Multiple sequence alignment - TraesCS5D01G406700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G406700 chr5D 100.000 4232 0 0 1 4232 472281237 472285468 0.000000e+00 7816.0
1 TraesCS5D01G406700 chr5D 96.034 353 11 2 209 560 478444474 478444124 4.750000e-159 571.0
2 TraesCS5D01G406700 chr5D 88.372 172 8 2 558 728 478443562 478443402 3.340000e-46 196.0
3 TraesCS5D01G406700 chr5A 94.826 3363 151 8 889 4232 591486338 591489696 0.000000e+00 5225.0
4 TraesCS5D01G406700 chr5A 95.238 42 2 0 32 73 591481697 591481738 2.730000e-07 67.6
5 TraesCS5D01G406700 chr5A 96.970 33 1 0 698 730 138886194 138886162 5.910000e-04 56.5
6 TraesCS5D01G406700 chr5B 92.367 2725 139 29 768 3472 578600300 578602975 0.000000e+00 3816.0
7 TraesCS5D01G406700 chr5B 85.380 684 87 11 3458 4134 578603741 578604418 0.000000e+00 697.0
8 TraesCS5D01G406700 chr7D 95.238 336 13 2 226 560 531829523 531829856 2.900000e-146 529.0
9 TraesCS5D01G406700 chr7D 88.372 172 7 2 558 728 531830300 531830459 1.200000e-45 195.0
10 TraesCS5D01G406700 chr2B 79.737 533 90 10 212 728 142392170 142392700 1.860000e-98 370.0
11 TraesCS5D01G406700 chr3A 85.000 60 9 0 671 730 294482905 294482964 1.270000e-05 62.1
12 TraesCS5D01G406700 chr3A 100.000 33 0 0 698 730 548147804 548147772 1.270000e-05 62.1
13 TraesCS5D01G406700 chr3A 83.333 60 10 0 671 730 113559287 113559346 5.910000e-04 56.5
14 TraesCS5D01G406700 chr3A 96.970 33 1 0 698 730 537906916 537906884 5.910000e-04 56.5
15 TraesCS5D01G406700 chr4A 96.970 33 1 0 698 730 21689022 21688990 5.910000e-04 56.5
16 TraesCS5D01G406700 chr1A 96.970 33 1 0 698 730 566931705 566931673 5.910000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G406700 chr5D 472281237 472285468 4231 False 7816.0 7816 100.0000 1 4232 1 chr5D.!!$F1 4231
1 TraesCS5D01G406700 chr5D 478443402 478444474 1072 True 383.5 571 92.2030 209 728 2 chr5D.!!$R1 519
2 TraesCS5D01G406700 chr5A 591486338 591489696 3358 False 5225.0 5225 94.8260 889 4232 1 chr5A.!!$F2 3343
3 TraesCS5D01G406700 chr5B 578600300 578604418 4118 False 2256.5 3816 88.8735 768 4134 2 chr5B.!!$F1 3366
4 TraesCS5D01G406700 chr7D 531829523 531830459 936 False 362.0 529 91.8050 226 728 2 chr7D.!!$F1 502
5 TraesCS5D01G406700 chr2B 142392170 142392700 530 False 370.0 370 79.7370 212 728 1 chr2B.!!$F1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
877 1643 0.179108 GCCCACACTCCAGTACGATC 60.179 60.0 0.0 0.0 0.0 3.69 F
1841 2635 0.623723 TCCTGGGGTAATGCACTTCC 59.376 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2077 2871 0.523968 CAAACAATCGCCGCCTCATG 60.524 55.000 0.0 0.0 0.0 3.07 R
3584 5166 1.746220 ACTGTCCACGCATCTAGAGAC 59.254 52.381 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.758755 TTCTACCTATAGCCTCGTCGA 57.241 47.619 0.00 0.00 0.00 4.20
22 23 3.977134 TCTACCTATAGCCTCGTCGAT 57.023 47.619 0.00 0.00 0.00 3.59
23 24 3.597255 TCTACCTATAGCCTCGTCGATG 58.403 50.000 0.00 0.00 0.00 3.84
24 25 2.273538 ACCTATAGCCTCGTCGATGT 57.726 50.000 4.21 0.00 0.00 3.06
25 26 2.152830 ACCTATAGCCTCGTCGATGTC 58.847 52.381 4.21 0.00 0.00 3.06
26 27 2.224572 ACCTATAGCCTCGTCGATGTCT 60.225 50.000 4.21 3.64 0.00 3.41
27 28 2.417239 CCTATAGCCTCGTCGATGTCTC 59.583 54.545 4.21 0.00 0.00 3.36
28 29 2.264005 ATAGCCTCGTCGATGTCTCT 57.736 50.000 4.21 2.97 0.00 3.10
29 30 1.584175 TAGCCTCGTCGATGTCTCTC 58.416 55.000 4.21 0.00 0.00 3.20
30 31 1.098712 AGCCTCGTCGATGTCTCTCC 61.099 60.000 4.21 0.00 0.00 3.71
31 32 1.377366 GCCTCGTCGATGTCTCTCCA 61.377 60.000 4.21 0.00 0.00 3.86
32 33 1.095600 CCTCGTCGATGTCTCTCCAA 58.904 55.000 4.21 0.00 0.00 3.53
33 34 1.472878 CCTCGTCGATGTCTCTCCAAA 59.527 52.381 4.21 0.00 0.00 3.28
34 35 2.099921 CCTCGTCGATGTCTCTCCAAAT 59.900 50.000 4.21 0.00 0.00 2.32
35 36 3.315470 CCTCGTCGATGTCTCTCCAAATA 59.685 47.826 4.21 0.00 0.00 1.40
36 37 4.022762 CCTCGTCGATGTCTCTCCAAATAT 60.023 45.833 4.21 0.00 0.00 1.28
37 38 5.109662 TCGTCGATGTCTCTCCAAATATC 57.890 43.478 4.21 0.00 0.00 1.63
38 39 4.578928 TCGTCGATGTCTCTCCAAATATCA 59.421 41.667 4.21 0.00 0.00 2.15
39 40 5.067283 TCGTCGATGTCTCTCCAAATATCAA 59.933 40.000 4.21 0.00 0.00 2.57
40 41 5.174035 CGTCGATGTCTCTCCAAATATCAAC 59.826 44.000 0.00 0.00 0.00 3.18
41 42 6.042777 GTCGATGTCTCTCCAAATATCAACA 58.957 40.000 0.00 0.00 0.00 3.33
42 43 6.535150 GTCGATGTCTCTCCAAATATCAACAA 59.465 38.462 0.00 0.00 0.00 2.83
43 44 6.758416 TCGATGTCTCTCCAAATATCAACAAG 59.242 38.462 0.00 0.00 0.00 3.16
44 45 6.758416 CGATGTCTCTCCAAATATCAACAAGA 59.242 38.462 0.00 0.00 0.00 3.02
45 46 7.278646 CGATGTCTCTCCAAATATCAACAAGAA 59.721 37.037 0.00 0.00 0.00 2.52
46 47 9.118300 GATGTCTCTCCAAATATCAACAAGAAT 57.882 33.333 0.00 0.00 0.00 2.40
47 48 8.498054 TGTCTCTCCAAATATCAACAAGAATC 57.502 34.615 0.00 0.00 0.00 2.52
48 49 7.554118 TGTCTCTCCAAATATCAACAAGAATCC 59.446 37.037 0.00 0.00 0.00 3.01
49 50 7.772757 GTCTCTCCAAATATCAACAAGAATCCT 59.227 37.037 0.00 0.00 0.00 3.24
50 51 8.331740 TCTCTCCAAATATCAACAAGAATCCTT 58.668 33.333 0.00 0.00 0.00 3.36
60 61 3.515330 CAAGAATCCTTGGCATGTTCC 57.485 47.619 0.00 0.00 44.58 3.62
61 62 1.755179 AGAATCCTTGGCATGTTCCG 58.245 50.000 0.00 0.00 0.00 4.30
62 63 1.004745 AGAATCCTTGGCATGTTCCGT 59.995 47.619 0.00 0.00 0.00 4.69
63 64 1.401905 GAATCCTTGGCATGTTCCGTC 59.598 52.381 0.00 0.00 0.00 4.79
64 65 0.744414 ATCCTTGGCATGTTCCGTCG 60.744 55.000 0.00 0.00 0.00 5.12
65 66 1.375396 CCTTGGCATGTTCCGTCGA 60.375 57.895 0.00 0.00 0.00 4.20
66 67 0.744414 CCTTGGCATGTTCCGTCGAT 60.744 55.000 0.00 0.00 0.00 3.59
67 68 1.086696 CTTGGCATGTTCCGTCGATT 58.913 50.000 0.00 0.00 0.00 3.34
68 69 2.276201 CTTGGCATGTTCCGTCGATTA 58.724 47.619 0.00 0.00 0.00 1.75
69 70 2.613026 TGGCATGTTCCGTCGATTAT 57.387 45.000 0.00 0.00 0.00 1.28
70 71 3.737032 TGGCATGTTCCGTCGATTATA 57.263 42.857 0.00 0.00 0.00 0.98
71 72 3.386486 TGGCATGTTCCGTCGATTATAC 58.614 45.455 0.00 0.00 0.00 1.47
72 73 3.069016 TGGCATGTTCCGTCGATTATACT 59.931 43.478 0.00 0.00 0.00 2.12
73 74 3.673809 GGCATGTTCCGTCGATTATACTC 59.326 47.826 0.00 0.00 0.00 2.59
74 75 3.673809 GCATGTTCCGTCGATTATACTCC 59.326 47.826 0.00 0.00 0.00 3.85
75 76 3.996150 TGTTCCGTCGATTATACTCCC 57.004 47.619 0.00 0.00 0.00 4.30
76 77 3.559069 TGTTCCGTCGATTATACTCCCT 58.441 45.455 0.00 0.00 0.00 4.20
77 78 4.717877 TGTTCCGTCGATTATACTCCCTA 58.282 43.478 0.00 0.00 0.00 3.53
78 79 4.516698 TGTTCCGTCGATTATACTCCCTAC 59.483 45.833 0.00 0.00 0.00 3.18
79 80 4.630644 TCCGTCGATTATACTCCCTACT 57.369 45.455 0.00 0.00 0.00 2.57
80 81 4.978099 TCCGTCGATTATACTCCCTACTT 58.022 43.478 0.00 0.00 0.00 2.24
81 82 6.114187 TCCGTCGATTATACTCCCTACTTA 57.886 41.667 0.00 0.00 0.00 2.24
82 83 6.533730 TCCGTCGATTATACTCCCTACTTAA 58.466 40.000 0.00 0.00 0.00 1.85
83 84 7.170965 TCCGTCGATTATACTCCCTACTTAAT 58.829 38.462 0.00 0.00 0.00 1.40
84 85 7.667219 TCCGTCGATTATACTCCCTACTTAATT 59.333 37.037 0.00 0.00 0.00 1.40
85 86 8.950210 CCGTCGATTATACTCCCTACTTAATTA 58.050 37.037 0.00 0.00 0.00 1.40
86 87 9.985318 CGTCGATTATACTCCCTACTTAATTAG 57.015 37.037 0.00 0.00 0.00 1.73
109 110 9.690913 TTAGTAGTACTACCATACACATGAACT 57.309 33.333 25.97 9.44 36.75 3.01
110 111 8.223177 AGTAGTACTACCATACACATGAACTC 57.777 38.462 25.97 0.00 36.75 3.01
111 112 7.832685 AGTAGTACTACCATACACATGAACTCA 59.167 37.037 25.97 0.00 36.75 3.41
112 113 6.864342 AGTACTACCATACACATGAACTCAC 58.136 40.000 0.00 0.00 33.67 3.51
113 114 5.738619 ACTACCATACACATGAACTCACA 57.261 39.130 0.00 0.00 33.67 3.58
114 115 5.479306 ACTACCATACACATGAACTCACAC 58.521 41.667 0.00 0.00 33.67 3.82
115 116 3.325870 ACCATACACATGAACTCACACG 58.674 45.455 0.00 0.00 33.67 4.49
116 117 3.244078 ACCATACACATGAACTCACACGT 60.244 43.478 0.00 0.00 33.67 4.49
117 118 3.367932 CCATACACATGAACTCACACGTC 59.632 47.826 0.00 0.00 33.67 4.34
118 119 1.487482 ACACATGAACTCACACGTCG 58.513 50.000 0.00 0.00 0.00 5.12
119 120 1.202371 ACACATGAACTCACACGTCGT 60.202 47.619 0.00 0.00 0.00 4.34
120 121 1.452025 CACATGAACTCACACGTCGTC 59.548 52.381 0.00 0.00 0.00 4.20
121 122 1.337071 ACATGAACTCACACGTCGTCT 59.663 47.619 0.00 0.00 0.00 4.18
122 123 2.551032 ACATGAACTCACACGTCGTCTA 59.449 45.455 0.00 0.00 0.00 2.59
123 124 3.004002 ACATGAACTCACACGTCGTCTAA 59.996 43.478 0.00 0.00 0.00 2.10
124 125 3.909776 TGAACTCACACGTCGTCTAAT 57.090 42.857 0.00 0.00 0.00 1.73
125 126 5.106436 ACATGAACTCACACGTCGTCTAATA 60.106 40.000 0.00 0.00 0.00 0.98
126 127 5.361135 TGAACTCACACGTCGTCTAATAA 57.639 39.130 0.00 0.00 0.00 1.40
127 128 5.761003 TGAACTCACACGTCGTCTAATAAA 58.239 37.500 0.00 0.00 0.00 1.40
128 129 5.854866 TGAACTCACACGTCGTCTAATAAAG 59.145 40.000 0.00 0.00 0.00 1.85
129 130 5.618056 ACTCACACGTCGTCTAATAAAGA 57.382 39.130 0.00 0.00 0.00 2.52
130 131 6.192234 ACTCACACGTCGTCTAATAAAGAT 57.808 37.500 0.00 0.00 36.36 2.40
131 132 6.256686 ACTCACACGTCGTCTAATAAAGATC 58.743 40.000 0.00 0.00 36.36 2.75
132 133 6.128090 ACTCACACGTCGTCTAATAAAGATCA 60.128 38.462 0.00 0.00 36.36 2.92
133 134 6.255950 TCACACGTCGTCTAATAAAGATCAG 58.744 40.000 0.00 0.00 36.36 2.90
134 135 6.093082 TCACACGTCGTCTAATAAAGATCAGA 59.907 38.462 0.00 0.00 36.36 3.27
135 136 6.412362 CACACGTCGTCTAATAAAGATCAGAG 59.588 42.308 0.00 0.00 36.36 3.35
136 137 6.093771 ACACGTCGTCTAATAAAGATCAGAGT 59.906 38.462 0.00 0.00 36.36 3.24
137 138 6.629649 CACGTCGTCTAATAAAGATCAGAGTC 59.370 42.308 0.00 0.00 36.36 3.36
138 139 5.841811 CGTCGTCTAATAAAGATCAGAGTCG 59.158 44.000 0.00 0.00 36.36 4.18
139 140 6.509837 CGTCGTCTAATAAAGATCAGAGTCGT 60.510 42.308 0.00 0.00 36.36 4.34
140 141 6.847289 GTCGTCTAATAAAGATCAGAGTCGTC 59.153 42.308 0.00 0.00 36.36 4.20
141 142 6.537660 TCGTCTAATAAAGATCAGAGTCGTCA 59.462 38.462 0.00 0.00 36.36 4.35
142 143 7.226918 TCGTCTAATAAAGATCAGAGTCGTCAT 59.773 37.037 0.00 0.00 36.36 3.06
143 144 8.496751 CGTCTAATAAAGATCAGAGTCGTCATA 58.503 37.037 0.00 0.00 36.36 2.15
144 145 9.820229 GTCTAATAAAGATCAGAGTCGTCATAG 57.180 37.037 0.00 0.00 36.36 2.23
145 146 9.004717 TCTAATAAAGATCAGAGTCGTCATAGG 57.995 37.037 0.00 0.00 0.00 2.57
146 147 7.589958 AATAAAGATCAGAGTCGTCATAGGT 57.410 36.000 0.00 0.00 0.00 3.08
147 148 4.909696 AAGATCAGAGTCGTCATAGGTG 57.090 45.455 0.00 0.00 0.00 4.00
148 149 3.892284 AGATCAGAGTCGTCATAGGTGT 58.108 45.455 0.00 0.00 0.00 4.16
149 150 3.880490 AGATCAGAGTCGTCATAGGTGTC 59.120 47.826 0.00 0.00 0.00 3.67
150 151 3.067684 TCAGAGTCGTCATAGGTGTCA 57.932 47.619 0.00 0.00 0.00 3.58
151 152 2.747989 TCAGAGTCGTCATAGGTGTCAC 59.252 50.000 0.00 0.00 0.00 3.67
152 153 2.750166 CAGAGTCGTCATAGGTGTCACT 59.250 50.000 2.35 0.00 0.00 3.41
153 154 3.939592 CAGAGTCGTCATAGGTGTCACTA 59.060 47.826 2.35 0.00 0.00 2.74
154 155 4.395231 CAGAGTCGTCATAGGTGTCACTAA 59.605 45.833 2.35 0.00 0.00 2.24
155 156 4.395542 AGAGTCGTCATAGGTGTCACTAAC 59.604 45.833 2.35 0.00 0.00 2.34
156 157 4.333690 AGTCGTCATAGGTGTCACTAACT 58.666 43.478 2.35 0.00 0.00 2.24
157 158 4.765856 AGTCGTCATAGGTGTCACTAACTT 59.234 41.667 2.35 0.00 0.00 2.66
158 159 5.094134 GTCGTCATAGGTGTCACTAACTTC 58.906 45.833 2.35 0.00 0.00 3.01
159 160 5.008331 TCGTCATAGGTGTCACTAACTTCT 58.992 41.667 2.35 0.00 0.00 2.85
160 161 5.475909 TCGTCATAGGTGTCACTAACTTCTT 59.524 40.000 2.35 0.00 0.00 2.52
161 162 5.800941 CGTCATAGGTGTCACTAACTTCTTC 59.199 44.000 2.35 0.00 0.00 2.87
162 163 6.349445 CGTCATAGGTGTCACTAACTTCTTCT 60.349 42.308 2.35 0.00 0.00 2.85
163 164 7.030768 GTCATAGGTGTCACTAACTTCTTCTC 58.969 42.308 2.35 0.00 0.00 2.87
164 165 4.875561 AGGTGTCACTAACTTCTTCTCC 57.124 45.455 2.35 0.00 0.00 3.71
165 166 4.484912 AGGTGTCACTAACTTCTTCTCCT 58.515 43.478 2.35 0.00 0.00 3.69
166 167 5.642165 AGGTGTCACTAACTTCTTCTCCTA 58.358 41.667 2.35 0.00 0.00 2.94
167 168 5.477637 AGGTGTCACTAACTTCTTCTCCTAC 59.522 44.000 2.35 0.00 0.00 3.18
168 169 5.477637 GGTGTCACTAACTTCTTCTCCTACT 59.522 44.000 2.35 0.00 0.00 2.57
169 170 6.383415 GTGTCACTAACTTCTTCTCCTACTG 58.617 44.000 0.00 0.00 0.00 2.74
170 171 6.016108 GTGTCACTAACTTCTTCTCCTACTGT 60.016 42.308 0.00 0.00 0.00 3.55
171 172 6.207025 TGTCACTAACTTCTTCTCCTACTGTC 59.793 42.308 0.00 0.00 0.00 3.51
172 173 5.711036 TCACTAACTTCTTCTCCTACTGTCC 59.289 44.000 0.00 0.00 0.00 4.02
173 174 5.018149 ACTAACTTCTTCTCCTACTGTCCC 58.982 45.833 0.00 0.00 0.00 4.46
174 175 3.837399 ACTTCTTCTCCTACTGTCCCT 57.163 47.619 0.00 0.00 0.00 4.20
175 176 3.703921 ACTTCTTCTCCTACTGTCCCTC 58.296 50.000 0.00 0.00 0.00 4.30
176 177 3.076182 ACTTCTTCTCCTACTGTCCCTCA 59.924 47.826 0.00 0.00 0.00 3.86
177 178 3.827817 TCTTCTCCTACTGTCCCTCAA 57.172 47.619 0.00 0.00 0.00 3.02
178 179 4.127918 TCTTCTCCTACTGTCCCTCAAA 57.872 45.455 0.00 0.00 0.00 2.69
179 180 4.489737 TCTTCTCCTACTGTCCCTCAAAA 58.510 43.478 0.00 0.00 0.00 2.44
180 181 4.905456 TCTTCTCCTACTGTCCCTCAAAAA 59.095 41.667 0.00 0.00 0.00 1.94
181 182 4.891992 TCTCCTACTGTCCCTCAAAAAG 57.108 45.455 0.00 0.00 0.00 2.27
182 183 4.489737 TCTCCTACTGTCCCTCAAAAAGA 58.510 43.478 0.00 0.00 0.00 2.52
183 184 4.905456 TCTCCTACTGTCCCTCAAAAAGAA 59.095 41.667 0.00 0.00 0.00 2.52
184 185 5.368523 TCTCCTACTGTCCCTCAAAAAGAAA 59.631 40.000 0.00 0.00 0.00 2.52
185 186 6.008696 TCCTACTGTCCCTCAAAAAGAAAA 57.991 37.500 0.00 0.00 0.00 2.29
186 187 6.428295 TCCTACTGTCCCTCAAAAAGAAAAA 58.572 36.000 0.00 0.00 0.00 1.94
187 188 6.320418 TCCTACTGTCCCTCAAAAAGAAAAAC 59.680 38.462 0.00 0.00 0.00 2.43
188 189 6.321435 CCTACTGTCCCTCAAAAAGAAAAACT 59.679 38.462 0.00 0.00 0.00 2.66
189 190 6.605471 ACTGTCCCTCAAAAAGAAAAACTT 57.395 33.333 0.00 0.00 40.98 2.66
190 191 6.631016 ACTGTCCCTCAAAAAGAAAAACTTC 58.369 36.000 0.00 0.00 37.93 3.01
191 192 6.437477 ACTGTCCCTCAAAAAGAAAAACTTCT 59.563 34.615 0.00 0.00 37.93 2.85
192 193 7.039011 ACTGTCCCTCAAAAAGAAAAACTTCTT 60.039 33.333 0.00 0.00 42.62 2.52
193 194 7.320399 TGTCCCTCAAAAAGAAAAACTTCTTC 58.680 34.615 0.84 0.00 40.14 2.87
194 195 7.178451 TGTCCCTCAAAAAGAAAAACTTCTTCT 59.822 33.333 0.84 0.00 40.14 2.85
195 196 7.702772 GTCCCTCAAAAAGAAAAACTTCTTCTC 59.297 37.037 0.84 0.00 40.14 2.87
196 197 6.980978 CCCTCAAAAAGAAAAACTTCTTCTCC 59.019 38.462 0.84 0.00 40.14 3.71
197 198 7.147828 CCCTCAAAAAGAAAAACTTCTTCTCCT 60.148 37.037 0.84 0.00 40.14 3.69
198 199 8.903820 CCTCAAAAAGAAAAACTTCTTCTCCTA 58.096 33.333 0.84 0.00 40.14 2.94
199 200 9.723447 CTCAAAAAGAAAAACTTCTTCTCCTAC 57.277 33.333 0.84 0.00 40.14 3.18
200 201 9.462606 TCAAAAAGAAAAACTTCTTCTCCTACT 57.537 29.630 0.84 0.00 40.14 2.57
201 202 9.723447 CAAAAAGAAAAACTTCTTCTCCTACTC 57.277 33.333 0.84 0.00 40.14 2.59
202 203 9.462606 AAAAAGAAAAACTTCTTCTCCTACTCA 57.537 29.630 0.84 0.00 40.14 3.41
203 204 9.462606 AAAAGAAAAACTTCTTCTCCTACTCAA 57.537 29.630 0.84 0.00 40.14 3.02
204 205 9.462606 AAAGAAAAACTTCTTCTCCTACTCAAA 57.537 29.630 0.84 0.00 40.14 2.69
205 206 9.462606 AAGAAAAACTTCTTCTCCTACTCAAAA 57.537 29.630 0.00 0.00 36.63 2.44
206 207 9.634021 AGAAAAACTTCTTCTCCTACTCAAAAT 57.366 29.630 0.00 0.00 0.00 1.82
207 208 9.670719 GAAAAACTTCTTCTCCTACTCAAAATG 57.329 33.333 0.00 0.00 0.00 2.32
338 340 3.825328 ACTGTTGCAATCCAGAGAAACT 58.175 40.909 20.45 0.00 32.93 2.66
506 520 4.137116 ACTGCAGAACTTGTGTCAGTTA 57.863 40.909 23.35 0.00 37.11 2.24
560 574 3.829948 CAGTGCATGGTTTTTCTGCTAG 58.170 45.455 0.00 0.00 36.84 3.42
565 1329 6.030228 GTGCATGGTTTTTCTGCTAGTAATC 58.970 40.000 0.00 0.00 36.84 1.75
599 1363 2.712709 TCCGTTCCTGTGTTTCAAACA 58.287 42.857 0.00 0.00 39.52 2.83
601 1365 3.066064 TCCGTTCCTGTGTTTCAAACATG 59.934 43.478 6.17 2.93 44.35 3.21
612 1376 3.940209 TTCAAACATGCATCTGTTCCC 57.060 42.857 6.17 0.00 38.38 3.97
619 1384 3.202818 ACATGCATCTGTTCCCTATTCCA 59.797 43.478 0.00 0.00 0.00 3.53
677 1443 7.936950 ACATGTGTCTTCTACGATATTCATG 57.063 36.000 0.00 0.00 36.21 3.07
708 1474 7.639113 TTCTGTTCCAGTGTTTTTACAATCT 57.361 32.000 0.00 0.00 32.61 2.40
728 1494 2.205022 TGTGAATCAAAGAGGCCCTG 57.795 50.000 0.00 0.00 0.00 4.45
729 1495 1.704628 TGTGAATCAAAGAGGCCCTGA 59.295 47.619 0.00 0.00 0.00 3.86
730 1496 2.290514 TGTGAATCAAAGAGGCCCTGAG 60.291 50.000 0.00 0.00 0.00 3.35
731 1497 1.988107 TGAATCAAAGAGGCCCTGAGT 59.012 47.619 0.00 0.00 0.00 3.41
732 1498 3.055094 GTGAATCAAAGAGGCCCTGAGTA 60.055 47.826 0.00 0.00 0.00 2.59
733 1499 3.055094 TGAATCAAAGAGGCCCTGAGTAC 60.055 47.826 0.00 0.00 0.00 2.73
734 1500 2.327325 TCAAAGAGGCCCTGAGTACT 57.673 50.000 0.00 0.00 0.00 2.73
735 1501 2.621070 TCAAAGAGGCCCTGAGTACTT 58.379 47.619 0.00 0.00 0.00 2.24
736 1502 2.979678 TCAAAGAGGCCCTGAGTACTTT 59.020 45.455 0.00 0.00 0.00 2.66
737 1503 3.394606 TCAAAGAGGCCCTGAGTACTTTT 59.605 43.478 0.00 0.00 0.00 2.27
738 1504 4.141251 TCAAAGAGGCCCTGAGTACTTTTT 60.141 41.667 0.00 0.00 0.00 1.94
837 1603 2.170397 CCCAATCAATTTTACCTGGGCC 59.830 50.000 0.00 0.00 37.30 5.80
840 1606 4.506758 CAATCAATTTTACCTGGGCCTTG 58.493 43.478 4.53 0.00 0.00 3.61
859 1625 1.722636 GCATGCCTAAGCCTCACAGC 61.723 60.000 6.36 0.00 38.69 4.40
860 1626 1.099879 CATGCCTAAGCCTCACAGCC 61.100 60.000 0.00 0.00 38.69 4.85
861 1627 2.124529 GCCTAAGCCTCACAGCCC 60.125 66.667 0.00 0.00 0.00 5.19
862 1628 2.971598 GCCTAAGCCTCACAGCCCA 61.972 63.158 0.00 0.00 0.00 5.36
863 1629 1.078143 CCTAAGCCTCACAGCCCAC 60.078 63.158 0.00 0.00 0.00 4.61
864 1630 1.679311 CTAAGCCTCACAGCCCACA 59.321 57.895 0.00 0.00 0.00 4.17
865 1631 0.674895 CTAAGCCTCACAGCCCACAC 60.675 60.000 0.00 0.00 0.00 3.82
866 1632 1.127567 TAAGCCTCACAGCCCACACT 61.128 55.000 0.00 0.00 0.00 3.55
867 1633 2.359230 GCCTCACAGCCCACACTC 60.359 66.667 0.00 0.00 0.00 3.51
868 1634 2.348998 CCTCACAGCCCACACTCC 59.651 66.667 0.00 0.00 0.00 3.85
869 1635 2.519622 CCTCACAGCCCACACTCCA 61.520 63.158 0.00 0.00 0.00 3.86
870 1636 1.004080 CTCACAGCCCACACTCCAG 60.004 63.158 0.00 0.00 0.00 3.86
871 1637 1.762522 CTCACAGCCCACACTCCAGT 61.763 60.000 0.00 0.00 0.00 4.00
872 1638 0.471022 TCACAGCCCACACTCCAGTA 60.471 55.000 0.00 0.00 0.00 2.74
873 1639 0.320771 CACAGCCCACACTCCAGTAC 60.321 60.000 0.00 0.00 0.00 2.73
874 1640 1.079819 CAGCCCACACTCCAGTACG 60.080 63.158 0.00 0.00 0.00 3.67
875 1641 1.228769 AGCCCACACTCCAGTACGA 60.229 57.895 0.00 0.00 0.00 3.43
876 1642 0.614979 AGCCCACACTCCAGTACGAT 60.615 55.000 0.00 0.00 0.00 3.73
877 1643 0.179108 GCCCACACTCCAGTACGATC 60.179 60.000 0.00 0.00 0.00 3.69
878 1644 1.475403 CCCACACTCCAGTACGATCT 58.525 55.000 0.00 0.00 0.00 2.75
879 1645 1.825474 CCCACACTCCAGTACGATCTT 59.175 52.381 0.00 0.00 0.00 2.40
880 1646 2.233922 CCCACACTCCAGTACGATCTTT 59.766 50.000 0.00 0.00 0.00 2.52
881 1647 3.446161 CCCACACTCCAGTACGATCTTTA 59.554 47.826 0.00 0.00 0.00 1.85
882 1648 4.081862 CCCACACTCCAGTACGATCTTTAA 60.082 45.833 0.00 0.00 0.00 1.52
883 1649 5.103000 CCACACTCCAGTACGATCTTTAAG 58.897 45.833 0.00 0.00 0.00 1.85
884 1650 5.336531 CCACACTCCAGTACGATCTTTAAGT 60.337 44.000 0.00 0.00 0.00 2.24
885 1651 6.157211 CACACTCCAGTACGATCTTTAAGTT 58.843 40.000 0.00 0.00 0.00 2.66
926 1693 2.491621 GCATTCCGCAGCCCTTTC 59.508 61.111 0.00 0.00 41.79 2.62
967 1734 1.977129 CCAAAAGCTTCCCAATTCCCA 59.023 47.619 0.00 0.00 0.00 4.37
971 1738 1.376649 AGCTTCCCAATTCCCACTCT 58.623 50.000 0.00 0.00 0.00 3.24
1078 1872 3.443045 CGCCATGTCCCAGCCAAC 61.443 66.667 0.00 0.00 0.00 3.77
1628 2422 1.746991 CGGGCAGCTTCTTTCCCTC 60.747 63.158 0.00 0.00 36.61 4.30
1841 2635 0.623723 TCCTGGGGTAATGCACTTCC 59.376 55.000 0.00 0.00 0.00 3.46
1857 2651 2.251818 CTTCCTCCTTCCTCTGTGTCA 58.748 52.381 0.00 0.00 0.00 3.58
1863 2657 4.322349 CCTCCTTCCTCTGTGTCAGTTTAG 60.322 50.000 0.00 0.00 32.61 1.85
1869 2663 3.322254 CCTCTGTGTCAGTTTAGTCCTGT 59.678 47.826 0.00 0.00 32.61 4.00
1873 2667 5.128827 TCTGTGTCAGTTTAGTCCTGTTTCT 59.871 40.000 0.00 0.00 32.61 2.52
1913 2707 1.459975 CGCATCATGAGCAGCATACTC 59.540 52.381 15.19 0.00 34.82 2.59
2077 2871 2.514824 GCGGTTCCTGATGAGGGC 60.515 66.667 0.00 0.00 40.25 5.19
2084 2878 1.228184 CCTGATGAGGGCATGAGGC 60.228 63.158 0.00 0.00 46.51 4.70
2134 2928 1.630223 TGGCTGTGGCATTGAATGAA 58.370 45.000 9.76 0.00 40.87 2.57
2356 3150 1.938585 TCGATTCCACTGGAGGTTCT 58.061 50.000 0.00 0.00 31.21 3.01
2387 3181 0.652592 CCGCAAGAGAAAGTATGCCG 59.347 55.000 0.00 0.00 43.02 5.69
2421 3215 1.241315 TAGGCTCGCCCAAACTTTGC 61.241 55.000 3.92 0.00 36.58 3.68
2445 3239 8.629158 TGCAGACTTTTTAGATGTTAACATTGT 58.371 29.630 21.63 14.48 36.57 2.71
2503 3297 3.118112 ACAGAAAGGATACCATGGCTGAG 60.118 47.826 13.04 0.00 37.17 3.35
2626 3420 0.471617 GCCCAGACAGTATGATGGCT 59.528 55.000 7.91 0.00 42.46 4.75
2740 3534 5.337169 CCCATTAGAAGGCTCAGCTAGATAC 60.337 48.000 0.00 0.00 0.00 2.24
2818 3616 8.999905 TGTAACATCTACCATATAGTACCACA 57.000 34.615 0.00 0.00 0.00 4.17
2912 3710 0.109226 GTGTCGGTTTCCCTCTCTCG 60.109 60.000 0.00 0.00 0.00 4.04
3092 3891 5.373812 TCTTAGCTTATTCTTCCCCTTGG 57.626 43.478 0.00 0.00 0.00 3.61
3110 3909 5.368989 CCTTGGAAGATTGAGTATGGTACC 58.631 45.833 4.43 4.43 0.00 3.34
3121 3920 4.960469 TGAGTATGGTACCCAGTCCTAAAG 59.040 45.833 10.07 0.00 36.75 1.85
3239 4038 7.653311 ACAAAATCTTTCTGTCTAAATTGCCAC 59.347 33.333 0.00 0.00 0.00 5.01
3243 4042 7.106439 TCTTTCTGTCTAAATTGCCACAAAA 57.894 32.000 0.00 0.00 0.00 2.44
3244 4043 7.551585 TCTTTCTGTCTAAATTGCCACAAAAA 58.448 30.769 0.00 0.00 0.00 1.94
3377 4177 8.962679 TCTTGTTCATTACCAAACTTTTGTACT 58.037 29.630 0.00 0.00 36.45 2.73
3423 4223 1.311859 TTGAACTGCCACTGCTTCTG 58.688 50.000 0.00 0.00 38.71 3.02
3434 4234 3.058432 CCACTGCTTCTGTTCATGTCAAG 60.058 47.826 0.00 0.00 0.00 3.02
3725 5310 2.023318 GCTGCATGCTGACATCTCC 58.977 57.895 26.71 4.71 38.95 3.71
3813 5398 4.034510 CGATGATGAAGCCAAACTACCTTC 59.965 45.833 0.00 0.00 36.42 3.46
3822 5407 4.457949 AGCCAAACTACCTTCATTTTACCG 59.542 41.667 0.00 0.00 0.00 4.02
3894 5479 6.349280 GCTTCATCCTGCATAGTTAACACAAA 60.349 38.462 8.61 0.00 0.00 2.83
3931 5516 5.316167 TCCCATCCACATTTATCTGCATAC 58.684 41.667 0.00 0.00 0.00 2.39
3950 5535 5.569823 GCATACGGCGAATTCTTTGTTTTAA 59.430 36.000 16.62 0.00 0.00 1.52
4022 5608 5.832060 AGGACCCTTCATGATTGATTGATTC 59.168 40.000 0.00 0.00 0.00 2.52
4070 5656 9.912634 TGATTAATCTTTCCTTTAAAAGCACAG 57.087 29.630 16.24 0.00 36.41 3.66
4114 5700 7.050377 CCAGTCAAGATAATCACAAGGTATGT 58.950 38.462 0.00 0.00 45.34 2.29
4139 5725 3.634397 TGCCCTCCAAATACTTCTCTG 57.366 47.619 0.00 0.00 0.00 3.35
4141 5727 3.274288 GCCCTCCAAATACTTCTCTGTG 58.726 50.000 0.00 0.00 0.00 3.66
4211 5797 2.030371 TGCAAAGCAGGATGTTGAACA 58.970 42.857 0.00 0.00 39.31 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.077300 TCGACGAGGCTATAGGTAGAAA 57.923 45.455 1.04 0.00 0.00 2.52
1 2 3.758755 TCGACGAGGCTATAGGTAGAA 57.241 47.619 1.04 0.00 0.00 2.10
2 3 3.007723 ACATCGACGAGGCTATAGGTAGA 59.992 47.826 9.79 0.00 0.00 2.59
3 4 3.336468 ACATCGACGAGGCTATAGGTAG 58.664 50.000 9.79 0.00 0.00 3.18
4 5 3.007723 AGACATCGACGAGGCTATAGGTA 59.992 47.826 9.79 0.00 0.00 3.08
5 6 2.152830 GACATCGACGAGGCTATAGGT 58.847 52.381 9.79 0.00 0.00 3.08
6 7 2.417239 GAGACATCGACGAGGCTATAGG 59.583 54.545 9.79 0.00 0.00 2.57
7 8 3.331150 AGAGACATCGACGAGGCTATAG 58.669 50.000 9.79 0.00 0.00 1.31
8 9 3.327626 GAGAGACATCGACGAGGCTATA 58.672 50.000 9.79 0.00 0.00 1.31
9 10 2.147958 GAGAGACATCGACGAGGCTAT 58.852 52.381 9.79 5.18 0.00 2.97
10 11 1.584175 GAGAGACATCGACGAGGCTA 58.416 55.000 9.79 0.00 0.00 3.93
11 12 1.098712 GGAGAGACATCGACGAGGCT 61.099 60.000 9.79 7.75 0.00 4.58
12 13 1.357334 GGAGAGACATCGACGAGGC 59.643 63.158 9.79 2.68 0.00 4.70
13 14 1.095600 TTGGAGAGACATCGACGAGG 58.904 55.000 8.15 8.15 0.00 4.63
14 15 2.921634 TTTGGAGAGACATCGACGAG 57.078 50.000 3.01 0.00 0.00 4.18
15 16 4.578928 TGATATTTGGAGAGACATCGACGA 59.421 41.667 0.00 0.00 0.00 4.20
16 17 4.860072 TGATATTTGGAGAGACATCGACG 58.140 43.478 0.00 0.00 0.00 5.12
17 18 6.042777 TGTTGATATTTGGAGAGACATCGAC 58.957 40.000 0.00 0.00 0.00 4.20
18 19 6.220726 TGTTGATATTTGGAGAGACATCGA 57.779 37.500 0.00 0.00 0.00 3.59
19 20 6.758416 TCTTGTTGATATTTGGAGAGACATCG 59.242 38.462 0.00 0.00 0.00 3.84
20 21 8.498054 TTCTTGTTGATATTTGGAGAGACATC 57.502 34.615 0.00 0.00 0.00 3.06
21 22 9.118300 GATTCTTGTTGATATTTGGAGAGACAT 57.882 33.333 0.00 0.00 0.00 3.06
22 23 7.554118 GGATTCTTGTTGATATTTGGAGAGACA 59.446 37.037 0.00 0.00 0.00 3.41
23 24 7.772757 AGGATTCTTGTTGATATTTGGAGAGAC 59.227 37.037 0.00 0.00 0.00 3.36
24 25 7.865820 AGGATTCTTGTTGATATTTGGAGAGA 58.134 34.615 0.00 0.00 0.00 3.10
25 26 8.404000 CAAGGATTCTTGTTGATATTTGGAGAG 58.596 37.037 5.49 0.00 43.92 3.20
26 27 7.340232 CCAAGGATTCTTGTTGATATTTGGAGA 59.660 37.037 12.86 0.00 46.65 3.71
27 28 7.486647 CCAAGGATTCTTGTTGATATTTGGAG 58.513 38.462 12.86 0.00 46.65 3.86
28 29 6.127366 GCCAAGGATTCTTGTTGATATTTGGA 60.127 38.462 12.86 0.00 46.65 3.53
29 30 6.044682 GCCAAGGATTCTTGTTGATATTTGG 58.955 40.000 12.86 0.00 46.65 3.28
30 31 6.632909 TGCCAAGGATTCTTGTTGATATTTG 58.367 36.000 12.86 0.00 46.65 2.32
31 32 6.855763 TGCCAAGGATTCTTGTTGATATTT 57.144 33.333 12.86 0.00 46.65 1.40
32 33 6.381994 ACATGCCAAGGATTCTTGTTGATATT 59.618 34.615 12.86 0.00 46.65 1.28
33 34 5.895534 ACATGCCAAGGATTCTTGTTGATAT 59.104 36.000 12.86 0.00 46.65 1.63
34 35 5.263599 ACATGCCAAGGATTCTTGTTGATA 58.736 37.500 12.86 0.00 46.65 2.15
35 36 4.091549 ACATGCCAAGGATTCTTGTTGAT 58.908 39.130 12.86 0.00 46.65 2.57
36 37 3.499338 ACATGCCAAGGATTCTTGTTGA 58.501 40.909 12.86 0.00 46.65 3.18
37 38 3.947910 ACATGCCAAGGATTCTTGTTG 57.052 42.857 12.86 9.43 46.65 3.33
38 39 3.259123 GGAACATGCCAAGGATTCTTGTT 59.741 43.478 12.86 0.22 46.65 2.83
39 40 2.827921 GGAACATGCCAAGGATTCTTGT 59.172 45.455 12.86 0.00 46.65 3.16
41 42 2.094675 CGGAACATGCCAAGGATTCTT 58.905 47.619 0.00 0.00 0.00 2.52
42 43 1.004745 ACGGAACATGCCAAGGATTCT 59.995 47.619 0.00 0.00 0.00 2.40
43 44 1.401905 GACGGAACATGCCAAGGATTC 59.598 52.381 0.00 0.00 0.00 2.52
44 45 1.463674 GACGGAACATGCCAAGGATT 58.536 50.000 0.00 0.00 0.00 3.01
45 46 0.744414 CGACGGAACATGCCAAGGAT 60.744 55.000 0.00 0.00 0.00 3.24
46 47 1.375396 CGACGGAACATGCCAAGGA 60.375 57.895 0.00 0.00 0.00 3.36
47 48 0.744414 ATCGACGGAACATGCCAAGG 60.744 55.000 0.00 0.00 0.00 3.61
48 49 1.086696 AATCGACGGAACATGCCAAG 58.913 50.000 0.00 0.00 0.00 3.61
49 50 2.388310 TAATCGACGGAACATGCCAA 57.612 45.000 0.00 0.00 0.00 4.52
50 51 2.613026 ATAATCGACGGAACATGCCA 57.387 45.000 0.00 0.00 0.00 4.92
51 52 3.650139 AGTATAATCGACGGAACATGCC 58.350 45.455 0.00 0.00 0.00 4.40
52 53 3.673809 GGAGTATAATCGACGGAACATGC 59.326 47.826 0.00 0.00 0.00 4.06
53 54 4.022242 AGGGAGTATAATCGACGGAACATG 60.022 45.833 0.00 0.00 0.00 3.21
54 55 4.150359 AGGGAGTATAATCGACGGAACAT 58.850 43.478 0.00 0.00 0.00 2.71
55 56 3.559069 AGGGAGTATAATCGACGGAACA 58.441 45.455 0.00 0.00 0.00 3.18
56 57 4.759183 AGTAGGGAGTATAATCGACGGAAC 59.241 45.833 0.00 0.00 0.00 3.62
57 58 4.978099 AGTAGGGAGTATAATCGACGGAA 58.022 43.478 0.00 0.00 0.00 4.30
58 59 4.630644 AGTAGGGAGTATAATCGACGGA 57.369 45.455 0.00 0.00 0.00 4.69
59 60 6.808008 TTAAGTAGGGAGTATAATCGACGG 57.192 41.667 0.00 0.00 0.00 4.79
60 61 9.985318 CTAATTAAGTAGGGAGTATAATCGACG 57.015 37.037 1.93 0.00 0.00 5.12
83 84 9.690913 AGTTCATGTGTATGGTAGTACTACTAA 57.309 33.333 27.71 18.63 36.36 2.24
84 85 9.334947 GAGTTCATGTGTATGGTAGTACTACTA 57.665 37.037 27.71 24.01 36.36 1.82
85 86 7.832685 TGAGTTCATGTGTATGGTAGTACTACT 59.167 37.037 27.71 14.80 36.36 2.57
86 87 7.914346 GTGAGTTCATGTGTATGGTAGTACTAC 59.086 40.741 22.53 22.53 34.97 2.73
87 88 7.612633 TGTGAGTTCATGTGTATGGTAGTACTA 59.387 37.037 0.00 0.00 34.97 1.82
88 89 6.436218 TGTGAGTTCATGTGTATGGTAGTACT 59.564 38.462 0.00 0.00 34.97 2.73
89 90 6.530534 GTGTGAGTTCATGTGTATGGTAGTAC 59.469 42.308 0.00 0.00 34.97 2.73
90 91 6.624204 CGTGTGAGTTCATGTGTATGGTAGTA 60.624 42.308 0.00 0.00 34.97 1.82
91 92 5.479306 GTGTGAGTTCATGTGTATGGTAGT 58.521 41.667 0.00 0.00 34.97 2.73
92 93 4.562789 CGTGTGAGTTCATGTGTATGGTAG 59.437 45.833 0.00 0.00 34.97 3.18
93 94 4.021807 ACGTGTGAGTTCATGTGTATGGTA 60.022 41.667 0.00 0.00 36.39 3.25
94 95 3.244078 ACGTGTGAGTTCATGTGTATGGT 60.244 43.478 0.00 0.00 36.39 3.55
95 96 3.325870 ACGTGTGAGTTCATGTGTATGG 58.674 45.455 0.00 0.00 36.39 2.74
96 97 3.059438 CGACGTGTGAGTTCATGTGTATG 59.941 47.826 0.00 0.00 37.63 2.39
97 98 3.242518 CGACGTGTGAGTTCATGTGTAT 58.757 45.455 0.00 0.00 37.63 2.29
98 99 2.033675 ACGACGTGTGAGTTCATGTGTA 59.966 45.455 0.00 0.00 37.63 2.90
99 100 1.202371 ACGACGTGTGAGTTCATGTGT 60.202 47.619 0.00 0.00 37.63 3.72
100 101 1.452025 GACGACGTGTGAGTTCATGTG 59.548 52.381 4.58 0.00 37.63 3.21
101 102 1.337071 AGACGACGTGTGAGTTCATGT 59.663 47.619 4.58 0.00 39.81 3.21
102 103 2.051879 AGACGACGTGTGAGTTCATG 57.948 50.000 4.58 0.00 0.00 3.07
103 104 3.909776 TTAGACGACGTGTGAGTTCAT 57.090 42.857 4.58 0.00 0.00 2.57
104 105 3.909776 ATTAGACGACGTGTGAGTTCA 57.090 42.857 4.58 0.00 0.00 3.18
105 106 6.082338 TCTTTATTAGACGACGTGTGAGTTC 58.918 40.000 4.58 0.00 0.00 3.01
106 107 6.005583 TCTTTATTAGACGACGTGTGAGTT 57.994 37.500 4.58 0.00 0.00 3.01
107 108 5.618056 TCTTTATTAGACGACGTGTGAGT 57.382 39.130 4.58 0.00 0.00 3.41
108 109 6.255950 TGATCTTTATTAGACGACGTGTGAG 58.744 40.000 4.58 0.00 35.19 3.51
109 110 6.093082 TCTGATCTTTATTAGACGACGTGTGA 59.907 38.462 4.58 0.00 35.19 3.58
110 111 6.255950 TCTGATCTTTATTAGACGACGTGTG 58.744 40.000 4.58 0.00 35.19 3.82
111 112 6.093771 ACTCTGATCTTTATTAGACGACGTGT 59.906 38.462 4.58 3.29 35.19 4.49
112 113 6.487960 ACTCTGATCTTTATTAGACGACGTG 58.512 40.000 4.58 0.00 35.19 4.49
113 114 6.509837 CGACTCTGATCTTTATTAGACGACGT 60.510 42.308 0.00 0.00 35.19 4.34
114 115 5.841811 CGACTCTGATCTTTATTAGACGACG 59.158 44.000 0.00 0.00 35.19 5.12
115 116 6.717413 ACGACTCTGATCTTTATTAGACGAC 58.283 40.000 0.00 0.00 35.19 4.34
116 117 6.537660 TGACGACTCTGATCTTTATTAGACGA 59.462 38.462 0.00 0.00 35.19 4.20
117 118 6.716438 TGACGACTCTGATCTTTATTAGACG 58.284 40.000 0.00 0.00 35.19 4.18
118 119 9.820229 CTATGACGACTCTGATCTTTATTAGAC 57.180 37.037 0.00 0.00 35.19 2.59
119 120 9.004717 CCTATGACGACTCTGATCTTTATTAGA 57.995 37.037 0.00 0.00 37.28 2.10
120 121 8.788806 ACCTATGACGACTCTGATCTTTATTAG 58.211 37.037 0.00 0.00 0.00 1.73
121 122 8.568794 CACCTATGACGACTCTGATCTTTATTA 58.431 37.037 0.00 0.00 0.00 0.98
122 123 7.068839 ACACCTATGACGACTCTGATCTTTATT 59.931 37.037 0.00 0.00 0.00 1.40
123 124 6.547880 ACACCTATGACGACTCTGATCTTTAT 59.452 38.462 0.00 0.00 0.00 1.40
124 125 5.886474 ACACCTATGACGACTCTGATCTTTA 59.114 40.000 0.00 0.00 0.00 1.85
125 126 4.707448 ACACCTATGACGACTCTGATCTTT 59.293 41.667 0.00 0.00 0.00 2.52
126 127 4.274147 ACACCTATGACGACTCTGATCTT 58.726 43.478 0.00 0.00 0.00 2.40
127 128 3.880490 GACACCTATGACGACTCTGATCT 59.120 47.826 0.00 0.00 0.00 2.75
128 129 3.628032 TGACACCTATGACGACTCTGATC 59.372 47.826 0.00 0.00 0.00 2.92
129 130 3.378742 GTGACACCTATGACGACTCTGAT 59.621 47.826 0.00 0.00 0.00 2.90
130 131 2.747989 GTGACACCTATGACGACTCTGA 59.252 50.000 0.00 0.00 0.00 3.27
131 132 2.750166 AGTGACACCTATGACGACTCTG 59.250 50.000 0.84 0.00 0.00 3.35
132 133 3.074675 AGTGACACCTATGACGACTCT 57.925 47.619 0.84 0.00 0.00 3.24
133 134 4.395542 AGTTAGTGACACCTATGACGACTC 59.604 45.833 0.84 0.00 0.00 3.36
134 135 4.333690 AGTTAGTGACACCTATGACGACT 58.666 43.478 0.84 0.00 0.00 4.18
135 136 4.698583 AGTTAGTGACACCTATGACGAC 57.301 45.455 0.84 0.00 0.00 4.34
136 137 5.008331 AGAAGTTAGTGACACCTATGACGA 58.992 41.667 0.84 0.00 0.00 4.20
137 138 5.312120 AGAAGTTAGTGACACCTATGACG 57.688 43.478 0.84 0.00 0.00 4.35
138 139 6.926313 AGAAGAAGTTAGTGACACCTATGAC 58.074 40.000 0.84 0.00 0.00 3.06
139 140 6.153000 GGAGAAGAAGTTAGTGACACCTATGA 59.847 42.308 0.84 0.00 0.00 2.15
140 141 6.153680 AGGAGAAGAAGTTAGTGACACCTATG 59.846 42.308 0.84 0.00 0.00 2.23
141 142 6.257586 AGGAGAAGAAGTTAGTGACACCTAT 58.742 40.000 0.84 0.00 0.00 2.57
142 143 5.642165 AGGAGAAGAAGTTAGTGACACCTA 58.358 41.667 0.84 0.00 0.00 3.08
143 144 4.484912 AGGAGAAGAAGTTAGTGACACCT 58.515 43.478 0.84 0.00 0.00 4.00
144 145 4.875561 AGGAGAAGAAGTTAGTGACACC 57.124 45.455 0.84 0.00 0.00 4.16
145 146 6.016108 ACAGTAGGAGAAGAAGTTAGTGACAC 60.016 42.308 0.00 0.00 0.00 3.67
146 147 6.069331 ACAGTAGGAGAAGAAGTTAGTGACA 58.931 40.000 0.00 0.00 0.00 3.58
147 148 6.349528 GGACAGTAGGAGAAGAAGTTAGTGAC 60.350 46.154 0.00 0.00 0.00 3.67
148 149 5.711036 GGACAGTAGGAGAAGAAGTTAGTGA 59.289 44.000 0.00 0.00 0.00 3.41
149 150 5.105675 GGGACAGTAGGAGAAGAAGTTAGTG 60.106 48.000 0.00 0.00 0.00 2.74
150 151 5.018149 GGGACAGTAGGAGAAGAAGTTAGT 58.982 45.833 0.00 0.00 0.00 2.24
151 152 5.265989 AGGGACAGTAGGAGAAGAAGTTAG 58.734 45.833 0.00 0.00 0.00 2.34
152 153 5.222275 TGAGGGACAGTAGGAGAAGAAGTTA 60.222 44.000 0.00 0.00 0.00 2.24
153 154 4.090819 GAGGGACAGTAGGAGAAGAAGTT 58.909 47.826 0.00 0.00 0.00 2.66
154 155 3.076182 TGAGGGACAGTAGGAGAAGAAGT 59.924 47.826 0.00 0.00 0.00 3.01
155 156 3.702792 TGAGGGACAGTAGGAGAAGAAG 58.297 50.000 0.00 0.00 0.00 2.85
156 157 3.827817 TGAGGGACAGTAGGAGAAGAA 57.172 47.619 0.00 0.00 0.00 2.52
157 158 3.827817 TTGAGGGACAGTAGGAGAAGA 57.172 47.619 0.00 0.00 0.00 2.87
158 159 4.891992 TTTTGAGGGACAGTAGGAGAAG 57.108 45.455 0.00 0.00 0.00 2.85
159 160 4.905456 TCTTTTTGAGGGACAGTAGGAGAA 59.095 41.667 0.00 0.00 0.00 2.87
160 161 4.489737 TCTTTTTGAGGGACAGTAGGAGA 58.510 43.478 0.00 0.00 0.00 3.71
161 162 4.891992 TCTTTTTGAGGGACAGTAGGAG 57.108 45.455 0.00 0.00 0.00 3.69
162 163 5.640158 TTTCTTTTTGAGGGACAGTAGGA 57.360 39.130 0.00 0.00 0.00 2.94
163 164 6.321435 AGTTTTTCTTTTTGAGGGACAGTAGG 59.679 38.462 0.00 0.00 0.00 3.18
164 165 7.334844 AGTTTTTCTTTTTGAGGGACAGTAG 57.665 36.000 0.00 0.00 0.00 2.57
165 166 7.614192 AGAAGTTTTTCTTTTTGAGGGACAGTA 59.386 33.333 0.00 0.00 40.79 2.74
166 167 6.437477 AGAAGTTTTTCTTTTTGAGGGACAGT 59.563 34.615 0.00 0.00 40.79 3.55
167 168 6.867550 AGAAGTTTTTCTTTTTGAGGGACAG 58.132 36.000 0.00 0.00 40.79 3.51
168 169 6.850752 AGAAGTTTTTCTTTTTGAGGGACA 57.149 33.333 0.00 0.00 40.79 4.02
180 181 9.634021 ATTTTGAGTAGGAGAAGAAGTTTTTCT 57.366 29.630 8.33 8.33 45.51 2.52
181 182 9.670719 CATTTTGAGTAGGAGAAGAAGTTTTTC 57.329 33.333 0.00 0.00 0.00 2.29
182 183 9.408648 TCATTTTGAGTAGGAGAAGAAGTTTTT 57.591 29.630 0.00 0.00 0.00 1.94
183 184 8.980481 TCATTTTGAGTAGGAGAAGAAGTTTT 57.020 30.769 0.00 0.00 0.00 2.43
184 185 7.663493 CCTCATTTTGAGTAGGAGAAGAAGTTT 59.337 37.037 4.00 0.00 42.80 2.66
185 186 7.164803 CCTCATTTTGAGTAGGAGAAGAAGTT 58.835 38.462 4.00 0.00 42.80 2.66
186 187 6.706295 CCTCATTTTGAGTAGGAGAAGAAGT 58.294 40.000 4.00 0.00 42.80 3.01
187 188 5.584251 GCCTCATTTTGAGTAGGAGAAGAAG 59.416 44.000 4.00 0.00 42.80 2.85
188 189 5.491982 GCCTCATTTTGAGTAGGAGAAGAA 58.508 41.667 4.00 0.00 42.80 2.52
189 190 4.080863 GGCCTCATTTTGAGTAGGAGAAGA 60.081 45.833 0.00 0.00 42.80 2.87
190 191 4.080638 AGGCCTCATTTTGAGTAGGAGAAG 60.081 45.833 0.00 0.00 42.80 2.85
191 192 3.846588 AGGCCTCATTTTGAGTAGGAGAA 59.153 43.478 0.00 0.00 42.80 2.87
192 193 3.452627 GAGGCCTCATTTTGAGTAGGAGA 59.547 47.826 28.43 0.00 42.80 3.71
193 194 3.432890 GGAGGCCTCATTTTGAGTAGGAG 60.433 52.174 33.29 0.00 42.80 3.69
194 195 2.505819 GGAGGCCTCATTTTGAGTAGGA 59.494 50.000 33.29 0.00 42.80 2.94
195 196 2.507471 AGGAGGCCTCATTTTGAGTAGG 59.493 50.000 33.29 0.00 42.80 3.18
196 197 3.922171 AGGAGGCCTCATTTTGAGTAG 57.078 47.619 33.29 0.00 42.80 2.57
197 198 4.042809 TCAAAGGAGGCCTCATTTTGAGTA 59.957 41.667 36.39 25.41 42.80 2.59
198 199 3.160269 CAAAGGAGGCCTCATTTTGAGT 58.840 45.455 35.57 20.80 42.80 3.41
199 200 3.424703 TCAAAGGAGGCCTCATTTTGAG 58.575 45.455 36.39 28.37 40.99 3.02
200 201 3.524095 TCAAAGGAGGCCTCATTTTGA 57.476 42.857 36.39 36.39 40.99 2.69
201 202 4.813750 AATCAAAGGAGGCCTCATTTTG 57.186 40.909 36.18 35.08 40.99 2.44
202 203 6.933514 TTAAATCAAAGGAGGCCTCATTTT 57.066 33.333 36.18 28.62 40.99 1.82
203 204 6.933514 TTTAAATCAAAGGAGGCCTCATTT 57.066 33.333 33.88 33.88 43.30 2.32
204 205 6.535963 CTTTAAATCAAAGGAGGCCTCATT 57.464 37.500 33.29 30.00 40.08 2.57
250 252 4.622220 GCACTTCCAATGGAATGAGCATTT 60.622 41.667 15.91 0.00 41.23 2.32
338 340 4.516698 GCAAAATCAGAGGAGACAAACAGA 59.483 41.667 0.00 0.00 0.00 3.41
403 405 5.221461 GGAATTAACTCTCTATTGCCTCGGA 60.221 44.000 0.00 0.00 0.00 4.55
472 486 2.050985 GCAGTTGCACGTGCCTTC 60.051 61.111 35.72 24.44 41.18 3.46
493 507 3.141398 CATGCACCTAACTGACACAAGT 58.859 45.455 0.00 0.00 0.00 3.16
506 520 0.692476 TAGACACAAGCCATGCACCT 59.308 50.000 0.00 0.00 0.00 4.00
553 567 5.138276 ACGTAGGAATGGATTACTAGCAGA 58.862 41.667 0.00 0.00 34.02 4.26
560 574 5.399604 CGGAAAACGTAGGAATGGATTAC 57.600 43.478 0.00 0.00 37.93 1.89
589 1353 4.501229 GGGAACAGATGCATGTTTGAAACA 60.501 41.667 13.66 13.66 43.32 2.83
599 1363 3.461085 AGTGGAATAGGGAACAGATGCAT 59.539 43.478 0.00 0.00 0.00 3.96
601 1365 3.567478 AGTGGAATAGGGAACAGATGC 57.433 47.619 0.00 0.00 0.00 3.91
612 1376 5.983540 AGCAGAGGAAAAGTAGTGGAATAG 58.016 41.667 0.00 0.00 0.00 1.73
619 1384 6.207614 GGAATGAAAAGCAGAGGAAAAGTAGT 59.792 38.462 0.00 0.00 0.00 2.73
708 1474 2.108075 TCAGGGCCTCTTTGATTCACAA 59.892 45.455 0.95 0.00 36.65 3.33
757 1523 9.268268 CCAGTTACAGCGATAGGATAAAATTAA 57.732 33.333 0.00 0.00 0.00 1.40
758 1524 7.876068 CCCAGTTACAGCGATAGGATAAAATTA 59.124 37.037 0.00 0.00 0.00 1.40
759 1525 6.710744 CCCAGTTACAGCGATAGGATAAAATT 59.289 38.462 0.00 0.00 0.00 1.82
760 1526 6.231211 CCCAGTTACAGCGATAGGATAAAAT 58.769 40.000 0.00 0.00 0.00 1.82
761 1527 5.607477 CCCAGTTACAGCGATAGGATAAAA 58.393 41.667 0.00 0.00 0.00 1.52
762 1528 4.502604 GCCCAGTTACAGCGATAGGATAAA 60.503 45.833 0.00 0.00 0.00 1.40
763 1529 3.006537 GCCCAGTTACAGCGATAGGATAA 59.993 47.826 0.00 0.00 0.00 1.75
764 1530 2.561419 GCCCAGTTACAGCGATAGGATA 59.439 50.000 0.00 0.00 0.00 2.59
765 1531 1.344763 GCCCAGTTACAGCGATAGGAT 59.655 52.381 0.00 0.00 0.00 3.24
766 1532 0.750850 GCCCAGTTACAGCGATAGGA 59.249 55.000 0.00 0.00 0.00 2.94
804 1570 0.471591 TGATTGGGCAGGCCAAGTTT 60.472 50.000 30.48 16.54 37.98 2.66
809 1575 1.360185 AAAATTGATTGGGCAGGCCA 58.640 45.000 12.83 12.83 37.98 5.36
825 1591 1.265236 CATGCAAGGCCCAGGTAAAA 58.735 50.000 0.00 0.00 0.00 1.52
837 1603 0.737219 GTGAGGCTTAGGCATGCAAG 59.263 55.000 21.36 16.20 40.87 4.01
840 1606 1.722636 GCTGTGAGGCTTAGGCATGC 61.723 60.000 9.90 9.90 40.87 4.06
847 1613 1.127567 AGTGTGGGCTGTGAGGCTTA 61.128 55.000 0.00 0.00 41.09 3.09
859 1625 1.475403 AGATCGTACTGGAGTGTGGG 58.525 55.000 0.00 0.00 0.00 4.61
860 1626 3.594603 AAAGATCGTACTGGAGTGTGG 57.405 47.619 0.00 0.00 0.00 4.17
861 1627 5.710984 ACTTAAAGATCGTACTGGAGTGTG 58.289 41.667 0.00 0.00 0.00 3.82
862 1628 5.979288 ACTTAAAGATCGTACTGGAGTGT 57.021 39.130 0.00 0.00 0.00 3.55
863 1629 5.805994 GGAACTTAAAGATCGTACTGGAGTG 59.194 44.000 0.00 0.00 0.00 3.51
864 1630 5.715753 AGGAACTTAAAGATCGTACTGGAGT 59.284 40.000 0.00 0.00 27.25 3.85
865 1631 6.127703 TGAGGAACTTAAAGATCGTACTGGAG 60.128 42.308 0.00 0.00 41.55 3.86
866 1632 5.713389 TGAGGAACTTAAAGATCGTACTGGA 59.287 40.000 0.00 0.00 41.55 3.86
867 1633 5.962433 TGAGGAACTTAAAGATCGTACTGG 58.038 41.667 0.00 0.00 41.55 4.00
868 1634 7.273815 GTCTTGAGGAACTTAAAGATCGTACTG 59.726 40.741 0.00 0.00 41.30 2.74
869 1635 7.314393 GTCTTGAGGAACTTAAAGATCGTACT 58.686 38.462 0.00 0.00 41.30 2.73
870 1636 6.250951 CGTCTTGAGGAACTTAAAGATCGTAC 59.749 42.308 0.00 0.00 41.30 3.67
871 1637 6.320171 CGTCTTGAGGAACTTAAAGATCGTA 58.680 40.000 0.00 0.00 41.30 3.43
872 1638 5.162075 CGTCTTGAGGAACTTAAAGATCGT 58.838 41.667 0.00 0.00 41.30 3.73
873 1639 4.563184 CCGTCTTGAGGAACTTAAAGATCG 59.437 45.833 0.00 0.00 41.30 3.69
874 1640 4.330347 GCCGTCTTGAGGAACTTAAAGATC 59.670 45.833 0.00 0.00 41.30 2.75
875 1641 4.254492 GCCGTCTTGAGGAACTTAAAGAT 58.746 43.478 0.00 0.00 41.30 2.40
876 1642 3.556423 GGCCGTCTTGAGGAACTTAAAGA 60.556 47.826 0.00 0.00 41.55 2.52
877 1643 2.742589 GGCCGTCTTGAGGAACTTAAAG 59.257 50.000 0.00 0.00 41.55 1.85
878 1644 2.551504 GGGCCGTCTTGAGGAACTTAAA 60.552 50.000 0.00 0.00 41.55 1.52
879 1645 1.002773 GGGCCGTCTTGAGGAACTTAA 59.997 52.381 0.00 0.00 41.55 1.85
880 1646 0.611714 GGGCCGTCTTGAGGAACTTA 59.388 55.000 0.00 0.00 41.55 2.24
881 1647 1.375326 GGGCCGTCTTGAGGAACTT 59.625 57.895 0.00 0.00 41.55 2.66
883 1649 0.322546 ATTGGGCCGTCTTGAGGAAC 60.323 55.000 0.00 0.00 0.00 3.62
884 1650 0.035439 GATTGGGCCGTCTTGAGGAA 60.035 55.000 0.00 0.00 0.00 3.36
885 1651 1.602237 GATTGGGCCGTCTTGAGGA 59.398 57.895 0.00 0.00 0.00 3.71
967 1734 2.722201 GGGAATGGCGACGGAGAGT 61.722 63.158 0.00 0.00 0.00 3.24
971 1738 3.006728 AAGGGGAATGGCGACGGA 61.007 61.111 0.00 0.00 0.00 4.69
1196 1990 4.675029 AGGGGTTCGCCGTCGTTG 62.675 66.667 0.41 0.00 38.45 4.10
1547 2341 1.017387 GATAAACAAGCTCGCCCTGG 58.983 55.000 0.00 0.00 0.00 4.45
1590 2384 1.306997 CCTTGTCCCAGCCCCTAGA 60.307 63.158 0.00 0.00 0.00 2.43
1592 2386 2.286121 CCCTTGTCCCAGCCCCTA 60.286 66.667 0.00 0.00 0.00 3.53
1613 2407 0.393673 GGAGGAGGGAAAGAAGCTGC 60.394 60.000 0.00 0.00 0.00 5.25
1841 2635 3.760580 AAACTGACACAGAGGAAGGAG 57.239 47.619 5.76 0.00 35.18 3.69
1857 2651 8.164070 ACAATCCATTAGAAACAGGACTAAACT 58.836 33.333 0.00 0.00 33.34 2.66
1863 2657 4.142381 GCCACAATCCATTAGAAACAGGAC 60.142 45.833 0.00 0.00 32.04 3.85
1869 2663 6.457663 CGAAATACGCCACAATCCATTAGAAA 60.458 38.462 0.00 0.00 34.51 2.52
1873 2667 4.804608 CGAAATACGCCACAATCCATTA 57.195 40.909 0.00 0.00 34.51 1.90
2077 2871 0.523968 CAAACAATCGCCGCCTCATG 60.524 55.000 0.00 0.00 0.00 3.07
2084 2878 1.650153 CAAATGCTCAAACAATCGCCG 59.350 47.619 0.00 0.00 0.00 6.46
2125 2919 5.047092 GGGGACACTGAATGTTTCATTCAAT 60.047 40.000 20.48 11.98 43.56 2.57
2356 3150 1.135527 CTCTTGCGGTTACGGGTATCA 59.864 52.381 0.00 0.00 41.36 2.15
2387 3181 4.033817 GCGAGCCTAGAAATGATATCATGC 59.966 45.833 18.85 15.51 36.56 4.06
2503 3297 5.743422 GCCAGGACCTTTCATAAGTATCTCC 60.743 48.000 0.00 0.00 0.00 3.71
2626 3420 2.270352 AAGCATTCGTTCCACTTCCA 57.730 45.000 0.00 0.00 0.00 3.53
2740 3534 3.097877 TCTTCATCGATGTTGGATCGG 57.902 47.619 24.09 7.56 41.45 4.18
2912 3710 7.045126 AGGCTATCTTCTGTACATGTACTTC 57.955 40.000 30.69 10.71 37.00 3.01
3110 3909 6.708285 ACAGGTACATAAACTTTAGGACTGG 58.292 40.000 15.00 4.47 0.00 4.00
3121 3920 6.565999 GCTCACAGACAAACAGGTACATAAAC 60.566 42.308 0.00 0.00 0.00 2.01
3204 4003 8.237811 AGACAGAAAGATTTTGTTACAACCAT 57.762 30.769 0.00 0.00 0.00 3.55
3216 4015 7.288810 TGTGGCAATTTAGACAGAAAGATTT 57.711 32.000 0.00 0.00 0.00 2.17
3217 4016 6.899393 TGTGGCAATTTAGACAGAAAGATT 57.101 33.333 0.00 0.00 0.00 2.40
3261 4060 8.984764 GCATATTGACGTAATGGTCTTTACATA 58.015 33.333 0.00 0.36 37.81 2.29
3354 4154 8.623030 GGTAGTACAAAAGTTTGGTAATGAACA 58.377 33.333 12.34 0.00 42.34 3.18
3368 4168 5.414765 GGAACAGGGATTGGTAGTACAAAAG 59.585 44.000 2.06 0.00 33.48 2.27
3402 4202 1.952296 AGAAGCAGTGGCAGTTCAAAG 59.048 47.619 0.00 0.00 44.61 2.77
3423 4223 4.627611 ATATGCAGCACTTGACATGAAC 57.372 40.909 0.00 0.00 0.00 3.18
3462 4262 4.682787 CAATACGCATACACCTCAAGAGA 58.317 43.478 0.00 0.00 0.00 3.10
3584 5166 1.746220 ACTGTCCACGCATCTAGAGAC 59.254 52.381 0.00 0.00 0.00 3.36
3660 5242 5.820423 GGTCAGTGGTTGTATATTGCATGTA 59.180 40.000 0.00 0.00 0.00 2.29
3725 5310 7.545265 TCTTCACAAAAGAAATCACCAAAGTTG 59.455 33.333 0.00 0.00 0.00 3.16
3791 5376 4.943705 TGAAGGTAGTTTGGCTTCATCATC 59.056 41.667 0.00 0.00 0.00 2.92
3813 5398 6.148811 ACAGAAGTACAATGGTCGGTAAAATG 59.851 38.462 0.00 0.00 0.00 2.32
3931 5516 7.110511 GCATTATTAAAACAAAGAATTCGCCG 58.889 34.615 0.00 0.00 0.00 6.46
3950 5535 3.220110 CCAGCCAGTCAGAATGCATTAT 58.780 45.455 12.97 6.27 34.76 1.28
4001 5586 5.953548 TGTGAATCAATCAATCATGAAGGGT 59.046 36.000 0.00 0.00 40.50 4.34
4022 5608 1.069703 CCGTCACATCAAAGCACTGTG 60.070 52.381 2.76 2.76 41.24 3.66
4040 5626 7.220875 GCTTTTAAAGGAAAGATTAATCAGCCG 59.779 37.037 17.56 3.04 38.60 5.52
4114 5700 4.998051 AGAAGTATTTGGAGGGCAAAGAA 58.002 39.130 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.