Multiple sequence alignment - TraesCS5D01G405100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G405100 chr5D 100.000 2639 0 0 1 2639 470049999 470047361 0.000000e+00 4874.0
1 TraesCS5D01G405100 chr5B 91.309 1956 68 37 708 2623 577524967 577523074 0.000000e+00 2577.0
2 TraesCS5D01G405100 chr5B 79.375 1120 150 46 812 1899 577531283 577530213 0.000000e+00 713.0
3 TraesCS5D01G405100 chr5B 79.167 216 24 10 10 205 24235281 24235495 2.130000e-26 130.0
4 TraesCS5D01G405100 chr5A 90.663 1403 68 30 765 2149 590850743 590849386 0.000000e+00 1807.0
5 TraesCS5D01G405100 chr5A 90.500 400 36 2 5 403 590862379 590861981 6.470000e-146 527.0
6 TraesCS5D01G405100 chr5A 94.295 298 16 1 401 697 590851051 590850754 3.100000e-124 455.0
7 TraesCS5D01G405100 chr5A 80.693 404 63 11 67 462 409330979 409330583 1.540000e-77 300.0
8 TraesCS5D01G405100 chr5A 79.521 376 72 5 77 448 649252485 649252111 2.010000e-66 263.0
9 TraesCS5D01G405100 chr5A 74.330 448 77 19 5 429 662395272 662394840 3.520000e-34 156.0
10 TraesCS5D01G405100 chr5A 97.059 34 1 0 648 681 590850769 590850736 1.020000e-04 58.4
11 TraesCS5D01G405100 chr7B 82.073 357 59 5 90 443 104256316 104255962 1.540000e-77 300.0
12 TraesCS5D01G405100 chr1A 82.000 350 55 8 97 443 403148705 403148361 9.240000e-75 291.0
13 TraesCS5D01G405100 chr7A 80.049 406 63 12 22 410 711600651 711600247 4.300000e-73 285.0
14 TraesCS5D01G405100 chr1B 79.948 384 70 6 68 447 632773203 632772823 2.590000e-70 276.0
15 TraesCS5D01G405100 chr6B 80.000 360 67 5 91 447 707161579 707161222 7.250000e-66 261.0
16 TraesCS5D01G405100 chr4D 80.055 361 62 8 91 445 12416231 12415875 2.610000e-65 259.0
17 TraesCS5D01G405100 chr4D 78.684 380 70 9 68 444 502022662 502022291 2.620000e-60 243.0
18 TraesCS5D01G405100 chr4D 78.707 263 37 6 5 248 447993679 447993417 9.780000e-35 158.0
19 TraesCS5D01G405100 chr2D 79.944 354 65 6 97 448 157037696 157037347 3.370000e-64 255.0
20 TraesCS5D01G405100 chr2D 79.487 156 12 7 22 159 492018112 492017959 2.800000e-15 93.5
21 TraesCS5D01G405100 chr4A 77.672 421 71 10 5 402 19522770 19522350 4.390000e-58 235.0
22 TraesCS5D01G405100 chr6A 77.716 359 68 11 78 432 66271243 66270893 2.660000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G405100 chr5D 470047361 470049999 2638 True 4874.000000 4874 100.000000 1 2639 1 chr5D.!!$R1 2638
1 TraesCS5D01G405100 chr5B 577523074 577524967 1893 True 2577.000000 2577 91.309000 708 2623 1 chr5B.!!$R1 1915
2 TraesCS5D01G405100 chr5B 577530213 577531283 1070 True 713.000000 713 79.375000 812 1899 1 chr5B.!!$R2 1087
3 TraesCS5D01G405100 chr5A 590849386 590851051 1665 True 773.466667 1807 94.005667 401 2149 3 chr5A.!!$R5 1748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 0.032952 ACGTACGCACACTGTTGGAT 59.967 50.0 16.72 0.0 0.00 3.41 F
170 171 0.104304 GGGGCAGTATGTGTAGGACG 59.896 60.0 0.00 0.0 39.31 4.79 F
323 324 0.247185 CAGCCGGGTTGCATGAATTT 59.753 50.0 1.64 0.0 0.00 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 1605 0.038526 ATCGTCGCTTCGTCCTTGTT 60.039 50.000 0.0 0.0 0.0 2.83 R
1568 1608 1.153823 CCATCGTCGCTTCGTCCTT 60.154 57.895 0.0 0.0 0.0 3.36 R
1986 2047 1.450312 CCCACCATTCTCACGAGCC 60.450 63.158 0.0 0.0 0.0 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.115266 ACGTGGCAAAGGGGAAGG 59.885 61.111 0.00 0.00 0.00 3.46
18 19 2.115266 CGTGGCAAAGGGGAAGGT 59.885 61.111 0.00 0.00 0.00 3.50
19 20 1.971695 CGTGGCAAAGGGGAAGGTC 60.972 63.158 0.00 0.00 0.00 3.85
20 21 1.606601 GTGGCAAAGGGGAAGGTCC 60.607 63.158 0.00 0.00 35.23 4.46
21 22 1.778383 TGGCAAAGGGGAAGGTCCT 60.778 57.895 0.00 0.00 36.57 3.85
22 23 0.476808 TGGCAAAGGGGAAGGTCCTA 60.477 55.000 0.00 0.00 36.57 2.94
23 24 0.702316 GGCAAAGGGGAAGGTCCTAA 59.298 55.000 0.00 0.00 36.57 2.69
24 25 1.341089 GGCAAAGGGGAAGGTCCTAAG 60.341 57.143 0.00 0.00 36.57 2.18
25 26 1.354705 GCAAAGGGGAAGGTCCTAAGT 59.645 52.381 0.00 0.00 36.57 2.24
26 27 2.225041 GCAAAGGGGAAGGTCCTAAGTT 60.225 50.000 0.00 0.00 36.57 2.66
27 28 3.754172 GCAAAGGGGAAGGTCCTAAGTTT 60.754 47.826 0.00 0.00 36.57 2.66
28 29 4.480115 CAAAGGGGAAGGTCCTAAGTTTT 58.520 43.478 0.00 0.00 36.57 2.43
29 30 3.808834 AGGGGAAGGTCCTAAGTTTTG 57.191 47.619 0.00 0.00 36.57 2.44
30 31 2.168496 GGGGAAGGTCCTAAGTTTTGC 58.832 52.381 0.00 0.00 36.57 3.68
31 32 2.225041 GGGGAAGGTCCTAAGTTTTGCT 60.225 50.000 0.00 0.00 36.57 3.91
32 33 3.497332 GGGAAGGTCCTAAGTTTTGCTT 58.503 45.455 0.00 0.00 36.57 3.91
33 34 3.506455 GGGAAGGTCCTAAGTTTTGCTTC 59.494 47.826 0.00 0.00 36.57 3.86
34 35 4.399219 GGAAGGTCCTAAGTTTTGCTTCT 58.601 43.478 0.00 0.00 38.57 2.85
35 36 4.827835 GGAAGGTCCTAAGTTTTGCTTCTT 59.172 41.667 0.00 0.00 38.57 2.52
36 37 5.278512 GGAAGGTCCTAAGTTTTGCTTCTTG 60.279 44.000 0.00 0.00 38.57 3.02
37 38 3.570125 AGGTCCTAAGTTTTGCTTCTTGC 59.430 43.478 0.00 0.00 38.57 4.01
38 39 3.570125 GGTCCTAAGTTTTGCTTCTTGCT 59.430 43.478 0.00 0.00 43.37 3.91
39 40 4.320567 GGTCCTAAGTTTTGCTTCTTGCTC 60.321 45.833 0.00 0.00 43.37 4.26
40 41 4.275936 GTCCTAAGTTTTGCTTCTTGCTCA 59.724 41.667 0.00 0.00 43.37 4.26
41 42 4.887071 TCCTAAGTTTTGCTTCTTGCTCAA 59.113 37.500 0.00 0.00 43.37 3.02
42 43 4.978580 CCTAAGTTTTGCTTCTTGCTCAAC 59.021 41.667 0.00 0.00 43.37 3.18
43 44 4.725790 AAGTTTTGCTTCTTGCTCAACT 57.274 36.364 0.00 0.00 42.41 3.16
44 45 4.725790 AGTTTTGCTTCTTGCTCAACTT 57.274 36.364 0.00 0.00 39.75 2.66
45 46 4.427312 AGTTTTGCTTCTTGCTCAACTTG 58.573 39.130 0.00 0.00 39.75 3.16
46 47 4.082026 AGTTTTGCTTCTTGCTCAACTTGT 60.082 37.500 0.00 0.00 39.75 3.16
47 48 4.454728 TTTGCTTCTTGCTCAACTTGTT 57.545 36.364 0.00 0.00 43.37 2.83
48 49 4.454728 TTGCTTCTTGCTCAACTTGTTT 57.545 36.364 0.00 0.00 43.37 2.83
49 50 5.574891 TTGCTTCTTGCTCAACTTGTTTA 57.425 34.783 0.00 0.00 43.37 2.01
50 51 5.574891 TGCTTCTTGCTCAACTTGTTTAA 57.425 34.783 0.00 0.00 43.37 1.52
51 52 5.960113 TGCTTCTTGCTCAACTTGTTTAAA 58.040 33.333 0.00 0.00 43.37 1.52
52 53 6.572519 TGCTTCTTGCTCAACTTGTTTAAAT 58.427 32.000 0.00 0.00 43.37 1.40
53 54 6.697019 TGCTTCTTGCTCAACTTGTTTAAATC 59.303 34.615 0.00 0.00 43.37 2.17
54 55 6.697019 GCTTCTTGCTCAACTTGTTTAAATCA 59.303 34.615 0.00 0.00 38.95 2.57
55 56 7.383300 GCTTCTTGCTCAACTTGTTTAAATCAT 59.617 33.333 0.00 0.00 38.95 2.45
56 57 9.252962 CTTCTTGCTCAACTTGTTTAAATCATT 57.747 29.630 0.00 0.00 0.00 2.57
57 58 8.801715 TCTTGCTCAACTTGTTTAAATCATTC 57.198 30.769 0.00 0.00 0.00 2.67
58 59 8.412456 TCTTGCTCAACTTGTTTAAATCATTCA 58.588 29.630 0.00 0.00 0.00 2.57
59 60 9.199982 CTTGCTCAACTTGTTTAAATCATTCAT 57.800 29.630 0.00 0.00 0.00 2.57
60 61 9.545105 TTGCTCAACTTGTTTAAATCATTCATT 57.455 25.926 0.00 0.00 0.00 2.57
61 62 9.195411 TGCTCAACTTGTTTAAATCATTCATTC 57.805 29.630 0.00 0.00 0.00 2.67
62 63 9.415544 GCTCAACTTGTTTAAATCATTCATTCT 57.584 29.630 0.00 0.00 0.00 2.40
77 78 9.636879 ATCATTCATTCTCTCATATGTAGTTCG 57.363 33.333 1.90 0.00 0.00 3.95
78 79 7.596621 TCATTCATTCTCTCATATGTAGTTCGC 59.403 37.037 1.90 0.00 0.00 4.70
79 80 6.391227 TCATTCTCTCATATGTAGTTCGCA 57.609 37.500 1.90 0.00 0.00 5.10
80 81 6.209361 TCATTCTCTCATATGTAGTTCGCAC 58.791 40.000 1.90 0.00 0.00 5.34
81 82 4.210832 TCTCTCATATGTAGTTCGCACG 57.789 45.455 1.90 0.00 0.00 5.34
82 83 3.875134 TCTCTCATATGTAGTTCGCACGA 59.125 43.478 1.90 0.00 0.00 4.35
83 84 4.024809 TCTCTCATATGTAGTTCGCACGAG 60.025 45.833 1.90 0.00 0.00 4.18
84 85 3.626217 TCTCATATGTAGTTCGCACGAGT 59.374 43.478 1.90 0.00 0.00 4.18
85 86 4.095932 TCTCATATGTAGTTCGCACGAGTT 59.904 41.667 1.90 0.00 0.00 3.01
86 87 4.102649 TCATATGTAGTTCGCACGAGTTG 58.897 43.478 1.90 0.00 0.00 3.16
96 97 2.237416 CACGAGTTGCTGTGATGCA 58.763 52.632 0.00 0.00 41.65 3.96
97 98 0.110509 CACGAGTTGCTGTGATGCAC 60.111 55.000 0.00 0.00 43.20 4.57
98 99 1.230635 ACGAGTTGCTGTGATGCACC 61.231 55.000 0.00 0.00 43.20 5.01
99 100 1.229975 CGAGTTGCTGTGATGCACCA 61.230 55.000 0.00 0.00 43.20 4.17
100 101 0.239347 GAGTTGCTGTGATGCACCAC 59.761 55.000 3.48 3.48 43.20 4.16
101 102 0.466007 AGTTGCTGTGATGCACCACA 60.466 50.000 14.63 14.63 43.20 4.17
102 103 0.318107 GTTGCTGTGATGCACCACAC 60.318 55.000 10.72 11.41 43.20 3.82
103 104 1.784036 TTGCTGTGATGCACCACACG 61.784 55.000 10.72 8.03 43.20 4.49
104 105 1.960763 GCTGTGATGCACCACACGA 60.961 57.895 10.72 0.00 41.63 4.35
105 106 1.300971 GCTGTGATGCACCACACGAT 61.301 55.000 10.72 0.00 41.63 3.73
106 107 2.006552 GCTGTGATGCACCACACGATA 61.007 52.381 10.72 0.00 41.63 2.92
107 108 1.929169 CTGTGATGCACCACACGATAG 59.071 52.381 10.72 0.00 41.63 2.08
108 109 1.548269 TGTGATGCACCACACGATAGA 59.452 47.619 10.72 0.00 41.63 1.98
109 110 2.196749 GTGATGCACCACACGATAGAG 58.803 52.381 6.25 0.00 37.04 2.43
110 111 1.136891 TGATGCACCACACGATAGAGG 59.863 52.381 0.00 0.00 41.38 3.69
111 112 0.465705 ATGCACCACACGATAGAGGG 59.534 55.000 0.00 0.00 41.38 4.30
112 113 0.613572 TGCACCACACGATAGAGGGA 60.614 55.000 0.00 0.00 41.38 4.20
113 114 0.179108 GCACCACACGATAGAGGGAC 60.179 60.000 0.00 0.00 41.38 4.46
114 115 0.100682 CACCACACGATAGAGGGACG 59.899 60.000 0.00 0.00 41.38 4.79
115 116 1.035932 ACCACACGATAGAGGGACGG 61.036 60.000 0.00 0.00 41.38 4.79
116 117 1.065928 CACACGATAGAGGGACGGC 59.934 63.158 0.00 0.00 41.38 5.68
117 118 2.125961 ACACGATAGAGGGACGGCC 61.126 63.158 0.00 0.00 41.38 6.13
118 119 2.125326 CACGATAGAGGGACGGCCA 61.125 63.158 11.00 0.00 41.38 5.36
119 120 1.152525 ACGATAGAGGGACGGCCAT 60.153 57.895 11.00 0.00 41.38 4.40
120 121 0.759436 ACGATAGAGGGACGGCCATT 60.759 55.000 11.00 0.00 41.38 3.16
121 122 0.393077 CGATAGAGGGACGGCCATTT 59.607 55.000 11.00 0.00 39.76 2.32
122 123 1.616865 CGATAGAGGGACGGCCATTTA 59.383 52.381 11.00 0.35 39.76 1.40
123 124 2.609737 CGATAGAGGGACGGCCATTTAC 60.610 54.545 11.00 0.00 39.76 2.01
124 125 0.748450 TAGAGGGACGGCCATTTACG 59.252 55.000 11.00 0.00 35.15 3.18
126 127 0.461135 GAGGGACGGCCATTTACGTA 59.539 55.000 11.00 0.00 44.24 3.57
127 128 0.176449 AGGGACGGCCATTTACGTAC 59.824 55.000 11.00 0.00 44.24 3.67
128 129 1.147557 GGGACGGCCATTTACGTACG 61.148 60.000 11.00 15.01 44.59 3.67
129 130 1.632645 GACGGCCATTTACGTACGC 59.367 57.895 16.72 0.00 44.24 4.42
130 131 1.077645 GACGGCCATTTACGTACGCA 61.078 55.000 16.72 0.00 44.24 5.24
131 132 1.345856 CGGCCATTTACGTACGCAC 59.654 57.895 16.72 0.00 0.00 5.34
132 133 1.352882 CGGCCATTTACGTACGCACA 61.353 55.000 16.72 0.00 0.00 4.57
133 134 0.095762 GGCCATTTACGTACGCACAC 59.904 55.000 16.72 0.00 0.00 3.82
134 135 1.073177 GCCATTTACGTACGCACACT 58.927 50.000 16.72 0.00 0.00 3.55
135 136 1.201877 GCCATTTACGTACGCACACTG 60.202 52.381 16.72 6.81 0.00 3.66
136 137 2.063266 CCATTTACGTACGCACACTGT 58.937 47.619 16.72 0.00 0.00 3.55
137 138 2.477375 CCATTTACGTACGCACACTGTT 59.523 45.455 16.72 0.00 0.00 3.16
138 139 3.465907 CATTTACGTACGCACACTGTTG 58.534 45.455 16.72 0.00 0.00 3.33
139 140 1.489574 TTACGTACGCACACTGTTGG 58.510 50.000 16.72 0.00 0.00 3.77
140 141 0.667453 TACGTACGCACACTGTTGGA 59.333 50.000 16.72 0.00 0.00 3.53
141 142 0.032952 ACGTACGCACACTGTTGGAT 59.967 50.000 16.72 0.00 0.00 3.41
142 143 0.438445 CGTACGCACACTGTTGGATG 59.562 55.000 0.52 0.00 0.00 3.51
143 144 1.790755 GTACGCACACTGTTGGATGA 58.209 50.000 0.00 0.00 0.00 2.92
144 145 2.139917 GTACGCACACTGTTGGATGAA 58.860 47.619 0.00 0.00 0.00 2.57
145 146 1.674359 ACGCACACTGTTGGATGAAA 58.326 45.000 0.00 0.00 0.00 2.69
146 147 1.333619 ACGCACACTGTTGGATGAAAC 59.666 47.619 0.00 0.00 0.00 2.78
147 148 1.334960 CGCACACTGTTGGATGAAACC 60.335 52.381 0.00 0.00 0.00 3.27
148 149 1.680735 GCACACTGTTGGATGAAACCA 59.319 47.619 0.00 0.00 38.24 3.67
149 150 2.100584 GCACACTGTTGGATGAAACCAA 59.899 45.455 0.00 0.00 46.02 3.67
155 156 1.347062 TTGGATGAAACCAAAGGGGC 58.653 50.000 0.00 0.00 45.36 5.80
156 157 0.189574 TGGATGAAACCAAAGGGGCA 59.810 50.000 0.00 0.00 42.05 5.36
157 158 0.897621 GGATGAAACCAAAGGGGCAG 59.102 55.000 0.00 0.00 42.05 4.85
158 159 1.632589 GATGAAACCAAAGGGGCAGT 58.367 50.000 0.00 0.00 42.05 4.40
159 160 2.556559 GGATGAAACCAAAGGGGCAGTA 60.557 50.000 0.00 0.00 42.05 2.74
160 161 2.990740 TGAAACCAAAGGGGCAGTAT 57.009 45.000 0.00 0.00 42.05 2.12
161 162 2.524306 TGAAACCAAAGGGGCAGTATG 58.476 47.619 0.00 0.00 42.05 2.39
162 163 2.158385 TGAAACCAAAGGGGCAGTATGT 60.158 45.455 0.00 0.00 42.05 2.29
163 164 1.923356 AACCAAAGGGGCAGTATGTG 58.077 50.000 0.00 0.00 42.05 3.21
164 165 0.777446 ACCAAAGGGGCAGTATGTGT 59.223 50.000 0.00 0.00 42.05 3.72
165 166 1.989586 ACCAAAGGGGCAGTATGTGTA 59.010 47.619 0.00 0.00 42.05 2.90
166 167 2.026262 ACCAAAGGGGCAGTATGTGTAG 60.026 50.000 0.00 0.00 42.05 2.74
167 168 2.643551 CAAAGGGGCAGTATGTGTAGG 58.356 52.381 0.00 0.00 39.31 3.18
168 169 2.238646 CAAAGGGGCAGTATGTGTAGGA 59.761 50.000 0.00 0.00 39.31 2.94
169 170 1.497161 AGGGGCAGTATGTGTAGGAC 58.503 55.000 0.00 0.00 39.31 3.85
170 171 0.104304 GGGGCAGTATGTGTAGGACG 59.896 60.000 0.00 0.00 39.31 4.79
171 172 1.108776 GGGCAGTATGTGTAGGACGA 58.891 55.000 0.00 0.00 39.31 4.20
172 173 1.202382 GGGCAGTATGTGTAGGACGAC 60.202 57.143 0.00 0.00 39.31 4.34
173 174 1.475280 GGCAGTATGTGTAGGACGACA 59.525 52.381 0.00 0.00 39.31 4.35
174 175 2.100916 GGCAGTATGTGTAGGACGACAT 59.899 50.000 0.00 0.00 39.31 3.06
175 176 3.116300 GCAGTATGTGTAGGACGACATG 58.884 50.000 0.00 0.00 39.31 3.21
176 177 3.181490 GCAGTATGTGTAGGACGACATGA 60.181 47.826 0.00 0.00 39.31 3.07
177 178 4.499865 GCAGTATGTGTAGGACGACATGAT 60.500 45.833 0.00 0.00 39.31 2.45
178 179 5.215903 CAGTATGTGTAGGACGACATGATC 58.784 45.833 0.00 0.00 34.60 2.92
179 180 3.735237 ATGTGTAGGACGACATGATCC 57.265 47.619 0.00 3.35 31.47 3.36
180 181 1.404035 TGTGTAGGACGACATGATCCG 59.596 52.381 0.00 2.36 40.20 4.18
181 182 1.404391 GTGTAGGACGACATGATCCGT 59.596 52.381 0.00 5.96 40.20 4.69
182 183 2.097036 TGTAGGACGACATGATCCGTT 58.903 47.619 0.00 0.00 40.20 4.44
183 184 2.159296 TGTAGGACGACATGATCCGTTG 60.159 50.000 0.00 0.00 40.20 4.10
184 185 1.182667 AGGACGACATGATCCGTTGA 58.817 50.000 0.00 0.00 40.20 3.18
185 186 1.757118 AGGACGACATGATCCGTTGAT 59.243 47.619 0.00 0.00 40.20 2.57
186 187 1.860950 GGACGACATGATCCGTTGATG 59.139 52.381 0.00 0.00 39.30 3.07
187 188 2.481276 GGACGACATGATCCGTTGATGA 60.481 50.000 0.00 0.00 39.30 2.92
188 189 3.186909 GACGACATGATCCGTTGATGAA 58.813 45.455 0.00 0.00 39.30 2.57
189 190 3.595173 ACGACATGATCCGTTGATGAAA 58.405 40.909 0.00 0.00 35.21 2.69
190 191 4.191544 ACGACATGATCCGTTGATGAAAT 58.808 39.130 0.00 0.00 35.21 2.17
191 192 5.356426 ACGACATGATCCGTTGATGAAATA 58.644 37.500 0.00 0.00 35.21 1.40
192 193 5.234329 ACGACATGATCCGTTGATGAAATAC 59.766 40.000 0.00 0.00 35.21 1.89
193 194 5.463392 CGACATGATCCGTTGATGAAATACT 59.537 40.000 0.00 0.00 0.00 2.12
194 195 6.018751 CGACATGATCCGTTGATGAAATACTT 60.019 38.462 0.00 0.00 0.00 2.24
195 196 7.019774 ACATGATCCGTTGATGAAATACTTG 57.980 36.000 0.00 0.00 0.00 3.16
196 197 6.599244 ACATGATCCGTTGATGAAATACTTGT 59.401 34.615 0.00 0.00 0.00 3.16
197 198 7.121168 ACATGATCCGTTGATGAAATACTTGTT 59.879 33.333 0.00 0.00 0.00 2.83
198 199 6.841119 TGATCCGTTGATGAAATACTTGTTG 58.159 36.000 0.00 0.00 0.00 3.33
199 200 5.621197 TCCGTTGATGAAATACTTGTTGG 57.379 39.130 0.00 0.00 0.00 3.77
200 201 5.309638 TCCGTTGATGAAATACTTGTTGGA 58.690 37.500 0.00 0.00 0.00 3.53
201 202 5.180492 TCCGTTGATGAAATACTTGTTGGAC 59.820 40.000 0.00 0.00 0.00 4.02
202 203 5.049060 CCGTTGATGAAATACTTGTTGGACA 60.049 40.000 0.00 0.00 0.00 4.02
203 204 6.349280 CCGTTGATGAAATACTTGTTGGACAT 60.349 38.462 0.00 0.00 0.00 3.06
204 205 6.742718 CGTTGATGAAATACTTGTTGGACATC 59.257 38.462 0.00 0.00 35.13 3.06
205 206 7.361201 CGTTGATGAAATACTTGTTGGACATCT 60.361 37.037 0.00 0.00 35.45 2.90
206 207 7.381766 TGATGAAATACTTGTTGGACATCTG 57.618 36.000 0.00 0.00 35.45 2.90
207 208 6.375174 TGATGAAATACTTGTTGGACATCTGG 59.625 38.462 0.00 0.00 35.45 3.86
208 209 5.630121 TGAAATACTTGTTGGACATCTGGT 58.370 37.500 0.00 0.00 0.00 4.00
209 210 6.068010 TGAAATACTTGTTGGACATCTGGTT 58.932 36.000 0.00 0.00 0.00 3.67
210 211 7.227873 TGAAATACTTGTTGGACATCTGGTTA 58.772 34.615 0.00 0.00 0.00 2.85
211 212 7.721842 TGAAATACTTGTTGGACATCTGGTTAA 59.278 33.333 0.00 0.00 0.00 2.01
212 213 8.650143 AAATACTTGTTGGACATCTGGTTAAT 57.350 30.769 0.00 0.00 0.00 1.40
213 214 7.865706 ATACTTGTTGGACATCTGGTTAATC 57.134 36.000 0.00 0.00 0.00 1.75
214 215 5.880901 ACTTGTTGGACATCTGGTTAATCT 58.119 37.500 0.00 0.00 0.00 2.40
215 216 5.940470 ACTTGTTGGACATCTGGTTAATCTC 59.060 40.000 0.00 0.00 0.00 2.75
216 217 5.497464 TGTTGGACATCTGGTTAATCTCA 57.503 39.130 0.00 0.00 0.00 3.27
217 218 6.065976 TGTTGGACATCTGGTTAATCTCAT 57.934 37.500 0.00 0.00 0.00 2.90
218 219 6.115446 TGTTGGACATCTGGTTAATCTCATC 58.885 40.000 0.00 0.00 0.00 2.92
219 220 5.955961 TGGACATCTGGTTAATCTCATCA 57.044 39.130 0.00 0.00 0.00 3.07
220 221 6.312141 TGGACATCTGGTTAATCTCATCAA 57.688 37.500 0.00 0.00 0.00 2.57
221 222 6.720309 TGGACATCTGGTTAATCTCATCAAA 58.280 36.000 0.00 0.00 0.00 2.69
222 223 7.348815 TGGACATCTGGTTAATCTCATCAAAT 58.651 34.615 0.00 0.00 0.00 2.32
223 224 7.835682 TGGACATCTGGTTAATCTCATCAAATT 59.164 33.333 0.00 0.00 0.00 1.82
224 225 8.689972 GGACATCTGGTTAATCTCATCAAATTT 58.310 33.333 0.00 0.00 0.00 1.82
225 226 9.512435 GACATCTGGTTAATCTCATCAAATTTG 57.488 33.333 12.15 12.15 0.00 2.32
226 227 9.246670 ACATCTGGTTAATCTCATCAAATTTGA 57.753 29.630 22.52 22.52 42.14 2.69
227 228 9.731819 CATCTGGTTAATCTCATCAAATTTGAG 57.268 33.333 24.17 16.29 41.08 3.02
237 238 7.944061 TCTCATCAAATTTGAGACATTGTTGT 58.056 30.769 24.17 2.71 43.49 3.32
238 239 9.065798 TCTCATCAAATTTGAGACATTGTTGTA 57.934 29.630 24.17 7.23 43.49 2.41
239 240 9.121517 CTCATCAAATTTGAGACATTGTTGTAC 57.878 33.333 24.17 0.00 42.63 2.90
240 241 8.849168 TCATCAAATTTGAGACATTGTTGTACT 58.151 29.630 24.17 1.60 41.08 2.73
243 244 9.554395 TCAAATTTGAGACATTGTTGTACTAGA 57.446 29.630 16.91 0.00 31.65 2.43
244 245 9.599322 CAAATTTGAGACATTGTTGTACTAGAC 57.401 33.333 13.08 0.00 35.79 2.59
245 246 9.561069 AAATTTGAGACATTGTTGTACTAGACT 57.439 29.630 0.00 0.00 35.79 3.24
246 247 9.561069 AATTTGAGACATTGTTGTACTAGACTT 57.439 29.630 0.00 0.00 35.79 3.01
252 253 9.998106 AGACATTGTTGTACTAGACTTATTTGT 57.002 29.630 0.00 0.00 35.79 2.83
254 255 9.555727 ACATTGTTGTACTAGACTTATTTGTGT 57.444 29.630 0.00 0.00 33.16 3.72
255 256 9.811655 CATTGTTGTACTAGACTTATTTGTGTG 57.188 33.333 0.00 0.00 0.00 3.82
256 257 7.416154 TGTTGTACTAGACTTATTTGTGTGC 57.584 36.000 0.00 0.00 0.00 4.57
257 258 7.214381 TGTTGTACTAGACTTATTTGTGTGCT 58.786 34.615 0.00 0.00 0.00 4.40
258 259 8.361889 TGTTGTACTAGACTTATTTGTGTGCTA 58.638 33.333 0.00 0.00 0.00 3.49
259 260 9.367444 GTTGTACTAGACTTATTTGTGTGCTAT 57.633 33.333 0.00 0.00 0.00 2.97
260 261 8.926715 TGTACTAGACTTATTTGTGTGCTATG 57.073 34.615 0.00 0.00 0.00 2.23
261 262 8.528643 TGTACTAGACTTATTTGTGTGCTATGT 58.471 33.333 0.00 0.00 0.00 2.29
264 265 9.534565 ACTAGACTTATTTGTGTGCTATGTATG 57.465 33.333 0.00 0.00 0.00 2.39
265 266 7.792374 AGACTTATTTGTGTGCTATGTATGG 57.208 36.000 0.00 0.00 0.00 2.74
266 267 7.564793 AGACTTATTTGTGTGCTATGTATGGA 58.435 34.615 0.00 0.00 0.00 3.41
267 268 8.213679 AGACTTATTTGTGTGCTATGTATGGAT 58.786 33.333 0.00 0.00 0.00 3.41
268 269 8.158169 ACTTATTTGTGTGCTATGTATGGATG 57.842 34.615 0.00 0.00 0.00 3.51
269 270 7.775093 ACTTATTTGTGTGCTATGTATGGATGT 59.225 33.333 0.00 0.00 0.00 3.06
270 271 8.518430 TTATTTGTGTGCTATGTATGGATGTT 57.482 30.769 0.00 0.00 0.00 2.71
271 272 6.832520 TTTGTGTGCTATGTATGGATGTTT 57.167 33.333 0.00 0.00 0.00 2.83
272 273 6.832520 TTGTGTGCTATGTATGGATGTTTT 57.167 33.333 0.00 0.00 0.00 2.43
273 274 6.832520 TGTGTGCTATGTATGGATGTTTTT 57.167 33.333 0.00 0.00 0.00 1.94
274 275 6.619744 TGTGTGCTATGTATGGATGTTTTTG 58.380 36.000 0.00 0.00 0.00 2.44
275 276 5.516339 GTGTGCTATGTATGGATGTTTTTGC 59.484 40.000 0.00 0.00 0.00 3.68
276 277 5.418524 TGTGCTATGTATGGATGTTTTTGCT 59.581 36.000 0.00 0.00 0.00 3.91
277 278 6.601217 TGTGCTATGTATGGATGTTTTTGCTA 59.399 34.615 0.00 0.00 0.00 3.49
278 279 7.285172 TGTGCTATGTATGGATGTTTTTGCTAT 59.715 33.333 0.00 0.00 0.00 2.97
279 280 8.137437 GTGCTATGTATGGATGTTTTTGCTATT 58.863 33.333 0.00 0.00 0.00 1.73
280 281 8.694540 TGCTATGTATGGATGTTTTTGCTATTT 58.305 29.630 0.00 0.00 0.00 1.40
281 282 9.533253 GCTATGTATGGATGTTTTTGCTATTTT 57.467 29.630 0.00 0.00 0.00 1.82
308 309 9.674824 CTATTGAAACTTTCATGAATATCAGCC 57.325 33.333 9.40 0.00 39.84 4.85
309 310 6.122850 TGAAACTTTCATGAATATCAGCCG 57.877 37.500 9.40 0.00 34.08 5.52
310 311 5.066375 TGAAACTTTCATGAATATCAGCCGG 59.934 40.000 9.40 0.00 34.08 6.13
311 312 3.480470 ACTTTCATGAATATCAGCCGGG 58.520 45.455 9.40 0.00 0.00 5.73
312 313 3.117888 ACTTTCATGAATATCAGCCGGGT 60.118 43.478 9.40 0.00 0.00 5.28
313 314 3.576078 TTCATGAATATCAGCCGGGTT 57.424 42.857 1.64 0.00 0.00 4.11
314 315 2.849942 TCATGAATATCAGCCGGGTTG 58.150 47.619 1.64 4.25 0.00 3.77
315 316 1.267806 CATGAATATCAGCCGGGTTGC 59.732 52.381 1.64 0.00 0.00 4.17
316 317 0.254462 TGAATATCAGCCGGGTTGCA 59.746 50.000 1.64 0.00 0.00 4.08
317 318 1.133823 TGAATATCAGCCGGGTTGCAT 60.134 47.619 1.64 0.00 0.00 3.96
318 319 1.267806 GAATATCAGCCGGGTTGCATG 59.732 52.381 1.64 0.00 0.00 4.06
319 320 0.473755 ATATCAGCCGGGTTGCATGA 59.526 50.000 1.64 0.00 0.00 3.07
320 321 0.254462 TATCAGCCGGGTTGCATGAA 59.746 50.000 1.64 0.00 0.00 2.57
321 322 0.396139 ATCAGCCGGGTTGCATGAAT 60.396 50.000 1.64 0.00 0.00 2.57
322 323 0.611618 TCAGCCGGGTTGCATGAATT 60.612 50.000 1.64 0.00 0.00 2.17
323 324 0.247185 CAGCCGGGTTGCATGAATTT 59.753 50.000 1.64 0.00 0.00 1.82
324 325 0.247185 AGCCGGGTTGCATGAATTTG 59.753 50.000 0.00 0.00 0.00 2.32
325 326 0.740516 GCCGGGTTGCATGAATTTGG 60.741 55.000 2.18 0.00 0.00 3.28
326 327 0.607620 CCGGGTTGCATGAATTTGGT 59.392 50.000 0.00 0.00 0.00 3.67
327 328 1.404047 CCGGGTTGCATGAATTTGGTC 60.404 52.381 0.00 0.00 0.00 4.02
328 329 1.404047 CGGGTTGCATGAATTTGGTCC 60.404 52.381 0.00 0.00 0.00 4.46
329 330 1.404047 GGGTTGCATGAATTTGGTCCG 60.404 52.381 0.00 0.00 0.00 4.79
330 331 1.349234 GTTGCATGAATTTGGTCCGC 58.651 50.000 0.00 0.00 0.00 5.54
331 332 1.067635 GTTGCATGAATTTGGTCCGCT 60.068 47.619 0.00 0.00 0.00 5.52
332 333 1.255882 TGCATGAATTTGGTCCGCTT 58.744 45.000 0.00 0.00 0.00 4.68
333 334 2.441410 TGCATGAATTTGGTCCGCTTA 58.559 42.857 0.00 0.00 0.00 3.09
334 335 2.423185 TGCATGAATTTGGTCCGCTTAG 59.577 45.455 0.00 0.00 0.00 2.18
335 336 2.423538 GCATGAATTTGGTCCGCTTAGT 59.576 45.455 0.00 0.00 0.00 2.24
336 337 3.119495 GCATGAATTTGGTCCGCTTAGTT 60.119 43.478 0.00 0.00 0.00 2.24
337 338 4.618227 GCATGAATTTGGTCCGCTTAGTTT 60.618 41.667 0.00 0.00 0.00 2.66
338 339 4.497473 TGAATTTGGTCCGCTTAGTTTG 57.503 40.909 0.00 0.00 0.00 2.93
339 340 4.138290 TGAATTTGGTCCGCTTAGTTTGA 58.862 39.130 0.00 0.00 0.00 2.69
340 341 4.580995 TGAATTTGGTCCGCTTAGTTTGAA 59.419 37.500 0.00 0.00 0.00 2.69
341 342 5.242838 TGAATTTGGTCCGCTTAGTTTGAAT 59.757 36.000 0.00 0.00 0.00 2.57
342 343 4.759516 TTTGGTCCGCTTAGTTTGAATC 57.240 40.909 0.00 0.00 0.00 2.52
343 344 3.410631 TGGTCCGCTTAGTTTGAATCA 57.589 42.857 0.00 0.00 0.00 2.57
344 345 3.950397 TGGTCCGCTTAGTTTGAATCAT 58.050 40.909 0.00 0.00 0.00 2.45
345 346 3.689161 TGGTCCGCTTAGTTTGAATCATG 59.311 43.478 0.00 0.00 0.00 3.07
346 347 3.065371 GGTCCGCTTAGTTTGAATCATGG 59.935 47.826 0.00 0.00 0.00 3.66
347 348 3.689649 GTCCGCTTAGTTTGAATCATGGT 59.310 43.478 0.00 0.00 0.00 3.55
348 349 4.156008 GTCCGCTTAGTTTGAATCATGGTT 59.844 41.667 0.00 0.00 0.00 3.67
349 350 4.394920 TCCGCTTAGTTTGAATCATGGTTC 59.605 41.667 11.99 11.99 0.00 3.62
350 351 4.155826 CCGCTTAGTTTGAATCATGGTTCA 59.844 41.667 17.53 17.53 36.38 3.18
351 352 5.335583 CCGCTTAGTTTGAATCATGGTTCAA 60.336 40.000 26.58 26.58 44.05 2.69
359 360 4.980590 TGAATCATGGTTCAAACGTATGC 58.019 39.130 19.07 0.00 35.31 3.14
360 361 3.673746 ATCATGGTTCAAACGTATGCG 57.326 42.857 0.19 0.19 44.93 4.73
361 362 1.735018 TCATGGTTCAAACGTATGCGG 59.265 47.619 8.39 0.00 43.45 5.69
362 363 1.735018 CATGGTTCAAACGTATGCGGA 59.265 47.619 8.39 0.00 43.45 5.54
363 364 1.149987 TGGTTCAAACGTATGCGGAC 58.850 50.000 8.39 0.00 43.45 4.79
364 365 1.149987 GGTTCAAACGTATGCGGACA 58.850 50.000 8.39 0.00 43.45 4.02
365 366 1.127951 GGTTCAAACGTATGCGGACAG 59.872 52.381 8.39 0.00 43.45 3.51
375 376 2.434185 GCGGACAGCGTTGGATGA 60.434 61.111 3.74 0.00 35.41 2.92
376 377 2.740714 GCGGACAGCGTTGGATGAC 61.741 63.158 3.74 0.00 35.41 3.06
377 378 2.444624 CGGACAGCGTTGGATGACG 61.445 63.158 3.74 0.00 45.40 4.35
378 379 1.080093 GGACAGCGTTGGATGACGA 60.080 57.895 3.74 0.00 45.47 4.20
379 380 1.352156 GGACAGCGTTGGATGACGAC 61.352 60.000 3.74 0.00 45.47 4.34
380 381 1.352156 GACAGCGTTGGATGACGACC 61.352 60.000 3.74 0.00 45.47 4.79
381 382 1.079819 CAGCGTTGGATGACGACCT 60.080 57.895 1.15 0.00 45.47 3.85
382 383 0.670546 CAGCGTTGGATGACGACCTT 60.671 55.000 1.15 0.00 45.47 3.50
383 384 0.389948 AGCGTTGGATGACGACCTTC 60.390 55.000 1.15 0.00 45.47 3.46
384 385 0.669318 GCGTTGGATGACGACCTTCA 60.669 55.000 1.15 0.00 45.47 3.02
385 386 1.350193 CGTTGGATGACGACCTTCAG 58.650 55.000 0.00 0.00 45.47 3.02
386 387 1.079503 GTTGGATGACGACCTTCAGC 58.920 55.000 0.00 0.00 0.00 4.26
387 388 0.684535 TTGGATGACGACCTTCAGCA 59.315 50.000 0.00 0.00 33.36 4.41
388 389 0.904649 TGGATGACGACCTTCAGCAT 59.095 50.000 0.00 0.00 33.36 3.79
389 390 1.134699 TGGATGACGACCTTCAGCATC 60.135 52.381 0.00 0.00 33.36 3.91
390 391 1.134699 GGATGACGACCTTCAGCATCA 60.135 52.381 0.00 0.00 37.63 3.07
391 392 2.200067 GATGACGACCTTCAGCATCAG 58.800 52.381 0.00 0.00 36.32 2.90
392 393 0.969149 TGACGACCTTCAGCATCAGT 59.031 50.000 0.00 0.00 0.00 3.41
393 394 1.337167 TGACGACCTTCAGCATCAGTG 60.337 52.381 0.00 0.00 0.00 3.66
394 395 0.681733 ACGACCTTCAGCATCAGTGT 59.318 50.000 0.00 0.00 0.00 3.55
395 396 1.337260 ACGACCTTCAGCATCAGTGTC 60.337 52.381 0.00 0.00 0.00 3.67
396 397 1.067283 CGACCTTCAGCATCAGTGTCT 60.067 52.381 0.00 0.00 0.00 3.41
397 398 2.164422 CGACCTTCAGCATCAGTGTCTA 59.836 50.000 0.00 0.00 0.00 2.59
398 399 3.181482 CGACCTTCAGCATCAGTGTCTAT 60.181 47.826 0.00 0.00 0.00 1.98
399 400 4.118410 GACCTTCAGCATCAGTGTCTATG 58.882 47.826 0.00 0.00 0.00 2.23
400 401 3.118482 ACCTTCAGCATCAGTGTCTATGG 60.118 47.826 0.00 0.00 0.00 2.74
401 402 3.133542 CCTTCAGCATCAGTGTCTATGGA 59.866 47.826 0.00 0.00 0.00 3.41
402 403 3.808466 TCAGCATCAGTGTCTATGGAC 57.192 47.619 1.56 1.56 42.42 4.02
403 404 3.369175 TCAGCATCAGTGTCTATGGACT 58.631 45.455 10.82 0.00 42.54 3.85
416 417 3.715015 GGACTGGTCCCTCTGTCC 58.285 66.667 8.48 5.42 44.46 4.02
417 418 2.352032 GGACTGGTCCCTCTGTCCG 61.352 68.421 8.48 0.00 42.80 4.79
435 436 2.835431 AGGACGGATGCGAGAGGG 60.835 66.667 15.49 0.00 0.00 4.30
442 443 0.665298 GGATGCGAGAGGGAATTTGC 59.335 55.000 0.00 0.00 0.00 3.68
444 445 0.392998 ATGCGAGAGGGAATTTGCGT 60.393 50.000 0.00 0.00 0.00 5.24
450 452 1.613437 AGAGGGAATTTGCGTGTTTGG 59.387 47.619 0.00 0.00 0.00 3.28
517 519 4.566360 GGCACGCAACTGCATTAAATAAAT 59.434 37.500 2.12 0.00 42.21 1.40
537 539 6.530019 AAATTAATCAAGCGGTGGAGAAAT 57.470 33.333 0.00 0.00 0.00 2.17
580 582 9.959749 AATAACATCTAAATCGTTTTGTTGTGT 57.040 25.926 1.69 0.09 31.84 3.72
659 661 4.040217 AGCCATATGTTCAACCAAAAGCAA 59.960 37.500 1.24 0.00 0.00 3.91
697 699 3.624326 TCGACAACCAAAAGCAATCTG 57.376 42.857 0.00 0.00 0.00 2.90
698 700 2.293122 TCGACAACCAAAAGCAATCTGG 59.707 45.455 0.00 0.00 36.24 3.86
699 701 2.293122 CGACAACCAAAAGCAATCTGGA 59.707 45.455 1.63 0.00 34.16 3.86
700 702 3.057315 CGACAACCAAAAGCAATCTGGAT 60.057 43.478 1.63 0.00 34.16 3.41
701 703 4.155826 CGACAACCAAAAGCAATCTGGATA 59.844 41.667 1.63 0.00 34.16 2.59
702 704 5.644644 GACAACCAAAAGCAATCTGGATAG 58.355 41.667 1.63 0.00 34.16 2.08
703 705 5.324409 ACAACCAAAAGCAATCTGGATAGA 58.676 37.500 1.63 0.00 37.35 1.98
704 706 5.954150 ACAACCAAAAGCAATCTGGATAGAT 59.046 36.000 1.63 0.00 45.51 1.98
705 707 6.096001 ACAACCAAAAGCAATCTGGATAGATC 59.904 38.462 1.63 0.00 42.80 2.75
706 708 5.759059 ACCAAAAGCAATCTGGATAGATCA 58.241 37.500 0.00 0.00 42.80 2.92
734 736 9.397280 CGTTGGTAATCTATCTAGATCTATCCA 57.603 37.037 8.95 8.95 41.96 3.41
778 780 4.210120 GCGTTGGTCTAGATAGATTGCTTG 59.790 45.833 0.00 0.00 34.39 4.01
946 955 1.721133 GCACGTTTCGTTTGGAGCG 60.721 57.895 0.00 0.00 38.32 5.03
957 966 1.098869 TTTGGAGCGAGCAACAACAA 58.901 45.000 0.00 0.00 0.00 2.83
972 981 3.423154 CAAACACCGAGGCCGCTC 61.423 66.667 4.53 0.00 0.00 5.03
973 982 3.626924 AAACACCGAGGCCGCTCT 61.627 61.111 4.53 0.00 0.00 4.09
974 983 3.591254 AAACACCGAGGCCGCTCTC 62.591 63.158 4.53 0.00 0.00 3.20
976 985 4.504916 CACCGAGGCCGCTCTCTG 62.505 72.222 4.53 0.00 0.00 3.35
977 986 4.742649 ACCGAGGCCGCTCTCTGA 62.743 66.667 4.53 0.00 0.00 3.27
981 990 3.119709 GAGGCCGCTCTCTGACTCG 62.120 68.421 0.00 0.00 0.00 4.18
1565 1605 2.691771 GCGAGAGAGACGTGCAGGA 61.692 63.158 14.38 0.00 0.00 3.86
1568 1608 0.598562 GAGAGAGACGTGCAGGAACA 59.401 55.000 14.38 0.00 0.00 3.18
1698 1755 4.280677 TGGACCAAAGTCAAATGATGTTCC 59.719 41.667 0.00 0.00 45.48 3.62
1944 2005 5.796935 CGCATGAAATACTTCAACTCCTTTG 59.203 40.000 0.00 0.00 44.64 2.77
1986 2047 7.067372 ACACCATTCCAGAAATGTATGTACATG 59.933 37.037 18.81 0.06 45.55 3.21
2173 2236 7.731054 AGTATGAACAGACATCCCTCTATTTC 58.269 38.462 2.58 0.00 0.00 2.17
2220 2283 5.904362 ATTCTCTTGAAGAAATTTCCCCG 57.096 39.130 14.61 0.14 46.85 5.73
2352 2415 5.544650 AGCCATGAAAACTGAAAAGGATTG 58.455 37.500 0.00 0.00 0.00 2.67
2355 2418 7.178983 AGCCATGAAAACTGAAAAGGATTGATA 59.821 33.333 0.00 0.00 0.00 2.15
2391 2454 2.165030 GTGGATGTGGAAAGGCTCATTG 59.835 50.000 0.00 0.00 0.00 2.82
2407 2470 5.106555 GGCTCATTGGTTGTCATATAATCCG 60.107 44.000 0.00 0.00 0.00 4.18
2430 2493 6.144854 CGCCATAATGTGAAACCAATATGAG 58.855 40.000 0.00 0.00 34.36 2.90
2443 2506 9.346725 GAAACCAATATGAGACTTGTTGATTTC 57.653 33.333 0.00 0.00 0.00 2.17
2456 2519 7.035612 ACTTGTTGATTTCTGTTTGTTTCCTC 58.964 34.615 0.00 0.00 0.00 3.71
2473 2536 6.992715 TGTTTCCTCTAGAGAAGGACAAAAAG 59.007 38.462 21.76 0.00 0.00 2.27
2474 2537 6.996180 TTCCTCTAGAGAAGGACAAAAAGA 57.004 37.500 21.76 2.22 0.00 2.52
2476 2539 7.374975 TCCTCTAGAGAAGGACAAAAAGAAA 57.625 36.000 21.76 0.00 0.00 2.52
2479 2542 7.174080 CCTCTAGAGAAGGACAAAAAGAAAAGG 59.826 40.741 21.76 0.00 0.00 3.11
2480 2543 7.802117 TCTAGAGAAGGACAAAAAGAAAAGGA 58.198 34.615 0.00 0.00 0.00 3.36
2481 2544 6.951062 AGAGAAGGACAAAAAGAAAAGGAG 57.049 37.500 0.00 0.00 0.00 3.69
2482 2545 6.663734 AGAGAAGGACAAAAAGAAAAGGAGA 58.336 36.000 0.00 0.00 0.00 3.71
2483 2546 6.544197 AGAGAAGGACAAAAAGAAAAGGAGAC 59.456 38.462 0.00 0.00 0.00 3.36
2484 2547 6.187682 AGAAGGACAAAAAGAAAAGGAGACA 58.812 36.000 0.00 0.00 0.00 3.41
2485 2548 6.836007 AGAAGGACAAAAAGAAAAGGAGACAT 59.164 34.615 0.00 0.00 0.00 3.06
2499 2571 2.125147 ACATGGATCCACGCACGG 60.125 61.111 18.99 5.25 0.00 4.94
2531 2603 3.487372 GGTCTGGCCCATAAATTAGGTC 58.513 50.000 0.00 0.00 0.00 3.85
2546 2618 2.109425 AGGTCCACCGAATGTAAAGC 57.891 50.000 0.00 0.00 42.08 3.51
2547 2619 1.349688 AGGTCCACCGAATGTAAAGCA 59.650 47.619 0.00 0.00 42.08 3.91
2548 2620 2.156098 GGTCCACCGAATGTAAAGCAA 58.844 47.619 0.00 0.00 0.00 3.91
2549 2621 2.554893 GGTCCACCGAATGTAAAGCAAA 59.445 45.455 0.00 0.00 0.00 3.68
2550 2622 3.192633 GGTCCACCGAATGTAAAGCAAAT 59.807 43.478 0.00 0.00 0.00 2.32
2551 2623 4.165779 GTCCACCGAATGTAAAGCAAATG 58.834 43.478 0.00 0.00 0.00 2.32
2552 2624 4.075682 TCCACCGAATGTAAAGCAAATGA 58.924 39.130 0.00 0.00 0.00 2.57
2553 2625 4.704540 TCCACCGAATGTAAAGCAAATGAT 59.295 37.500 0.00 0.00 0.00 2.45
2554 2626 5.883115 TCCACCGAATGTAAAGCAAATGATA 59.117 36.000 0.00 0.00 0.00 2.15
2555 2627 6.545666 TCCACCGAATGTAAAGCAAATGATAT 59.454 34.615 0.00 0.00 0.00 1.63
2556 2628 7.068103 TCCACCGAATGTAAAGCAAATGATATT 59.932 33.333 0.00 0.00 0.00 1.28
2557 2629 8.349245 CCACCGAATGTAAAGCAAATGATATTA 58.651 33.333 0.00 0.00 0.00 0.98
2558 2630 9.897744 CACCGAATGTAAAGCAAATGATATTAT 57.102 29.630 0.00 0.00 0.00 1.28
2585 2657 2.956333 GGGGTCGAAATGGAAATAAGGG 59.044 50.000 0.00 0.00 0.00 3.95
2637 2709 7.437793 AAAAATCAAGGGTGCAAAACATATG 57.562 32.000 0.00 0.00 0.00 1.78
2638 2710 4.741321 ATCAAGGGTGCAAAACATATGG 57.259 40.909 7.80 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.115266 CCTTCCCCTTTGCCACGT 59.885 61.111 0.00 0.00 0.00 4.49
1 2 1.971695 GACCTTCCCCTTTGCCACG 60.972 63.158 0.00 0.00 0.00 4.94
2 3 1.606601 GGACCTTCCCCTTTGCCAC 60.607 63.158 0.00 0.00 0.00 5.01
3 4 0.476808 TAGGACCTTCCCCTTTGCCA 60.477 55.000 0.00 0.00 37.19 4.92
4 5 0.702316 TTAGGACCTTCCCCTTTGCC 59.298 55.000 0.00 0.00 37.19 4.52
5 6 1.354705 ACTTAGGACCTTCCCCTTTGC 59.645 52.381 0.00 0.00 37.19 3.68
6 7 3.808834 AACTTAGGACCTTCCCCTTTG 57.191 47.619 0.00 0.00 37.19 2.77
7 8 4.480115 CAAAACTTAGGACCTTCCCCTTT 58.520 43.478 0.00 0.00 37.19 3.11
8 9 3.754172 GCAAAACTTAGGACCTTCCCCTT 60.754 47.826 0.00 0.00 37.19 3.95
9 10 2.225041 GCAAAACTTAGGACCTTCCCCT 60.225 50.000 0.00 0.00 37.19 4.79
10 11 2.168496 GCAAAACTTAGGACCTTCCCC 58.832 52.381 0.00 0.00 37.19 4.81
11 12 3.156288 AGCAAAACTTAGGACCTTCCC 57.844 47.619 0.00 0.00 37.19 3.97
12 13 4.399219 AGAAGCAAAACTTAGGACCTTCC 58.601 43.478 0.00 0.00 39.29 3.46
13 14 5.763088 CAAGAAGCAAAACTTAGGACCTTC 58.237 41.667 0.00 0.00 39.29 3.46
14 15 4.038042 GCAAGAAGCAAAACTTAGGACCTT 59.962 41.667 0.00 0.00 44.79 3.50
15 16 3.570125 GCAAGAAGCAAAACTTAGGACCT 59.430 43.478 0.00 0.00 44.79 3.85
16 17 3.902150 GCAAGAAGCAAAACTTAGGACC 58.098 45.455 0.00 0.00 44.79 4.46
22 23 5.077134 AAGTTGAGCAAGAAGCAAAACTT 57.923 34.783 11.75 11.75 46.96 2.66
23 24 4.082026 ACAAGTTGAGCAAGAAGCAAAACT 60.082 37.500 10.54 0.00 46.63 2.66
29 30 6.697019 TGATTTAAACAAGTTGAGCAAGAAGC 59.303 34.615 10.54 0.59 46.19 3.86
30 31 8.807667 ATGATTTAAACAAGTTGAGCAAGAAG 57.192 30.769 10.54 0.00 0.00 2.85
31 32 9.248291 GAATGATTTAAACAAGTTGAGCAAGAA 57.752 29.630 10.54 0.00 0.00 2.52
32 33 8.412456 TGAATGATTTAAACAAGTTGAGCAAGA 58.588 29.630 10.54 0.00 0.00 3.02
33 34 8.578308 TGAATGATTTAAACAAGTTGAGCAAG 57.422 30.769 10.54 0.00 0.00 4.01
34 35 9.545105 AATGAATGATTTAAACAAGTTGAGCAA 57.455 25.926 10.54 0.00 0.00 3.91
35 36 9.195411 GAATGAATGATTTAAACAAGTTGAGCA 57.805 29.630 10.54 0.00 0.00 4.26
36 37 9.415544 AGAATGAATGATTTAAACAAGTTGAGC 57.584 29.630 10.54 0.00 0.00 4.26
51 52 9.636879 CGAACTACATATGAGAGAATGAATGAT 57.363 33.333 10.38 0.00 0.00 2.45
52 53 7.596621 GCGAACTACATATGAGAGAATGAATGA 59.403 37.037 10.38 0.00 0.00 2.57
53 54 7.383300 TGCGAACTACATATGAGAGAATGAATG 59.617 37.037 10.38 0.00 0.00 2.67
54 55 7.383572 GTGCGAACTACATATGAGAGAATGAAT 59.616 37.037 10.38 0.00 0.00 2.57
55 56 6.697455 GTGCGAACTACATATGAGAGAATGAA 59.303 38.462 10.38 0.00 0.00 2.57
56 57 6.209361 GTGCGAACTACATATGAGAGAATGA 58.791 40.000 10.38 0.00 0.00 2.57
57 58 5.116225 CGTGCGAACTACATATGAGAGAATG 59.884 44.000 10.38 3.27 0.00 2.67
58 59 5.008712 TCGTGCGAACTACATATGAGAGAAT 59.991 40.000 10.38 1.68 0.00 2.40
59 60 4.334481 TCGTGCGAACTACATATGAGAGAA 59.666 41.667 10.38 0.00 0.00 2.87
60 61 3.875134 TCGTGCGAACTACATATGAGAGA 59.125 43.478 10.38 0.00 0.00 3.10
61 62 4.210832 TCGTGCGAACTACATATGAGAG 57.789 45.455 10.38 8.65 0.00 3.20
62 63 3.626217 ACTCGTGCGAACTACATATGAGA 59.374 43.478 10.38 0.00 0.00 3.27
63 64 3.953766 ACTCGTGCGAACTACATATGAG 58.046 45.455 10.38 5.24 0.00 2.90
64 65 4.102649 CAACTCGTGCGAACTACATATGA 58.897 43.478 10.38 0.00 0.00 2.15
65 66 3.301835 GCAACTCGTGCGAACTACATATG 60.302 47.826 0.00 0.00 45.10 1.78
66 67 2.858344 GCAACTCGTGCGAACTACATAT 59.142 45.455 0.00 0.00 45.10 1.78
67 68 2.256174 GCAACTCGTGCGAACTACATA 58.744 47.619 0.00 0.00 45.10 2.29
68 69 1.068474 GCAACTCGTGCGAACTACAT 58.932 50.000 0.00 0.00 45.10 2.29
69 70 2.513159 GCAACTCGTGCGAACTACA 58.487 52.632 0.00 0.00 45.10 2.74
78 79 2.237416 TGCATCACAGCAACTCGTG 58.763 52.632 0.00 0.00 42.46 4.35
79 80 4.777384 TGCATCACAGCAACTCGT 57.223 50.000 0.00 0.00 42.46 4.18
86 87 1.300971 ATCGTGTGGTGCATCACAGC 61.301 55.000 32.52 23.67 46.72 4.40
87 88 1.929169 CTATCGTGTGGTGCATCACAG 59.071 52.381 32.52 24.06 46.72 3.66
88 89 1.548269 TCTATCGTGTGGTGCATCACA 59.452 47.619 28.65 28.65 44.36 3.58
89 90 2.196749 CTCTATCGTGTGGTGCATCAC 58.803 52.381 23.49 23.49 38.09 3.06
90 91 1.136891 CCTCTATCGTGTGGTGCATCA 59.863 52.381 0.00 0.00 0.00 3.07
91 92 1.539065 CCCTCTATCGTGTGGTGCATC 60.539 57.143 0.00 0.00 0.00 3.91
92 93 0.465705 CCCTCTATCGTGTGGTGCAT 59.534 55.000 0.00 0.00 0.00 3.96
93 94 0.613572 TCCCTCTATCGTGTGGTGCA 60.614 55.000 0.00 0.00 0.00 4.57
94 95 0.179108 GTCCCTCTATCGTGTGGTGC 60.179 60.000 0.00 0.00 0.00 5.01
95 96 0.100682 CGTCCCTCTATCGTGTGGTG 59.899 60.000 0.00 0.00 0.00 4.17
96 97 1.035932 CCGTCCCTCTATCGTGTGGT 61.036 60.000 0.00 0.00 0.00 4.16
97 98 1.734137 CCGTCCCTCTATCGTGTGG 59.266 63.158 0.00 0.00 0.00 4.17
98 99 1.065928 GCCGTCCCTCTATCGTGTG 59.934 63.158 0.00 0.00 0.00 3.82
99 100 2.125961 GGCCGTCCCTCTATCGTGT 61.126 63.158 0.00 0.00 0.00 4.49
100 101 1.464376 ATGGCCGTCCCTCTATCGTG 61.464 60.000 0.00 0.00 0.00 4.35
101 102 0.759436 AATGGCCGTCCCTCTATCGT 60.759 55.000 0.00 0.00 0.00 3.73
102 103 0.393077 AAATGGCCGTCCCTCTATCG 59.607 55.000 0.00 0.00 0.00 2.92
103 104 2.609737 CGTAAATGGCCGTCCCTCTATC 60.610 54.545 0.00 0.00 0.00 2.08
104 105 1.343465 CGTAAATGGCCGTCCCTCTAT 59.657 52.381 0.00 0.00 0.00 1.98
105 106 0.748450 CGTAAATGGCCGTCCCTCTA 59.252 55.000 0.00 0.00 0.00 2.43
106 107 1.262640 ACGTAAATGGCCGTCCCTCT 61.263 55.000 0.00 0.00 30.05 3.69
107 108 0.461135 TACGTAAATGGCCGTCCCTC 59.539 55.000 0.00 0.00 38.43 4.30
108 109 0.176449 GTACGTAAATGGCCGTCCCT 59.824 55.000 0.00 0.00 38.43 4.20
109 110 1.147557 CGTACGTAAATGGCCGTCCC 61.148 60.000 7.22 0.00 38.43 4.46
110 111 1.755405 GCGTACGTAAATGGCCGTCC 61.755 60.000 17.90 0.00 38.43 4.79
111 112 1.077645 TGCGTACGTAAATGGCCGTC 61.078 55.000 17.90 0.00 38.43 4.79
112 113 1.079956 TGCGTACGTAAATGGCCGT 60.080 52.632 17.90 0.00 40.87 5.68
113 114 1.345856 GTGCGTACGTAAATGGCCG 59.654 57.895 17.90 0.00 0.00 6.13
114 115 0.095762 GTGTGCGTACGTAAATGGCC 59.904 55.000 17.90 0.00 0.00 5.36
115 116 1.073177 AGTGTGCGTACGTAAATGGC 58.927 50.000 17.90 0.27 0.00 4.40
116 117 2.063266 ACAGTGTGCGTACGTAAATGG 58.937 47.619 17.90 6.50 0.00 3.16
117 118 3.465907 CAACAGTGTGCGTACGTAAATG 58.534 45.455 17.90 13.82 0.00 2.32
118 119 2.477375 CCAACAGTGTGCGTACGTAAAT 59.523 45.455 17.90 0.00 0.00 1.40
119 120 1.859703 CCAACAGTGTGCGTACGTAAA 59.140 47.619 17.90 4.23 0.00 2.01
120 121 1.066757 TCCAACAGTGTGCGTACGTAA 59.933 47.619 17.90 2.64 0.00 3.18
121 122 0.667453 TCCAACAGTGTGCGTACGTA 59.333 50.000 17.90 10.06 0.00 3.57
122 123 0.032952 ATCCAACAGTGTGCGTACGT 59.967 50.000 17.90 0.00 0.00 3.57
123 124 0.438445 CATCCAACAGTGTGCGTACG 59.562 55.000 11.84 11.84 0.00 3.67
124 125 1.790755 TCATCCAACAGTGTGCGTAC 58.209 50.000 0.00 0.00 0.00 3.67
125 126 2.535012 TTCATCCAACAGTGTGCGTA 57.465 45.000 0.00 0.00 0.00 4.42
126 127 1.333619 GTTTCATCCAACAGTGTGCGT 59.666 47.619 0.00 0.00 0.00 5.24
127 128 1.334960 GGTTTCATCCAACAGTGTGCG 60.335 52.381 0.00 0.00 0.00 5.34
128 129 1.680735 TGGTTTCATCCAACAGTGTGC 59.319 47.619 0.00 0.00 34.24 4.57
129 130 4.362279 CTTTGGTTTCATCCAACAGTGTG 58.638 43.478 0.00 0.00 45.60 3.82
130 131 3.384467 CCTTTGGTTTCATCCAACAGTGT 59.616 43.478 0.00 0.00 45.60 3.55
131 132 3.243839 CCCTTTGGTTTCATCCAACAGTG 60.244 47.826 0.00 0.00 45.60 3.66
132 133 2.965147 CCCTTTGGTTTCATCCAACAGT 59.035 45.455 0.00 0.00 45.60 3.55
133 134 2.299867 CCCCTTTGGTTTCATCCAACAG 59.700 50.000 0.00 0.76 45.60 3.16
134 135 2.324541 CCCCTTTGGTTTCATCCAACA 58.675 47.619 0.00 0.00 45.60 3.33
135 136 1.001974 GCCCCTTTGGTTTCATCCAAC 59.998 52.381 0.00 0.00 45.60 3.77
136 137 1.347062 GCCCCTTTGGTTTCATCCAA 58.653 50.000 0.00 0.00 44.48 3.53
137 138 0.189574 TGCCCCTTTGGTTTCATCCA 59.810 50.000 0.00 0.00 36.04 3.41
138 139 0.897621 CTGCCCCTTTGGTTTCATCC 59.102 55.000 0.00 0.00 36.04 3.51
139 140 1.632589 ACTGCCCCTTTGGTTTCATC 58.367 50.000 0.00 0.00 36.04 2.92
140 141 2.990740 TACTGCCCCTTTGGTTTCAT 57.009 45.000 0.00 0.00 36.04 2.57
141 142 2.158385 ACATACTGCCCCTTTGGTTTCA 60.158 45.455 0.00 0.00 36.04 2.69
142 143 2.231235 CACATACTGCCCCTTTGGTTTC 59.769 50.000 0.00 0.00 36.04 2.78
143 144 2.247358 CACATACTGCCCCTTTGGTTT 58.753 47.619 0.00 0.00 36.04 3.27
144 145 1.146982 ACACATACTGCCCCTTTGGTT 59.853 47.619 0.00 0.00 36.04 3.67
145 146 0.777446 ACACATACTGCCCCTTTGGT 59.223 50.000 0.00 0.00 36.04 3.67
146 147 2.643551 CTACACATACTGCCCCTTTGG 58.356 52.381 0.00 0.00 37.09 3.28
147 148 2.238646 TCCTACACATACTGCCCCTTTG 59.761 50.000 0.00 0.00 0.00 2.77
148 149 2.238898 GTCCTACACATACTGCCCCTTT 59.761 50.000 0.00 0.00 0.00 3.11
149 150 1.838077 GTCCTACACATACTGCCCCTT 59.162 52.381 0.00 0.00 0.00 3.95
150 151 1.497161 GTCCTACACATACTGCCCCT 58.503 55.000 0.00 0.00 0.00 4.79
151 152 0.104304 CGTCCTACACATACTGCCCC 59.896 60.000 0.00 0.00 0.00 5.80
152 153 1.108776 TCGTCCTACACATACTGCCC 58.891 55.000 0.00 0.00 0.00 5.36
153 154 1.475280 TGTCGTCCTACACATACTGCC 59.525 52.381 0.00 0.00 0.00 4.85
154 155 2.933495 TGTCGTCCTACACATACTGC 57.067 50.000 0.00 0.00 0.00 4.40
155 156 4.632538 TCATGTCGTCCTACACATACTG 57.367 45.455 0.00 0.00 31.78 2.74
156 157 4.278669 GGATCATGTCGTCCTACACATACT 59.721 45.833 0.00 0.00 31.78 2.12
157 158 4.547532 GGATCATGTCGTCCTACACATAC 58.452 47.826 0.00 0.00 31.78 2.39
158 159 3.252458 CGGATCATGTCGTCCTACACATA 59.748 47.826 11.03 0.00 31.78 2.29
159 160 2.034685 CGGATCATGTCGTCCTACACAT 59.965 50.000 11.03 0.00 33.29 3.21
160 161 1.404035 CGGATCATGTCGTCCTACACA 59.596 52.381 11.03 0.00 32.19 3.72
161 162 1.404391 ACGGATCATGTCGTCCTACAC 59.596 52.381 11.03 0.00 34.20 2.90
162 163 1.758936 ACGGATCATGTCGTCCTACA 58.241 50.000 11.03 0.00 34.20 2.74
163 164 2.098607 TCAACGGATCATGTCGTCCTAC 59.901 50.000 10.64 0.00 38.78 3.18
164 165 2.371306 TCAACGGATCATGTCGTCCTA 58.629 47.619 10.64 0.46 38.78 2.94
165 166 1.182667 TCAACGGATCATGTCGTCCT 58.817 50.000 10.64 0.00 38.78 3.85
166 167 1.860950 CATCAACGGATCATGTCGTCC 59.139 52.381 10.64 7.83 38.78 4.79
167 168 2.809446 TCATCAACGGATCATGTCGTC 58.191 47.619 10.64 0.81 38.78 4.20
168 169 2.959507 TCATCAACGGATCATGTCGT 57.040 45.000 0.00 0.00 41.71 4.34
169 170 4.801147 ATTTCATCAACGGATCATGTCG 57.199 40.909 0.00 0.00 0.00 4.35
170 171 6.851222 AGTATTTCATCAACGGATCATGTC 57.149 37.500 0.00 0.00 0.00 3.06
171 172 6.599244 ACAAGTATTTCATCAACGGATCATGT 59.401 34.615 0.00 0.00 0.00 3.21
172 173 7.019774 ACAAGTATTTCATCAACGGATCATG 57.980 36.000 0.00 0.00 0.00 3.07
173 174 7.415541 CCAACAAGTATTTCATCAACGGATCAT 60.416 37.037 0.00 0.00 0.00 2.45
174 175 6.128035 CCAACAAGTATTTCATCAACGGATCA 60.128 38.462 0.00 0.00 0.00 2.92
175 176 6.093495 TCCAACAAGTATTTCATCAACGGATC 59.907 38.462 0.00 0.00 0.00 3.36
176 177 5.943416 TCCAACAAGTATTTCATCAACGGAT 59.057 36.000 0.00 0.00 0.00 4.18
177 178 5.180492 GTCCAACAAGTATTTCATCAACGGA 59.820 40.000 0.00 0.00 0.00 4.69
178 179 5.049060 TGTCCAACAAGTATTTCATCAACGG 60.049 40.000 0.00 0.00 0.00 4.44
179 180 5.996219 TGTCCAACAAGTATTTCATCAACG 58.004 37.500 0.00 0.00 0.00 4.10
180 181 7.752239 CAGATGTCCAACAAGTATTTCATCAAC 59.248 37.037 0.00 0.00 34.71 3.18
181 182 7.094248 CCAGATGTCCAACAAGTATTTCATCAA 60.094 37.037 0.00 0.00 34.71 2.57
182 183 6.375174 CCAGATGTCCAACAAGTATTTCATCA 59.625 38.462 0.00 0.00 34.71 3.07
183 184 6.375455 ACCAGATGTCCAACAAGTATTTCATC 59.625 38.462 0.00 0.00 0.00 2.92
184 185 6.248433 ACCAGATGTCCAACAAGTATTTCAT 58.752 36.000 0.00 0.00 0.00 2.57
185 186 5.630121 ACCAGATGTCCAACAAGTATTTCA 58.370 37.500 0.00 0.00 0.00 2.69
186 187 6.575162 AACCAGATGTCCAACAAGTATTTC 57.425 37.500 0.00 0.00 0.00 2.17
187 188 8.650143 ATTAACCAGATGTCCAACAAGTATTT 57.350 30.769 0.00 0.00 0.00 1.40
188 189 8.109634 AGATTAACCAGATGTCCAACAAGTATT 58.890 33.333 0.00 0.00 0.00 1.89
189 190 7.633789 AGATTAACCAGATGTCCAACAAGTAT 58.366 34.615 0.00 0.00 0.00 2.12
190 191 7.016153 AGATTAACCAGATGTCCAACAAGTA 57.984 36.000 0.00 0.00 0.00 2.24
191 192 5.880901 AGATTAACCAGATGTCCAACAAGT 58.119 37.500 0.00 0.00 0.00 3.16
192 193 5.939883 TGAGATTAACCAGATGTCCAACAAG 59.060 40.000 0.00 0.00 0.00 3.16
193 194 5.875224 TGAGATTAACCAGATGTCCAACAA 58.125 37.500 0.00 0.00 0.00 2.83
194 195 5.497464 TGAGATTAACCAGATGTCCAACA 57.503 39.130 0.00 0.00 0.00 3.33
195 196 6.115446 TGATGAGATTAACCAGATGTCCAAC 58.885 40.000 0.00 0.00 0.00 3.77
196 197 6.312141 TGATGAGATTAACCAGATGTCCAA 57.688 37.500 0.00 0.00 0.00 3.53
197 198 5.955961 TGATGAGATTAACCAGATGTCCA 57.044 39.130 0.00 0.00 0.00 4.02
198 199 7.814264 ATTTGATGAGATTAACCAGATGTCC 57.186 36.000 0.00 0.00 0.00 4.02
199 200 9.512435 CAAATTTGATGAGATTAACCAGATGTC 57.488 33.333 13.08 0.00 0.00 3.06
200 201 9.246670 TCAAATTTGATGAGATTAACCAGATGT 57.753 29.630 16.91 0.00 31.01 3.06
201 202 9.731819 CTCAAATTTGATGAGATTAACCAGATG 57.268 33.333 20.76 0.08 45.74 2.90
202 203 9.690913 TCTCAAATTTGATGAGATTAACCAGAT 57.309 29.630 20.76 0.00 46.23 2.90
213 214 9.121517 GTACAACAATGTCTCAAATTTGATGAG 57.878 33.333 20.76 10.07 44.53 2.90
214 215 8.849168 AGTACAACAATGTCTCAAATTTGATGA 58.151 29.630 20.76 16.30 41.05 2.92
217 218 9.554395 TCTAGTACAACAATGTCTCAAATTTGA 57.446 29.630 19.45 19.45 41.05 2.69
218 219 9.599322 GTCTAGTACAACAATGTCTCAAATTTG 57.401 33.333 12.15 12.15 41.05 2.32
219 220 9.561069 AGTCTAGTACAACAATGTCTCAAATTT 57.439 29.630 0.00 0.00 41.05 1.82
220 221 9.561069 AAGTCTAGTACAACAATGTCTCAAATT 57.439 29.630 0.00 0.00 41.05 1.82
226 227 9.998106 ACAAATAAGTCTAGTACAACAATGTCT 57.002 29.630 0.00 0.00 41.05 3.41
228 229 9.555727 ACACAAATAAGTCTAGTACAACAATGT 57.444 29.630 0.00 0.00 43.74 2.71
229 230 9.811655 CACACAAATAAGTCTAGTACAACAATG 57.188 33.333 0.00 0.00 0.00 2.82
230 231 8.504005 GCACACAAATAAGTCTAGTACAACAAT 58.496 33.333 0.00 0.00 0.00 2.71
231 232 7.713507 AGCACACAAATAAGTCTAGTACAACAA 59.286 33.333 0.00 0.00 0.00 2.83
232 233 7.214381 AGCACACAAATAAGTCTAGTACAACA 58.786 34.615 0.00 0.00 0.00 3.33
233 234 7.653767 AGCACACAAATAAGTCTAGTACAAC 57.346 36.000 0.00 0.00 0.00 3.32
234 235 9.366216 CATAGCACACAAATAAGTCTAGTACAA 57.634 33.333 0.00 0.00 0.00 2.41
235 236 8.528643 ACATAGCACACAAATAAGTCTAGTACA 58.471 33.333 0.00 0.00 0.00 2.90
236 237 8.928270 ACATAGCACACAAATAAGTCTAGTAC 57.072 34.615 0.00 0.00 0.00 2.73
238 239 9.534565 CATACATAGCACACAAATAAGTCTAGT 57.465 33.333 0.00 0.00 0.00 2.57
239 240 8.982685 CCATACATAGCACACAAATAAGTCTAG 58.017 37.037 0.00 0.00 0.00 2.43
240 241 8.700973 TCCATACATAGCACACAAATAAGTCTA 58.299 33.333 0.00 0.00 0.00 2.59
241 242 7.564793 TCCATACATAGCACACAAATAAGTCT 58.435 34.615 0.00 0.00 0.00 3.24
242 243 7.786178 TCCATACATAGCACACAAATAAGTC 57.214 36.000 0.00 0.00 0.00 3.01
243 244 7.775093 ACATCCATACATAGCACACAAATAAGT 59.225 33.333 0.00 0.00 0.00 2.24
244 245 8.158169 ACATCCATACATAGCACACAAATAAG 57.842 34.615 0.00 0.00 0.00 1.73
245 246 8.518430 AACATCCATACATAGCACACAAATAA 57.482 30.769 0.00 0.00 0.00 1.40
246 247 8.518430 AAACATCCATACATAGCACACAAATA 57.482 30.769 0.00 0.00 0.00 1.40
247 248 7.408756 AAACATCCATACATAGCACACAAAT 57.591 32.000 0.00 0.00 0.00 2.32
248 249 6.832520 AAACATCCATACATAGCACACAAA 57.167 33.333 0.00 0.00 0.00 2.83
249 250 6.832520 AAAACATCCATACATAGCACACAA 57.167 33.333 0.00 0.00 0.00 3.33
250 251 6.619744 CAAAAACATCCATACATAGCACACA 58.380 36.000 0.00 0.00 0.00 3.72
251 252 5.516339 GCAAAAACATCCATACATAGCACAC 59.484 40.000 0.00 0.00 0.00 3.82
252 253 5.418524 AGCAAAAACATCCATACATAGCACA 59.581 36.000 0.00 0.00 0.00 4.57
253 254 5.894807 AGCAAAAACATCCATACATAGCAC 58.105 37.500 0.00 0.00 0.00 4.40
254 255 7.822161 ATAGCAAAAACATCCATACATAGCA 57.178 32.000 0.00 0.00 0.00 3.49
255 256 9.533253 AAAATAGCAAAAACATCCATACATAGC 57.467 29.630 0.00 0.00 0.00 2.97
282 283 9.674824 GGCTGATATTCATGAAAGTTTCAATAG 57.325 33.333 21.57 14.28 43.95 1.73
283 284 8.344831 CGGCTGATATTCATGAAAGTTTCAATA 58.655 33.333 21.57 14.86 43.95 1.90
284 285 7.198390 CGGCTGATATTCATGAAAGTTTCAAT 58.802 34.615 21.57 13.26 43.95 2.57
285 286 6.404623 CCGGCTGATATTCATGAAAGTTTCAA 60.405 38.462 21.57 6.66 43.95 2.69
286 287 5.066375 CCGGCTGATATTCATGAAAGTTTCA 59.934 40.000 20.14 20.14 45.01 2.69
287 288 5.506317 CCCGGCTGATATTCATGAAAGTTTC 60.506 44.000 13.09 8.75 0.00 2.78
288 289 4.339247 CCCGGCTGATATTCATGAAAGTTT 59.661 41.667 13.09 0.00 0.00 2.66
289 290 3.885297 CCCGGCTGATATTCATGAAAGTT 59.115 43.478 13.09 0.00 0.00 2.66
290 291 3.117888 ACCCGGCTGATATTCATGAAAGT 60.118 43.478 13.09 3.84 0.00 2.66
291 292 3.480470 ACCCGGCTGATATTCATGAAAG 58.520 45.455 13.09 6.37 0.00 2.62
292 293 3.576078 ACCCGGCTGATATTCATGAAA 57.424 42.857 13.09 2.57 0.00 2.69
293 294 3.213506 CAACCCGGCTGATATTCATGAA 58.786 45.455 11.26 11.26 0.00 2.57
294 295 2.849942 CAACCCGGCTGATATTCATGA 58.150 47.619 0.00 0.00 0.00 3.07
295 296 1.267806 GCAACCCGGCTGATATTCATG 59.732 52.381 0.00 0.00 0.00 3.07
296 297 1.133823 TGCAACCCGGCTGATATTCAT 60.134 47.619 0.00 0.00 34.04 2.57
297 298 0.254462 TGCAACCCGGCTGATATTCA 59.746 50.000 0.00 0.00 34.04 2.57
298 299 1.267806 CATGCAACCCGGCTGATATTC 59.732 52.381 0.00 0.00 34.04 1.75
299 300 1.133823 TCATGCAACCCGGCTGATATT 60.134 47.619 0.00 0.00 34.04 1.28
300 301 0.473755 TCATGCAACCCGGCTGATAT 59.526 50.000 0.00 0.00 34.04 1.63
301 302 0.254462 TTCATGCAACCCGGCTGATA 59.746 50.000 0.00 0.00 34.04 2.15
302 303 0.396139 ATTCATGCAACCCGGCTGAT 60.396 50.000 0.00 0.00 34.04 2.90
303 304 0.611618 AATTCATGCAACCCGGCTGA 60.612 50.000 0.00 0.00 34.04 4.26
304 305 0.247185 AAATTCATGCAACCCGGCTG 59.753 50.000 0.00 0.00 34.04 4.85
305 306 0.247185 CAAATTCATGCAACCCGGCT 59.753 50.000 0.00 0.00 34.04 5.52
306 307 0.740516 CCAAATTCATGCAACCCGGC 60.741 55.000 0.00 0.00 0.00 6.13
307 308 0.607620 ACCAAATTCATGCAACCCGG 59.392 50.000 0.00 0.00 0.00 5.73
308 309 1.404047 GGACCAAATTCATGCAACCCG 60.404 52.381 0.00 0.00 0.00 5.28
309 310 1.404047 CGGACCAAATTCATGCAACCC 60.404 52.381 0.00 0.00 0.00 4.11
310 311 1.994916 CGGACCAAATTCATGCAACC 58.005 50.000 0.00 0.00 0.00 3.77
311 312 1.067635 AGCGGACCAAATTCATGCAAC 60.068 47.619 0.00 0.00 0.00 4.17
312 313 1.255882 AGCGGACCAAATTCATGCAA 58.744 45.000 0.00 0.00 0.00 4.08
313 314 1.255882 AAGCGGACCAAATTCATGCA 58.744 45.000 0.00 0.00 0.00 3.96
314 315 2.423538 ACTAAGCGGACCAAATTCATGC 59.576 45.455 0.00 0.00 0.00 4.06
315 316 4.701956 AACTAAGCGGACCAAATTCATG 57.298 40.909 0.00 0.00 0.00 3.07
316 317 4.764823 TCAAACTAAGCGGACCAAATTCAT 59.235 37.500 0.00 0.00 0.00 2.57
317 318 4.138290 TCAAACTAAGCGGACCAAATTCA 58.862 39.130 0.00 0.00 0.00 2.57
318 319 4.759516 TCAAACTAAGCGGACCAAATTC 57.240 40.909 0.00 0.00 0.00 2.17
319 320 5.242838 TGATTCAAACTAAGCGGACCAAATT 59.757 36.000 0.00 0.00 0.00 1.82
320 321 4.764823 TGATTCAAACTAAGCGGACCAAAT 59.235 37.500 0.00 0.00 0.00 2.32
321 322 4.138290 TGATTCAAACTAAGCGGACCAAA 58.862 39.130 0.00 0.00 0.00 3.28
322 323 3.745799 TGATTCAAACTAAGCGGACCAA 58.254 40.909 0.00 0.00 0.00 3.67
323 324 3.410631 TGATTCAAACTAAGCGGACCA 57.589 42.857 0.00 0.00 0.00 4.02
324 325 3.065371 CCATGATTCAAACTAAGCGGACC 59.935 47.826 0.00 0.00 0.00 4.46
325 326 3.689649 ACCATGATTCAAACTAAGCGGAC 59.310 43.478 0.00 0.00 0.00 4.79
326 327 3.950397 ACCATGATTCAAACTAAGCGGA 58.050 40.909 0.00 0.00 0.00 5.54
327 328 4.155826 TGAACCATGATTCAAACTAAGCGG 59.844 41.667 0.00 0.00 35.65 5.52
328 329 5.295431 TGAACCATGATTCAAACTAAGCG 57.705 39.130 0.00 0.00 35.65 4.68
336 337 5.398169 GCATACGTTTGAACCATGATTCAA 58.602 37.500 11.39 11.39 44.80 2.69
337 338 4.436718 CGCATACGTTTGAACCATGATTCA 60.437 41.667 10.37 0.00 33.92 2.57
338 339 4.028383 CGCATACGTTTGAACCATGATTC 58.972 43.478 10.37 0.00 33.53 2.52
339 340 3.181501 CCGCATACGTTTGAACCATGATT 60.182 43.478 10.37 0.00 37.70 2.57
340 341 2.354510 CCGCATACGTTTGAACCATGAT 59.645 45.455 10.37 0.00 37.70 2.45
341 342 1.735018 CCGCATACGTTTGAACCATGA 59.265 47.619 10.37 0.00 37.70 3.07
342 343 1.735018 TCCGCATACGTTTGAACCATG 59.265 47.619 10.37 0.00 37.70 3.66
343 344 1.735571 GTCCGCATACGTTTGAACCAT 59.264 47.619 10.37 0.00 37.70 3.55
344 345 1.149987 GTCCGCATACGTTTGAACCA 58.850 50.000 10.37 0.00 37.70 3.67
345 346 1.127951 CTGTCCGCATACGTTTGAACC 59.872 52.381 10.37 0.00 37.70 3.62
346 347 1.463528 GCTGTCCGCATACGTTTGAAC 60.464 52.381 10.37 5.16 38.92 3.18
347 348 0.793861 GCTGTCCGCATACGTTTGAA 59.206 50.000 10.37 0.00 38.92 2.69
348 349 1.348538 CGCTGTCCGCATACGTTTGA 61.349 55.000 10.37 0.00 39.08 2.69
349 350 1.058748 CGCTGTCCGCATACGTTTG 59.941 57.895 0.00 0.00 39.08 2.93
350 351 0.947180 AACGCTGTCCGCATACGTTT 60.947 50.000 0.00 0.00 41.36 3.60
351 352 1.373748 AACGCTGTCCGCATACGTT 60.374 52.632 0.00 0.00 40.23 3.99
352 353 2.092291 CAACGCTGTCCGCATACGT 61.092 57.895 0.00 0.00 41.76 3.57
353 354 2.695055 CAACGCTGTCCGCATACG 59.305 61.111 0.00 0.00 41.76 3.06
354 355 0.810031 ATCCAACGCTGTCCGCATAC 60.810 55.000 0.00 0.00 41.76 2.39
355 356 0.809636 CATCCAACGCTGTCCGCATA 60.810 55.000 0.00 0.00 41.76 3.14
356 357 2.108514 CATCCAACGCTGTCCGCAT 61.109 57.895 0.00 0.00 41.76 4.73
357 358 2.741985 CATCCAACGCTGTCCGCA 60.742 61.111 0.00 0.00 41.76 5.69
358 359 2.434185 TCATCCAACGCTGTCCGC 60.434 61.111 0.00 0.00 41.76 5.54
359 360 2.444624 CGTCATCCAACGCTGTCCG 61.445 63.158 0.00 0.00 44.21 4.79
360 361 1.080093 TCGTCATCCAACGCTGTCC 60.080 57.895 0.00 0.00 42.31 4.02
361 362 1.352156 GGTCGTCATCCAACGCTGTC 61.352 60.000 0.00 0.00 42.31 3.51
362 363 1.374252 GGTCGTCATCCAACGCTGT 60.374 57.895 0.00 0.00 42.31 4.40
363 364 0.670546 AAGGTCGTCATCCAACGCTG 60.671 55.000 0.00 0.00 42.31 5.18
364 365 0.389948 GAAGGTCGTCATCCAACGCT 60.390 55.000 0.00 0.00 42.31 5.07
365 366 0.669318 TGAAGGTCGTCATCCAACGC 60.669 55.000 0.00 0.00 42.31 4.84
366 367 1.350193 CTGAAGGTCGTCATCCAACG 58.650 55.000 0.00 0.00 43.92 4.10
367 368 1.079503 GCTGAAGGTCGTCATCCAAC 58.920 55.000 0.00 0.00 0.00 3.77
368 369 0.684535 TGCTGAAGGTCGTCATCCAA 59.315 50.000 0.00 0.00 0.00 3.53
369 370 0.904649 ATGCTGAAGGTCGTCATCCA 59.095 50.000 0.00 0.00 0.00 3.41
370 371 1.134699 TGATGCTGAAGGTCGTCATCC 60.135 52.381 0.00 0.00 34.29 3.51
371 372 2.200067 CTGATGCTGAAGGTCGTCATC 58.800 52.381 0.00 0.00 35.40 2.92
372 373 1.552337 ACTGATGCTGAAGGTCGTCAT 59.448 47.619 0.00 0.00 0.00 3.06
373 374 0.969149 ACTGATGCTGAAGGTCGTCA 59.031 50.000 0.00 0.00 0.00 4.35
374 375 1.337260 ACACTGATGCTGAAGGTCGTC 60.337 52.381 0.00 0.00 0.00 4.20
375 376 0.681733 ACACTGATGCTGAAGGTCGT 59.318 50.000 0.00 0.00 0.00 4.34
376 377 1.067283 AGACACTGATGCTGAAGGTCG 60.067 52.381 0.00 0.00 0.00 4.79
377 378 2.758736 AGACACTGATGCTGAAGGTC 57.241 50.000 0.00 0.00 0.00 3.85
378 379 3.118482 CCATAGACACTGATGCTGAAGGT 60.118 47.826 0.00 0.00 0.00 3.50
379 380 3.133542 TCCATAGACACTGATGCTGAAGG 59.866 47.826 0.00 0.00 0.00 3.46
380 381 4.118410 GTCCATAGACACTGATGCTGAAG 58.882 47.826 0.00 0.00 42.99 3.02
381 382 3.771479 AGTCCATAGACACTGATGCTGAA 59.229 43.478 0.00 0.00 46.15 3.02
382 383 3.131755 CAGTCCATAGACACTGATGCTGA 59.868 47.826 0.00 0.00 46.15 4.26
383 384 3.455327 CAGTCCATAGACACTGATGCTG 58.545 50.000 0.00 0.00 46.15 4.41
384 385 2.433604 CCAGTCCATAGACACTGATGCT 59.566 50.000 0.55 0.00 46.15 3.79
385 386 2.169352 ACCAGTCCATAGACACTGATGC 59.831 50.000 0.55 0.00 46.15 3.91
386 387 4.052159 GACCAGTCCATAGACACTGATG 57.948 50.000 0.55 0.00 46.15 3.07
400 401 1.304217 TCGGACAGAGGGACCAGTC 60.304 63.158 0.00 0.00 0.00 3.51
401 402 1.304547 CTCGGACAGAGGGACCAGT 60.305 63.158 0.00 0.00 43.20 4.00
402 403 3.609703 CTCGGACAGAGGGACCAG 58.390 66.667 0.00 0.00 43.20 4.00
416 417 2.329690 CTCTCGCATCCGTCCTCG 59.670 66.667 0.00 0.00 35.54 4.63
417 418 2.725008 CCTCTCGCATCCGTCCTC 59.275 66.667 0.00 0.00 35.54 3.71
435 436 2.663119 GCATCTCCAAACACGCAAATTC 59.337 45.455 0.00 0.00 0.00 2.17
517 519 5.741011 ACTATTTCTCCACCGCTTGATTAA 58.259 37.500 0.00 0.00 0.00 1.40
644 646 7.115378 CACAAGATAGATTGCTTTTGGTTGAAC 59.885 37.037 0.00 0.00 33.28 3.18
680 682 5.324409 TCTATCCAGATTGCTTTTGGTTGT 58.676 37.500 0.00 0.00 33.65 3.32
697 699 5.140747 AGATTACCAACGCTGATCTATCC 57.859 43.478 0.00 0.00 0.00 2.59
698 700 7.767261 AGATAGATTACCAACGCTGATCTATC 58.233 38.462 18.96 18.96 46.89 2.08
699 701 7.710676 AGATAGATTACCAACGCTGATCTAT 57.289 36.000 7.76 7.76 40.74 1.98
700 702 8.101419 TCTAGATAGATTACCAACGCTGATCTA 58.899 37.037 0.00 0.00 34.78 1.98
701 703 6.943146 TCTAGATAGATTACCAACGCTGATCT 59.057 38.462 0.00 0.00 0.00 2.75
702 704 7.147143 TCTAGATAGATTACCAACGCTGATC 57.853 40.000 0.00 0.00 0.00 2.92
703 705 7.613801 AGATCTAGATAGATTACCAACGCTGAT 59.386 37.037 4.89 0.00 42.79 2.90
704 706 6.943146 AGATCTAGATAGATTACCAACGCTGA 59.057 38.462 4.89 0.00 42.79 4.26
705 707 7.151999 AGATCTAGATAGATTACCAACGCTG 57.848 40.000 4.89 0.00 42.79 5.18
706 708 9.116067 GATAGATCTAGATAGATTACCAACGCT 57.884 37.037 4.89 0.00 42.79 5.07
737 739 3.154710 ACGCCGATCTATCCACAAGATA 58.845 45.455 0.00 0.00 36.33 1.98
946 955 1.268539 CCTCGGTGTTTGTTGTTGCTC 60.269 52.381 0.00 0.00 0.00 4.26
972 981 1.092921 CCTCCGACTCCGAGTCAGAG 61.093 65.000 25.77 25.77 45.08 3.35
973 982 1.078356 CCTCCGACTCCGAGTCAGA 60.078 63.158 24.83 18.87 45.30 3.27
974 983 1.078356 TCCTCCGACTCCGAGTCAG 60.078 63.158 24.83 15.87 45.30 3.51
975 984 1.078356 CTCCTCCGACTCCGAGTCA 60.078 63.158 24.83 8.55 45.30 3.41
976 985 1.820481 CCTCCTCCGACTCCGAGTC 60.820 68.421 17.31 17.31 41.71 3.36
977 986 2.272797 CCTCCTCCGACTCCGAGT 59.727 66.667 0.00 0.00 38.22 4.18
981 990 1.755008 CACTCCCTCCTCCGACTCC 60.755 68.421 0.00 0.00 0.00 3.85
1044 1053 1.156645 GCTCAGCCATCACCATCGTC 61.157 60.000 0.00 0.00 0.00 4.20
1045 1054 1.153289 GCTCAGCCATCACCATCGT 60.153 57.895 0.00 0.00 0.00 3.73
1048 1057 2.515523 GCGCTCAGCCATCACCAT 60.516 61.111 0.00 0.00 40.81 3.55
1158 1188 5.986936 AGAAAAAGAAACGTCGAATCCTTC 58.013 37.500 0.00 1.17 0.00 3.46
1334 1374 1.168714 GACGAAGGTAGTACCACGGT 58.831 55.000 28.87 20.07 41.95 4.83
1338 1378 1.180029 GCAGGACGAAGGTAGTACCA 58.820 55.000 21.49 0.00 41.95 3.25
1341 1381 2.366533 CTGAGCAGGACGAAGGTAGTA 58.633 52.381 0.00 0.00 0.00 1.82
1565 1605 0.038526 ATCGTCGCTTCGTCCTTGTT 60.039 50.000 0.00 0.00 0.00 2.83
1568 1608 1.153823 CCATCGTCGCTTCGTCCTT 60.154 57.895 0.00 0.00 0.00 3.36
1899 1960 4.625742 GCGCACTCTTAAGTCTCAATTACA 59.374 41.667 0.30 0.00 31.71 2.41
1903 1964 3.319137 TGCGCACTCTTAAGTCTCAAT 57.681 42.857 5.66 0.00 31.71 2.57
1968 2029 4.212004 CGAGCCATGTACATACATTTCTGG 59.788 45.833 8.32 5.76 43.99 3.86
1986 2047 1.450312 CCCACCATTCTCACGAGCC 60.450 63.158 0.00 0.00 0.00 4.70
2090 2153 4.016444 AGATCAACATTTTACATGGCGGT 58.984 39.130 0.00 0.00 0.00 5.68
2146 2209 5.606348 AGAGGGATGTCTGTTCATACTTC 57.394 43.478 0.00 0.00 35.74 3.01
2147 2210 7.682787 AATAGAGGGATGTCTGTTCATACTT 57.317 36.000 0.00 0.00 0.00 2.24
2148 2211 7.345653 TGAAATAGAGGGATGTCTGTTCATACT 59.654 37.037 0.00 0.00 31.77 2.12
2149 2212 7.500992 TGAAATAGAGGGATGTCTGTTCATAC 58.499 38.462 0.00 0.00 31.77 2.39
2150 2213 7.675161 TGAAATAGAGGGATGTCTGTTCATA 57.325 36.000 0.00 0.00 31.77 2.15
2151 2214 6.566079 TGAAATAGAGGGATGTCTGTTCAT 57.434 37.500 0.00 0.00 31.77 2.57
2152 2215 6.213397 TCTTGAAATAGAGGGATGTCTGTTCA 59.787 38.462 0.00 0.00 33.46 3.18
2195 2258 7.121315 ACGGGGAAATTTCTTCAAGAGAATTAG 59.879 37.037 17.42 0.00 43.65 1.73
2200 2263 4.072131 CACGGGGAAATTTCTTCAAGAGA 58.928 43.478 17.42 0.00 0.00 3.10
2331 2394 9.709495 TTTATCAATCCTTTTCAGTTTTCATGG 57.291 29.630 0.00 0.00 0.00 3.66
2368 2431 1.355381 TGAGCCTTTCCACATCCACAT 59.645 47.619 0.00 0.00 0.00 3.21
2369 2432 0.770499 TGAGCCTTTCCACATCCACA 59.230 50.000 0.00 0.00 0.00 4.17
2370 2433 2.134789 ATGAGCCTTTCCACATCCAC 57.865 50.000 0.00 0.00 0.00 4.02
2371 2434 2.449464 CAATGAGCCTTTCCACATCCA 58.551 47.619 0.00 0.00 0.00 3.41
2372 2435 1.753073 CCAATGAGCCTTTCCACATCC 59.247 52.381 0.00 0.00 0.00 3.51
2373 2436 2.450476 ACCAATGAGCCTTTCCACATC 58.550 47.619 0.00 0.00 0.00 3.06
2391 2454 6.374333 ACATTATGGCGGATTATATGACAACC 59.626 38.462 0.00 0.00 0.00 3.77
2407 2470 7.013655 AGTCTCATATTGGTTTCACATTATGGC 59.986 37.037 0.00 0.00 36.27 4.40
2430 2493 7.035612 AGGAAACAAACAGAAATCAACAAGTC 58.964 34.615 0.00 0.00 0.00 3.01
2443 2506 5.929415 GTCCTTCTCTAGAGGAAACAAACAG 59.071 44.000 19.67 0.00 33.01 3.16
2456 2519 7.934120 TCTCCTTTTCTTTTTGTCCTTCTCTAG 59.066 37.037 0.00 0.00 0.00 2.43
2473 2536 2.939103 CGTGGATCCATGTCTCCTTTTC 59.061 50.000 23.76 3.35 32.47 2.29
2474 2537 2.941415 GCGTGGATCCATGTCTCCTTTT 60.941 50.000 30.22 0.00 35.52 2.27
2476 2539 0.179000 GCGTGGATCCATGTCTCCTT 59.821 55.000 30.22 0.00 35.52 3.36
2479 2542 1.148157 CGTGCGTGGATCCATGTCTC 61.148 60.000 30.22 21.54 35.52 3.36
2480 2543 1.153568 CGTGCGTGGATCCATGTCT 60.154 57.895 30.22 0.00 35.52 3.41
2481 2544 2.173669 CCGTGCGTGGATCCATGTC 61.174 63.158 30.22 23.02 35.52 3.06
2482 2545 2.125147 CCGTGCGTGGATCCATGT 60.125 61.111 30.22 0.00 35.52 3.21
2483 2546 2.896854 CCCGTGCGTGGATCCATG 60.897 66.667 27.02 27.02 36.13 3.66
2484 2547 4.856801 GCCCGTGCGTGGATCCAT 62.857 66.667 19.62 0.00 0.00 3.41
2531 2603 4.433186 TCATTTGCTTTACATTCGGTGG 57.567 40.909 0.00 0.00 0.00 4.61
2550 2622 9.073475 CCATTTCGACCCCTTTTTATAATATCA 57.927 33.333 0.00 0.00 0.00 2.15
2551 2623 9.292195 TCCATTTCGACCCCTTTTTATAATATC 57.708 33.333 0.00 0.00 0.00 1.63
2552 2624 9.649316 TTCCATTTCGACCCCTTTTTATAATAT 57.351 29.630 0.00 0.00 0.00 1.28
2553 2625 9.476928 TTTCCATTTCGACCCCTTTTTATAATA 57.523 29.630 0.00 0.00 0.00 0.98
2554 2626 7.964666 TTCCATTTCGACCCCTTTTTATAAT 57.035 32.000 0.00 0.00 0.00 1.28
2555 2627 7.778185 TTTCCATTTCGACCCCTTTTTATAA 57.222 32.000 0.00 0.00 0.00 0.98
2556 2628 7.964666 ATTTCCATTTCGACCCCTTTTTATA 57.035 32.000 0.00 0.00 0.00 0.98
2557 2629 6.867519 ATTTCCATTTCGACCCCTTTTTAT 57.132 33.333 0.00 0.00 0.00 1.40
2558 2630 7.093684 CCTTATTTCCATTTCGACCCCTTTTTA 60.094 37.037 0.00 0.00 0.00 1.52
2559 2631 6.295632 CCTTATTTCCATTTCGACCCCTTTTT 60.296 38.462 0.00 0.00 0.00 1.94
2564 2636 2.956333 CCCTTATTTCCATTTCGACCCC 59.044 50.000 0.00 0.00 0.00 4.95
2568 2640 7.613801 TGATTTCTTCCCTTATTTCCATTTCGA 59.386 33.333 0.00 0.00 0.00 3.71
2585 2657 5.466728 GGGCTTTTCCACTTTTGATTTCTTC 59.533 40.000 0.00 0.00 36.21 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.