTCCCTCCGTCTGGAA 59.993 52.381 0.00 0.00 45.87 3.53
5002 9314 2.108168 CATACTCCCTCCGTCTGGAAA 58.892 52.381 0.00 0.00 45.87 3.13
5003 9315 2.544844 TACTCCCTCCGTCTGGAAAT 57.455 50.000 0.00 0.00 45.87 2.17
5004 9316 2.544844 ACTCCCTCCGTCTGGAAATA 57.455 50.000 0.00 0.00 45.87 1.40
5005 9317 2.108970 ACTCCCTCCGTCTGGAAATAC 58.891 52.381 0.00 0.00 45.87 1.89
5006 9318 2.292323 ACTCCCTCCGTCTGGAAATACT 60.292 50.000 0.00 0.00 45.87 2.12
5007 9319 2.766828 CTCCCTCCGTCTGGAAATACTT 59.233 50.000 0.00 0.00 45.87 2.24
5008 9320 2.500098 TCCCTCCGTCTGGAAATACTTG 59.500 50.000 0.00 0.00 45.87 3.16
5009 9321 2.236395 CCCTCCGTCTGGAAATACTTGT 59.764 50.000 0.00 0.00 45.87 3.16
5010 9322 3.522553 CCTCCGTCTGGAAATACTTGTC 58.477 50.000 0.00 0.00 45.87 3.18
5011 9323 3.179830 CTCCGTCTGGAAATACTTGTCG 58.820 50.000 0.00 0.00 45.87 4.35
5012 9324 2.094390 TCCGTCTGGAAATACTTGTCGG 60.094 50.000 0.00 0.00 42.85 4.79
5013 9325 2.094390 CCGTCTGGAAATACTTGTCGGA 60.094 50.000 0.00 0.00 38.03 4.55
5014 9326 3.179830 CGTCTGGAAATACTTGTCGGAG 58.820 50.000 0.00 0.00 0.00 4.63
5015 9327 3.119602 CGTCTGGAAATACTTGTCGGAGA 60.120 47.826 0.00 0.00 0.00 3.71
5016 9328 4.617530 CGTCTGGAAATACTTGTCGGAGAA 60.618 45.833 0.00 0.00 39.69 2.87
5017 9329 5.235516 GTCTGGAAATACTTGTCGGAGAAA 58.764 41.667 0.00 0.00 39.69 2.52
5018 9330 5.875359 GTCTGGAAATACTTGTCGGAGAAAT 59.125 40.000 0.00 0.00 39.69 2.17
5019 9331 5.874810 TCTGGAAATACTTGTCGGAGAAATG 59.125 40.000 0.00 0.00 39.69 2.32
5020 9332 4.394920 TGGAAATACTTGTCGGAGAAATGC 59.605 41.667 0.00 0.00 39.69 3.56
5021 9333 4.394920 GGAAATACTTGTCGGAGAAATGCA 59.605 41.667 0.00 0.00 39.69 3.96
5022 9334 5.066505 GGAAATACTTGTCGGAGAAATGCAT 59.933 40.000 0.00 0.00 39.69 3.96
5023 9335 6.260050 GGAAATACTTGTCGGAGAAATGCATA 59.740 38.462 0.00 0.00 39.69 3.14
5024 9336 7.201696 GGAAATACTTGTCGGAGAAATGCATAA 60.202 37.037 0.00 0.00 39.69 1.90
5025 9337 7.624360 AATACTTGTCGGAGAAATGCATAAA 57.376 32.000 0.00 0.00 39.69 1.40
5026 9338 5.957842 ACTTGTCGGAGAAATGCATAAAA 57.042 34.783 0.00 0.00 39.69 1.52
5027 9339 6.325919 ACTTGTCGGAGAAATGCATAAAAA 57.674 33.333 0.00 0.00 39.69 1.94
5028 9340 6.924111 ACTTGTCGGAGAAATGCATAAAAAT 58.076 32.000 0.00 0.00 39.69 1.82
5029 9341 6.808212 ACTTGTCGGAGAAATGCATAAAAATG 59.192 34.615 0.00 0.00 39.69 2.32
5030 9342 5.649557 TGTCGGAGAAATGCATAAAAATGG 58.350 37.500 0.00 0.00 39.69 3.16
5031 9343 5.417266 TGTCGGAGAAATGCATAAAAATGGA 59.583 36.000 0.00 0.00 39.69 3.41
5032 9344 6.096705 TGTCGGAGAAATGCATAAAAATGGAT 59.903 34.615 0.00 0.00 39.69 3.41
5033 9345 6.418819 GTCGGAGAAATGCATAAAAATGGATG 59.581 38.462 0.00 0.00 39.69 3.51
5034 9346 6.096705 TCGGAGAAATGCATAAAAATGGATGT 59.903 34.615 0.00 0.00 32.82 3.06
5035 9347 7.284261 TCGGAGAAATGCATAAAAATGGATGTA 59.716 33.333 0.00 0.00 32.82 2.29
5036 9348 8.084073 CGGAGAAATGCATAAAAATGGATGTAT 58.916 33.333 0.00 0.00 32.82 2.29
5037 9349 9.415544 GGAGAAATGCATAAAAATGGATGTATC 57.584 33.333 0.00 0.00 32.82 2.24
5071 9383 8.423906 AAATACGTCTAGATACATCCATTCCT 57.576 34.615 0.00 0.00 0.00 3.36
5072 9384 5.968528 ACGTCTAGATACATCCATTCCTC 57.031 43.478 0.00 0.00 0.00 3.71
5073 9385 4.767928 ACGTCTAGATACATCCATTCCTCC 59.232 45.833 0.00 0.00 0.00 4.30
5074 9386 4.142578 CGTCTAGATACATCCATTCCTCCG 60.143 50.000 0.00 0.00 0.00 4.63
5075 9387 5.010933 GTCTAGATACATCCATTCCTCCGA 58.989 45.833 0.00 0.00 0.00 4.55
5076 9388 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
5077 9389 3.576861 AGATACATCCATTCCTCCGACA 58.423 45.455 0.00 0.00 0.00 4.35
5078 9390 3.967326 AGATACATCCATTCCTCCGACAA 59.033 43.478 0.00 0.00 0.00 3.18
5079 9391 2.698855 ACATCCATTCCTCCGACAAG 57.301 50.000 0.00 0.00 0.00 3.16
5080 9392 1.909302 ACATCCATTCCTCCGACAAGT 59.091 47.619 0.00 0.00 0.00 3.16
5081 9393 3.104512 ACATCCATTCCTCCGACAAGTA 58.895 45.455 0.00 0.00 0.00 2.24
5082 9394 3.711704 ACATCCATTCCTCCGACAAGTAT 59.288 43.478 0.00 0.00 0.00 2.12
5083 9395 4.164221 ACATCCATTCCTCCGACAAGTATT 59.836 41.667 0.00 0.00 0.00 1.89
5084 9396 4.837093 TCCATTCCTCCGACAAGTATTT 57.163 40.909 0.00 0.00 0.00 1.40
5085 9397 4.766375 TCCATTCCTCCGACAAGTATTTC 58.234 43.478 0.00 0.00 0.00 2.17
5086 9398 3.877508 CCATTCCTCCGACAAGTATTTCC 59.122 47.826 0.00 0.00 0.00 3.13
5087 9399 2.953466 TCCTCCGACAAGTATTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
5088 9400 1.479323 TCCTCCGACAAGTATTTCCGG 59.521 52.381 0.00 0.00 41.36 5.14
5089 9401 1.479323 CCTCCGACAAGTATTTCCGGA 59.521 52.381 0.00 0.00 45.74 5.14
5090 9402 2.537401 CTCCGACAAGTATTTCCGGAC 58.463 52.381 1.83 0.00 43.47 4.79
5091 9403 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
5092 9404 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
5093 9405 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
5094 9406 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
5095 9407 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
5096 9408 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
5097 9409 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
5098 9410 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
5202 9514 8.400184 TGCTTTTTAATATCTGAGCATAGCAT 57.600 30.769 0.00 0.00 35.43 3.79
5338 9650 8.456221 TGGTATGTATGGATTATGAATACCCA 57.544 34.615 0.00 0.00 37.55 4.51
5362 9674 8.772250 CCATATATGTATCCTGGACTTAATGGT 58.228 37.037 11.73 0.00 0.00 3.55
5496 9808 1.378762 GCAAAGGTGAGCCCCAGTA 59.621 57.895 0.00 0.00 34.57 2.74
5501 9813 1.428869 AGGTGAGCCCCAGTATGATC 58.571 55.000 0.00 0.00 34.07 2.92
5512 9824 2.027377 CCAGTATGATCCTGGCATCTCC 60.027 54.545 3.86 0.00 42.81 3.71
5555 9867 5.412904 AGGCTTGTACTTCTTGCTAAATGTC 59.587 40.000 0.00 0.00 0.00 3.06
5601 9913 4.447290 TGGCCTTTTTGCTAAAAACCTTC 58.553 39.130 18.90 6.07 35.57 3.46
5725 10038 7.556996 TGTAAGAAAGACCTACTCCTCTATCAC 59.443 40.741 0.00 0.00 0.00 3.06
5803 10116 1.813862 CGGTGGCTCCTTTCTGTTGAA 60.814 52.381 3.83 0.00 0.00 2.69
5804 10117 2.519013 GGTGGCTCCTTTCTGTTGAAT 58.481 47.619 0.00 0.00 31.56 2.57
5805 10118 2.893489 GGTGGCTCCTTTCTGTTGAATT 59.107 45.455 0.00 0.00 31.56 2.17
5806 10119 4.079253 GGTGGCTCCTTTCTGTTGAATTA 58.921 43.478 0.00 0.00 31.56 1.40
5807 10120 4.156739 GGTGGCTCCTTTCTGTTGAATTAG 59.843 45.833 0.00 0.00 31.56 1.73
5819 10134 5.425217 TCTGTTGAATTAGGGCTATGACTGA 59.575 40.000 0.00 0.00 0.00 3.41
5820 10135 5.428253 TGTTGAATTAGGGCTATGACTGAC 58.572 41.667 0.00 0.00 0.00 3.51
5821 10136 5.189736 TGTTGAATTAGGGCTATGACTGACT 59.810 40.000 0.00 0.00 0.00 3.41
5837 10152 1.133199 TGACTGCCCACTCCCAAATTT 60.133 47.619 0.00 0.00 0.00 1.82
5865 10180 3.559171 GCTCTGTACAGGACCCAATTTGA 60.559 47.826 22.48 0.00 0.00 2.69
5866 10181 4.651778 CTCTGTACAGGACCCAATTTGAA 58.348 43.478 22.48 0.00 0.00 2.69
5867 10182 4.651778 TCTGTACAGGACCCAATTTGAAG 58.348 43.478 22.48 0.00 0.00 3.02
5868 10183 3.758554 CTGTACAGGACCCAATTTGAAGG 59.241 47.826 15.49 0.00 0.00 3.46
5874 10189 2.595558 CCCAATTTGAAGGGGAGCC 58.404 57.895 0.00 0.00 45.08 4.70
5875 10190 0.041684 CCCAATTTGAAGGGGAGCCT 59.958 55.000 0.00 0.00 45.08 4.58
5876 10191 1.553184 CCCAATTTGAAGGGGAGCCTT 60.553 52.381 0.00 0.00 45.08 4.35
5877 10192 1.551883 CCAATTTGAAGGGGAGCCTTG 59.448 52.381 0.00 0.00 0.00 3.61
5878 10193 1.551883 CAATTTGAAGGGGAGCCTTGG 59.448 52.381 0.00 0.00 0.00 3.61
5879 10194 0.615827 ATTTGAAGGGGAGCCTTGGC 60.616 55.000 2.97 2.97 0.00 4.52
5880 10195 3.567579 TTGAAGGGGAGCCTTGGCG 62.568 63.158 5.95 0.00 0.00 5.69
5888 10203 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
5889 10204 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
5890 10205 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
5891 10206 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
5892 10207 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
5893 10208 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
5894 10209 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
5899 10214 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
5900 10215 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
5901 10216 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
5902 10217 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
5903 10218 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
5904 10219 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
5923 10238 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
5924 10239 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
5926 10241 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
5927 10242 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
5928 10243 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
5931 10246 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
5932 10247 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
5933 10248 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
5934 10249 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
5935 10250 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
5936 10251 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
5937 10252 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
5954 10269 6.591935 TGGAAACAGTCTCTTACAGAAATGT 58.408 36.000 0.00 0.00 35.66 2.71
5955 10270 7.732025 TGGAAACAGTCTCTTACAGAAATGTA 58.268 34.615 0.00 0.00 33.89 2.29
5956 10271 7.872993 TGGAAACAGTCTCTTACAGAAATGTAG 59.127 37.037 0.00 0.00 33.89 2.74
5957 10272 7.332182 GGAAACAGTCTCTTACAGAAATGTAGG 59.668 40.741 0.00 0.00 33.89 3.18
5958 10273 6.287589 ACAGTCTCTTACAGAAATGTAGGG 57.712 41.667 0.00 0.00 33.46 3.53
5959 10274 6.017192 ACAGTCTCTTACAGAAATGTAGGGA 58.983 40.000 0.00 0.00 33.46 4.20
5960 10275 6.497259 ACAGTCTCTTACAGAAATGTAGGGAA 59.503 38.462 0.00 0.00 33.46 3.97
5961 10276 7.016268 ACAGTCTCTTACAGAAATGTAGGGAAA 59.984 37.037 0.00 0.00 33.46 3.13
5962 10277 7.878127 CAGTCTCTTACAGAAATGTAGGGAAAA 59.122 37.037 0.00 0.00 30.72 2.29
5963 10278 8.097662 AGTCTCTTACAGAAATGTAGGGAAAAG 58.902 37.037 0.00 0.00 30.72 2.27
5964 10279 6.879458 TCTCTTACAGAAATGTAGGGAAAAGC 59.121 38.462 0.00 0.00 0.00 3.51
5965 10280 6.779860 TCTTACAGAAATGTAGGGAAAAGCT 58.220 36.000 0.00 0.00 0.00 3.74
5966 10281 6.655003 TCTTACAGAAATGTAGGGAAAAGCTG 59.345 38.462 0.00 0.00 0.00 4.24
5967 10282 3.507622 ACAGAAATGTAGGGAAAAGCTGC 59.492 43.478 0.00 0.00 0.00 5.25
5968 10283 2.749621 AGAAATGTAGGGAAAAGCTGCG 59.250 45.455 0.00 0.00 0.00 5.18
5969 10284 2.200373 AATGTAGGGAAAAGCTGCGT 57.800 45.000 0.00 0.00 0.00 5.24
5970 10285 3.343941 AATGTAGGGAAAAGCTGCGTA 57.656 42.857 0.00 0.00 0.00 4.42
5971 10286 2.088950 TGTAGGGAAAAGCTGCGTAC 57.911 50.000 0.00 0.00 37.28 3.67
5972 10287 1.345089 TGTAGGGAAAAGCTGCGTACA 59.655 47.619 0.00 0.00 42.31 2.90
5973 10288 2.224329 TGTAGGGAAAAGCTGCGTACAA 60.224 45.455 0.00 0.00 41.82 2.41
5974 10289 2.200373 AGGGAAAAGCTGCGTACAAT 57.800 45.000 0.00 0.00 0.00 2.71
5975 10290 3.343941 AGGGAAAAGCTGCGTACAATA 57.656 42.857 0.00 0.00 0.00 1.90
5976 10291 3.270877 AGGGAAAAGCTGCGTACAATAG 58.729 45.455 0.00 0.00 0.00 1.73
5977 10292 2.354821 GGGAAAAGCTGCGTACAATAGG 59.645 50.000 0.00 0.00 0.00 2.57
5978 10293 2.223272 GGAAAAGCTGCGTACAATAGGC 60.223 50.000 0.00 0.00 39.82 3.93
5979 10294 1.379527 AAAGCTGCGTACAATAGGCC 58.620 50.000 0.00 0.00 38.71 5.19
5980 10295 0.463833 AAGCTGCGTACAATAGGCCC 60.464 55.000 0.00 0.00 38.71 5.80
5981 10296 1.146263 GCTGCGTACAATAGGCCCT 59.854 57.895 0.00 0.00 38.71 5.19
5982 10297 0.391597 GCTGCGTACAATAGGCCCTA 59.608 55.000 0.00 0.00 38.71 3.53
5983 10298 1.202604 GCTGCGTACAATAGGCCCTAA 60.203 52.381 0.00 0.00 38.71 2.69
5984 10299 2.755650 CTGCGTACAATAGGCCCTAAG 58.244 52.381 0.00 0.00 38.71 2.18
5985 10300 2.102588 CTGCGTACAATAGGCCCTAAGT 59.897 50.000 0.00 0.00 38.71 2.24
5986 10301 2.159014 TGCGTACAATAGGCCCTAAGTG 60.159 50.000 0.00 6.42 38.71 3.16
5987 10302 2.805657 GCGTACAATAGGCCCTAAGTGG 60.806 54.545 0.00 3.51 33.72 4.00
5988 10303 2.433239 CGTACAATAGGCCCTAAGTGGT 59.567 50.000 0.00 1.98 0.00 4.16
5989 10304 3.492137 CGTACAATAGGCCCTAAGTGGTC 60.492 52.174 0.00 2.18 0.00 4.02
5990 10305 2.557869 ACAATAGGCCCTAAGTGGTCA 58.442 47.619 0.00 0.00 30.21 4.02
5991 10306 2.505819 ACAATAGGCCCTAAGTGGTCAG 59.494 50.000 0.00 0.00 30.21 3.51
5992 10307 2.771943 CAATAGGCCCTAAGTGGTCAGA 59.228 50.000 0.00 0.00 30.21 3.27
5993 10308 1.861982 TAGGCCCTAAGTGGTCAGAC 58.138 55.000 0.00 0.00 30.21 3.51
5994 10309 0.910088 AGGCCCTAAGTGGTCAGACC 60.910 60.000 13.35 13.35 39.22 3.85
5995 10310 1.602771 GCCCTAAGTGGTCAGACCC 59.397 63.158 17.59 8.45 37.50 4.46
5996 10311 0.910088 GCCCTAAGTGGTCAGACCCT 60.910 60.000 17.59 10.65 37.50 4.34
5997 10312 1.657804 CCCTAAGTGGTCAGACCCTT 58.342 55.000 17.59 19.55 37.50 3.95
5998 10313 1.555533 CCCTAAGTGGTCAGACCCTTC 59.444 57.143 20.64 11.05 37.50 3.46
5999 10314 1.555533 CCTAAGTGGTCAGACCCTTCC 59.444 57.143 20.64 6.97 37.50 3.46
6000 10315 1.555533 CTAAGTGGTCAGACCCTTCCC 59.444 57.143 20.64 4.90 37.50 3.97
6001 10316 1.134438 AAGTGGTCAGACCCTTCCCC 61.134 60.000 17.59 0.00 37.50 4.81
6002 10317 2.606519 TGGTCAGACCCTTCCCCG 60.607 66.667 17.59 0.00 37.50 5.73
6003 10318 3.400054 GGTCAGACCCTTCCCCGG 61.400 72.222 8.65 0.00 30.04 5.73
6004 10319 2.284405 GTCAGACCCTTCCCCGGA 60.284 66.667 0.73 0.00 0.00 5.14
6005 10320 1.689582 GTCAGACCCTTCCCCGGAT 60.690 63.158 0.73 0.00 0.00 4.18
6006 10321 1.382695 TCAGACCCTTCCCCGGATC 60.383 63.158 0.73 0.00 0.00 3.36
6007 10322 2.040779 AGACCCTTCCCCGGATCC 60.041 66.667 0.73 0.00 0.00 3.36
6008 10323 2.040779 GACCCTTCCCCGGATCCT 60.041 66.667 10.75 0.00 0.00 3.24
6009 10324 2.366972 ACCCTTCCCCGGATCCTG 60.367 66.667 10.75 2.58 0.00 3.86
6010 10325 3.878667 CCCTTCCCCGGATCCTGC 61.879 72.222 10.75 0.00 0.00 4.85
6011 10326 4.241555 CCTTCCCCGGATCCTGCG 62.242 72.222 10.75 0.00 0.00 5.18
6012 10327 4.918201 CTTCCCCGGATCCTGCGC 62.918 72.222 10.75 0.00 0.00 6.09
6035 10350 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
6036 10351 2.203070 GAGCTACATGCACCGGGG 60.203 66.667 6.32 0.84 45.94 5.73
6037 10352 3.009115 AGCTACATGCACCGGGGT 61.009 61.111 5.12 0.00 45.94 4.95
6038 10353 2.513897 GCTACATGCACCGGGGTC 60.514 66.667 5.12 0.00 42.31 4.46
6039 10354 2.189521 CTACATGCACCGGGGTCC 59.810 66.667 5.12 0.00 0.00 4.46
6052 10367 3.723922 GGTCCGGGCTGCCCTTTA 61.724 66.667 33.39 16.83 42.67 1.85
6053 10368 2.437895 GTCCGGGCTGCCCTTTAC 60.438 66.667 33.39 23.47 42.67 2.01
6054 10369 2.931105 TCCGGGCTGCCCTTTACA 60.931 61.111 33.39 11.10 42.67 2.41
6055 10370 2.438434 CCGGGCTGCCCTTTACAG 60.438 66.667 33.39 17.58 42.67 2.74
6056 10371 2.438434 CGGGCTGCCCTTTACAGG 60.438 66.667 33.39 13.83 42.67 4.00
6057 10372 2.966732 CGGGCTGCCCTTTACAGGA 61.967 63.158 33.39 0.00 44.19 3.86
6058 10373 1.378646 GGGCTGCCCTTTACAGGAC 60.379 63.158 30.42 0.00 44.19 3.85
6059 10374 1.378762 GGCTGCCCTTTACAGGACA 59.621 57.895 7.66 0.00 44.19 4.02
6060 10375 0.960861 GGCTGCCCTTTACAGGACAC 60.961 60.000 7.66 0.00 44.19 3.67
6061 10376 0.250727 GCTGCCCTTTACAGGACACA 60.251 55.000 0.00 0.00 44.19 3.72
6062 10377 1.817740 GCTGCCCTTTACAGGACACAA 60.818 52.381 0.00 0.00 44.19 3.33
6063 10378 2.795329 CTGCCCTTTACAGGACACAAT 58.205 47.619 0.00 0.00 44.19 2.71
6064 10379 3.157087 CTGCCCTTTACAGGACACAATT 58.843 45.455 0.00 0.00 44.19 2.32
6065 10380 3.571590 TGCCCTTTACAGGACACAATTT 58.428 40.909 0.00 0.00 44.19 1.82
6066 10381 3.320541 TGCCCTTTACAGGACACAATTTG 59.679 43.478 0.00 0.00 44.19 2.32
6107 10422 4.258543 ACCCAACAACCAGATAACATACG 58.741 43.478 0.00 0.00 0.00 3.06
6108 10423 4.258543 CCCAACAACCAGATAACATACGT 58.741 43.478 0.00 0.00 0.00 3.57
6109 10424 5.046448 ACCCAACAACCAGATAACATACGTA 60.046 40.000 0.00 0.00 0.00 3.57
6110 10425 5.292589 CCCAACAACCAGATAACATACGTAC 59.707 44.000 0.00 0.00 0.00 3.67
6112 10427 6.035650 CCAACAACCAGATAACATACGTACAG 59.964 42.308 0.00 0.00 0.00 2.74
6113 10428 6.276832 ACAACCAGATAACATACGTACAGT 57.723 37.500 0.00 0.00 0.00 3.55
6114 10429 6.097356 ACAACCAGATAACATACGTACAGTG 58.903 40.000 0.00 0.00 0.00 3.66
6115 10430 4.679662 ACCAGATAACATACGTACAGTGC 58.320 43.478 0.00 0.00 0.00 4.40
6176 11061 3.245229 ACCTTGCCCATTGTGTTCATAGA 60.245 43.478 0.00 0.00 0.00 1.98
6208 11095 6.823689 TCCATTGAGTCTAGGCTAATGTTTTC 59.176 38.462 17.62 0.00 0.00 2.29
6211 11098 9.383519 CATTGAGTCTAGGCTAATGTTTTCTTA 57.616 33.333 0.00 0.00 0.00 2.10
6294 11208 2.165998 CAAAGGGCTCCAAAGGAAGAG 58.834 52.381 0.00 0.00 0.00 2.85
6394 11308 7.554835 TCTTATTCGTGCCACTTACCATTATTT 59.445 33.333 0.00 0.00 0.00 1.40
6617 11531 6.012658 TGGTCAAAGTTCATTAATGCTGAC 57.987 37.500 10.76 14.97 32.94 3.51
6692 11606 8.986847 CAGTATATGTTTGATCATGAGTTCTCC 58.013 37.037 0.09 0.00 0.00 3.71
6804 11718 4.693566 CCGTGAAGCTATGGTAAGTCAAAA 59.306 41.667 0.00 0.00 0.00 2.44
6809 11723 4.007659 AGCTATGGTAAGTCAAAAACCGG 58.992 43.478 0.00 0.00 35.98 5.28
6882 11796 3.002791 TCTTAATGAAGTTGCTCAGCCG 58.997 45.455 0.00 0.00 34.03 5.52
6884 11798 0.890542 AATGAAGTTGCTCAGCCGCA 60.891 50.000 0.00 0.00 38.31 5.69
6913 11854 4.220163 TGCATGCTTTTGACCATATGTTGA 59.780 37.500 20.33 0.00 0.00 3.18
6914 11855 4.802039 GCATGCTTTTGACCATATGTTGAG 59.198 41.667 11.37 0.00 0.00 3.02
6917 11858 4.826733 TGCTTTTGACCATATGTTGAGTGT 59.173 37.500 1.24 0.00 0.00 3.55
6918 11859 5.301551 TGCTTTTGACCATATGTTGAGTGTT 59.698 36.000 1.24 0.00 0.00 3.32
6919 11860 5.630680 GCTTTTGACCATATGTTGAGTGTTG 59.369 40.000 1.24 0.00 0.00 3.33
6921 11862 3.081061 TGACCATATGTTGAGTGTTGCC 58.919 45.455 1.24 0.00 0.00 4.52
6968 11945 7.447374 AATATTTTCACACATCGAAGGTTCA 57.553 32.000 0.00 0.00 0.00 3.18
7097 12101 2.542595 GTGTGAACCGTGTAAAGTGGAG 59.457 50.000 0.00 0.00 0.00 3.86
7098 12102 1.529865 GTGAACCGTGTAAAGTGGAGC 59.470 52.381 0.00 0.00 0.00 4.70
7157 12161 3.704061 ACTGTTACAATGGCAACTTGGTT 59.296 39.130 5.86 0.00 37.61 3.67
7218 12222 2.746277 GCGCGGACAACCCAGAAT 60.746 61.111 8.83 0.00 34.14 2.40
7275 12282 9.814507 GAGTATACTGTTTATACTCGACTGATG 57.185 37.037 10.90 0.00 43.40 3.07
7367 12374 4.442192 GGCAGTCCTAAGATCCAACAGTAG 60.442 50.000 0.00 0.00 0.00 2.57
7378 12385 5.423610 AGATCCAACAGTAGTAGAGTTGCAT 59.576 40.000 8.47 1.33 40.85 3.96
7403 12410 9.874205 ATCAGTGAAATGTATGGGTTATTTTTG 57.126 29.630 0.00 0.00 0.00 2.44
7517 12560 1.328680 GCCTGCACATGACATAACGAG 59.671 52.381 0.00 0.00 0.00 4.18
7569 12612 1.666872 GTTCACAGAACCCGTCCGG 60.667 63.158 0.00 0.00 37.81 5.14
7591 12634 0.535335 GTCTGACCATGCGACCCTTA 59.465 55.000 0.00 0.00 0.00 2.69
7605 12648 3.068165 CGACCCTTATGTGCAGAGTGATA 59.932 47.826 0.00 0.00 0.00 2.15
7611 12654 5.699915 CCTTATGTGCAGAGTGATAATGAGG 59.300 44.000 0.00 0.00 0.00 3.86
7629 12672 1.499056 GCATCACGGAACAGCACAG 59.501 57.895 0.00 0.00 0.00 3.66
7663 12709 4.165180 TGCTGTACTGCCATAGGGATTAAA 59.835 41.667 20.46 0.00 35.59 1.52
7664 12710 5.163099 TGCTGTACTGCCATAGGGATTAAAT 60.163 40.000 20.46 0.00 35.59 1.40
7665 12711 5.412904 GCTGTACTGCCATAGGGATTAAATC 59.587 44.000 13.37 0.00 35.59 2.17
7667 12713 6.533730 TGTACTGCCATAGGGATTAAATCTG 58.466 40.000 0.00 0.00 35.59 2.90
7668 12714 4.401925 ACTGCCATAGGGATTAAATCTGC 58.598 43.478 0.00 0.00 35.59 4.26
7669 12715 3.411446 TGCCATAGGGATTAAATCTGCG 58.589 45.455 0.00 0.00 35.59 5.18
7670 12716 3.072330 TGCCATAGGGATTAAATCTGCGA 59.928 43.478 0.00 0.00 35.59 5.10
7671 12717 4.263462 TGCCATAGGGATTAAATCTGCGAT 60.263 41.667 0.00 0.00 35.59 4.58
7672 12718 4.095483 GCCATAGGGATTAAATCTGCGATG 59.905 45.833 0.00 0.00 35.59 3.84
7673 12719 4.637534 CCATAGGGATTAAATCTGCGATGG 59.362 45.833 0.00 0.00 35.59 3.51
7674 12720 3.864789 AGGGATTAAATCTGCGATGGT 57.135 42.857 0.00 0.00 0.00 3.55
7675 12721 4.974645 AGGGATTAAATCTGCGATGGTA 57.025 40.909 0.00 0.00 0.00 3.25
7676 12722 4.642429 AGGGATTAAATCTGCGATGGTAC 58.358 43.478 0.00 0.00 0.00 3.34
7677 12723 3.751698 GGGATTAAATCTGCGATGGTACC 59.248 47.826 4.43 4.43 0.00 3.34
7685 12732 0.902984 TGCGATGGTACCACCTCTGT 60.903 55.000 19.09 0.00 39.58 3.41
7688 12735 1.825474 CGATGGTACCACCTCTGTTCT 59.175 52.381 19.09 0.00 39.58 3.01
7705 12752 8.669243 CCTCTGTTCTTACTAAATCAAACATCC 58.331 37.037 0.00 0.00 0.00 3.51
7749 12796 7.725251 TCAAATTTGTAGAAAAACATGCTCCT 58.275 30.769 17.47 0.00 0.00 3.69
7767 12814 5.649395 TGCTCCTTCTGATCCAAAATAAGTG 59.351 40.000 0.00 0.00 0.00 3.16
7791 12898 7.377662 GTGTCGTTGGTTTTAGTTCAAATTAGG 59.622 37.037 0.00 0.00 0.00 2.69
7815 12922 9.017509 AGGACCATTATCTGCAACATAATATTG 57.982 33.333 9.29 5.61 0.00 1.90
7908 13052 7.852516 GCACAAAGCTATAAGTTCAGGTATAC 58.147 38.462 0.00 0.00 41.15 1.47
7917 13061 9.543783 CTATAAGTTCAGGTATACTTTGGAACC 57.456 37.037 17.55 0.00 36.25 3.62
7920 13064 5.012354 AGTTCAGGTATACTTTGGAACCGAA 59.988 40.000 17.55 0.00 36.25 4.30
7945 13089 9.883142 AAGAAGTAGAAAAGAAGAGATACATGG 57.117 33.333 0.00 0.00 0.00 3.66
7973 13117 4.817517 CCACCAAGATTAGACTAACACGT 58.182 43.478 0.00 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 104 2.750948 AGTTCATTGCGTGTACGTTCT 58.249 42.857 6.27 0.00 42.22 3.01
97 106 2.867368 TGAAGTTCATTGCGTGTACGTT 59.133 40.909 0.08 0.00 42.22 3.99
133 143 6.442952 CATTCCTTCGGTGTTTCAATTGTTA 58.557 36.000 5.13 0.00 0.00 2.41
166 189 4.929819 ATGTCGCAAAGGTAAAAAGGTT 57.070 36.364 0.00 0.00 0.00 3.50
168 191 6.189677 TGATATGTCGCAAAGGTAAAAAGG 57.810 37.500 0.00 0.00 0.00 3.11
169 192 6.628856 CGATGATATGTCGCAAAGGTAAAAAG 59.371 38.462 0.00 0.00 31.85 2.27
215 241 2.746277 GGTGTGTCCATGCCGACC 60.746 66.667 0.38 0.00 35.97 4.79
283 317 1.613630 ATGGTGTCTTCCTCCGGCT 60.614 57.895 0.00 0.00 0.00 5.52
293 327 4.082523 CCGCCGACCATGGTGTCT 62.083 66.667 25.52 0.00 37.84 3.41
365 2050 4.109675 CGGCGGGGATCCAACCTT 62.110 66.667 15.23 0.00 0.00 3.50
479 2167 1.224592 CCTAGATTTGCCCTGCCGT 59.775 57.895 0.00 0.00 0.00 5.68
480 2168 1.526917 CCCTAGATTTGCCCTGCCG 60.527 63.158 0.00 0.00 0.00 5.69
483 2171 1.105759 GCTGCCCTAGATTTGCCCTG 61.106 60.000 0.00 0.00 0.00 4.45
484 2172 1.228510 GCTGCCCTAGATTTGCCCT 59.771 57.895 0.00 0.00 0.00 5.19
573 2267 3.580319 GGTGCCCTGACCCACCTT 61.580 66.667 2.72 0.00 46.23 3.50
675 2390 3.777478 CCTCGCGGAGATGTAAAAACTA 58.223 45.455 6.13 0.00 0.00 2.24
676 2391 2.618053 CCTCGCGGAGATGTAAAAACT 58.382 47.619 6.13 0.00 0.00 2.66
677 2392 1.062148 GCCTCGCGGAGATGTAAAAAC 59.938 52.381 6.13 0.00 0.00 2.43
678 2393 1.365699 GCCTCGCGGAGATGTAAAAA 58.634 50.000 6.13 0.00 0.00 1.94
679 2394 3.059603 GCCTCGCGGAGATGTAAAA 57.940 52.632 6.13 0.00 0.00 1.52
680 2395 4.827481 GCCTCGCGGAGATGTAAA 57.173 55.556 6.13 0.00 0.00 2.01
691 2406 2.433868 TAATTACATCTCCGCCTCGC 57.566 50.000 0.00 0.00 0.00 5.03
692 2407 5.924475 AAAATAATTACATCTCCGCCTCG 57.076 39.130 0.00 0.00 0.00 4.63
712 2427 6.629128 CCAACAGATGGTGTATATGCAAAAA 58.371 36.000 0.00 0.00 44.85 1.94
713 2428 6.206395 CCAACAGATGGTGTATATGCAAAA 57.794 37.500 0.00 0.00 44.85 2.44
714 2429 5.833406 CCAACAGATGGTGTATATGCAAA 57.167 39.130 0.00 0.00 44.85 3.68
727 2442 4.261741 CCAAAAACACCTCTCCAACAGATG 60.262 45.833 0.00 0.00 0.00 2.90
728 2443 3.891366 CCAAAAACACCTCTCCAACAGAT 59.109 43.478 0.00 0.00 0.00 2.90
729 2444 3.287222 CCAAAAACACCTCTCCAACAGA 58.713 45.455 0.00 0.00 0.00 3.41
730 2445 2.362077 CCCAAAAACACCTCTCCAACAG 59.638 50.000 0.00 0.00 0.00 3.16
731 2446 2.291930 ACCCAAAAACACCTCTCCAACA 60.292 45.455 0.00 0.00 0.00 3.33
732 2447 2.384828 ACCCAAAAACACCTCTCCAAC 58.615 47.619 0.00 0.00 0.00 3.77
733 2448 2.838637 ACCCAAAAACACCTCTCCAA 57.161 45.000 0.00 0.00 0.00 3.53
734 2449 2.838637 AACCCAAAAACACCTCTCCA 57.161 45.000 0.00 0.00 0.00 3.86
735 2450 4.481368 AAAAACCCAAAAACACCTCTCC 57.519 40.909 0.00 0.00 0.00 3.71
736 2451 6.459670 TCTAAAAACCCAAAAACACCTCTC 57.540 37.500 0.00 0.00 0.00 3.20
737 2452 6.685368 GCATCTAAAAACCCAAAAACACCTCT 60.685 38.462 0.00 0.00 0.00 3.69
738 2453 5.465390 GCATCTAAAAACCCAAAAACACCTC 59.535 40.000 0.00 0.00 0.00 3.85
739 2454 5.104735 TGCATCTAAAAACCCAAAAACACCT 60.105 36.000 0.00 0.00 0.00 4.00
740 2455 5.119694 TGCATCTAAAAACCCAAAAACACC 58.880 37.500 0.00 0.00 0.00 4.16
741 2456 6.670077 TTGCATCTAAAAACCCAAAAACAC 57.330 33.333 0.00 0.00 0.00 3.32
742 2457 7.627300 GCTTTTGCATCTAAAAACCCAAAAACA 60.627 33.333 0.00 0.00 46.58 2.83
743 2458 6.690957 GCTTTTGCATCTAAAAACCCAAAAAC 59.309 34.615 0.00 0.00 46.58 2.43
744 2459 6.790282 GCTTTTGCATCTAAAAACCCAAAAA 58.210 32.000 0.00 0.00 46.58 1.94
745 2460 6.370433 GCTTTTGCATCTAAAAACCCAAAA 57.630 33.333 0.00 0.00 46.58 2.44
763 2478 9.950496 CCTAGTATTGGAGATGTATATGCTTTT 57.050 33.333 0.00 0.00 0.00 2.27
764 2479 9.326489 TCCTAGTATTGGAGATGTATATGCTTT 57.674 33.333 0.00 0.00 0.00 3.51
765 2480 8.901472 TCCTAGTATTGGAGATGTATATGCTT 57.099 34.615 0.00 0.00 0.00 3.91
791 2506 4.132336 TGGTGCTGAATCATAAGAGCATC 58.868 43.478 0.00 0.00 43.07 3.91
792 2507 4.135306 CTGGTGCTGAATCATAAGAGCAT 58.865 43.478 0.00 0.00 43.07 3.79
793 2508 3.538591 CTGGTGCTGAATCATAAGAGCA 58.461 45.455 0.00 0.00 39.11 4.26
794 2509 2.877168 CCTGGTGCTGAATCATAAGAGC 59.123 50.000 0.00 0.00 0.00 4.09
795 2510 2.877168 GCCTGGTGCTGAATCATAAGAG 59.123 50.000 0.00 0.00 36.87 2.85
796 2511 2.239402 TGCCTGGTGCTGAATCATAAGA 59.761 45.455 0.00 0.00 42.00 2.10
797 2512 2.646930 TGCCTGGTGCTGAATCATAAG 58.353 47.619 0.00 0.00 42.00 1.73
798 2513 2.804986 TGCCTGGTGCTGAATCATAA 57.195 45.000 0.00 0.00 42.00 1.90
799 2514 2.804986 TTGCCTGGTGCTGAATCATA 57.195 45.000 0.00 0.00 42.00 2.15
1029 4709 3.775654 GCTACGGAGCTGGCTGGT 61.776 66.667 13.91 0.00 45.98 4.00
1143 4823 0.395311 AGACCCTCGCCTTCGACATA 60.395 55.000 0.00 0.00 40.21 2.29
1309 4990 2.556622 CACCCAGCACTAACCGAAATTT 59.443 45.455 0.00 0.00 0.00 1.82
1310 4991 2.159382 CACCCAGCACTAACCGAAATT 58.841 47.619 0.00 0.00 0.00 1.82
1334 5015 3.067461 ACTTTGCAGCCACAACGAATAAA 59.933 39.130 0.00 0.00 0.00 1.40
1345 5026 1.228124 ACGCCTAACTTTGCAGCCA 60.228 52.632 0.00 0.00 0.00 4.75
1354 5035 6.628919 AAATTTCACTTAACACGCCTAACT 57.371 33.333 0.00 0.00 0.00 2.24
1380 5061 2.109425 AGAAAAATCCCCGAACCTCG 57.891 50.000 0.00 0.00 40.07 4.63
1407 5091 2.624316 ATCACAAGCTGCAATTGACG 57.376 45.000 10.34 0.00 0.00 4.35
1419 5103 2.675844 TCCGCAATTCCGTAATCACAAG 59.324 45.455 0.00 0.00 0.00 3.16
1420 5104 2.701107 TCCGCAATTCCGTAATCACAA 58.299 42.857 0.00 0.00 0.00 3.33
1429 5120 1.872952 TGCTCATATTCCGCAATTCCG 59.127 47.619 0.00 0.00 0.00 4.30
1438 5129 9.331282 AGAACAGTACTATTTTGCTCATATTCC 57.669 33.333 0.00 0.00 0.00 3.01
1444 5161 9.719355 TTTATCAGAACAGTACTATTTTGCTCA 57.281 29.630 0.00 0.00 0.00 4.26
1451 5168 8.922676 CACACGTTTTATCAGAACAGTACTATT 58.077 33.333 0.00 0.00 0.00 1.73
1457 5174 7.542534 TTAACACACGTTTTATCAGAACAGT 57.457 32.000 0.00 0.00 36.52 3.55
1460 5177 8.776680 ACATTTAACACACGTTTTATCAGAAC 57.223 30.769 0.00 0.00 36.52 3.01
1461 5178 9.227490 CAACATTTAACACACGTTTTATCAGAA 57.773 29.630 0.00 0.00 36.52 3.02
1463 5180 7.358023 GGCAACATTTAACACACGTTTTATCAG 60.358 37.037 0.00 0.00 36.52 2.90
1465 5182 6.639279 AGGCAACATTTAACACACGTTTTATC 59.361 34.615 0.00 0.00 36.13 1.75
1466 5183 6.508777 AGGCAACATTTAACACACGTTTTAT 58.491 32.000 0.00 0.00 36.13 1.40
1471 5192 3.490078 CCAAGGCAACATTTAACACACGT 60.490 43.478 0.00 0.00 41.41 4.49
1484 5205 0.038251 GCCAAAGCTACCAAGGCAAC 60.038 55.000 9.18 0.00 44.59 4.17
1489 5210 3.774066 GCTTTATGCCAAAGCTACCAAG 58.226 45.455 20.07 0.00 46.64 3.61
1543 5271 6.978080 TCAAACACCAATCTTTAACTCAAAGC 59.022 34.615 0.00 0.00 42.95 3.51
1545 5273 9.883142 AAATCAAACACCAATCTTTAACTCAAA 57.117 25.926 0.00 0.00 0.00 2.69
1563 5291 7.068593 TCTGAATATGGACATGGGAAATCAAAC 59.931 37.037 0.00 0.00 0.00 2.93
1592 5321 9.588432 AAACCCCCATCCTTCAATCTATATATA 57.412 33.333 0.00 0.00 0.00 0.86
1593 5322 8.482378 AAACCCCCATCCTTCAATCTATATAT 57.518 34.615 0.00 0.00 0.00 0.86
1595 5324 6.803587 AAACCCCCATCCTTCAATCTATAT 57.196 37.500 0.00 0.00 0.00 0.86
1597 5326 5.196574 AGAAAACCCCCATCCTTCAATCTAT 59.803 40.000 0.00 0.00 0.00 1.98
1598 5327 4.544152 AGAAAACCCCCATCCTTCAATCTA 59.456 41.667 0.00 0.00 0.00 1.98
1599 5328 3.337909 AGAAAACCCCCATCCTTCAATCT 59.662 43.478 0.00 0.00 0.00 2.40
1600 5329 3.713003 AGAAAACCCCCATCCTTCAATC 58.287 45.455 0.00 0.00 0.00 2.67
1608 5337 2.889512 ACTGGAAAGAAAACCCCCATC 58.110 47.619 0.00 0.00 0.00 3.51
1622 5351 5.499004 AGGTCAAAAGCACTATACTGGAA 57.501 39.130 0.00 0.00 0.00 3.53
1624 5353 5.003804 ACAAGGTCAAAAGCACTATACTGG 58.996 41.667 0.00 0.00 0.00 4.00
1632 5361 2.878406 TGCTAGACAAGGTCAAAAGCAC 59.122 45.455 13.47 0.00 38.84 4.40
1646 5375 6.699575 ATTGGGTGAAACATAATGCTAGAC 57.300 37.500 0.00 0.00 39.98 2.59
1691 5428 6.509418 AATGTAGCACAATTACCGAACATT 57.491 33.333 0.00 0.00 32.90 2.71
1693 5430 5.239744 ACAAATGTAGCACAATTACCGAACA 59.760 36.000 0.00 0.00 0.00 3.18
1698 5435 8.082242 AGAAAGAACAAATGTAGCACAATTACC 58.918 33.333 0.00 0.00 0.00 2.85
1699 5436 9.118236 GAGAAAGAACAAATGTAGCACAATTAC 57.882 33.333 0.00 0.00 0.00 1.89
1701 5438 7.945134 AGAGAAAGAACAAATGTAGCACAATT 58.055 30.769 0.00 0.00 0.00 2.32
1703 5440 6.542005 TGAGAGAAAGAACAAATGTAGCACAA 59.458 34.615 0.00 0.00 0.00 3.33
1705 5442 6.366630 GTGAGAGAAAGAACAAATGTAGCAC 58.633 40.000 0.00 0.00 0.00 4.40
1706 5443 5.470098 GGTGAGAGAAAGAACAAATGTAGCA 59.530 40.000 0.00 0.00 0.00 3.49
1707 5444 5.470098 TGGTGAGAGAAAGAACAAATGTAGC 59.530 40.000 0.00 0.00 0.00 3.58
1723 5461 6.401047 AATTGCATATTTCCATGGTGAGAG 57.599 37.500 12.58 0.13 0.00 3.20
1746 5484 7.366847 TGTCCAAATGAATTAGGTGGAAAAA 57.633 32.000 0.00 0.00 39.99 1.94
1747 5485 6.985653 TGTCCAAATGAATTAGGTGGAAAA 57.014 33.333 0.00 0.00 39.99 2.29
1748 5486 6.574073 GCATGTCCAAATGAATTAGGTGGAAA 60.574 38.462 0.00 0.00 39.99 3.13
1749 5487 5.105392 GCATGTCCAAATGAATTAGGTGGAA 60.105 40.000 0.00 0.00 39.99 3.53
1750 5488 4.402155 GCATGTCCAAATGAATTAGGTGGA 59.598 41.667 0.00 0.00 36.02 4.02
1751 5489 4.441913 GGCATGTCCAAATGAATTAGGTGG 60.442 45.833 0.00 0.00 34.01 4.61
1794 5542 2.841215 CCACAACGGTTACTGGAAGAA 58.159 47.619 10.03 0.00 37.43 2.52
1809 5558 6.428083 TCAAGTATACTGGAAGAACCACAA 57.572 37.500 7.56 0.00 44.64 3.33
1816 5565 7.665559 AGCACAAATTTCAAGTATACTGGAAGA 59.334 33.333 19.68 12.81 37.24 2.87
1821 5570 6.380995 TGCAGCACAAATTTCAAGTATACTG 58.619 36.000 6.06 1.22 0.00 2.74
1877 5626 9.574458 CTCAATAGGATGGACAATATAAGTACG 57.426 37.037 0.00 0.00 0.00 3.67
1915 5664 8.261522 GGACCTCTGTCTATTCATTAAGAAAGT 58.738 37.037 0.00 0.00 41.47 2.66
1916 5665 8.482128 AGGACCTCTGTCTATTCATTAAGAAAG 58.518 37.037 0.00 0.00 41.47 2.62
1921 5670 5.663106 AGCAGGACCTCTGTCTATTCATTAA 59.337 40.000 0.00 0.00 45.08 1.40
1932 5681 0.398318 GAAACCAGCAGGACCTCTGT 59.602 55.000 0.35 5.70 45.08 3.41
1938 5687 0.034896 TTCCGAGAAACCAGCAGGAC 59.965 55.000 0.35 0.00 38.69 3.85
2018 5767 3.004734 CCACTGAACAAACACATTCCTCC 59.995 47.826 0.00 0.00 0.00 4.30
2019 5768 3.882888 TCCACTGAACAAACACATTCCTC 59.117 43.478 0.00 0.00 0.00 3.71
2021 5770 4.853924 ATCCACTGAACAAACACATTCC 57.146 40.909 0.00 0.00 0.00 3.01
2024 5773 6.480763 TGGTATATCCACTGAACAAACACAT 58.519 36.000 0.00 0.00 41.93 3.21
2027 5776 4.941263 GCTGGTATATCCACTGAACAAACA 59.059 41.667 0.00 0.00 41.93 2.83
2037 5786 6.288294 TGAATACACTTGCTGGTATATCCAC 58.712 40.000 0.00 0.00 41.93 4.02
2039 5788 7.445402 ACAATGAATACACTTGCTGGTATATCC 59.555 37.037 0.00 0.00 30.37 2.59
2044 5793 8.046708 AGAATACAATGAATACACTTGCTGGTA 58.953 33.333 0.00 0.00 0.00 3.25
2047 5796 8.206325 AGAGAATACAATGAATACACTTGCTG 57.794 34.615 0.00 0.00 0.00 4.41
2048 5797 8.798859 AAGAGAATACAATGAATACACTTGCT 57.201 30.769 0.00 0.00 0.00 3.91
2049 5798 9.495754 GAAAGAGAATACAATGAATACACTTGC 57.504 33.333 0.00 0.00 0.00 4.01
2054 5803 9.102757 GCAGAGAAAGAGAATACAATGAATACA 57.897 33.333 0.00 0.00 0.00 2.29
2055 5804 9.102757 TGCAGAGAAAGAGAATACAATGAATAC 57.897 33.333 0.00 0.00 0.00 1.89
2056 5805 9.842775 ATGCAGAGAAAGAGAATACAATGAATA 57.157 29.630 0.00 0.00 0.00 1.75
2057 5806 8.749026 ATGCAGAGAAAGAGAATACAATGAAT 57.251 30.769 0.00 0.00 0.00 2.57
2058 5807 7.825761 TGATGCAGAGAAAGAGAATACAATGAA 59.174 33.333 0.00 0.00 0.00 2.57
2059 5808 7.333323 TGATGCAGAGAAAGAGAATACAATGA 58.667 34.615 0.00 0.00 0.00 2.57
2060 5809 7.549615 TGATGCAGAGAAAGAGAATACAATG 57.450 36.000 0.00 0.00 0.00 2.82
2061 5810 7.828223 AGTTGATGCAGAGAAAGAGAATACAAT 59.172 33.333 0.00 0.00 0.00 2.71
2069 5818 8.509690 TCAAAATAAGTTGATGCAGAGAAAGAG 58.490 33.333 0.00 0.00 32.56 2.85
2137 6277 7.462331 CGAATCAACTACAATTAATCACGACGT 60.462 37.037 0.00 0.00 0.00 4.34
2139 6279 7.672738 ACGAATCAACTACAATTAATCACGAC 58.327 34.615 0.00 0.00 0.00 4.34
2156 6296 2.224523 ACAAGGAGAGCCAACGAATCAA 60.225 45.455 0.00 0.00 36.29 2.57
2186 6326 9.136323 ACTTTTTCCTGACAATCTTATGAAGTT 57.864 29.630 0.00 0.00 0.00 2.66
2198 6338 4.402155 AGCATTCACACTTTTTCCTGACAA 59.598 37.500 0.00 0.00 0.00 3.18
2199 6339 3.953612 AGCATTCACACTTTTTCCTGACA 59.046 39.130 0.00 0.00 0.00 3.58
2200 6340 4.574599 AGCATTCACACTTTTTCCTGAC 57.425 40.909 0.00 0.00 0.00 3.51
2202 6342 5.594926 AGAAAGCATTCACACTTTTTCCTG 58.405 37.500 4.27 0.00 36.28 3.86
2203 6343 5.859205 AGAAAGCATTCACACTTTTTCCT 57.141 34.783 4.27 0.00 36.28 3.36
2204 6344 6.503524 TGTAGAAAGCATTCACACTTTTTCC 58.496 36.000 4.27 0.00 36.28 3.13
2220 6363 7.064609 ACGTTCATATCACCATGTTGTAGAAAG 59.935 37.037 0.00 0.00 0.00 2.62
2268 6412 4.116747 ACTGATTAGAAGTCGCAAGGAG 57.883 45.455 0.00 0.00 38.47 3.69
2271 6415 5.093457 TCGTTACTGATTAGAAGTCGCAAG 58.907 41.667 0.00 0.00 0.00 4.01
2297 6441 9.575868 CTCTTATATTAGTTCACAGAGGGAGTA 57.424 37.037 0.00 0.00 0.00 2.59
2298 6442 8.062536 ACTCTTATATTAGTTCACAGAGGGAGT 58.937 37.037 0.00 0.00 32.21 3.85
2299 6443 8.356657 CACTCTTATATTAGTTCACAGAGGGAG 58.643 40.741 0.00 0.00 32.92 4.30
2300 6444 7.839705 ACACTCTTATATTAGTTCACAGAGGGA 59.160 37.037 2.59 0.00 34.50 4.20
2301 6445 8.012957 ACACTCTTATATTAGTTCACAGAGGG 57.987 38.462 0.00 0.00 36.55 4.30
2302 6446 9.877178 AAACACTCTTATATTAGTTCACAGAGG 57.123 33.333 0.00 0.00 32.21 3.69
2329 6473 9.733219 GCGTTTAGATCACTACTTTAGTAATCT 57.267 33.333 4.72 4.72 37.23 2.40
2330 6474 9.733219 AGCGTTTAGATCACTACTTTAGTAATC 57.267 33.333 0.00 0.00 37.23 1.75
2331 6475 9.733219 GAGCGTTTAGATCACTACTTTAGTAAT 57.267 33.333 0.00 0.00 37.23 1.89
2332 6476 8.954350 AGAGCGTTTAGATCACTACTTTAGTAA 58.046 33.333 0.00 0.00 37.82 2.24
2333 6477 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
2334 6478 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2335 6479 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
2347 6491 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2348 6492 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2349 6493 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2350 6494 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2351 6495 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2352 6496 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2353 6497 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2354 6498 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2355 6499 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2356 6500 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
2357 6501 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
2358 6502 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
2359 6503 9.646522 AAAGTACTCCCTCCGTAAACTAATATA 57.353 33.333 0.00 0.00 0.00 0.86
2360 6504 8.544687 AAAGTACTCCCTCCGTAAACTAATAT 57.455 34.615 0.00 0.00 0.00 1.28
2361 6505 7.961326 AAAGTACTCCCTCCGTAAACTAATA 57.039 36.000 0.00 0.00 0.00 0.98
2362 6506 6.864151 AAAGTACTCCCTCCGTAAACTAAT 57.136 37.500 0.00 0.00 0.00 1.73
2363 6507 7.961326 ATAAAGTACTCCCTCCGTAAACTAA 57.039 36.000 0.00 0.00 0.00 2.24
2364 6508 9.474313 TTTATAAAGTACTCCCTCCGTAAACTA 57.526 33.333 0.00 0.00 0.00 2.24
2365 6509 7.961326 TTATAAAGTACTCCCTCCGTAAACT 57.039 36.000 0.00 0.00 0.00 2.66
2366 6510 9.605275 AATTTATAAAGTACTCCCTCCGTAAAC 57.395 33.333 3.94 0.00 0.00 2.01
2370 6514 8.985922 AGTTAATTTATAAAGTACTCCCTCCGT 58.014 33.333 4.92 0.00 0.00 4.69
2371 6515 9.473640 GAGTTAATTTATAAAGTACTCCCTCCG 57.526 37.037 17.79 0.00 0.00 4.63
2427 6571 6.137794 TCGCCAAAAAGAATTGAACTAACA 57.862 33.333 0.00 0.00 31.84 2.41
2435 6579 7.290118 CAATTACCTTTCGCCAAAAAGAATTG 58.710 34.615 10.37 10.37 38.30 2.32
2495 6639 4.804868 TGGTTAGCACGGTATTAGTTCA 57.195 40.909 0.00 0.00 0.00 3.18
2521 6665 3.701542 CCTGCTCACTGGTTAGAGATGTA 59.298 47.826 0.00 0.00 33.74 2.29
2741 6885 7.518188 TCCATAAAAGGATTCTTACTGGATCC 58.482 38.462 4.20 4.20 33.66 3.36
2944 7091 5.792741 AGAGAAAGAATGAGACACTTCTGG 58.207 41.667 0.00 0.00 32.20 3.86
2955 7102 6.550938 TGAGGATGCTAAGAGAAAGAATGA 57.449 37.500 0.00 0.00 0.00 2.57
2975 7122 6.492007 AAGACAATGCTGATACTTGTTGAG 57.508 37.500 0.00 0.00 33.46 3.02
2977 7124 7.113965 GTCAAAAGACAATGCTGATACTTGTTG 59.886 37.037 0.00 0.00 33.46 3.33
2985 7132 2.095059 GCGGTCAAAAGACAATGCTGAT 60.095 45.455 0.00 0.00 0.00 2.90
3005 7152 1.923864 GACGAAGAAGCAGCTAAGAGC 59.076 52.381 0.00 0.00 42.84 4.09
3052 7199 2.196749 GCAGGTATGATGACACACTCG 58.803 52.381 0.00 0.00 0.00 4.18
3080 7227 5.346822 GCCAAGCATCTTATGTGTCTTTTTG 59.653 40.000 0.00 0.00 0.00 2.44
3113 7260 5.465532 TGCCTGAACAGATAAATTTTGCA 57.534 34.783 0.00 0.00 0.00 4.08
3167 7378 7.139392 GGGTGTTTGTGAGTTCTCTTATTTTC 58.861 38.462 1.53 0.00 0.00 2.29
3196 7407 0.618981 GAGTGGGTAAAGGGGGTCAG 59.381 60.000 0.00 0.00 0.00 3.51
3245 7456 2.160205 GGTAGTGTCCCTTTCCTTTGC 58.840 52.381 0.00 0.00 0.00 3.68
3281 7492 5.241506 CCTATTGGCTCTTCTCAACAAAACA 59.758 40.000 0.00 0.00 0.00 2.83
3334 7545 5.945191 TCAAACAAGACTGGCATCAATCATA 59.055 36.000 0.00 0.00 0.00 2.15
3335 7546 4.768448 TCAAACAAGACTGGCATCAATCAT 59.232 37.500 0.00 0.00 0.00 2.45
3394 7605 9.065798 TCTGTGAATTTATGAACAAACAGATGA 57.934 29.630 0.00 0.00 38.23 2.92
3416 7627 9.883142 CTATGGACTTAATCTTCTCTTTTCTGT 57.117 33.333 0.00 0.00 0.00 3.41
3462 7673 4.735578 GCAAGGCATGACATGGTAAGAATG 60.736 45.833 17.03 0.00 0.00 2.67
3737 7948 7.055378 TGGTAAACAAAACCTTTAGTAGCTCA 58.945 34.615 0.00 0.00 37.91 4.26
3777 7988 6.956299 AAGCATTTTGTTGAATATCACAGC 57.044 33.333 0.00 0.00 0.00 4.40
3796 8007 0.250234 CCGATCCAGAGGACAAAGCA 59.750 55.000 0.00 0.00 32.98 3.91
3822 8033 9.288576 CTGATATCTAAAGGCATTCCACAAATA 57.711 33.333 3.98 0.00 33.74 1.40
3834 8045 9.732130 AGAACAATATTCCTGATATCTAAAGGC 57.268 33.333 3.98 0.00 30.50 4.35
3907 8119 5.047235 ACTGATCTAGAACACCAGGTGTAAC 60.047 44.000 26.17 20.95 46.79 2.50
3941 8153 7.125792 ACCTTTCAAGAAGTTGAGACTTAGA 57.874 36.000 0.00 0.00 45.88 2.10
4033 8245 7.041107 TCATAAAGCACAATAAAATTCAGGGC 58.959 34.615 0.00 0.00 0.00 5.19
4147 8366 5.360591 AGACCTAGCACTTATATTGCACAC 58.639 41.667 9.00 0.00 42.83 3.82
4155 8374 4.537751 ACAGCAGAGACCTAGCACTTATA 58.462 43.478 0.00 0.00 0.00 0.98
4176 8395 7.491682 ACCATGACTTTGGCATCAAAATATAC 58.508 34.615 0.00 0.00 41.70 1.47
4187 8406 3.196469 TGTTTGAAACCATGACTTTGGCA 59.804 39.130 5.50 0.00 40.68 4.92
4214 8433 5.682943 TGTGTCACAAATAAGCAACTACC 57.317 39.130 2.31 0.00 0.00 3.18
4216 8435 7.230510 AGGAAATGTGTCACAAATAAGCAACTA 59.769 33.333 10.28 0.00 0.00 2.24
4349 8568 2.603560 GTCTATCAAGCGAAGTTTCCGG 59.396 50.000 0.00 0.00 0.00 5.14
4352 8571 3.619038 CCCAGTCTATCAAGCGAAGTTTC 59.381 47.826 0.00 0.00 0.00 2.78
4522 8741 3.055747 CAGGAAGGAGGGAGTACAACTTC 60.056 52.174 0.00 0.00 34.98 3.01
4539 8758 7.333423 CCATTTCTACGACAAGTAATTCAGGAA 59.667 37.037 0.00 0.00 34.45 3.36
4543 8762 7.822334 ACATCCATTTCTACGACAAGTAATTCA 59.178 33.333 0.00 0.00 34.45 2.57
4600 8829 4.748102 GCGGAATTATCTGTCGTGGAAATA 59.252 41.667 0.00 0.00 34.20 1.40
4613 8842 2.622064 ACCCTCTGTGCGGAATTATC 57.378 50.000 0.00 0.00 0.00 1.75
4685 8914 7.930865 TCAAAAGGGTTCAATCCAAATAAGTTG 59.069 33.333 0.00 0.00 36.94 3.16
4984 9296 2.544844 ATTTCCAGACGGAGGGAGTA 57.455 50.000 0.00 0.00 44.10 2.59
4985 9297 2.108970 GTATTTCCAGACGGAGGGAGT 58.891 52.381 0.00 0.00 44.10 3.85
4986 9298 2.389715 AGTATTTCCAGACGGAGGGAG 58.610 52.381 0.00 0.00 44.10 4.30
4987 9299 2.500098 CAAGTATTTCCAGACGGAGGGA 59.500 50.000 0.00 0.00 44.10 4.20
4988 9300 2.236395 ACAAGTATTTCCAGACGGAGGG 59.764 50.000 0.00 0.00 44.10 4.30
4989 9301 3.522553 GACAAGTATTTCCAGACGGAGG 58.477 50.000 0.00 0.00 44.10 4.30
4990 9302 3.179830 CGACAAGTATTTCCAGACGGAG 58.820 50.000 0.00 0.00 44.10 4.63
4991 9303 2.094390 CCGACAAGTATTTCCAGACGGA 60.094 50.000 0.00 0.00 40.16 4.69
4992 9304 2.094390 TCCGACAAGTATTTCCAGACGG 60.094 50.000 0.00 0.00 39.30 4.79
4993 9305 3.119602 TCTCCGACAAGTATTTCCAGACG 60.120 47.826 0.00 0.00 0.00 4.18
4994 9306 4.451629 TCTCCGACAAGTATTTCCAGAC 57.548 45.455 0.00 0.00 0.00 3.51
4995 9307 5.477607 TTTCTCCGACAAGTATTTCCAGA 57.522 39.130 0.00 0.00 0.00 3.86
4996 9308 5.447818 GCATTTCTCCGACAAGTATTTCCAG 60.448 44.000 0.00 0.00 0.00 3.86
4997 9309 4.394920 GCATTTCTCCGACAAGTATTTCCA 59.605 41.667 0.00 0.00 0.00 3.53
4998 9310 4.394920 TGCATTTCTCCGACAAGTATTTCC 59.605 41.667 0.00 0.00 0.00 3.13
4999 9311 5.545658 TGCATTTCTCCGACAAGTATTTC 57.454 39.130 0.00 0.00 0.00 2.17
5000 9312 7.624360 TTATGCATTTCTCCGACAAGTATTT 57.376 32.000 3.54 0.00 0.00 1.40
5001 9313 7.624360 TTTATGCATTTCTCCGACAAGTATT 57.376 32.000 3.54 0.00 0.00 1.89
5002 9314 7.624360 TTTTATGCATTTCTCCGACAAGTAT 57.376 32.000 3.54 0.00 0.00 2.12
5003 9315 7.441890 TTTTTATGCATTTCTCCGACAAGTA 57.558 32.000 3.54 0.00 0.00 2.24
5004 9316 5.957842 TTTTATGCATTTCTCCGACAAGT 57.042 34.783 3.54 0.00 0.00 3.16
5005 9317 6.254157 CCATTTTTATGCATTTCTCCGACAAG 59.746 38.462 3.54 0.00 0.00 3.16
5006 9318 6.071672 TCCATTTTTATGCATTTCTCCGACAA 60.072 34.615 3.54 0.00 0.00 3.18
5007 9319 5.417266 TCCATTTTTATGCATTTCTCCGACA 59.583 36.000 3.54 0.00 0.00 4.35
5008 9320 5.890334 TCCATTTTTATGCATTTCTCCGAC 58.110 37.500 3.54 0.00 0.00 4.79
5009 9321 6.096705 ACATCCATTTTTATGCATTTCTCCGA 59.903 34.615 3.54 0.00 0.00 4.55
5010 9322 6.275335 ACATCCATTTTTATGCATTTCTCCG 58.725 36.000 3.54 0.00 0.00 4.63
5011 9323 9.415544 GATACATCCATTTTTATGCATTTCTCC 57.584 33.333 3.54 0.00 0.00 3.71
5045 9357 8.871125 AGGAATGGATGTATCTAGACGTATTTT 58.129 33.333 0.00 0.00 0.00 1.82
5046 9358 8.423906 AGGAATGGATGTATCTAGACGTATTT 57.576 34.615 0.00 0.00 0.00 1.40
5047 9359 7.122948 GGAGGAATGGATGTATCTAGACGTATT 59.877 40.741 0.00 0.00 0.00 1.89
5048 9360 6.603997 GGAGGAATGGATGTATCTAGACGTAT 59.396 42.308 0.00 0.00 0.00 3.06
5049 9361 5.944599 GGAGGAATGGATGTATCTAGACGTA 59.055 44.000 0.00 0.00 0.00 3.57
5050 9362 4.767928 GGAGGAATGGATGTATCTAGACGT 59.232 45.833 0.00 0.00 0.00 4.34
5051 9363 4.142578 CGGAGGAATGGATGTATCTAGACG 60.143 50.000 0.00 0.00 0.00 4.18
5052 9364 5.010933 TCGGAGGAATGGATGTATCTAGAC 58.989 45.833 0.00 0.00 0.00 2.59
5053 9365 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
5054 9366 4.767409 TGTCGGAGGAATGGATGTATCTAG 59.233 45.833 0.00 0.00 0.00 2.43
5055 9367 4.736473 TGTCGGAGGAATGGATGTATCTA 58.264 43.478 0.00 0.00 0.00 1.98
5056 9368 3.576861 TGTCGGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 0.00 1.98
5057 9369 4.202264 ACTTGTCGGAGGAATGGATGTATC 60.202 45.833 0.00 0.00 0.00 2.24
5058 9370 3.711704 ACTTGTCGGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 0.00 2.29
5059 9371 3.104512 ACTTGTCGGAGGAATGGATGTA 58.895 45.455 0.00 0.00 0.00 2.29
5060 9372 1.909302 ACTTGTCGGAGGAATGGATGT 59.091 47.619 0.00 0.00 0.00 3.06
5061 9373 2.698855 ACTTGTCGGAGGAATGGATG 57.301 50.000 0.00 0.00 0.00 3.51
5062 9374 5.368989 GAAATACTTGTCGGAGGAATGGAT 58.631 41.667 0.00 0.00 0.00 3.41
5063 9375 4.383770 GGAAATACTTGTCGGAGGAATGGA 60.384 45.833 0.00 0.00 0.00 3.41
5064 9376 3.877508 GGAAATACTTGTCGGAGGAATGG 59.122 47.826 0.00 0.00 0.00 3.16
5065 9377 3.555956 CGGAAATACTTGTCGGAGGAATG 59.444 47.826 0.00 0.00 0.00 2.67
5066 9378 3.431766 CCGGAAATACTTGTCGGAGGAAT 60.432 47.826 0.00 0.00 42.94 3.01
5067 9379 2.093869 CCGGAAATACTTGTCGGAGGAA 60.094 50.000 0.00 0.00 42.94 3.36
5068 9380 1.479323 CCGGAAATACTTGTCGGAGGA 59.521 52.381 0.00 0.00 42.94 3.71
5069 9381 1.479323 TCCGGAAATACTTGTCGGAGG 59.521 52.381 0.00 0.00 43.84 4.30
5070 9382 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
5071 9383 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
5072 9384 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
5073 9385 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
5074 9386 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
5075 9387 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
5076 9388 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
5077 9389 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
5078 9390 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
5079 9391 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
5080 9392 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
5081 9393 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
5082 9394 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
5083 9395 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
5084 9396 0.846015 TAATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
5085 9397 1.920610 ATAATACTCCCTCCGTCCGG 58.079 55.000 0.00 0.00 0.00 5.14
5086 9398 2.889045 TGAATAATACTCCCTCCGTCCG 59.111 50.000 0.00 0.00 0.00 4.79
5087 9399 4.283722 ACATGAATAATACTCCCTCCGTCC 59.716 45.833 0.00 0.00 0.00 4.79
5088 9400 5.470047 ACATGAATAATACTCCCTCCGTC 57.530 43.478 0.00 0.00 0.00 4.79
5089 9401 5.888982 AACATGAATAATACTCCCTCCGT 57.111 39.130 0.00 0.00 0.00 4.69
5090 9402 5.869888 GCTAACATGAATAATACTCCCTCCG 59.130 44.000 0.00 0.00 0.00 4.63
5091 9403 6.769512 TGCTAACATGAATAATACTCCCTCC 58.230 40.000 0.00 0.00 0.00 4.30
5175 9487 8.294577 TGCTATGCTCAGATATTAAAAAGCATG 58.705 33.333 15.74 8.39 46.66 4.06
5338 9650 9.338968 ACACCATTAAGTCCAGGATACATATAT 57.661 33.333 0.00 0.00 41.41 0.86
5362 9674 6.153170 TCAGTTACGGACCTAATGTCAATACA 59.847 38.462 0.00 0.00 46.38 2.29
5496 9808 1.756498 ATGGGAGATGCCAGGATCAT 58.244 50.000 0.00 0.00 38.95 2.45
5501 9813 2.236644 CAGAGATATGGGAGATGCCAGG 59.763 54.545 0.00 0.00 38.95 4.45
5512 9824 6.865834 AGCCTTCTATTACCAGAGATATGG 57.134 41.667 0.00 0.00 46.47 2.74
5555 9867 3.511146 ACCATGGGTTGCATCACTAAAAG 59.489 43.478 18.09 0.00 27.29 2.27
5601 9913 5.912892 ACAGAAAACAGGTTTTGTAATGGG 58.087 37.500 14.31 2.09 42.26 4.00
5689 10001 9.877178 AGTAGGTCTTTCTTACAATACAATCTG 57.123 33.333 0.00 0.00 32.08 2.90
5725 10038 3.988379 TTGAGCAAACTGCCTTAACTG 57.012 42.857 0.00 0.00 46.52 3.16
5762 10075 2.041755 GTGGAAAGGAAGATGAGGGGTT 59.958 50.000 0.00 0.00 0.00 4.11
5803 10116 2.370189 GGCAGTCAGTCATAGCCCTAAT 59.630 50.000 0.00 0.00 39.42 1.73
5804 10117 1.762957 GGCAGTCAGTCATAGCCCTAA 59.237 52.381 0.00 0.00 39.42 2.69
5805 10118 1.414158 GGCAGTCAGTCATAGCCCTA 58.586 55.000 0.00 0.00 39.42 3.53
5806 10119 2.216148 GGCAGTCAGTCATAGCCCT 58.784 57.895 0.00 0.00 39.42 5.19
5807 10120 4.865865 GGCAGTCAGTCATAGCCC 57.134 61.111 0.00 0.00 39.42 5.19
5819 10134 2.990740 TAAATTTGGGAGTGGGCAGT 57.009 45.000 0.00 0.00 0.00 4.40
5820 10135 4.615588 TTTTAAATTTGGGAGTGGGCAG 57.384 40.909 0.00 0.00 0.00 4.85
5821 10136 4.805609 GCATTTTAAATTTGGGAGTGGGCA 60.806 41.667 0.00 0.00 0.00 5.36
5837 10152 3.585289 TGGGTCCTGTACAGAGCATTTTA 59.415 43.478 24.68 0.18 0.00 1.52
5870 10185 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
5871 10186 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
5872 10187 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
5873 10188 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
5874 10189 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
5875 10190 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
5876 10191 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
5877 10192 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
5881 10196 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
5882 10197 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
5883 10198 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
5884 10199 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
5885 10200 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
5886 10201 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
5887 10202 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
5888 10203 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
5889 10204 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
5890 10205 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
5891 10206 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
5892 10207 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
5893 10208 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
5894 10209 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
5895 10210 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
5896 10211 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
5915 10230 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
5916 10231 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
5917 10232 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
5918 10233 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
5919 10234 2.879026 GACTGTTTCCAGGACTTGAACC 59.121 50.000 0.00 0.00 43.36 3.62
5920 10235 3.809905 AGACTGTTTCCAGGACTTGAAC 58.190 45.455 0.00 0.00 43.36 3.18
5921 10236 3.711704 AGAGACTGTTTCCAGGACTTGAA 59.288 43.478 0.00 0.00 43.36 2.69
5923 10238 3.760580 AGAGACTGTTTCCAGGACTTG 57.239 47.619 0.00 0.00 43.36 3.16
5924 10239 4.654262 TGTAAGAGACTGTTTCCAGGACTT 59.346 41.667 0.00 0.00 43.36 3.01
5926 10241 4.281182 TCTGTAAGAGACTGTTTCCAGGAC 59.719 45.833 10.10 0.00 39.91 3.85
5927 10242 4.480115 TCTGTAAGAGACTGTTTCCAGGA 58.520 43.478 10.10 0.00 39.91 3.86
5928 10243 4.873746 TCTGTAAGAGACTGTTTCCAGG 57.126 45.455 10.10 0.00 39.91 4.45
5941 10256 6.655003 CAGCTTTTCCCTACATTTCTGTAAGA 59.345 38.462 0.00 0.00 44.68 2.10
5942 10257 6.623767 GCAGCTTTTCCCTACATTTCTGTAAG 60.624 42.308 0.00 0.00 37.41 2.34
5943 10258 5.183140 GCAGCTTTTCCCTACATTTCTGTAA 59.817 40.000 0.00 0.00 37.41 2.41
5944 10259 4.700213 GCAGCTTTTCCCTACATTTCTGTA 59.300 41.667 0.00 0.00 36.79 2.74
5945 10260 3.507622 GCAGCTTTTCCCTACATTTCTGT 59.492 43.478 0.00 0.00 39.49 3.41
5946 10261 3.426695 CGCAGCTTTTCCCTACATTTCTG 60.427 47.826 0.00 0.00 0.00 3.02
5947 10262 2.749621 CGCAGCTTTTCCCTACATTTCT 59.250 45.455 0.00 0.00 0.00 2.52
5948 10263 2.488153 ACGCAGCTTTTCCCTACATTTC 59.512 45.455 0.00 0.00 0.00 2.17
5949 10264 2.514803 ACGCAGCTTTTCCCTACATTT 58.485 42.857 0.00 0.00 0.00 2.32
5950 10265 2.200373 ACGCAGCTTTTCCCTACATT 57.800 45.000 0.00 0.00 0.00 2.71
5951 10266 2.027561 TGTACGCAGCTTTTCCCTACAT 60.028 45.455 0.00 0.00 0.00 2.29
5952 10267 1.345089 TGTACGCAGCTTTTCCCTACA 59.655 47.619 0.00 0.00 0.00 2.74
5953 10268 2.088950 TGTACGCAGCTTTTCCCTAC 57.911 50.000 0.00 0.00 0.00 3.18
5954 10269 2.843401 TTGTACGCAGCTTTTCCCTA 57.157 45.000 0.00 0.00 0.00 3.53
5955 10270 2.200373 ATTGTACGCAGCTTTTCCCT 57.800 45.000 0.00 0.00 0.00 4.20
5956 10271 2.354821 CCTATTGTACGCAGCTTTTCCC 59.645 50.000 0.00 0.00 0.00 3.97
5957 10272 2.223272 GCCTATTGTACGCAGCTTTTCC 60.223 50.000 0.00 0.00 0.00 3.13
5958 10273 2.223272 GGCCTATTGTACGCAGCTTTTC 60.223 50.000 0.00 0.00 0.00 2.29
5959 10274 1.743394 GGCCTATTGTACGCAGCTTTT 59.257 47.619 0.00 0.00 0.00 2.27
5960 10275 1.379527 GGCCTATTGTACGCAGCTTT 58.620 50.000 0.00 0.00 0.00 3.51
5961 10276 0.463833 GGGCCTATTGTACGCAGCTT 60.464 55.000 0.84 0.00 0.00 3.74
5962 10277 1.146263 GGGCCTATTGTACGCAGCT 59.854 57.895 0.84 0.00 0.00 4.24
5963 10278 0.391597 TAGGGCCTATTGTACGCAGC 59.608 55.000 9.81 0.00 0.00 5.25
5964 10279 2.102588 ACTTAGGGCCTATTGTACGCAG 59.897 50.000 15.37 8.55 0.00 5.18
5965 10280 2.112998 ACTTAGGGCCTATTGTACGCA 58.887 47.619 15.37 0.00 0.00 5.24
5966 10281 2.480845 CACTTAGGGCCTATTGTACGC 58.519 52.381 15.37 0.00 0.00 4.42
5967 10282 2.433239 ACCACTTAGGGCCTATTGTACG 59.567 50.000 15.37 11.64 43.89 3.67
5968 10283 4.069300 GACCACTTAGGGCCTATTGTAC 57.931 50.000 15.37 7.21 40.85 2.90
5978 10293 1.555533 GAAGGGTCTGACCACTTAGGG 59.444 57.143 26.94 0.00 41.02 3.53
5979 10294 1.555533 GGAAGGGTCTGACCACTTAGG 59.444 57.143 26.94 0.00 41.02 2.69
5980 10295 1.555533 GGGAAGGGTCTGACCACTTAG 59.444 57.143 26.94 0.00 41.02 2.18
5981 10296 1.652947 GGGAAGGGTCTGACCACTTA 58.347 55.000 26.94 0.00 41.02 2.24
5982 10297 1.134438 GGGGAAGGGTCTGACCACTT 61.134 60.000 26.94 24.37 41.02 3.16
5983 10298 1.539124 GGGGAAGGGTCTGACCACT 60.539 63.158 26.94 18.28 41.02 4.00
5984 10299 2.955881 CGGGGAAGGGTCTGACCAC 61.956 68.421 26.94 16.44 41.02 4.16
5985 10300 2.606519 CGGGGAAGGGTCTGACCA 60.607 66.667 26.94 0.00 41.02 4.02
5986 10301 3.400054 CCGGGGAAGGGTCTGACC 61.400 72.222 18.65 18.65 37.60 4.02
5987 10302 1.687297 GATCCGGGGAAGGGTCTGAC 61.687 65.000 0.00 0.00 38.37 3.51
5988 10303 1.382695 GATCCGGGGAAGGGTCTGA 60.383 63.158 0.00 0.00 38.37 3.27
5989 10304 2.444256 GGATCCGGGGAAGGGTCTG 61.444 68.421 0.00 0.00 41.15 3.51
5990 10305 2.040779 GGATCCGGGGAAGGGTCT 60.041 66.667 0.00 0.00 41.15 3.85
5991 10306 2.040779 AGGATCCGGGGAAGGGTC 60.041 66.667 5.98 0.00 40.66 4.46
5992 10307 2.366972 CAGGATCCGGGGAAGGGT 60.367 66.667 5.98 0.00 0.00 4.34
5993 10308 3.878667 GCAGGATCCGGGGAAGGG 61.879 72.222 14.13 0.00 0.00 3.95
5994 10309 4.241555 CGCAGGATCCGGGGAAGG 62.242 72.222 21.97 1.35 0.00 3.46
5995 10310 4.918201 GCGCAGGATCCGGGGAAG 62.918 72.222 28.85 10.09 0.00 3.46
6003 10318 4.838152 TCCCGCTTGCGCAGGATC 62.838 66.667 25.12 5.31 37.80 3.36
6004 10319 4.845580 CTCCCGCTTGCGCAGGAT 62.846 66.667 25.12 0.00 41.70 3.24
6007 10322 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
6010 10325 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
6011 10326 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
6012 10327 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
6013 10328 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
6019 10334 2.203070 CCCCGGTGCATGTAGCTC 60.203 66.667 11.25 0.00 45.94 4.09
6020 10335 3.009115 ACCCCGGTGCATGTAGCT 61.009 61.111 11.25 0.00 45.94 3.32
6021 10336 2.513897 GACCCCGGTGCATGTAGC 60.514 66.667 0.00 2.56 45.96 3.58
6022 10337 2.189521 GGACCCCGGTGCATGTAG 59.810 66.667 0.00 0.00 36.45 2.74
6023 10338 3.776781 CGGACCCCGGTGCATGTA 61.777 66.667 0.00 0.00 44.15 2.29
6040 10355 1.378646 GTCCTGTAAAGGGCAGCCC 60.379 63.158 24.90 24.90 45.90 5.19
6041 10356 0.960861 GTGTCCTGTAAAGGGCAGCC 60.961 60.000 6.46 1.26 45.15 4.85
6042 10357 0.250727 TGTGTCCTGTAAAGGGCAGC 60.251 55.000 6.46 2.84 45.15 5.25
6043 10358 2.270352 TTGTGTCCTGTAAAGGGCAG 57.730 50.000 6.46 0.00 45.15 4.85
6044 10359 2.969821 ATTGTGTCCTGTAAAGGGCA 57.030 45.000 0.68 0.68 41.92 5.36
6045 10360 3.860754 GCAAATTGTGTCCTGTAAAGGGC 60.861 47.826 0.00 0.00 0.00 5.19
6046 10361 3.573967 AGCAAATTGTGTCCTGTAAAGGG 59.426 43.478 0.00 0.00 0.00 3.95
6047 10362 4.037923 ACAGCAAATTGTGTCCTGTAAAGG 59.962 41.667 0.00 0.00 0.00 3.11
6048 10363 5.186996 ACAGCAAATTGTGTCCTGTAAAG 57.813 39.130 2.85 0.00 0.00 1.85
6049 10364 5.126222 TCAACAGCAAATTGTGTCCTGTAAA 59.874 36.000 4.81 0.00 0.00 2.01
6050 10365 4.642437 TCAACAGCAAATTGTGTCCTGTAA 59.358 37.500 4.81 0.00 0.00 2.41
6051 10366 4.203226 TCAACAGCAAATTGTGTCCTGTA 58.797 39.130 4.81 0.00 0.00 2.74
6052 10367 3.023119 TCAACAGCAAATTGTGTCCTGT 58.977 40.909 0.00 0.00 0.00 4.00
6053 10368 3.316029 TCTCAACAGCAAATTGTGTCCTG 59.684 43.478 0.00 0.00 0.00 3.86
6054 10369 3.554934 TCTCAACAGCAAATTGTGTCCT 58.445 40.909 0.00 0.00 0.00 3.85
6055 10370 3.988379 TCTCAACAGCAAATTGTGTCC 57.012 42.857 0.00 0.00 0.00 4.02
6056 10371 4.232221 CCATCTCAACAGCAAATTGTGTC 58.768 43.478 0.00 0.00 0.00 3.67
6057 10372 3.553508 GCCATCTCAACAGCAAATTGTGT 60.554 43.478 0.00 0.00 0.00 3.72
6058 10373 2.991190 GCCATCTCAACAGCAAATTGTG 59.009 45.455 0.00 0.00 0.00 3.33
6059 10374 2.629137 TGCCATCTCAACAGCAAATTGT 59.371 40.909 0.00 0.00 30.97 2.71
6060 10375 2.991190 GTGCCATCTCAACAGCAAATTG 59.009 45.455 0.00 0.00 36.91 2.32
6061 10376 2.895404 AGTGCCATCTCAACAGCAAATT 59.105 40.909 0.00 0.00 36.91 1.82
6062 10377 2.522185 AGTGCCATCTCAACAGCAAAT 58.478 42.857 0.00 0.00 36.91 2.32
6063 10378 1.985473 AGTGCCATCTCAACAGCAAA 58.015 45.000 0.00 0.00 36.91 3.68
6064 10379 2.857186 TAGTGCCATCTCAACAGCAA 57.143 45.000 0.00 0.00 36.91 3.91
6065 10380 2.813754 GTTTAGTGCCATCTCAACAGCA 59.186 45.455 0.00 0.00 0.00 4.41
6066 10381 2.162408 GGTTTAGTGCCATCTCAACAGC 59.838 50.000 0.00 0.00 0.00 4.40
6107 10422 8.202137 TCCTTAGGACAAATAATAGCACTGTAC 58.798 37.037 0.00 0.00 0.00 2.90
6108 10423 8.313944 TCCTTAGGACAAATAATAGCACTGTA 57.686 34.615 0.00 0.00 0.00 2.74
6109 10424 7.195374 TCCTTAGGACAAATAATAGCACTGT 57.805 36.000 0.00 0.00 0.00 3.55
6110 10425 6.203723 GCTCCTTAGGACAAATAATAGCACTG 59.796 42.308 0.00 0.00 0.00 3.66
6112 10427 6.292150 AGCTCCTTAGGACAAATAATAGCAC 58.708 40.000 0.00 0.00 0.00 4.40
6113 10428 6.500589 AGCTCCTTAGGACAAATAATAGCA 57.499 37.500 0.00 0.00 0.00 3.49
6114 10429 7.643579 CAAAGCTCCTTAGGACAAATAATAGC 58.356 38.462 0.00 0.00 0.00 2.97
6115 10430 7.255277 GGCAAAGCTCCTTAGGACAAATAATAG 60.255 40.741 0.00 0.00 0.00 1.73
6176 11061 8.650143 TTAGCCTAGACTCAATGGAAAAATTT 57.350 30.769 0.00 0.00 0.00 1.82
6208 11095 9.918630 ATCAATCCTTCACATTTCAAAGTTAAG 57.081 29.630 0.00 0.00 0.00 1.85
6211 11098 7.874528 GGAATCAATCCTTCACATTTCAAAGTT 59.125 33.333 0.00 0.00 45.56 2.66
6394 11308 3.494398 GCTGTCTGTTCCAAGTACCTGAA 60.494 47.826 0.00 0.00 0.00 3.02
6617 11531 3.305676 CGGGAGATACTAGATGCTGGTTG 60.306 52.174 0.00 0.00 0.00 3.77
6682 11596 1.674221 GCAGTCAAGCGGAGAACTCAT 60.674 52.381 4.23 0.00 0.00 2.90
6692 11606 2.905959 TGAAATCATGCAGTCAAGCG 57.094 45.000 0.00 0.00 37.31 4.68
6804 11718 5.647225 TGAACTGTAACAAAGTTTACCGGTT 59.353 36.000 15.04 0.00 37.98 4.44
6809 11723 7.678226 TCGTCTTGAACTGTAACAAAGTTTAC 58.322 34.615 0.00 0.00 37.98 2.01
6884 11798 2.102757 TGGTCAAAAGCATGCAACATGT 59.897 40.909 21.98 0.00 0.00 3.21
6893 11834 5.477984 ACACTCAACATATGGTCAAAAGCAT 59.522 36.000 7.80 0.00 45.31 3.79
6913 11854 4.718961 ACTCAAAACAGATAGGCAACACT 58.281 39.130 0.00 0.00 41.41 3.55
6914 11855 5.438761 AACTCAAAACAGATAGGCAACAC 57.561 39.130 0.00 0.00 41.41 3.32
6917 11858 4.724399 TGGAACTCAAAACAGATAGGCAA 58.276 39.130 0.00 0.00 0.00 4.52
6918 11859 4.365514 TGGAACTCAAAACAGATAGGCA 57.634 40.909 0.00 0.00 0.00 4.75
6919 11860 5.904362 ATTGGAACTCAAAACAGATAGGC 57.096 39.130 0.00 0.00 39.05 3.93
6960 11937 5.305585 TCAGTGGTCAGTTATTGAACCTTC 58.694 41.667 0.00 0.00 43.20 3.46
7157 12161 1.089920 GTCGTAGGACGGCTAGTTGA 58.910 55.000 0.00 0.00 43.82 3.18
7218 12222 8.347035 GTTTACAAATACAAGGTTACAAGCTCA 58.653 33.333 0.00 0.00 35.34 4.26
7252 12256 8.565416 CACCATCAGTCGAGTATAAACAGTATA 58.435 37.037 0.00 0.00 0.00 1.47
7254 12258 6.183360 CCACCATCAGTCGAGTATAAACAGTA 60.183 42.308 0.00 0.00 0.00 2.74
7268 12275 4.012374 ACATTCATCAACCACCATCAGTC 58.988 43.478 0.00 0.00 0.00 3.51
7270 12277 3.129813 CCACATTCATCAACCACCATCAG 59.870 47.826 0.00 0.00 0.00 2.90
7275 12282 0.171007 CGCCACATTCATCAACCACC 59.829 55.000 0.00 0.00 0.00 4.61
7367 12374 5.869753 ACATTTCACTGATGCAACTCTAC 57.130 39.130 0.00 0.00 0.00 2.59
7378 12385 8.865090 ACAAAAATAACCCATACATTTCACTGA 58.135 29.630 0.00 0.00 0.00 3.41
7403 12410 8.527810 TCAAAAACCATACAGATTAATCCCAAC 58.472 33.333 11.92 0.00 0.00 3.77
7477 12520 4.646492 AGGCACAACTCAGAGAAATTTTGT 59.354 37.500 3.79 0.78 0.00 2.83
7513 12556 0.606604 AGTGCATACGGGTTTCTCGT 59.393 50.000 0.00 0.00 43.64 4.18
7517 12560 5.616488 TTTTCTAAGTGCATACGGGTTTC 57.384 39.130 0.00 0.00 0.00 2.78
7591 12634 3.118149 TGCCTCATTATCACTCTGCACAT 60.118 43.478 0.00 0.00 0.00 3.21
7605 12648 1.742761 CTGTTCCGTGATGCCTCATT 58.257 50.000 0.00 0.00 32.98 2.57
7611 12654 1.230635 ACTGTGCTGTTCCGTGATGC 61.231 55.000 0.00 0.00 0.00 3.91
7629 12672 4.635765 TGGCAGTACAGCAAAGATATGAAC 59.364 41.667 12.66 0.00 35.83 3.18
7663 12709 0.753262 GAGGTGGTACCATCGCAGAT 59.247 55.000 22.56 3.66 41.95 2.90
7664 12710 0.324368 AGAGGTGGTACCATCGCAGA 60.324 55.000 27.91 0.00 41.95 4.26
7665 12711 0.179100 CAGAGGTGGTACCATCGCAG 60.179 60.000 27.91 18.11 41.95 5.18
7667 12713 0.249398 AACAGAGGTGGTACCATCGC 59.751 55.000 20.29 20.29 41.95 4.58
7668 12714 1.825474 AGAACAGAGGTGGTACCATCG 59.175 52.381 19.72 7.47 41.95 3.84
7669 12715 3.983044 AAGAACAGAGGTGGTACCATC 57.017 47.619 19.72 18.87 41.95 3.51
7670 12716 4.426704 AGTAAGAACAGAGGTGGTACCAT 58.573 43.478 19.72 1.90 41.95 3.55
7671 12717 3.853207 AGTAAGAACAGAGGTGGTACCA 58.147 45.455 11.60 11.60 41.95 3.25
7672 12718 5.990120 TTAGTAAGAACAGAGGTGGTACC 57.010 43.478 4.43 4.43 38.99 3.34
7673 12719 7.609056 TGATTTAGTAAGAACAGAGGTGGTAC 58.391 38.462 0.00 0.00 0.00 3.34
7674 12720 7.786046 TGATTTAGTAAGAACAGAGGTGGTA 57.214 36.000 0.00 0.00 0.00 3.25
7675 12721 6.681729 TGATTTAGTAAGAACAGAGGTGGT 57.318 37.500 0.00 0.00 0.00 4.16
7676 12722 7.444183 TGTTTGATTTAGTAAGAACAGAGGTGG 59.556 37.037 0.00 0.00 0.00 4.61
7677 12723 8.378172 TGTTTGATTTAGTAAGAACAGAGGTG 57.622 34.615 0.00 0.00 0.00 4.00
7722 12769 8.992073 GGAGCATGTTTTTCTACAAATTTGATT 58.008 29.630 24.64 5.87 0.00 2.57
7744 12791 5.649831 ACACTTATTTTGGATCAGAAGGAGC 59.350 40.000 0.00 0.00 0.00 4.70
7749 12796 6.072728 CCAACGACACTTATTTTGGATCAGAA 60.073 38.462 0.00 0.00 39.33 3.02
7767 12814 7.588854 GTCCTAATTTGAACTAAAACCAACGAC 59.411 37.037 0.00 0.00 0.00 4.34
7884 13028 9.601217 AAGTATACCTGAACTTATAGCTTTGTG 57.399 33.333 0.00 0.00 34.23 3.33
7908 13052 6.482308 TCTTTTCTACTTCTTCGGTTCCAAAG 59.518 38.462 0.00 0.00 0.00 2.77
7917 13061 9.796120 ATGTATCTCTTCTTTTCTACTTCTTCG 57.204 33.333 0.00 0.00 0.00 3.79
7920 13064 7.984617 GCCATGTATCTCTTCTTTTCTACTTCT 59.015 37.037 0.00 0.00 0.00 2.85
7945 13089 0.255890 TCTAATCTTGGTGGCTGGGC 59.744 55.000 0.00 0.00 0.00 5.36
7973 13117 6.149973 CAGTTTCCATCTGCTAATTTGACAGA 59.850 38.462 13.13 13.13 44.06 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.