Multiple sequence alignment - TraesCS5D01G404900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G404900 chr5D 100.000 2924 0 0 1 2924 469739043 469736120 0.000000e+00 5400.0
1 TraesCS5D01G404900 chr5D 97.143 35 1 0 2211 2245 340758957 340758923 3.150000e-05 60.2
2 TraesCS5D01G404900 chr5B 87.118 2259 136 65 1 2139 577376668 577374445 0.000000e+00 2416.0
3 TraesCS5D01G404900 chr5B 91.960 398 21 5 2466 2855 577374292 577373898 5.510000e-152 547.0
4 TraesCS5D01G404900 chr5A 89.792 1156 45 27 1057 2166 590696072 590694944 0.000000e+00 1413.0
5 TraesCS5D01G404900 chr5A 88.394 1077 92 16 1 1067 590697323 590696270 0.000000e+00 1266.0
6 TraesCS5D01G404900 chr5A 90.816 294 18 6 2542 2831 590693682 590693394 4.570000e-103 385.0
7 TraesCS5D01G404900 chr5A 92.857 112 6 1 2311 2420 590694886 590694775 8.390000e-36 161.0
8 TraesCS5D01G404900 chr4D 100.000 36 0 0 149 184 462791726 462791761 1.880000e-07 67.6
9 TraesCS5D01G404900 chr6B 96.875 32 0 1 2211 2242 157671016 157671046 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G404900 chr5D 469736120 469739043 2923 True 5400.00 5400 100.00000 1 2924 1 chr5D.!!$R2 2923
1 TraesCS5D01G404900 chr5B 577373898 577376668 2770 True 1481.50 2416 89.53900 1 2855 2 chr5B.!!$R1 2854
2 TraesCS5D01G404900 chr5A 590693394 590697323 3929 True 806.25 1413 90.46475 1 2831 4 chr5A.!!$R1 2830

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
607 641 0.321653 GGGCGTTCACAAGGATGAGT 60.322 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2179 2534 0.030504 CACAGCGCAACCAATGAACA 59.969 50.0 11.47 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.100279 AGTCCTTCGGGTCTTCATTTTT 57.900 40.909 0.00 0.00 36.28 1.94
123 125 3.347411 GTCTGGTATGACGAGGCAC 57.653 57.895 0.00 0.00 28.55 5.01
124 126 0.530744 GTCTGGTATGACGAGGCACA 59.469 55.000 0.00 0.00 28.55 4.57
142 144 3.067106 CACACTCTTGAGCCGTAACATT 58.933 45.455 0.00 0.00 0.00 2.71
143 145 4.242475 CACACTCTTGAGCCGTAACATTA 58.758 43.478 0.00 0.00 0.00 1.90
165 167 8.788813 CATTATCAATTTTCGTAGAAGTTGTGC 58.211 33.333 8.64 0.00 45.90 4.57
181 183 4.700213 AGTTGTGCGTAGGAATAGCAATTT 59.300 37.500 0.00 0.00 42.93 1.82
265 267 5.836705 TCCTATTTGGAAATGAATGGACCA 58.163 37.500 0.00 0.00 42.94 4.02
349 354 7.997107 TGGCTAGTCAAAACACGTATTATAG 57.003 36.000 0.00 0.00 0.00 1.31
351 356 8.685427 TGGCTAGTCAAAACACGTATTATAGTA 58.315 33.333 0.00 0.00 0.00 1.82
388 395 0.912486 ATGGTAGGAGAACAGTGGCC 59.088 55.000 0.00 0.00 0.00 5.36
393 400 1.439543 AGGAGAACAGTGGCCTTCTT 58.560 50.000 3.32 0.00 0.00 2.52
416 426 2.350522 CCCATCAAGGTTCAAGTCGAG 58.649 52.381 0.00 0.00 34.66 4.04
472 482 2.224159 AGCCCTTCCGGTGATGTGT 61.224 57.895 0.00 0.00 0.00 3.72
478 488 2.426522 CTTCCGGTGATGTGTGTTCAT 58.573 47.619 0.00 0.00 0.00 2.57
506 520 6.238266 GAGATCTTTCTGTCGACTACGAAGAT 60.238 42.308 23.78 23.78 41.01 2.40
522 536 5.965922 ACGAAGATGTATGTGATGACTTCA 58.034 37.500 0.00 0.00 34.07 3.02
557 572 1.118965 TGTCCCCGCTCAGTCTTTCA 61.119 55.000 0.00 0.00 0.00 2.69
567 582 1.270826 TCAGTCTTTCAGAGGTGCTCG 59.729 52.381 0.00 0.00 35.36 5.03
589 623 1.135699 GATGTACGGTGTGCGTACGG 61.136 60.000 18.39 1.02 43.40 4.02
607 641 0.321653 GGGCGTTCACAAGGATGAGT 60.322 55.000 0.00 0.00 0.00 3.41
695 752 2.344025 ACTTTCGAAATACGCTGGGAC 58.656 47.619 11.70 0.00 42.26 4.46
760 823 2.590007 CTACCATGCGCAGGCTCC 60.590 66.667 18.18 0.00 40.82 4.70
885 954 4.717313 GGCCCCTCAACCACGGAC 62.717 72.222 0.00 0.00 0.00 4.79
1048 1124 0.980423 AGTTCCAGACTCCTTCCTGC 59.020 55.000 0.00 0.00 31.20 4.85
1049 1125 0.035915 GTTCCAGACTCCTTCCTGCC 60.036 60.000 0.00 0.00 0.00 4.85
1050 1126 0.178891 TTCCAGACTCCTTCCTGCCT 60.179 55.000 0.00 0.00 0.00 4.75
1051 1127 0.906756 TCCAGACTCCTTCCTGCCTG 60.907 60.000 0.00 0.00 0.00 4.85
1203 1494 3.614659 CGCACATCTCGCTGCTCG 61.615 66.667 0.00 0.00 40.15 5.03
1204 1495 2.202663 GCACATCTCGCTGCTCGA 60.203 61.111 0.00 2.03 46.29 4.04
1210 1508 4.447069 CTCGCTGCTCGACGTCGT 62.447 66.667 34.40 0.00 43.16 4.34
1211 1509 4.440987 TCGCTGCTCGACGTCGTC 62.441 66.667 34.40 26.42 43.16 4.20
1426 1729 1.205820 GCGCGCGGTTACTTTTCTT 59.794 52.632 33.06 0.00 0.00 2.52
1428 1731 1.136280 GCGCGCGGTTACTTTTCTTTA 60.136 47.619 33.06 0.00 0.00 1.85
1530 1844 5.334491 CGAGGCCTTTCTTTCTTTCTTTCTC 60.334 44.000 6.77 0.00 0.00 2.87
1531 1845 4.517075 AGGCCTTTCTTTCTTTCTTTCTCG 59.483 41.667 0.00 0.00 0.00 4.04
1535 1857 2.779506 TCTTTCTTTCTTTCTCGGCCC 58.220 47.619 0.00 0.00 0.00 5.80
1536 1858 2.105821 TCTTTCTTTCTTTCTCGGCCCA 59.894 45.455 0.00 0.00 0.00 5.36
1559 1887 2.123425 TCTAATCTCCGGCCGGCT 60.123 61.111 39.89 24.05 34.68 5.52
1924 2266 2.442272 TCCTCAGGGCGGTCTAGC 60.442 66.667 0.00 0.00 0.00 3.42
1951 2298 1.550976 GATCTGGTCTGGTTTCCGAGT 59.449 52.381 0.00 0.00 0.00 4.18
1972 2319 5.901552 AGTTCGTTTGTTTGATGGATTGTT 58.098 33.333 0.00 0.00 0.00 2.83
1974 2321 6.255453 AGTTCGTTTGTTTGATGGATTGTTTG 59.745 34.615 0.00 0.00 0.00 2.93
2015 2363 5.888724 TCATTTCTTTGGTGTGTGTTCCTAA 59.111 36.000 0.00 0.00 0.00 2.69
2016 2364 6.549364 TCATTTCTTTGGTGTGTGTTCCTAAT 59.451 34.615 0.00 0.00 0.00 1.73
2017 2365 6.385649 TTTCTTTGGTGTGTGTTCCTAATC 57.614 37.500 0.00 0.00 0.00 1.75
2023 2371 3.532542 GTGTGTGTTCCTAATCCTAGGC 58.467 50.000 2.96 0.00 44.13 3.93
2060 2412 0.240945 CACGGGCATTCTTGGTTGAC 59.759 55.000 0.00 0.00 0.00 3.18
2141 2496 0.681733 GTGCACTGGACTGGAGAGAA 59.318 55.000 10.32 0.00 0.00 2.87
2166 2521 6.707599 GAAACTGTTTCTACGCTACTGATT 57.292 37.500 22.55 0.00 36.73 2.57
2168 2523 7.813852 AAACTGTTTCTACGCTACTGATTAG 57.186 36.000 0.00 0.00 0.00 1.73
2174 2529 9.695526 TGTTTCTACGCTACTGATTAGTTTAAA 57.304 29.630 0.00 0.00 38.36 1.52
2193 2548 7.754924 AGTTTAAATCTATGTTCATTGGTTGCG 59.245 33.333 0.00 0.00 0.00 4.85
2207 2562 1.676014 GGTTGCGCTGTGGAGAAGTAT 60.676 52.381 9.73 0.00 0.00 2.12
2208 2563 2.418197 GGTTGCGCTGTGGAGAAGTATA 60.418 50.000 9.73 0.00 0.00 1.47
2209 2564 2.579207 TGCGCTGTGGAGAAGTATAC 57.421 50.000 9.73 0.00 0.00 1.47
2227 2582 8.814038 AAGTATACTACTTCCTCGGTAAAGAA 57.186 34.615 5.65 0.00 45.38 2.52
2228 2583 8.814038 AGTATACTACTTCCTCGGTAAAGAAA 57.186 34.615 2.75 0.00 34.86 2.52
2229 2584 9.418839 AGTATACTACTTCCTCGGTAAAGAAAT 57.581 33.333 2.75 0.00 34.86 2.17
2237 2592 7.927092 ACTTCCTCGGTAAAGAAATATAAGAGC 59.073 37.037 0.00 0.00 0.00 4.09
2238 2593 7.356089 TCCTCGGTAAAGAAATATAAGAGCA 57.644 36.000 0.00 0.00 0.00 4.26
2239 2594 7.963532 TCCTCGGTAAAGAAATATAAGAGCAT 58.036 34.615 0.00 0.00 0.00 3.79
2240 2595 8.429641 TCCTCGGTAAAGAAATATAAGAGCATT 58.570 33.333 0.00 0.00 0.00 3.56
2241 2596 9.057089 CCTCGGTAAAGAAATATAAGAGCATTT 57.943 33.333 0.00 0.00 0.00 2.32
2242 2597 9.869844 CTCGGTAAAGAAATATAAGAGCATTTG 57.130 33.333 0.00 0.00 0.00 2.32
2243 2598 8.836413 TCGGTAAAGAAATATAAGAGCATTTGG 58.164 33.333 0.00 0.00 0.00 3.28
2244 2599 8.836413 CGGTAAAGAAATATAAGAGCATTTGGA 58.164 33.333 0.00 0.00 0.00 3.53
2250 2605 9.553064 AGAAATATAAGAGCATTTGGAGTAGTG 57.447 33.333 0.00 0.00 0.00 2.74
2251 2606 9.547753 GAAATATAAGAGCATTTGGAGTAGTGA 57.452 33.333 0.00 0.00 0.00 3.41
2253 2608 9.717942 AATATAAGAGCATTTGGAGTAGTGATC 57.282 33.333 0.00 0.00 0.00 2.92
2254 2609 5.690464 AAGAGCATTTGGAGTAGTGATCT 57.310 39.130 0.00 0.00 38.82 2.75
2255 2610 6.798427 AAGAGCATTTGGAGTAGTGATCTA 57.202 37.500 0.00 0.00 36.43 1.98
2256 2611 6.798427 AGAGCATTTGGAGTAGTGATCTAA 57.202 37.500 0.00 0.00 35.76 2.10
2257 2612 7.187824 AGAGCATTTGGAGTAGTGATCTAAA 57.812 36.000 0.00 0.00 35.76 1.85
2258 2613 7.800092 AGAGCATTTGGAGTAGTGATCTAAAT 58.200 34.615 0.00 0.00 38.08 1.40
2261 2616 7.798596 CATTTGGAGTAGTGATCTAAATGCT 57.201 36.000 10.48 0.00 43.78 3.79
2262 2617 7.859598 CATTTGGAGTAGTGATCTAAATGCTC 58.140 38.462 10.48 0.00 43.78 4.26
2263 2618 5.537300 TGGAGTAGTGATCTAAATGCTCC 57.463 43.478 9.69 9.69 36.79 4.70
2264 2619 5.211973 TGGAGTAGTGATCTAAATGCTCCT 58.788 41.667 15.28 0.00 36.99 3.69
2265 2620 6.373759 TGGAGTAGTGATCTAAATGCTCCTA 58.626 40.000 15.28 3.74 36.99 2.94
2266 2621 6.265649 TGGAGTAGTGATCTAAATGCTCCTAC 59.734 42.308 15.28 0.00 36.99 3.18
2267 2622 6.320494 AGTAGTGATCTAAATGCTCCTACG 57.680 41.667 0.00 0.00 31.26 3.51
2268 2623 5.828859 AGTAGTGATCTAAATGCTCCTACGT 59.171 40.000 0.00 0.00 31.26 3.57
2269 2624 5.599999 AGTGATCTAAATGCTCCTACGTT 57.400 39.130 0.00 0.00 0.00 3.99
2270 2625 5.978814 AGTGATCTAAATGCTCCTACGTTT 58.021 37.500 0.00 0.00 33.46 3.60
2271 2626 6.043411 AGTGATCTAAATGCTCCTACGTTTC 58.957 40.000 0.00 0.00 31.41 2.78
2272 2627 6.043411 GTGATCTAAATGCTCCTACGTTTCT 58.957 40.000 0.00 0.00 31.41 2.52
2273 2628 7.068348 AGTGATCTAAATGCTCCTACGTTTCTA 59.932 37.037 0.00 0.00 31.41 2.10
2274 2629 7.167801 GTGATCTAAATGCTCCTACGTTTCTAC 59.832 40.741 0.00 0.00 31.41 2.59
2275 2630 6.519679 TCTAAATGCTCCTACGTTTCTACA 57.480 37.500 0.00 0.00 31.41 2.74
2276 2631 7.108841 TCTAAATGCTCCTACGTTTCTACAT 57.891 36.000 0.00 0.00 31.41 2.29
2277 2632 7.553334 TCTAAATGCTCCTACGTTTCTACATT 58.447 34.615 0.00 0.00 31.41 2.71
2278 2633 8.038944 TCTAAATGCTCCTACGTTTCTACATTT 58.961 33.333 17.07 17.07 39.21 2.32
2279 2634 6.663944 AATGCTCCTACGTTTCTACATTTC 57.336 37.500 0.00 0.00 0.00 2.17
2280 2635 5.401531 TGCTCCTACGTTTCTACATTTCT 57.598 39.130 0.00 0.00 0.00 2.52
2281 2636 5.790593 TGCTCCTACGTTTCTACATTTCTT 58.209 37.500 0.00 0.00 0.00 2.52
2282 2637 6.228258 TGCTCCTACGTTTCTACATTTCTTT 58.772 36.000 0.00 0.00 0.00 2.52
2283 2638 7.380536 TGCTCCTACGTTTCTACATTTCTTTA 58.619 34.615 0.00 0.00 0.00 1.85
2284 2639 8.038944 TGCTCCTACGTTTCTACATTTCTTTAT 58.961 33.333 0.00 0.00 0.00 1.40
2285 2640 8.880750 GCTCCTACGTTTCTACATTTCTTTATT 58.119 33.333 0.00 0.00 0.00 1.40
2287 2642 9.932207 TCCTACGTTTCTACATTTCTTTATTGA 57.068 29.630 0.00 0.00 0.00 2.57
2290 2645 8.040716 ACGTTTCTACATTTCTTTATTGAGGG 57.959 34.615 0.00 0.00 0.00 4.30
2291 2646 7.881232 ACGTTTCTACATTTCTTTATTGAGGGA 59.119 33.333 0.00 0.00 0.00 4.20
2292 2647 8.391106 CGTTTCTACATTTCTTTATTGAGGGAG 58.609 37.037 0.00 0.00 0.00 4.30
2293 2648 9.232473 GTTTCTACATTTCTTTATTGAGGGAGT 57.768 33.333 0.00 0.00 0.00 3.85
2296 2651 9.268282 TCTACATTTCTTTATTGAGGGAGTAGT 57.732 33.333 0.00 0.00 0.00 2.73
2375 2730 0.090510 GCGCGTAAACAAAATTGCGG 59.909 50.000 8.43 0.00 45.15 5.69
2395 2752 4.307908 GCCGTGCAGAAAACGCGT 62.308 61.111 5.58 5.58 39.69 6.01
2416 2773 2.032377 TCGAGTGCCGAAATTTCAACAC 60.032 45.455 23.40 23.40 45.43 3.32
2421 3631 3.485743 GTGCCGAAATTTCAACACTGAAC 59.514 43.478 23.49 6.71 41.34 3.18
2435 3645 3.774702 GAACGACCGAACCAGCGC 61.775 66.667 0.00 0.00 0.00 5.92
2452 3662 2.546494 GCTGGTATGTGGATGCGGC 61.546 63.158 0.00 0.00 0.00 6.53
2454 3664 1.153188 TGGTATGTGGATGCGGCAG 60.153 57.895 9.25 0.00 0.00 4.85
2471 3681 2.772287 GCAGTAGGTGGCTGATTATCC 58.228 52.381 0.00 0.00 36.12 2.59
2474 3684 2.894126 AGTAGGTGGCTGATTATCCGAG 59.106 50.000 0.00 0.00 0.00 4.63
2486 3698 5.865085 TGATTATCCGAGGGTTTAGGATTG 58.135 41.667 1.32 0.00 41.63 2.67
2500 3712 0.179034 GGATTGAGCTGCTACTGGGG 60.179 60.000 0.15 0.00 0.00 4.96
2507 3719 2.034048 GCTGCTACTGGGGCCTAGTC 62.034 65.000 27.05 13.67 0.00 2.59
2534 3746 1.151668 CCTATCATGCGCTAACTGCC 58.848 55.000 9.73 0.00 38.78 4.85
2551 3763 3.939592 ACTGCCCGTCTTAAATAAGAAGC 59.060 43.478 4.52 8.67 43.30 3.86
2570 3936 4.227134 CCCCACAGAGATCGGCCG 62.227 72.222 22.12 22.12 0.00 6.13
2618 3990 1.378250 CAGAAGCCAAGGCAGGAGG 60.378 63.158 14.40 0.00 44.88 4.30
2668 4040 0.745845 GGCAGGAGATCACATGCGTT 60.746 55.000 20.62 0.00 46.36 4.84
2688 4064 0.461163 CGCGTTGGATACCACATGGA 60.461 55.000 4.53 0.00 38.94 3.41
2730 4106 1.524482 GGACAGAGGATCCACCAGC 59.476 63.158 15.82 0.00 42.04 4.85
2763 4139 3.118454 ATCGCGACCCGTGCTTTG 61.118 61.111 12.93 0.00 37.28 2.77
2833 4210 1.291877 ACGGACTTGCGTTGCTCATC 61.292 55.000 0.00 0.00 0.00 2.92
2848 4225 3.137533 GCTCATCAACTCCTTCCTATGC 58.862 50.000 0.00 0.00 0.00 3.14
2855 4232 4.835615 TCAACTCCTTCCTATGCTCCTATC 59.164 45.833 0.00 0.00 0.00 2.08
2856 4233 4.757997 ACTCCTTCCTATGCTCCTATCT 57.242 45.455 0.00 0.00 0.00 1.98
2857 4234 4.415596 ACTCCTTCCTATGCTCCTATCTG 58.584 47.826 0.00 0.00 0.00 2.90
2858 4235 3.768757 CTCCTTCCTATGCTCCTATCTGG 59.231 52.174 0.00 0.00 37.10 3.86
2859 4236 2.836981 CCTTCCTATGCTCCTATCTGGG 59.163 54.545 0.00 0.00 36.20 4.45
2860 4237 3.503042 CCTTCCTATGCTCCTATCTGGGA 60.503 52.174 0.00 0.00 36.20 4.37
2861 4238 3.923273 TCCTATGCTCCTATCTGGGAA 57.077 47.619 0.00 0.00 34.66 3.97
2862 4239 4.213531 TCCTATGCTCCTATCTGGGAAA 57.786 45.455 0.00 0.00 34.66 3.13
2863 4240 4.767908 TCCTATGCTCCTATCTGGGAAAT 58.232 43.478 0.00 0.00 34.66 2.17
2864 4241 4.533707 TCCTATGCTCCTATCTGGGAAATG 59.466 45.833 0.00 0.00 34.66 2.32
2865 4242 4.288105 CCTATGCTCCTATCTGGGAAATGT 59.712 45.833 0.00 0.00 34.66 2.71
2866 4243 3.565764 TGCTCCTATCTGGGAAATGTG 57.434 47.619 0.00 0.00 34.66 3.21
2867 4244 3.114606 TGCTCCTATCTGGGAAATGTGA 58.885 45.455 0.00 0.00 34.66 3.58
2868 4245 3.718434 TGCTCCTATCTGGGAAATGTGAT 59.282 43.478 0.00 0.00 34.66 3.06
2869 4246 4.166725 TGCTCCTATCTGGGAAATGTGATT 59.833 41.667 0.00 0.00 34.66 2.57
2870 4247 4.759183 GCTCCTATCTGGGAAATGTGATTC 59.241 45.833 0.00 0.00 34.66 2.52
2871 4248 4.960938 TCCTATCTGGGAAATGTGATTCG 58.039 43.478 0.00 0.00 36.20 3.34
2872 4249 3.499918 CCTATCTGGGAAATGTGATTCGC 59.500 47.826 0.00 0.00 41.26 4.70
2873 4250 2.488204 TCTGGGAAATGTGATTCGCA 57.512 45.000 1.78 1.78 46.18 5.10
2874 4251 3.003394 TCTGGGAAATGTGATTCGCAT 57.997 42.857 6.89 6.89 46.81 4.73
2875 4252 2.945008 TCTGGGAAATGTGATTCGCATC 59.055 45.455 12.85 3.04 46.81 3.91
2876 4253 2.947652 CTGGGAAATGTGATTCGCATCT 59.052 45.455 12.85 0.00 46.81 2.90
2877 4254 2.684374 TGGGAAATGTGATTCGCATCTG 59.316 45.455 12.85 0.00 44.33 2.90
2878 4255 2.945008 GGGAAATGTGATTCGCATCTGA 59.055 45.455 12.85 0.00 40.75 3.27
2879 4256 3.242870 GGGAAATGTGATTCGCATCTGAC 60.243 47.826 12.85 4.82 40.75 3.51
2880 4257 3.242870 GGAAATGTGATTCGCATCTGACC 60.243 47.826 12.85 10.03 33.13 4.02
2881 4258 2.696989 ATGTGATTCGCATCTGACCA 57.303 45.000 6.89 0.00 27.31 4.02
2882 4259 1.725641 TGTGATTCGCATCTGACCAC 58.274 50.000 0.00 0.00 0.00 4.16
2883 4260 1.009829 GTGATTCGCATCTGACCACC 58.990 55.000 0.00 0.00 0.00 4.61
2884 4261 0.107703 TGATTCGCATCTGACCACCC 60.108 55.000 0.00 0.00 0.00 4.61
2885 4262 0.107703 GATTCGCATCTGACCACCCA 60.108 55.000 0.00 0.00 0.00 4.51
2886 4263 0.548031 ATTCGCATCTGACCACCCAT 59.452 50.000 0.00 0.00 0.00 4.00
2887 4264 0.392863 TTCGCATCTGACCACCCATG 60.393 55.000 0.00 0.00 0.00 3.66
2899 4276 0.471617 CACCCATGGATCCTCTGACC 59.528 60.000 15.22 0.00 0.00 4.02
2900 4277 0.044702 ACCCATGGATCCTCTGACCA 59.955 55.000 15.22 0.00 38.09 4.02
2901 4278 0.471617 CCCATGGATCCTCTGACCAC 59.528 60.000 15.22 0.00 36.49 4.16
2902 4279 0.471617 CCATGGATCCTCTGACCACC 59.528 60.000 14.23 0.00 36.49 4.61
2903 4280 1.504912 CATGGATCCTCTGACCACCT 58.495 55.000 14.23 0.00 36.49 4.00
2904 4281 1.140452 CATGGATCCTCTGACCACCTG 59.860 57.143 14.23 0.00 36.49 4.00
2905 4282 0.413434 TGGATCCTCTGACCACCTGA 59.587 55.000 14.23 0.00 0.00 3.86
2906 4283 1.203300 TGGATCCTCTGACCACCTGAA 60.203 52.381 14.23 0.00 0.00 3.02
2907 4284 1.484240 GGATCCTCTGACCACCTGAAG 59.516 57.143 3.84 0.00 0.00 3.02
2908 4285 2.461695 GATCCTCTGACCACCTGAAGA 58.538 52.381 0.00 0.00 0.00 2.87
2909 4286 2.398754 TCCTCTGACCACCTGAAGAA 57.601 50.000 0.00 0.00 0.00 2.52
2910 4287 1.971357 TCCTCTGACCACCTGAAGAAC 59.029 52.381 0.00 0.00 0.00 3.01
2911 4288 1.694150 CCTCTGACCACCTGAAGAACA 59.306 52.381 0.00 0.00 0.00 3.18
2912 4289 2.304180 CCTCTGACCACCTGAAGAACAT 59.696 50.000 0.00 0.00 0.00 2.71
2913 4290 3.594134 CTCTGACCACCTGAAGAACATC 58.406 50.000 0.00 0.00 0.00 3.06
2914 4291 2.303022 TCTGACCACCTGAAGAACATCC 59.697 50.000 0.00 0.00 0.00 3.51
2915 4292 1.001974 TGACCACCTGAAGAACATCCG 59.998 52.381 0.00 0.00 0.00 4.18
2916 4293 1.002087 GACCACCTGAAGAACATCCGT 59.998 52.381 0.00 0.00 0.00 4.69
2917 4294 1.420138 ACCACCTGAAGAACATCCGTT 59.580 47.619 0.00 0.00 38.33 4.44
2918 4295 2.158667 ACCACCTGAAGAACATCCGTTT 60.159 45.455 0.00 0.00 34.75 3.60
2919 4296 3.071892 ACCACCTGAAGAACATCCGTTTA 59.928 43.478 0.00 0.00 34.75 2.01
2920 4297 4.069304 CCACCTGAAGAACATCCGTTTAA 58.931 43.478 0.00 0.00 34.75 1.52
2921 4298 4.517453 CCACCTGAAGAACATCCGTTTAAA 59.483 41.667 0.00 0.00 34.75 1.52
2922 4299 5.449304 CACCTGAAGAACATCCGTTTAAAC 58.551 41.667 8.35 8.35 34.75 2.01
2923 4300 5.008217 CACCTGAAGAACATCCGTTTAAACA 59.992 40.000 18.07 0.00 34.75 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.198287 GCCCTCGGCTATCGTACCA 61.198 63.158 0.00 0.00 46.69 3.25
87 89 0.392998 ACGCCAGTCCAAATAGGCTG 60.393 55.000 0.00 0.00 44.85 4.85
88 90 0.107654 GACGCCAGTCCAAATAGGCT 60.108 55.000 0.00 0.00 44.85 4.58
105 107 0.530744 TGTGCCTCGTCATACCAGAC 59.469 55.000 0.00 0.00 35.19 3.51
123 125 5.109210 TGATAATGTTACGGCTCAAGAGTG 58.891 41.667 0.00 0.00 0.00 3.51
124 126 5.339008 TGATAATGTTACGGCTCAAGAGT 57.661 39.130 0.00 0.00 0.00 3.24
142 144 6.146510 ACGCACAACTTCTACGAAAATTGATA 59.853 34.615 0.00 0.00 0.00 2.15
143 145 5.049680 ACGCACAACTTCTACGAAAATTGAT 60.050 36.000 0.00 0.00 0.00 2.57
217 219 7.285783 TCGATATTTAGTTTGAAGGTTCACG 57.714 36.000 0.00 0.00 36.83 4.35
265 267 9.892130 AAAGAACTCATCCTATTCGAAACTAAT 57.108 29.630 0.00 0.00 0.00 1.73
388 395 3.955471 TGAACCTTGATGGGCTAAGAAG 58.045 45.455 0.00 0.00 41.11 2.85
393 400 2.354704 CGACTTGAACCTTGATGGGCTA 60.355 50.000 0.00 0.00 41.11 3.93
416 426 0.944386 ATGCGAACACCAGTGTCAAC 59.056 50.000 3.49 0.00 44.13 3.18
461 471 1.199789 CCAATGAACACACATCACCGG 59.800 52.381 0.00 0.00 0.00 5.28
472 482 4.931601 CGACAGAAAGATCTCCAATGAACA 59.068 41.667 0.00 0.00 32.03 3.18
478 488 4.142665 CGTAGTCGACAGAAAGATCTCCAA 60.143 45.833 19.50 0.00 39.71 3.53
522 536 5.126067 CGGGGACATTATTTTGAGACTGAT 58.874 41.667 0.00 0.00 0.00 2.90
526 540 3.279434 AGCGGGGACATTATTTTGAGAC 58.721 45.455 0.00 0.00 0.00 3.36
589 623 1.523758 AACTCATCCTTGTGAACGCC 58.476 50.000 0.00 0.00 0.00 5.68
607 641 4.948847 AGATGCAGACGCTCATACATAAA 58.051 39.130 0.00 0.00 39.64 1.40
649 683 6.074356 CGATTCGATTTGCAGGTTTTCTTTTT 60.074 34.615 0.00 0.00 0.00 1.94
650 684 5.402270 CGATTCGATTTGCAGGTTTTCTTTT 59.598 36.000 0.00 0.00 0.00 2.27
659 716 3.674423 GAAAGTCGATTCGATTTGCAGG 58.326 45.455 16.17 0.00 36.07 4.85
708 765 0.036952 AGTGGTCTGGACGCTTGATG 60.037 55.000 0.00 0.00 0.00 3.07
760 823 0.452618 ATTTGCAACATCGCGACACG 60.453 50.000 12.93 5.58 45.62 4.49
765 828 1.181514 CGTCGATTTGCAACATCGCG 61.182 55.000 25.73 25.43 42.73 5.87
839 903 2.820787 CGTGGGATCTAGATCTACCACC 59.179 54.545 33.28 25.23 42.32 4.61
840 904 2.820787 CCGTGGGATCTAGATCTACCAC 59.179 54.545 31.69 31.69 42.10 4.16
841 905 2.225041 CCCGTGGGATCTAGATCTACCA 60.225 54.545 27.65 23.95 37.92 3.25
1203 1494 1.424635 CTCTTCCTCCGACGACGTC 59.575 63.158 18.04 18.04 37.88 4.34
1204 1495 2.039405 CCTCTTCCTCCGACGACGT 61.039 63.158 0.00 0.00 37.88 4.34
1210 1508 2.440430 CCTCGCCTCTTCCTCCGA 60.440 66.667 0.00 0.00 0.00 4.55
1211 1509 3.532155 CCCTCGCCTCTTCCTCCG 61.532 72.222 0.00 0.00 0.00 4.63
1212 1510 2.364448 ACCCTCGCCTCTTCCTCC 60.364 66.667 0.00 0.00 0.00 4.30
1301 1599 0.456312 GATCTTGTTCGCCGTCGTCT 60.456 55.000 0.00 0.00 36.96 4.18
1405 1703 3.567383 AAAAGTAACCGCGCGCGTG 62.567 57.895 45.51 37.57 37.81 5.34
1406 1704 3.285776 GAAAAGTAACCGCGCGCGT 62.286 57.895 45.51 33.39 37.81 6.01
1422 1720 3.703420 GAGCTCGAAGGCGTATAAAGAA 58.297 45.455 0.00 0.00 38.98 2.52
1423 1721 2.286831 CGAGCTCGAAGGCGTATAAAGA 60.287 50.000 32.06 0.00 43.02 2.52
1426 1729 1.302366 TCGAGCTCGAAGGCGTATAA 58.698 50.000 35.16 9.62 46.30 0.98
1428 1731 3.823402 TCGAGCTCGAAGGCGTAT 58.177 55.556 35.16 0.00 46.30 3.06
1530 1844 3.665190 GGAGATTAGAGTATTTGGGCCG 58.335 50.000 0.00 0.00 0.00 6.13
1531 1845 3.557264 CCGGAGATTAGAGTATTTGGGCC 60.557 52.174 0.00 0.00 0.00 5.80
1535 1857 3.318017 CGGCCGGAGATTAGAGTATTTG 58.682 50.000 20.10 0.00 0.00 2.32
1536 1858 2.299297 CCGGCCGGAGATTAGAGTATTT 59.701 50.000 41.82 0.00 37.50 1.40
1924 2266 0.757188 ACCAGACCAGATCGGCTAGG 60.757 60.000 3.85 5.70 39.03 3.02
1951 2298 5.521735 CCAAACAATCCATCAAACAAACGAA 59.478 36.000 0.00 0.00 0.00 3.85
1972 2319 4.191804 TGAAGAAATGGGGAAACTCCAA 57.808 40.909 0.00 0.00 38.64 3.53
1974 2321 5.481824 AGAAATGAAGAAATGGGGAAACTCC 59.518 40.000 0.00 0.00 35.23 3.85
2023 2371 2.145397 TGGCACTACCACTCTCCTAG 57.855 55.000 0.00 0.00 46.36 3.02
2048 2396 2.038557 ACACCGCTAGTCAACCAAGAAT 59.961 45.455 0.00 0.00 0.00 2.40
2060 2412 1.705337 CCGCAAATCCACACCGCTAG 61.705 60.000 0.00 0.00 0.00 3.42
2168 2523 7.462724 GCGCAACCAATGAACATAGATTTAAAC 60.463 37.037 0.30 0.00 0.00 2.01
2174 2529 3.065786 CAGCGCAACCAATGAACATAGAT 59.934 43.478 11.47 0.00 0.00 1.98
2176 2531 2.162208 ACAGCGCAACCAATGAACATAG 59.838 45.455 11.47 0.00 0.00 2.23
2178 2533 0.961019 ACAGCGCAACCAATGAACAT 59.039 45.000 11.47 0.00 0.00 2.71
2179 2534 0.030504 CACAGCGCAACCAATGAACA 59.969 50.000 11.47 0.00 0.00 3.18
2186 2541 1.597854 CTTCTCCACAGCGCAACCA 60.598 57.895 11.47 0.00 0.00 3.67
2187 2542 0.320421 TACTTCTCCACAGCGCAACC 60.320 55.000 11.47 0.00 0.00 3.77
2214 2569 7.356089 TGCTCTTATATTTCTTTACCGAGGA 57.644 36.000 0.00 0.00 0.00 3.71
2215 2570 8.608844 AATGCTCTTATATTTCTTTACCGAGG 57.391 34.615 0.00 0.00 0.00 4.63
2216 2571 9.869844 CAAATGCTCTTATATTTCTTTACCGAG 57.130 33.333 0.00 0.00 0.00 4.63
2218 2573 8.836413 TCCAAATGCTCTTATATTTCTTTACCG 58.164 33.333 0.00 0.00 0.00 4.02
2224 2579 9.553064 CACTACTCCAAATGCTCTTATATTTCT 57.447 33.333 0.00 0.00 0.00 2.52
2225 2580 9.547753 TCACTACTCCAAATGCTCTTATATTTC 57.452 33.333 0.00 0.00 0.00 2.17
2227 2582 9.717942 GATCACTACTCCAAATGCTCTTATATT 57.282 33.333 0.00 0.00 0.00 1.28
2228 2583 9.099071 AGATCACTACTCCAAATGCTCTTATAT 57.901 33.333 0.00 0.00 0.00 0.86
2229 2584 8.484214 AGATCACTACTCCAAATGCTCTTATA 57.516 34.615 0.00 0.00 0.00 0.98
2230 2585 7.372260 AGATCACTACTCCAAATGCTCTTAT 57.628 36.000 0.00 0.00 0.00 1.73
2231 2586 6.798427 AGATCACTACTCCAAATGCTCTTA 57.202 37.500 0.00 0.00 0.00 2.10
2233 2588 6.798427 TTAGATCACTACTCCAAATGCTCT 57.202 37.500 0.00 0.00 0.00 4.09
2234 2589 7.519649 GCATTTAGATCACTACTCCAAATGCTC 60.520 40.741 17.35 0.00 42.93 4.26
2235 2590 6.261826 GCATTTAGATCACTACTCCAAATGCT 59.738 38.462 17.35 0.00 42.93 3.79
2236 2591 6.261826 AGCATTTAGATCACTACTCCAAATGC 59.738 38.462 17.06 17.06 44.57 3.56
2237 2592 7.041508 GGAGCATTTAGATCACTACTCCAAATG 60.042 40.741 12.12 0.00 37.73 2.32
2238 2593 6.995091 GGAGCATTTAGATCACTACTCCAAAT 59.005 38.462 12.12 0.00 37.73 2.32
2239 2594 6.156949 AGGAGCATTTAGATCACTACTCCAAA 59.843 38.462 16.77 0.00 39.02 3.28
2240 2595 5.663106 AGGAGCATTTAGATCACTACTCCAA 59.337 40.000 16.77 0.00 39.02 3.53
2241 2596 5.211973 AGGAGCATTTAGATCACTACTCCA 58.788 41.667 16.77 0.00 39.02 3.86
2242 2597 5.799827 AGGAGCATTTAGATCACTACTCC 57.200 43.478 10.03 10.03 37.91 3.85
2243 2598 6.016943 ACGTAGGAGCATTTAGATCACTACTC 60.017 42.308 0.00 0.00 35.80 2.59
2244 2599 5.828859 ACGTAGGAGCATTTAGATCACTACT 59.171 40.000 0.00 0.00 35.80 2.57
2245 2600 6.074544 ACGTAGGAGCATTTAGATCACTAC 57.925 41.667 0.00 0.00 35.20 2.73
2246 2601 6.710597 AACGTAGGAGCATTTAGATCACTA 57.289 37.500 0.00 0.00 33.23 2.74
2247 2602 5.599999 AACGTAGGAGCATTTAGATCACT 57.400 39.130 0.00 0.00 33.23 3.41
2248 2603 6.043411 AGAAACGTAGGAGCATTTAGATCAC 58.957 40.000 0.00 0.00 33.23 3.06
2249 2604 6.222038 AGAAACGTAGGAGCATTTAGATCA 57.778 37.500 0.00 0.00 33.23 2.92
2250 2605 7.201145 TGTAGAAACGTAGGAGCATTTAGATC 58.799 38.462 0.00 0.00 0.00 2.75
2251 2606 7.108841 TGTAGAAACGTAGGAGCATTTAGAT 57.891 36.000 0.00 0.00 0.00 1.98
2252 2607 6.519679 TGTAGAAACGTAGGAGCATTTAGA 57.480 37.500 0.00 0.00 0.00 2.10
2253 2608 7.772332 AATGTAGAAACGTAGGAGCATTTAG 57.228 36.000 0.00 0.00 0.00 1.85
2254 2609 8.038944 AGAAATGTAGAAACGTAGGAGCATTTA 58.961 33.333 15.35 0.00 36.04 1.40
2255 2610 6.879458 AGAAATGTAGAAACGTAGGAGCATTT 59.121 34.615 15.32 15.32 37.81 2.32
2256 2611 6.407202 AGAAATGTAGAAACGTAGGAGCATT 58.593 36.000 0.00 0.00 0.00 3.56
2257 2612 5.978814 AGAAATGTAGAAACGTAGGAGCAT 58.021 37.500 0.00 0.00 0.00 3.79
2258 2613 5.401531 AGAAATGTAGAAACGTAGGAGCA 57.598 39.130 0.00 0.00 0.00 4.26
2259 2614 6.723131 AAAGAAATGTAGAAACGTAGGAGC 57.277 37.500 0.00 0.00 0.00 4.70
2261 2616 9.932207 TCAATAAAGAAATGTAGAAACGTAGGA 57.068 29.630 0.00 0.00 0.00 2.94
2264 2619 9.158233 CCCTCAATAAAGAAATGTAGAAACGTA 57.842 33.333 0.00 0.00 0.00 3.57
2265 2620 7.881232 TCCCTCAATAAAGAAATGTAGAAACGT 59.119 33.333 0.00 0.00 0.00 3.99
2266 2621 8.263940 TCCCTCAATAAAGAAATGTAGAAACG 57.736 34.615 0.00 0.00 0.00 3.60
2267 2622 9.232473 ACTCCCTCAATAAAGAAATGTAGAAAC 57.768 33.333 0.00 0.00 0.00 2.78
2270 2625 9.268282 ACTACTCCCTCAATAAAGAAATGTAGA 57.732 33.333 0.00 0.00 0.00 2.59
2283 2638 8.557450 ACCATACAAAAATACTACTCCCTCAAT 58.443 33.333 0.00 0.00 0.00 2.57
2284 2639 7.924541 ACCATACAAAAATACTACTCCCTCAA 58.075 34.615 0.00 0.00 0.00 3.02
2285 2640 7.504926 ACCATACAAAAATACTACTCCCTCA 57.495 36.000 0.00 0.00 0.00 3.86
2286 2641 8.803397 AAACCATACAAAAATACTACTCCCTC 57.197 34.615 0.00 0.00 0.00 4.30
2287 2642 7.551617 CGAAACCATACAAAAATACTACTCCCT 59.448 37.037 0.00 0.00 0.00 4.20
2288 2643 7.201670 CCGAAACCATACAAAAATACTACTCCC 60.202 40.741 0.00 0.00 0.00 4.30
2289 2644 7.677982 GCCGAAACCATACAAAAATACTACTCC 60.678 40.741 0.00 0.00 0.00 3.85
2290 2645 7.148373 TGCCGAAACCATACAAAAATACTACTC 60.148 37.037 0.00 0.00 0.00 2.59
2291 2646 6.655848 TGCCGAAACCATACAAAAATACTACT 59.344 34.615 0.00 0.00 0.00 2.57
2292 2647 6.744082 GTGCCGAAACCATACAAAAATACTAC 59.256 38.462 0.00 0.00 0.00 2.73
2293 2648 6.402334 CGTGCCGAAACCATACAAAAATACTA 60.402 38.462 0.00 0.00 0.00 1.82
2294 2649 5.618195 CGTGCCGAAACCATACAAAAATACT 60.618 40.000 0.00 0.00 0.00 2.12
2295 2650 4.555747 CGTGCCGAAACCATACAAAAATAC 59.444 41.667 0.00 0.00 0.00 1.89
2296 2651 4.379603 CCGTGCCGAAACCATACAAAAATA 60.380 41.667 0.00 0.00 0.00 1.40
2297 2652 3.570559 CGTGCCGAAACCATACAAAAAT 58.429 40.909 0.00 0.00 0.00 1.82
2302 2657 2.036006 GCCGTGCCGAAACCATACA 61.036 57.895 0.00 0.00 0.00 2.29
2305 2660 3.055719 CAGCCGTGCCGAAACCAT 61.056 61.111 0.00 0.00 0.00 3.55
2346 2701 1.510204 TTTACGCGCGCAAATTCCG 60.510 52.632 32.58 15.32 0.00 4.30
2374 2729 1.154225 CGTTTTCTGCACGGCATCC 60.154 57.895 0.00 0.00 38.13 3.51
2375 2730 1.797537 GCGTTTTCTGCACGGCATC 60.798 57.895 0.00 0.00 38.13 3.91
2406 2763 3.199677 TCGGTCGTTCAGTGTTGAAATT 58.800 40.909 0.00 0.00 44.49 1.82
2416 2773 2.372690 CGCTGGTTCGGTCGTTCAG 61.373 63.158 0.00 0.00 0.00 3.02
2435 3645 1.153188 TGCCGCATCCACATACCAG 60.153 57.895 0.00 0.00 0.00 4.00
2443 3653 2.584064 CACCTACTGCCGCATCCA 59.416 61.111 0.00 0.00 0.00 3.41
2445 3655 2.897350 GCCACCTACTGCCGCATC 60.897 66.667 0.00 0.00 0.00 3.91
2452 3662 2.628178 TCGGATAATCAGCCACCTACTG 59.372 50.000 0.00 0.00 36.44 2.74
2454 3664 2.028930 CCTCGGATAATCAGCCACCTAC 60.029 54.545 0.00 0.00 0.00 3.18
2471 3681 2.555199 CAGCTCAATCCTAAACCCTCG 58.445 52.381 0.00 0.00 0.00 4.63
2474 3684 2.426842 AGCAGCTCAATCCTAAACCC 57.573 50.000 0.00 0.00 0.00 4.11
2486 3698 1.753368 CTAGGCCCCAGTAGCAGCTC 61.753 65.000 0.00 0.00 0.00 4.09
2500 3712 4.101645 TGATAGGACTACTGGACTAGGC 57.898 50.000 0.00 0.00 0.00 3.93
2507 3719 1.615883 AGCGCATGATAGGACTACTGG 59.384 52.381 11.47 0.00 0.00 4.00
2534 3746 4.127907 GGGGAGCTTCTTATTTAAGACGG 58.872 47.826 0.00 0.00 41.64 4.79
2551 3763 2.801631 GGCCGATCTCTGTGGGGAG 61.802 68.421 0.00 0.00 34.88 4.30
2570 3936 4.083862 GTCCTCAGGCCGGTCACC 62.084 72.222 9.71 0.00 0.00 4.02
2668 4040 0.461163 CCATGTGGTATCCAACGCGA 60.461 55.000 15.93 0.00 34.18 5.87
2688 4064 1.366111 CGATCCGCATTGAAACCGGT 61.366 55.000 0.00 0.00 42.48 5.28
2730 4106 3.124466 TCGCGATGTAAACAAATGTGGAG 59.876 43.478 3.71 0.00 0.00 3.86
2763 4139 1.212751 GCCCACAAATGAAGACGGC 59.787 57.895 0.00 0.00 0.00 5.68
2833 4210 4.837860 AGATAGGAGCATAGGAAGGAGTTG 59.162 45.833 0.00 0.00 0.00 3.16
2846 4223 3.114606 TCACATTTCCCAGATAGGAGCA 58.885 45.455 0.00 0.00 41.22 4.26
2848 4225 4.993584 CGAATCACATTTCCCAGATAGGAG 59.006 45.833 0.00 0.00 41.22 3.69
2855 4232 2.947652 AGATGCGAATCACATTTCCCAG 59.052 45.455 6.08 0.00 0.00 4.45
2856 4233 2.684374 CAGATGCGAATCACATTTCCCA 59.316 45.455 6.08 0.00 0.00 4.37
2857 4234 2.945008 TCAGATGCGAATCACATTTCCC 59.055 45.455 6.08 0.00 0.00 3.97
2858 4235 3.242870 GGTCAGATGCGAATCACATTTCC 60.243 47.826 6.08 0.00 0.00 3.13
2859 4236 3.374988 TGGTCAGATGCGAATCACATTTC 59.625 43.478 6.08 0.00 0.00 2.17
2860 4237 3.127548 GTGGTCAGATGCGAATCACATTT 59.872 43.478 6.08 0.00 0.00 2.32
2861 4238 2.679837 GTGGTCAGATGCGAATCACATT 59.320 45.455 6.08 0.00 0.00 2.71
2862 4239 2.283298 GTGGTCAGATGCGAATCACAT 58.717 47.619 6.08 0.00 0.00 3.21
2863 4240 1.675714 GGTGGTCAGATGCGAATCACA 60.676 52.381 6.08 0.00 0.00 3.58
2864 4241 1.009829 GGTGGTCAGATGCGAATCAC 58.990 55.000 6.08 0.00 0.00 3.06
2865 4242 0.107703 GGGTGGTCAGATGCGAATCA 60.108 55.000 6.08 0.00 0.00 2.57
2866 4243 0.107703 TGGGTGGTCAGATGCGAATC 60.108 55.000 0.00 0.00 0.00 2.52
2867 4244 0.548031 ATGGGTGGTCAGATGCGAAT 59.452 50.000 0.00 0.00 0.00 3.34
2868 4245 0.392863 CATGGGTGGTCAGATGCGAA 60.393 55.000 0.00 0.00 0.00 4.70
2869 4246 1.221566 CATGGGTGGTCAGATGCGA 59.778 57.895 0.00 0.00 0.00 5.10
2870 4247 1.820906 CCATGGGTGGTCAGATGCG 60.821 63.158 2.85 0.00 40.83 4.73
2871 4248 0.184451 ATCCATGGGTGGTCAGATGC 59.816 55.000 13.02 0.00 46.16 3.91
2872 4249 1.202855 GGATCCATGGGTGGTCAGATG 60.203 57.143 13.02 0.00 46.16 2.90
2873 4250 1.143813 GGATCCATGGGTGGTCAGAT 58.856 55.000 13.02 0.00 46.16 2.90
2874 4251 0.044702 AGGATCCATGGGTGGTCAGA 59.955 55.000 15.82 0.00 46.16 3.27
2875 4252 0.471617 GAGGATCCATGGGTGGTCAG 59.528 60.000 15.82 0.00 46.16 3.51
2876 4253 0.044702 AGAGGATCCATGGGTGGTCA 59.955 55.000 15.82 0.00 46.16 4.02
2877 4254 0.471617 CAGAGGATCCATGGGTGGTC 59.528 60.000 15.82 3.29 46.16 4.02
2878 4255 0.044702 TCAGAGGATCCATGGGTGGT 59.955 55.000 15.82 0.00 46.16 4.16
2880 4257 0.471617 GGTCAGAGGATCCATGGGTG 59.528 60.000 15.82 3.58 33.66 4.61
2881 4258 0.044702 TGGTCAGAGGATCCATGGGT 59.955 55.000 15.82 3.70 33.66 4.51
2882 4259 0.471617 GTGGTCAGAGGATCCATGGG 59.528 60.000 15.82 0.12 33.66 4.00
2883 4260 0.471617 GGTGGTCAGAGGATCCATGG 59.528 60.000 15.82 4.97 33.66 3.66
2884 4261 1.140452 CAGGTGGTCAGAGGATCCATG 59.860 57.143 15.82 12.51 33.66 3.66
2885 4262 1.008815 TCAGGTGGTCAGAGGATCCAT 59.991 52.381 15.82 0.00 33.66 3.41
2886 4263 0.413434 TCAGGTGGTCAGAGGATCCA 59.587 55.000 15.82 0.00 33.66 3.41
2887 4264 1.484240 CTTCAGGTGGTCAGAGGATCC 59.516 57.143 2.48 2.48 33.66 3.36
2888 4265 2.461695 TCTTCAGGTGGTCAGAGGATC 58.538 52.381 0.00 0.00 0.00 3.36
2889 4266 2.569404 GTTCTTCAGGTGGTCAGAGGAT 59.431 50.000 0.00 0.00 0.00 3.24
2890 4267 1.971357 GTTCTTCAGGTGGTCAGAGGA 59.029 52.381 0.00 0.00 0.00 3.71
2891 4268 1.694150 TGTTCTTCAGGTGGTCAGAGG 59.306 52.381 0.00 0.00 0.00 3.69
2892 4269 3.594134 GATGTTCTTCAGGTGGTCAGAG 58.406 50.000 0.00 0.00 0.00 3.35
2893 4270 2.303022 GGATGTTCTTCAGGTGGTCAGA 59.697 50.000 0.00 0.00 0.00 3.27
2894 4271 2.704572 GGATGTTCTTCAGGTGGTCAG 58.295 52.381 0.00 0.00 0.00 3.51
2895 4272 1.001974 CGGATGTTCTTCAGGTGGTCA 59.998 52.381 0.00 0.00 0.00 4.02
2896 4273 1.002087 ACGGATGTTCTTCAGGTGGTC 59.998 52.381 0.00 0.00 0.00 4.02
2897 4274 1.056660 ACGGATGTTCTTCAGGTGGT 58.943 50.000 0.00 0.00 0.00 4.16
2898 4275 2.185004 AACGGATGTTCTTCAGGTGG 57.815 50.000 0.00 0.00 30.83 4.61
2899 4276 5.008217 TGTTTAAACGGATGTTCTTCAGGTG 59.992 40.000 13.45 0.00 37.31 4.00
2900 4277 5.127491 TGTTTAAACGGATGTTCTTCAGGT 58.873 37.500 13.45 0.00 37.31 4.00
2901 4278 5.682943 TGTTTAAACGGATGTTCTTCAGG 57.317 39.130 13.45 0.00 37.31 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.