Multiple sequence alignment - TraesCS5D01G404400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G404400 chr5D 100.000 4517 0 0 1 4517 469512981 469508465 0.000000e+00 8342.0
1 TraesCS5D01G404400 chr5D 91.831 355 23 5 198 550 267427540 267427890 1.460000e-134 490.0
2 TraesCS5D01G404400 chr5D 91.209 364 24 7 196 556 465598077 465598435 5.250000e-134 488.0
3 TraesCS5D01G404400 chr5D 91.573 356 23 6 203 556 500822600 500822250 6.790000e-133 484.0
4 TraesCS5D01G404400 chr5D 95.082 183 8 1 2583 2764 294629199 294629381 2.060000e-73 287.0
5 TraesCS5D01G404400 chr5D 88.506 87 8 2 3 88 361646054 361645969 2.220000e-18 104.0
6 TraesCS5D01G404400 chr5A 88.937 2079 92 38 560 2581 590580349 590578352 0.000000e+00 2438.0
7 TraesCS5D01G404400 chr5A 91.620 1778 56 34 2781 4517 590578338 590576613 0.000000e+00 2372.0
8 TraesCS5D01G404400 chr5A 92.416 356 21 5 203 556 172543059 172543410 1.880000e-138 503.0
9 TraesCS5D01G404400 chr5B 90.128 1408 76 26 582 1960 577242179 577240806 0.000000e+00 1772.0
10 TraesCS5D01G404400 chr5B 94.229 849 34 7 3384 4220 577235197 577234352 0.000000e+00 1282.0
11 TraesCS5D01G404400 chr5B 95.440 614 26 1 2781 3394 577240008 577239397 0.000000e+00 977.0
12 TraesCS5D01G404400 chr5B 90.144 416 19 7 2184 2581 577240433 577240022 5.180000e-144 521.0
13 TraesCS5D01G404400 chr5B 96.800 250 5 1 1941 2187 577240794 577240545 9.040000e-112 414.0
14 TraesCS5D01G404400 chr5B 90.033 301 8 1 4217 4517 577234195 577233917 1.980000e-98 370.0
15 TraesCS5D01G404400 chr5B 89.474 190 11 7 18 205 577242479 577242297 9.770000e-57 231.0
16 TraesCS5D01G404400 chr1A 94.813 347 15 2 203 548 41159414 41159070 5.140000e-149 538.0
17 TraesCS5D01G404400 chr2D 93.182 352 17 6 201 551 442138501 442138846 1.120000e-140 510.0
18 TraesCS5D01G404400 chr2D 96.610 177 4 2 2578 2753 409575399 409575574 4.420000e-75 292.0
19 TraesCS5D01G404400 chr2D 96.610 177 4 2 2578 2753 409575843 409576018 4.420000e-75 292.0
20 TraesCS5D01G404400 chr2D 94.086 186 10 1 2569 2753 641099383 641099198 9.570000e-72 281.0
21 TraesCS5D01G404400 chr2D 88.000 75 8 1 5 78 308021640 308021566 2.240000e-13 87.9
22 TraesCS5D01G404400 chr2B 92.593 351 21 5 203 552 168840871 168840525 2.430000e-137 499.0
23 TraesCS5D01G404400 chr2B 88.321 137 14 2 2905 3040 386594520 386594655 3.620000e-36 163.0
24 TraesCS5D01G404400 chr2B 87.302 126 14 2 2007 2131 386593119 386593243 4.710000e-30 143.0
25 TraesCS5D01G404400 chr3D 92.286 350 22 5 203 550 177060417 177060071 4.060000e-135 492.0
26 TraesCS5D01G404400 chr3D 98.795 166 2 0 2590 2755 548009671 548009836 3.420000e-76 296.0
27 TraesCS5D01G404400 chr3D 96.591 176 6 0 2587 2762 402850799 402850624 4.420000e-75 292.0
28 TraesCS5D01G404400 chr7D 91.185 363 25 6 197 556 81101433 81101791 1.890000e-133 486.0
29 TraesCS5D01G404400 chrUn 98.214 168 3 0 2587 2754 131947807 131947974 1.230000e-75 294.0
30 TraesCS5D01G404400 chr4D 96.591 176 5 1 2579 2754 113186974 113187148 1.590000e-74 291.0
31 TraesCS5D01G404400 chr6D 96.571 175 5 1 2590 2763 388941059 388940885 5.720000e-74 289.0
32 TraesCS5D01G404400 chr2A 87.591 137 15 2 2905 3040 413073135 413073000 1.680000e-34 158.0
33 TraesCS5D01G404400 chr1B 87.356 87 9 2 3 88 402171223 402171308 1.030000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G404400 chr5D 469508465 469512981 4516 True 8342 8342 100.0000 1 4517 1 chr5D.!!$R2 4516
1 TraesCS5D01G404400 chr5A 590576613 590580349 3736 True 2405 2438 90.2785 560 4517 2 chr5A.!!$R1 3957
2 TraesCS5D01G404400 chr5B 577233917 577235197 1280 True 826 1282 92.1310 3384 4517 2 chr5B.!!$R1 1133
3 TraesCS5D01G404400 chr5B 577239397 577242479 3082 True 783 1772 92.3972 18 3394 5 chr5B.!!$R2 3376
4 TraesCS5D01G404400 chr2D 409575399 409576018 619 False 292 292 96.6100 2578 2753 2 chr2D.!!$F2 175

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 332 0.032615 TTGCAACAAGACCCCCAGTT 60.033 50.0 0.00 0.0 0.00 3.16 F
341 343 0.040204 CCCCCAGTTCTTGCTCCAAT 59.960 55.0 0.00 0.0 0.00 3.16 F
1478 1620 0.098376 CCTCTCATCTTTGCTTGCGC 59.902 55.0 0.00 0.0 0.00 6.09 F
1773 1925 0.429736 GCGCGTGCGTACTATACATG 59.570 55.0 16.27 0.0 42.09 3.21 F
3203 3532 0.520404 CGTCTTTGCAGCAGCTCAAT 59.480 50.0 1.76 0.0 42.74 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1664 1815 0.555769 AACAAGGAACCCAAGAGGCA 59.444 50.000 0.0 0.0 40.58 4.75 R
1995 2181 1.003355 CGCTTCTGCCCCTTCTTCA 60.003 57.895 0.0 0.0 35.36 3.02 R
3267 3596 0.245539 GGAGGAACCAACGATGACGA 59.754 55.000 0.0 0.0 39.65 4.20 R
3410 3744 3.387699 GTGGGGGAAATATGTTTGGATGG 59.612 47.826 0.0 0.0 0.00 3.51 R
4322 4860 3.634448 AGAGAGAGAGAGAGAGAGAGTCG 59.366 52.174 0.0 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 8.334263 TGATTGAATTTATGCGCCATCTATTA 57.666 30.769 4.18 0.00 0.00 0.98
73 74 8.453320 TGATTGAATTTATGCGCCATCTATTAG 58.547 33.333 4.18 0.00 0.00 1.73
76 77 4.901197 TTTATGCGCCATCTATTAGGGA 57.099 40.909 4.18 0.00 0.00 4.20
77 78 2.770164 ATGCGCCATCTATTAGGGAC 57.230 50.000 4.18 0.00 0.00 4.46
85 87 4.017808 CCATCTATTAGGGACGGAGGTAG 58.982 52.174 0.00 0.00 0.00 3.18
96 98 4.576873 GGGACGGAGGTAGTAGTAACTAAC 59.423 50.000 0.00 0.00 44.92 2.34
137 139 0.240678 ATTTCGCGCATCAAAGTGCA 59.759 45.000 8.75 0.00 45.30 4.57
158 160 4.673580 GCACCAATATCATGATTCCATCGC 60.674 45.833 14.65 7.22 0.00 4.58
175 177 3.443045 CAGGTGGGCAATGGCGAC 61.443 66.667 13.21 13.21 42.47 5.19
186 188 3.694746 TGGCGACACTGGTAGAGG 58.305 61.111 0.00 0.00 33.40 3.69
187 189 2.184579 GGCGACACTGGTAGAGGC 59.815 66.667 0.00 0.00 0.00 4.70
188 190 2.184579 GCGACACTGGTAGAGGCC 59.815 66.667 0.00 0.00 0.00 5.19
189 191 2.646175 GCGACACTGGTAGAGGCCA 61.646 63.158 5.01 0.00 36.97 5.36
195 197 4.989458 TGGTAGAGGCCAGGAACA 57.011 55.556 5.01 0.00 33.97 3.18
205 207 5.136105 AGAGGCCAGGAACATTTTCATATC 58.864 41.667 5.01 0.00 32.80 1.63
206 208 5.103771 AGAGGCCAGGAACATTTTCATATCT 60.104 40.000 5.01 0.00 32.80 1.98
207 209 5.136105 AGGCCAGGAACATTTTCATATCTC 58.864 41.667 5.01 0.00 32.80 2.75
208 210 5.103771 AGGCCAGGAACATTTTCATATCTCT 60.104 40.000 5.01 0.00 32.80 3.10
209 211 6.101734 AGGCCAGGAACATTTTCATATCTCTA 59.898 38.462 5.01 0.00 32.80 2.43
210 212 6.205658 GGCCAGGAACATTTTCATATCTCTAC 59.794 42.308 0.00 0.00 32.80 2.59
211 213 6.995091 GCCAGGAACATTTTCATATCTCTACT 59.005 38.462 0.00 0.00 32.80 2.57
212 214 7.172361 GCCAGGAACATTTTCATATCTCTACTC 59.828 40.741 0.00 0.00 32.80 2.59
213 215 7.659390 CCAGGAACATTTTCATATCTCTACTCC 59.341 40.741 0.00 0.00 32.80 3.85
214 216 8.428063 CAGGAACATTTTCATATCTCTACTCCT 58.572 37.037 0.00 0.00 32.80 3.69
215 217 9.661954 AGGAACATTTTCATATCTCTACTCCTA 57.338 33.333 0.00 0.00 32.80 2.94
229 231 9.930158 ATCTCTACTCCTATAAAAGACTCAGTT 57.070 33.333 0.00 0.00 0.00 3.16
230 232 9.179909 TCTCTACTCCTATAAAAGACTCAGTTG 57.820 37.037 0.00 0.00 0.00 3.16
231 233 8.294954 TCTACTCCTATAAAAGACTCAGTTGG 57.705 38.462 0.00 0.00 0.00 3.77
232 234 6.936968 ACTCCTATAAAAGACTCAGTTGGT 57.063 37.500 0.00 0.00 0.00 3.67
233 235 6.702329 ACTCCTATAAAAGACTCAGTTGGTG 58.298 40.000 0.00 0.00 0.00 4.17
234 236 6.497259 ACTCCTATAAAAGACTCAGTTGGTGA 59.503 38.462 0.00 0.00 0.00 4.02
235 237 7.181125 ACTCCTATAAAAGACTCAGTTGGTGAT 59.819 37.037 0.00 0.00 33.51 3.06
236 238 7.331026 TCCTATAAAAGACTCAGTTGGTGATG 58.669 38.462 0.00 0.00 33.51 3.07
237 239 7.180229 TCCTATAAAAGACTCAGTTGGTGATGA 59.820 37.037 0.00 0.00 33.51 2.92
238 240 7.989741 CCTATAAAAGACTCAGTTGGTGATGAT 59.010 37.037 0.00 0.00 33.51 2.45
239 241 5.954296 AAAAGACTCAGTTGGTGATGATG 57.046 39.130 0.00 0.00 33.51 3.07
240 242 3.623906 AGACTCAGTTGGTGATGATGG 57.376 47.619 0.00 0.00 33.51 3.51
241 243 2.909006 AGACTCAGTTGGTGATGATGGT 59.091 45.455 0.00 0.00 33.51 3.55
242 244 3.005554 GACTCAGTTGGTGATGATGGTG 58.994 50.000 0.00 0.00 33.51 4.17
243 245 2.373169 ACTCAGTTGGTGATGATGGTGT 59.627 45.455 0.00 0.00 33.51 4.16
244 246 2.745821 CTCAGTTGGTGATGATGGTGTG 59.254 50.000 0.00 0.00 33.51 3.82
245 247 2.106338 TCAGTTGGTGATGATGGTGTGT 59.894 45.455 0.00 0.00 0.00 3.72
246 248 2.485426 CAGTTGGTGATGATGGTGTGTC 59.515 50.000 0.00 0.00 0.00 3.67
247 249 2.373169 AGTTGGTGATGATGGTGTGTCT 59.627 45.455 0.00 0.00 0.00 3.41
248 250 2.477845 TGGTGATGATGGTGTGTCTG 57.522 50.000 0.00 0.00 0.00 3.51
249 251 1.089920 GGTGATGATGGTGTGTCTGC 58.910 55.000 0.00 0.00 0.00 4.26
250 252 1.089920 GTGATGATGGTGTGTCTGCC 58.910 55.000 0.00 0.00 0.00 4.85
251 253 0.691904 TGATGATGGTGTGTCTGCCA 59.308 50.000 0.00 0.00 39.33 4.92
255 257 1.078214 ATGGTGTGTCTGCCATCCG 60.078 57.895 0.00 0.00 41.24 4.18
256 258 1.841302 ATGGTGTGTCTGCCATCCGT 61.841 55.000 0.00 0.00 41.24 4.69
257 259 1.741770 GGTGTGTCTGCCATCCGTC 60.742 63.158 0.00 0.00 0.00 4.79
258 260 1.005037 GTGTGTCTGCCATCCGTCA 60.005 57.895 0.00 0.00 0.00 4.35
259 261 0.391661 GTGTGTCTGCCATCCGTCAT 60.392 55.000 0.00 0.00 0.00 3.06
260 262 0.324614 TGTGTCTGCCATCCGTCATT 59.675 50.000 0.00 0.00 0.00 2.57
261 263 1.271325 TGTGTCTGCCATCCGTCATTT 60.271 47.619 0.00 0.00 0.00 2.32
262 264 1.398390 GTGTCTGCCATCCGTCATTTC 59.602 52.381 0.00 0.00 0.00 2.17
263 265 1.278985 TGTCTGCCATCCGTCATTTCT 59.721 47.619 0.00 0.00 0.00 2.52
264 266 1.667724 GTCTGCCATCCGTCATTTCTG 59.332 52.381 0.00 0.00 0.00 3.02
265 267 1.554617 TCTGCCATCCGTCATTTCTGA 59.445 47.619 0.00 0.00 0.00 3.27
266 268 1.667724 CTGCCATCCGTCATTTCTGAC 59.332 52.381 0.00 0.00 46.89 3.51
285 287 4.953667 TGACCATCAGATCTGCATCTAAC 58.046 43.478 18.36 6.54 37.25 2.34
286 288 3.986572 GACCATCAGATCTGCATCTAACG 59.013 47.826 18.36 1.99 37.25 3.18
287 289 3.638627 ACCATCAGATCTGCATCTAACGA 59.361 43.478 18.36 0.00 37.25 3.85
288 290 4.282957 ACCATCAGATCTGCATCTAACGAT 59.717 41.667 18.36 0.00 37.25 3.73
289 291 5.221601 ACCATCAGATCTGCATCTAACGATT 60.222 40.000 18.36 0.00 37.25 3.34
290 292 5.120363 CCATCAGATCTGCATCTAACGATTG 59.880 44.000 18.36 0.00 37.25 2.67
291 293 5.268118 TCAGATCTGCATCTAACGATTGT 57.732 39.130 18.36 0.00 37.25 2.71
292 294 5.045872 TCAGATCTGCATCTAACGATTGTG 58.954 41.667 18.36 0.00 37.25 3.33
293 295 5.045872 CAGATCTGCATCTAACGATTGTGA 58.954 41.667 10.38 0.00 37.25 3.58
294 296 5.695363 CAGATCTGCATCTAACGATTGTGAT 59.305 40.000 10.38 0.00 37.25 3.06
295 297 5.695363 AGATCTGCATCTAACGATTGTGATG 59.305 40.000 8.45 8.45 37.63 3.07
296 298 4.758688 TCTGCATCTAACGATTGTGATGT 58.241 39.130 12.64 0.00 38.68 3.06
297 299 5.901552 TCTGCATCTAACGATTGTGATGTA 58.098 37.500 12.64 8.76 38.68 2.29
298 300 6.337356 TCTGCATCTAACGATTGTGATGTAA 58.663 36.000 12.64 4.20 38.68 2.41
299 301 6.476706 TCTGCATCTAACGATTGTGATGTAAG 59.523 38.462 12.64 10.96 38.68 2.34
300 302 5.006649 TGCATCTAACGATTGTGATGTAAGC 59.993 40.000 12.64 2.54 38.68 3.09
301 303 5.235186 GCATCTAACGATTGTGATGTAAGCT 59.765 40.000 12.64 0.00 38.68 3.74
302 304 6.643845 CATCTAACGATTGTGATGTAAGCTG 58.356 40.000 5.58 0.00 33.65 4.24
303 305 5.720202 TCTAACGATTGTGATGTAAGCTGT 58.280 37.500 0.00 0.00 0.00 4.40
304 306 4.668576 AACGATTGTGATGTAAGCTGTG 57.331 40.909 0.00 0.00 0.00 3.66
305 307 3.002791 ACGATTGTGATGTAAGCTGTGG 58.997 45.455 0.00 0.00 0.00 4.17
306 308 2.223112 CGATTGTGATGTAAGCTGTGGC 60.223 50.000 0.00 0.00 39.06 5.01
307 309 2.268762 TTGTGATGTAAGCTGTGGCA 57.731 45.000 0.00 0.00 41.70 4.92
308 310 2.495155 TGTGATGTAAGCTGTGGCAT 57.505 45.000 0.00 0.00 41.70 4.40
309 311 2.794103 TGTGATGTAAGCTGTGGCATT 58.206 42.857 0.00 0.00 41.70 3.56
310 312 2.749076 TGTGATGTAAGCTGTGGCATTC 59.251 45.455 0.00 0.00 41.70 2.67
311 313 3.012518 GTGATGTAAGCTGTGGCATTCT 58.987 45.455 0.00 0.00 41.70 2.40
312 314 3.441572 GTGATGTAAGCTGTGGCATTCTT 59.558 43.478 0.00 0.00 41.70 2.52
313 315 3.441222 TGATGTAAGCTGTGGCATTCTTG 59.559 43.478 0.00 0.00 41.70 3.02
325 327 2.730550 CATTCTTGCAACAAGACCCC 57.269 50.000 9.46 0.00 0.00 4.95
326 328 1.273327 CATTCTTGCAACAAGACCCCC 59.727 52.381 9.46 0.00 0.00 5.40
327 329 0.260230 TTCTTGCAACAAGACCCCCA 59.740 50.000 9.46 0.00 0.00 4.96
328 330 0.178992 TCTTGCAACAAGACCCCCAG 60.179 55.000 5.94 0.00 0.00 4.45
329 331 0.468029 CTTGCAACAAGACCCCCAGT 60.468 55.000 0.00 0.00 0.00 4.00
330 332 0.032615 TTGCAACAAGACCCCCAGTT 60.033 50.000 0.00 0.00 0.00 3.16
331 333 0.467290 TGCAACAAGACCCCCAGTTC 60.467 55.000 0.00 0.00 0.00 3.01
332 334 0.178990 GCAACAAGACCCCCAGTTCT 60.179 55.000 0.00 0.00 0.00 3.01
333 335 1.754201 GCAACAAGACCCCCAGTTCTT 60.754 52.381 0.00 0.00 0.00 2.52
334 336 1.956477 CAACAAGACCCCCAGTTCTTG 59.044 52.381 9.29 9.29 43.52 3.02
335 337 0.178990 ACAAGACCCCCAGTTCTTGC 60.179 55.000 10.52 0.00 42.16 4.01
336 338 0.111253 CAAGACCCCCAGTTCTTGCT 59.889 55.000 0.00 0.00 34.15 3.91
337 339 0.402121 AAGACCCCCAGTTCTTGCTC 59.598 55.000 0.00 0.00 0.00 4.26
338 340 1.002011 GACCCCCAGTTCTTGCTCC 60.002 63.158 0.00 0.00 0.00 4.70
339 341 1.774217 ACCCCCAGTTCTTGCTCCA 60.774 57.895 0.00 0.00 0.00 3.86
340 342 1.360393 ACCCCCAGTTCTTGCTCCAA 61.360 55.000 0.00 0.00 0.00 3.53
341 343 0.040204 CCCCCAGTTCTTGCTCCAAT 59.960 55.000 0.00 0.00 0.00 3.16
342 344 1.550869 CCCCCAGTTCTTGCTCCAATT 60.551 52.381 0.00 0.00 0.00 2.32
343 345 2.250924 CCCCAGTTCTTGCTCCAATTT 58.749 47.619 0.00 0.00 0.00 1.82
344 346 2.028748 CCCCAGTTCTTGCTCCAATTTG 60.029 50.000 0.00 0.00 0.00 2.32
345 347 2.611224 CCCAGTTCTTGCTCCAATTTGC 60.611 50.000 0.00 0.00 0.00 3.68
346 348 2.322161 CAGTTCTTGCTCCAATTTGCG 58.678 47.619 0.00 0.00 0.00 4.85
347 349 1.270550 AGTTCTTGCTCCAATTTGCGG 59.729 47.619 0.00 0.00 0.00 5.69
348 350 1.269448 GTTCTTGCTCCAATTTGCGGA 59.731 47.619 0.00 0.00 0.00 5.54
349 351 1.614996 TCTTGCTCCAATTTGCGGAA 58.385 45.000 0.00 0.00 30.33 4.30
350 352 1.959985 TCTTGCTCCAATTTGCGGAAA 59.040 42.857 4.04 4.04 30.33 3.13
351 353 2.061028 CTTGCTCCAATTTGCGGAAAC 58.939 47.619 3.52 0.00 30.33 2.78
352 354 1.327303 TGCTCCAATTTGCGGAAACT 58.673 45.000 3.52 0.00 30.33 2.66
353 355 1.269448 TGCTCCAATTTGCGGAAACTC 59.731 47.619 3.52 0.00 30.33 3.01
354 356 1.402852 GCTCCAATTTGCGGAAACTCC 60.403 52.381 3.52 0.00 30.33 3.85
355 357 2.162681 CTCCAATTTGCGGAAACTCCT 58.837 47.619 3.52 0.00 33.30 3.69
356 358 2.558359 CTCCAATTTGCGGAAACTCCTT 59.442 45.455 3.52 0.00 33.30 3.36
357 359 3.756434 CTCCAATTTGCGGAAACTCCTTA 59.244 43.478 3.52 0.00 33.30 2.69
358 360 3.756434 TCCAATTTGCGGAAACTCCTTAG 59.244 43.478 3.52 0.00 33.30 2.18
359 361 3.506067 CCAATTTGCGGAAACTCCTTAGT 59.494 43.478 3.52 0.00 37.65 2.24
360 362 4.698304 CCAATTTGCGGAAACTCCTTAGTA 59.302 41.667 3.52 0.00 33.75 1.82
361 363 5.357032 CCAATTTGCGGAAACTCCTTAGTAT 59.643 40.000 3.52 0.00 33.75 2.12
362 364 6.458342 CCAATTTGCGGAAACTCCTTAGTATC 60.458 42.308 3.52 0.00 33.75 2.24
363 365 5.416271 TTTGCGGAAACTCCTTAGTATCT 57.584 39.130 0.00 0.00 33.75 1.98
364 366 5.416271 TTGCGGAAACTCCTTAGTATCTT 57.584 39.130 0.00 0.00 33.75 2.40
365 367 4.755411 TGCGGAAACTCCTTAGTATCTTG 58.245 43.478 0.00 0.00 33.75 3.02
366 368 4.464951 TGCGGAAACTCCTTAGTATCTTGA 59.535 41.667 0.00 0.00 33.75 3.02
367 369 5.046878 TGCGGAAACTCCTTAGTATCTTGAA 60.047 40.000 0.00 0.00 33.75 2.69
368 370 5.873164 GCGGAAACTCCTTAGTATCTTGAAA 59.127 40.000 0.00 0.00 33.75 2.69
369 371 6.183360 GCGGAAACTCCTTAGTATCTTGAAAC 60.183 42.308 0.00 0.00 33.75 2.78
370 372 6.313164 CGGAAACTCCTTAGTATCTTGAAACC 59.687 42.308 0.00 0.00 33.75 3.27
371 373 7.166167 GGAAACTCCTTAGTATCTTGAAACCA 58.834 38.462 0.00 0.00 33.75 3.67
372 374 7.664318 GGAAACTCCTTAGTATCTTGAAACCAA 59.336 37.037 0.00 0.00 33.75 3.67
373 375 7.981102 AACTCCTTAGTATCTTGAAACCAAC 57.019 36.000 0.00 0.00 33.75 3.77
374 376 6.473758 ACTCCTTAGTATCTTGAAACCAACC 58.526 40.000 0.00 0.00 32.84 3.77
375 377 6.043938 ACTCCTTAGTATCTTGAAACCAACCA 59.956 38.462 0.00 0.00 32.84 3.67
376 378 6.235664 TCCTTAGTATCTTGAAACCAACCAC 58.764 40.000 0.00 0.00 0.00 4.16
377 379 6.001460 CCTTAGTATCTTGAAACCAACCACA 58.999 40.000 0.00 0.00 0.00 4.17
378 380 6.659242 CCTTAGTATCTTGAAACCAACCACAT 59.341 38.462 0.00 0.00 0.00 3.21
379 381 7.148239 CCTTAGTATCTTGAAACCAACCACATC 60.148 40.741 0.00 0.00 0.00 3.06
380 382 5.010282 AGTATCTTGAAACCAACCACATCC 58.990 41.667 0.00 0.00 0.00 3.51
381 383 2.593026 TCTTGAAACCAACCACATCCC 58.407 47.619 0.00 0.00 0.00 3.85
382 384 2.176798 TCTTGAAACCAACCACATCCCT 59.823 45.455 0.00 0.00 0.00 4.20
383 385 2.286365 TGAAACCAACCACATCCCTC 57.714 50.000 0.00 0.00 0.00 4.30
384 386 1.203001 TGAAACCAACCACATCCCTCC 60.203 52.381 0.00 0.00 0.00 4.30
385 387 0.114364 AAACCAACCACATCCCTCCC 59.886 55.000 0.00 0.00 0.00 4.30
386 388 1.800229 AACCAACCACATCCCTCCCC 61.800 60.000 0.00 0.00 0.00 4.81
387 389 2.683475 CAACCACATCCCTCCCCC 59.317 66.667 0.00 0.00 0.00 5.40
388 390 2.212761 AACCACATCCCTCCCCCA 59.787 61.111 0.00 0.00 0.00 4.96
389 391 2.238701 AACCACATCCCTCCCCCAC 61.239 63.158 0.00 0.00 0.00 4.61
390 392 3.420482 CCACATCCCTCCCCCACC 61.420 72.222 0.00 0.00 0.00 4.61
391 393 2.286425 CACATCCCTCCCCCACCT 60.286 66.667 0.00 0.00 0.00 4.00
392 394 2.042930 ACATCCCTCCCCCACCTC 59.957 66.667 0.00 0.00 0.00 3.85
393 395 2.042762 CATCCCTCCCCCACCTCA 59.957 66.667 0.00 0.00 0.00 3.86
394 396 1.386485 CATCCCTCCCCCACCTCAT 60.386 63.158 0.00 0.00 0.00 2.90
395 397 1.386485 ATCCCTCCCCCACCTCATG 60.386 63.158 0.00 0.00 0.00 3.07
396 398 1.913321 ATCCCTCCCCCACCTCATGA 61.913 60.000 0.00 0.00 0.00 3.07
397 399 1.619363 CCCTCCCCCACCTCATGAA 60.619 63.158 0.00 0.00 0.00 2.57
398 400 1.214305 CCCTCCCCCACCTCATGAAA 61.214 60.000 0.00 0.00 0.00 2.69
399 401 0.704076 CCTCCCCCACCTCATGAAAA 59.296 55.000 0.00 0.00 0.00 2.29
400 402 1.616994 CCTCCCCCACCTCATGAAAAC 60.617 57.143 0.00 0.00 0.00 2.43
401 403 1.075374 CTCCCCCACCTCATGAAAACA 59.925 52.381 0.00 0.00 0.00 2.83
402 404 1.075374 TCCCCCACCTCATGAAAACAG 59.925 52.381 0.00 0.00 0.00 3.16
403 405 0.890683 CCCCACCTCATGAAAACAGC 59.109 55.000 0.00 0.00 0.00 4.40
404 406 0.890683 CCCACCTCATGAAAACAGCC 59.109 55.000 0.00 0.00 0.00 4.85
405 407 1.619654 CCACCTCATGAAAACAGCCA 58.380 50.000 0.00 0.00 0.00 4.75
406 408 1.270550 CCACCTCATGAAAACAGCCAC 59.729 52.381 0.00 0.00 0.00 5.01
407 409 1.069022 CACCTCATGAAAACAGCCACG 60.069 52.381 0.00 0.00 0.00 4.94
408 410 1.202758 ACCTCATGAAAACAGCCACGA 60.203 47.619 0.00 0.00 0.00 4.35
409 411 1.466167 CCTCATGAAAACAGCCACGAG 59.534 52.381 0.00 0.00 0.00 4.18
410 412 2.416747 CTCATGAAAACAGCCACGAGA 58.583 47.619 0.00 0.00 0.00 4.04
411 413 2.807967 CTCATGAAAACAGCCACGAGAA 59.192 45.455 0.00 0.00 0.00 2.87
412 414 3.210227 TCATGAAAACAGCCACGAGAAA 58.790 40.909 0.00 0.00 0.00 2.52
413 415 3.820467 TCATGAAAACAGCCACGAGAAAT 59.180 39.130 0.00 0.00 0.00 2.17
414 416 5.000591 TCATGAAAACAGCCACGAGAAATA 58.999 37.500 0.00 0.00 0.00 1.40
415 417 5.647658 TCATGAAAACAGCCACGAGAAATAT 59.352 36.000 0.00 0.00 0.00 1.28
416 418 6.821160 TCATGAAAACAGCCACGAGAAATATA 59.179 34.615 0.00 0.00 0.00 0.86
417 419 7.498900 TCATGAAAACAGCCACGAGAAATATAT 59.501 33.333 0.00 0.00 0.00 0.86
418 420 7.624360 TGAAAACAGCCACGAGAAATATATT 57.376 32.000 0.00 0.00 0.00 1.28
419 421 8.050778 TGAAAACAGCCACGAGAAATATATTT 57.949 30.769 10.51 10.51 0.00 1.40
420 422 8.519526 TGAAAACAGCCACGAGAAATATATTTT 58.480 29.630 11.92 2.96 0.00 1.82
421 423 8.687824 AAAACAGCCACGAGAAATATATTTTG 57.312 30.769 11.92 6.42 0.00 2.44
422 424 7.624360 AACAGCCACGAGAAATATATTTTGA 57.376 32.000 11.92 0.00 0.00 2.69
423 425 7.251704 ACAGCCACGAGAAATATATTTTGAG 57.748 36.000 11.92 8.62 0.00 3.02
424 426 6.823689 ACAGCCACGAGAAATATATTTTGAGT 59.176 34.615 11.92 9.17 0.00 3.41
425 427 7.128331 CAGCCACGAGAAATATATTTTGAGTG 58.872 38.462 21.28 21.28 32.55 3.51
426 428 7.011389 CAGCCACGAGAAATATATTTTGAGTGA 59.989 37.037 25.55 0.00 33.51 3.41
427 429 7.552687 AGCCACGAGAAATATATTTTGAGTGAA 59.447 33.333 25.55 0.00 33.51 3.18
428 430 8.181573 GCCACGAGAAATATATTTTGAGTGAAA 58.818 33.333 25.55 0.00 33.51 2.69
429 431 9.490663 CCACGAGAAATATATTTTGAGTGAAAC 57.509 33.333 25.55 9.51 33.51 2.78
430 432 9.490663 CACGAGAAATATATTTTGAGTGAAACC 57.509 33.333 22.53 6.58 37.80 3.27
431 433 9.226606 ACGAGAAATATATTTTGAGTGAAACCA 57.773 29.630 11.92 0.00 37.80 3.67
440 442 6.687081 TTTTGAGTGAAACCAAATACGAGT 57.313 33.333 0.00 0.00 37.04 4.18
441 443 7.789273 TTTTGAGTGAAACCAAATACGAGTA 57.211 32.000 0.00 0.00 37.04 2.59
442 444 7.972832 TTTGAGTGAAACCAAATACGAGTAT 57.027 32.000 0.00 0.00 37.80 2.12
443 445 9.491675 TTTTGAGTGAAACCAAATACGAGTATA 57.508 29.630 0.00 0.00 37.04 1.47
444 446 9.661563 TTTGAGTGAAACCAAATACGAGTATAT 57.338 29.630 0.00 0.00 37.80 0.86
445 447 9.661563 TTGAGTGAAACCAAATACGAGTATATT 57.338 29.630 0.00 0.00 37.80 1.28
446 448 9.661563 TGAGTGAAACCAAATACGAGTATATTT 57.338 29.630 0.00 0.00 37.80 1.40
521 523 9.692749 TGAACATGTATTATTCTACTTCGGATC 57.307 33.333 0.00 0.00 0.00 3.36
522 524 9.141400 GAACATGTATTATTCTACTTCGGATCC 57.859 37.037 0.00 0.00 0.00 3.36
523 525 7.313646 ACATGTATTATTCTACTTCGGATCCG 58.686 38.462 28.62 28.62 41.35 4.18
524 526 6.889301 TGTATTATTCTACTTCGGATCCGT 57.111 37.500 32.15 17.06 40.74 4.69
525 527 7.281040 TGTATTATTCTACTTCGGATCCGTT 57.719 36.000 32.15 20.00 40.74 4.44
526 528 7.143340 TGTATTATTCTACTTCGGATCCGTTG 58.857 38.462 32.15 25.85 40.74 4.10
527 529 2.288961 TTCTACTTCGGATCCGTTGC 57.711 50.000 32.15 0.00 40.74 4.17
528 530 1.179152 TCTACTTCGGATCCGTTGCA 58.821 50.000 32.15 16.10 40.74 4.08
529 531 1.546923 TCTACTTCGGATCCGTTGCAA 59.453 47.619 32.15 18.59 40.74 4.08
530 532 1.659098 CTACTTCGGATCCGTTGCAAC 59.341 52.381 32.15 19.89 40.74 4.17
539 541 3.931130 CGTTGCAACGCACGGACA 61.931 61.111 35.89 0.00 46.06 4.02
540 542 2.351888 GTTGCAACGCACGGACAC 60.352 61.111 14.90 0.00 38.71 3.67
541 543 2.820037 TTGCAACGCACGGACACA 60.820 55.556 0.00 0.00 38.71 3.72
542 544 2.183504 TTGCAACGCACGGACACAT 61.184 52.632 0.00 0.00 38.71 3.21
543 545 1.719725 TTGCAACGCACGGACACATT 61.720 50.000 0.00 0.00 38.71 2.71
544 546 1.725625 GCAACGCACGGACACATTG 60.726 57.895 0.00 0.00 0.00 2.82
545 547 1.725625 CAACGCACGGACACATTGC 60.726 57.895 0.00 0.00 0.00 3.56
546 548 1.891919 AACGCACGGACACATTGCT 60.892 52.632 0.00 0.00 33.90 3.91
547 549 0.601576 AACGCACGGACACATTGCTA 60.602 50.000 0.00 0.00 33.90 3.49
548 550 1.014044 ACGCACGGACACATTGCTAG 61.014 55.000 0.00 0.00 33.90 3.42
549 551 1.014044 CGCACGGACACATTGCTAGT 61.014 55.000 0.00 0.00 33.90 2.57
569 571 9.116067 TGCTAGTTGAGTAAAATACTTTGTTGT 57.884 29.630 0.00 0.00 39.59 3.32
577 579 5.351948 AAAATACTTTGTTGTTGGGTGCT 57.648 34.783 0.00 0.00 0.00 4.40
578 580 6.472686 AAAATACTTTGTTGTTGGGTGCTA 57.527 33.333 0.00 0.00 0.00 3.49
579 581 5.705609 AATACTTTGTTGTTGGGTGCTAG 57.294 39.130 0.00 0.00 0.00 3.42
586 674 4.131596 TGTTGTTGGGTGCTAGTAACTTC 58.868 43.478 0.00 0.00 0.00 3.01
610 699 2.224769 CCGGCATGGATATTTACCCAGT 60.225 50.000 0.00 0.00 42.00 4.00
628 717 1.141053 AGTTGGTTCGGGGATAGCATC 59.859 52.381 0.00 0.00 0.00 3.91
674 769 1.066929 GGTGCAATCCCATTGGTTGTC 60.067 52.381 1.20 0.00 40.57 3.18
681 776 3.235750 TCCCATTGGTTGTCACATGAA 57.764 42.857 0.00 0.00 0.00 2.57
701 796 3.825143 AATTTTACCATGCCATCCAGC 57.175 42.857 0.00 0.00 0.00 4.85
717 812 6.632909 CCATCCAGCAATTTTGAGTAATTCA 58.367 36.000 0.00 0.00 0.00 2.57
733 828 9.151471 TGAGTAATTCATTGAGTAAGTACTTGC 57.849 33.333 18.56 16.80 36.82 4.01
734 829 9.372369 GAGTAATTCATTGAGTAAGTACTTGCT 57.628 33.333 24.07 24.07 36.82 3.91
758 857 1.214062 GCTCTCTCTGTCACCGGTG 59.786 63.158 29.26 29.26 0.00 4.94
759 858 1.886585 CTCTCTCTGTCACCGGTGG 59.113 63.158 33.40 18.31 0.00 4.61
763 862 3.883744 CTCTGTCACCGGTGGCCAC 62.884 68.421 34.91 28.57 33.48 5.01
861 960 0.930742 CCTTATCGACGCGTCTGCTC 60.931 60.000 33.94 11.27 39.65 4.26
862 961 0.930742 CTTATCGACGCGTCTGCTCC 60.931 60.000 33.94 10.50 39.65 4.70
863 962 2.642249 TTATCGACGCGTCTGCTCCG 62.642 60.000 33.94 21.86 39.65 4.63
871 970 4.863925 GTCTGCTCCGCTCCGCTC 62.864 72.222 0.00 0.00 0.00 5.03
891 1000 1.274798 CGCACCGCACCAAAAATGAC 61.275 55.000 0.00 0.00 0.00 3.06
898 1007 1.082366 ACCAAAAATGACGCGCGAC 60.082 52.632 39.36 31.63 0.00 5.19
1210 1339 4.688419 TCGTCGTCGGTGTTCGCC 62.688 66.667 1.55 0.00 39.05 5.54
1445 1577 4.700365 CCGACGCAGCGTGAGTCA 62.700 66.667 28.57 0.00 45.56 3.41
1478 1620 0.098376 CCTCTCATCTTTGCTTGCGC 59.902 55.000 0.00 0.00 0.00 6.09
1576 1718 2.430146 CGTGATTCGCGTGCGTACA 61.430 57.895 14.47 9.85 40.74 2.90
1628 1775 3.719924 TCTCACGCGGTTTCTCTTTTAA 58.280 40.909 12.47 0.00 0.00 1.52
1664 1815 3.587951 TCCACACTCTCTACTCTACACCT 59.412 47.826 0.00 0.00 0.00 4.00
1736 1888 1.757574 GCCATTCGTATACGCGTACA 58.242 50.000 23.19 7.29 39.60 2.90
1741 1893 3.403613 TTCGTATACGCGTACACATGT 57.596 42.857 25.62 10.48 39.60 3.21
1742 1894 4.528531 TTCGTATACGCGTACACATGTA 57.471 40.909 25.62 9.47 39.60 2.29
1743 1895 4.730600 TCGTATACGCGTACACATGTAT 57.269 40.909 25.62 10.04 39.60 2.29
1744 1896 5.094429 TCGTATACGCGTACACATGTATT 57.906 39.130 25.62 8.34 39.60 1.89
1745 1897 6.221858 TCGTATACGCGTACACATGTATTA 57.778 37.500 25.62 7.35 39.60 0.98
1746 1898 6.070829 TCGTATACGCGTACACATGTATTAC 58.929 40.000 25.62 16.90 39.60 1.89
1753 1905 6.857964 ACGCGTACACATGTATTACTATTACC 59.142 38.462 11.67 0.00 32.54 2.85
1773 1925 0.429736 GCGCGTGCGTACTATACATG 59.570 55.000 16.27 0.00 42.09 3.21
1774 1926 0.429736 CGCGTGCGTACTATACATGC 59.570 55.000 6.00 8.39 41.77 4.06
1775 1927 0.429736 GCGTGCGTACTATACATGCG 59.570 55.000 1.24 0.00 36.67 4.73
1776 1928 0.429736 CGTGCGTACTATACATGCGC 59.570 55.000 0.00 0.00 47.00 6.09
1779 1931 1.767289 GCGTACTATACATGCGCACT 58.233 50.000 14.90 2.74 46.23 4.40
1780 1932 2.924903 GCGTACTATACATGCGCACTA 58.075 47.619 14.90 5.51 46.23 2.74
1781 1933 3.499048 GCGTACTATACATGCGCACTAT 58.501 45.455 14.90 13.46 46.23 2.12
1782 1934 4.655027 GCGTACTATACATGCGCACTATA 58.345 43.478 14.90 13.90 46.23 1.31
1783 1935 4.494764 GCGTACTATACATGCGCACTATAC 59.505 45.833 14.90 7.91 46.23 1.47
1784 1936 5.624292 CGTACTATACATGCGCACTATACA 58.376 41.667 14.90 1.27 0.00 2.29
1785 1937 6.255950 CGTACTATACATGCGCACTATACAT 58.744 40.000 14.90 6.70 0.00 2.29
1884 2036 1.772182 CTAGCGAGCAATTCCGGTAG 58.228 55.000 0.00 12.89 45.84 3.18
1910 2062 2.934886 ACGGAGGGAGTACTAGCTAG 57.065 55.000 19.44 19.44 0.00 3.42
1912 2064 1.072648 CGGAGGGAGTACTAGCTAGCT 59.927 57.143 23.12 23.12 0.00 3.32
1914 2066 3.244491 CGGAGGGAGTACTAGCTAGCTAA 60.244 52.174 24.20 8.93 0.00 3.09
1918 2070 4.106663 AGGGAGTACTAGCTAGCTAACCAT 59.893 45.833 24.20 16.18 0.00 3.55
1919 2071 4.460034 GGGAGTACTAGCTAGCTAACCATC 59.540 50.000 24.20 18.29 0.00 3.51
2233 2543 4.571372 TTTGGTTTCTTATTTCGGCGTT 57.429 36.364 6.85 0.00 0.00 4.84
2481 2809 3.139025 ACCCATGTAGCAGCTATGGAATT 59.861 43.478 21.70 6.48 43.15 2.17
2482 2810 3.755378 CCCATGTAGCAGCTATGGAATTC 59.245 47.826 21.70 0.00 43.15 2.17
2483 2811 4.506271 CCCATGTAGCAGCTATGGAATTCT 60.506 45.833 21.70 0.00 43.15 2.40
2484 2812 5.068636 CCATGTAGCAGCTATGGAATTCTT 58.931 41.667 16.71 0.00 43.15 2.52
2485 2813 5.533903 CCATGTAGCAGCTATGGAATTCTTT 59.466 40.000 16.71 0.00 43.15 2.52
2524 2852 3.388350 AGCTTTACCCCATGTAGCTCTAC 59.612 47.826 0.00 0.27 34.48 2.59
2575 2904 6.201226 TGTAGCTACAGAATCTGAAGAGTG 57.799 41.667 22.67 1.61 35.18 3.51
2581 2910 6.040391 GCTACAGAATCTGAAGAGTGGATACT 59.960 42.308 18.20 0.00 36.09 2.12
2582 2911 6.865834 ACAGAATCTGAAGAGTGGATACTT 57.134 37.500 18.20 0.00 34.62 2.24
2584 2913 6.438741 ACAGAATCTGAAGAGTGGATACTTGA 59.561 38.462 18.20 0.00 34.62 3.02
2587 2916 7.564660 AGAATCTGAAGAGTGGATACTTGAGAT 59.435 37.037 0.00 0.00 44.33 2.75
2588 2917 8.774546 AATCTGAAGAGTGGATACTTGAGATA 57.225 34.615 0.00 0.00 42.71 1.98
2642 2971 6.711277 TCTAGGCATTTCAACAAGTGACTAT 58.289 36.000 0.00 0.00 38.73 2.12
2742 3071 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
2750 3079 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2751 3080 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
2752 3081 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
2753 3082 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
2754 3083 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
2755 3084 3.744940 TTAGGAACGGAGGGAGTAGAA 57.255 47.619 0.00 0.00 0.00 2.10
2756 3085 2.617840 AGGAACGGAGGGAGTAGAAA 57.382 50.000 0.00 0.00 0.00 2.52
2757 3086 2.458620 AGGAACGGAGGGAGTAGAAAG 58.541 52.381 0.00 0.00 0.00 2.62
2758 3087 1.134759 GGAACGGAGGGAGTAGAAAGC 60.135 57.143 0.00 0.00 0.00 3.51
2759 3088 1.549170 GAACGGAGGGAGTAGAAAGCA 59.451 52.381 0.00 0.00 0.00 3.91
2760 3089 1.867363 ACGGAGGGAGTAGAAAGCAT 58.133 50.000 0.00 0.00 0.00 3.79
2761 3090 1.482593 ACGGAGGGAGTAGAAAGCATG 59.517 52.381 0.00 0.00 0.00 4.06
2762 3091 1.808133 CGGAGGGAGTAGAAAGCATGC 60.808 57.143 10.51 10.51 0.00 4.06
2763 3092 1.210478 GGAGGGAGTAGAAAGCATGCA 59.790 52.381 21.98 0.00 0.00 3.96
2764 3093 2.356125 GGAGGGAGTAGAAAGCATGCAA 60.356 50.000 21.98 0.00 0.00 4.08
2765 3094 3.549794 GAGGGAGTAGAAAGCATGCAAT 58.450 45.455 21.98 7.83 0.00 3.56
2766 3095 3.549794 AGGGAGTAGAAAGCATGCAATC 58.450 45.455 21.98 16.94 0.00 2.67
2767 3096 3.054139 AGGGAGTAGAAAGCATGCAATCA 60.054 43.478 21.98 5.74 0.00 2.57
2768 3097 3.887716 GGGAGTAGAAAGCATGCAATCAT 59.112 43.478 21.98 7.54 0.00 2.45
2769 3098 4.340381 GGGAGTAGAAAGCATGCAATCATT 59.660 41.667 21.98 6.44 0.00 2.57
2770 3099 5.163478 GGGAGTAGAAAGCATGCAATCATTT 60.163 40.000 21.98 11.11 0.00 2.32
2771 3100 6.335777 GGAGTAGAAAGCATGCAATCATTTT 58.664 36.000 21.98 10.32 0.00 1.82
2772 3101 6.474751 GGAGTAGAAAGCATGCAATCATTTTC 59.525 38.462 21.98 18.40 33.08 2.29
2773 3102 6.927416 AGTAGAAAGCATGCAATCATTTTCA 58.073 32.000 21.98 7.88 34.33 2.69
2774 3103 7.553334 AGTAGAAAGCATGCAATCATTTTCAT 58.447 30.769 21.98 11.32 34.33 2.57
2775 3104 6.903883 AGAAAGCATGCAATCATTTTCATC 57.096 33.333 21.98 0.00 34.33 2.92
2776 3105 6.640518 AGAAAGCATGCAATCATTTTCATCT 58.359 32.000 21.98 1.84 34.33 2.90
2779 3108 5.730550 AGCATGCAATCATTTTCATCTTGT 58.269 33.333 21.98 0.00 0.00 3.16
2855 3184 7.383300 GGTGGTTCATTTTCATCTTTTCTCTTG 59.617 37.037 0.00 0.00 0.00 3.02
2860 3189 4.469469 TTTCATCTTTTCTCTTGGGGGT 57.531 40.909 0.00 0.00 0.00 4.95
2861 3190 5.592587 TTTCATCTTTTCTCTTGGGGGTA 57.407 39.130 0.00 0.00 0.00 3.69
2882 3211 6.350696 GGGTATATATGCATACGTTCTCACCA 60.351 42.308 8.99 0.00 33.04 4.17
2939 3268 2.109431 CACCAACAGCAAGTGCACT 58.891 52.632 15.25 15.25 45.16 4.40
3182 3511 2.508663 GTCGTTAGCTCCGTGCCC 60.509 66.667 0.00 0.00 44.23 5.36
3203 3532 0.520404 CGTCTTTGCAGCAGCTCAAT 59.480 50.000 1.76 0.00 42.74 2.57
3246 3575 1.134965 CGACTAGCTATAGCCCCATGC 60.135 57.143 21.17 5.60 43.38 4.06
3848 4209 5.937975 AACCAAATATTCCCATCCAACAG 57.062 39.130 0.00 0.00 0.00 3.16
3880 4242 3.425758 GCAATAGGGCTTTGTTACGTGTC 60.426 47.826 0.00 0.00 0.00 3.67
3884 4246 2.147958 GGGCTTTGTTACGTGTCATGA 58.852 47.619 0.00 0.00 0.00 3.07
4149 4523 6.918892 TGTGAATTAATCGATTGGACGAAT 57.081 33.333 20.87 8.91 45.16 3.34
4327 4865 8.596380 CCTTTTTATAGATCTGTTTGTCGACTC 58.404 37.037 17.92 3.78 0.00 3.36
4328 4866 9.360093 CTTTTTATAGATCTGTTTGTCGACTCT 57.640 33.333 17.92 11.43 0.00 3.24
4329 4867 8.912787 TTTTATAGATCTGTTTGTCGACTCTC 57.087 34.615 17.92 7.25 0.00 3.20
4330 4868 7.867305 TTATAGATCTGTTTGTCGACTCTCT 57.133 36.000 17.92 9.91 0.00 3.10
4331 4869 4.695217 AGATCTGTTTGTCGACTCTCTC 57.305 45.455 17.92 4.75 0.00 3.20
4332 4870 4.331968 AGATCTGTTTGTCGACTCTCTCT 58.668 43.478 17.92 6.87 0.00 3.10
4333 4871 4.394920 AGATCTGTTTGTCGACTCTCTCTC 59.605 45.833 17.92 5.84 0.00 3.20
4334 4872 3.745799 TCTGTTTGTCGACTCTCTCTCT 58.254 45.455 17.92 0.00 0.00 3.10
4335 4873 3.749088 TCTGTTTGTCGACTCTCTCTCTC 59.251 47.826 17.92 0.00 0.00 3.20
4336 4874 3.745799 TGTTTGTCGACTCTCTCTCTCT 58.254 45.455 17.92 0.00 0.00 3.10
4337 4875 3.749088 TGTTTGTCGACTCTCTCTCTCTC 59.251 47.826 17.92 0.00 0.00 3.20
4338 4876 3.973206 TTGTCGACTCTCTCTCTCTCT 57.027 47.619 17.92 0.00 0.00 3.10
4339 4877 3.520290 TGTCGACTCTCTCTCTCTCTC 57.480 52.381 17.92 0.00 0.00 3.20
4340 4878 3.096852 TGTCGACTCTCTCTCTCTCTCT 58.903 50.000 17.92 0.00 0.00 3.10
4341 4879 3.130516 TGTCGACTCTCTCTCTCTCTCTC 59.869 52.174 17.92 0.00 0.00 3.20
4342 4880 3.381908 GTCGACTCTCTCTCTCTCTCTCT 59.618 52.174 8.70 0.00 0.00 3.10
4343 4881 3.632604 TCGACTCTCTCTCTCTCTCTCTC 59.367 52.174 0.00 0.00 0.00 3.20
4344 4882 3.634448 CGACTCTCTCTCTCTCTCTCTCT 59.366 52.174 0.00 0.00 0.00 3.10
4345 4883 4.261405 CGACTCTCTCTCTCTCTCTCTCTC 60.261 54.167 0.00 0.00 0.00 3.20
4346 4884 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
4347 4885 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
4348 4886 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
4438 5013 5.903923 ACTCTGATTTCATTTTTACCCCCT 58.096 37.500 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.283768 TCAATGCTTTCTAAGTTTGATCAAGTA 57.716 29.630 8.41 2.32 32.02 2.24
15 16 8.078596 GTCAATGCTTTCTAAGTTTGATCAAGT 58.921 33.333 8.41 1.20 36.17 3.16
16 17 8.295288 AGTCAATGCTTTCTAAGTTTGATCAAG 58.705 33.333 8.41 0.00 36.17 3.02
47 48 6.822667 ATAGATGGCGCATAAATTCAATCA 57.177 33.333 10.83 0.00 0.00 2.57
60 61 0.389948 CCGTCCCTAATAGATGGCGC 60.390 60.000 0.00 0.00 33.76 6.53
72 73 2.849318 AGTTACTACTACCTCCGTCCCT 59.151 50.000 0.00 0.00 31.21 4.20
73 74 3.289407 AGTTACTACTACCTCCGTCCC 57.711 52.381 0.00 0.00 31.21 4.46
76 77 5.179452 TGGTTAGTTACTACTACCTCCGT 57.821 43.478 12.73 0.00 36.61 4.69
77 78 7.807977 TTATGGTTAGTTACTACTACCTCCG 57.192 40.000 12.73 0.00 36.61 4.63
118 120 3.020102 GCACTTTGATGCGCGAAAT 57.980 47.368 12.10 1.20 35.50 2.17
137 139 4.654915 TGCGATGGAATCATGATATTGGT 58.345 39.130 9.04 0.00 45.97 3.67
158 160 3.443045 GTCGCCATTGCCCACCTG 61.443 66.667 0.00 0.00 0.00 4.00
172 174 3.694746 TGGCCTCTACCAGTGTCG 58.305 61.111 3.32 0.00 33.75 4.35
178 180 1.668826 AATGTTCCTGGCCTCTACCA 58.331 50.000 3.32 0.00 38.29 3.25
179 181 2.808906 AAATGTTCCTGGCCTCTACC 57.191 50.000 3.32 0.00 0.00 3.18
180 182 3.686016 TGAAAATGTTCCTGGCCTCTAC 58.314 45.455 3.32 0.00 32.28 2.59
181 183 4.591321 ATGAAAATGTTCCTGGCCTCTA 57.409 40.909 3.32 0.00 32.28 2.43
182 184 2.978156 TGAAAATGTTCCTGGCCTCT 57.022 45.000 3.32 0.00 32.28 3.69
183 185 5.136105 AGATATGAAAATGTTCCTGGCCTC 58.864 41.667 3.32 0.00 32.28 4.70
184 186 5.103771 AGAGATATGAAAATGTTCCTGGCCT 60.104 40.000 3.32 0.00 32.28 5.19
186 188 6.995091 AGTAGAGATATGAAAATGTTCCTGGC 59.005 38.462 0.00 0.00 32.28 4.85
187 189 7.659390 GGAGTAGAGATATGAAAATGTTCCTGG 59.341 40.741 0.00 0.00 32.28 4.45
188 190 8.428063 AGGAGTAGAGATATGAAAATGTTCCTG 58.572 37.037 0.00 0.00 32.28 3.86
189 191 8.560124 AGGAGTAGAGATATGAAAATGTTCCT 57.440 34.615 0.00 0.00 32.28 3.36
205 207 8.410141 CCAACTGAGTCTTTTATAGGAGTAGAG 58.590 40.741 0.00 0.00 0.00 2.43
206 208 7.894364 ACCAACTGAGTCTTTTATAGGAGTAGA 59.106 37.037 0.00 0.00 0.00 2.59
207 209 7.976734 CACCAACTGAGTCTTTTATAGGAGTAG 59.023 40.741 0.00 0.00 0.00 2.57
208 210 7.672660 TCACCAACTGAGTCTTTTATAGGAGTA 59.327 37.037 0.00 0.00 0.00 2.59
209 211 6.497259 TCACCAACTGAGTCTTTTATAGGAGT 59.503 38.462 0.00 0.00 0.00 3.85
210 212 6.936279 TCACCAACTGAGTCTTTTATAGGAG 58.064 40.000 0.00 0.00 0.00 3.69
211 213 6.928348 TCACCAACTGAGTCTTTTATAGGA 57.072 37.500 0.00 0.00 0.00 2.94
212 214 7.331026 TCATCACCAACTGAGTCTTTTATAGG 58.669 38.462 0.00 0.00 30.20 2.57
213 215 8.824781 CATCATCACCAACTGAGTCTTTTATAG 58.175 37.037 0.00 0.00 30.20 1.31
214 216 7.770433 CCATCATCACCAACTGAGTCTTTTATA 59.230 37.037 0.00 0.00 30.20 0.98
215 217 6.600822 CCATCATCACCAACTGAGTCTTTTAT 59.399 38.462 0.00 0.00 30.20 1.40
216 218 5.939883 CCATCATCACCAACTGAGTCTTTTA 59.060 40.000 0.00 0.00 30.20 1.52
217 219 4.763793 CCATCATCACCAACTGAGTCTTTT 59.236 41.667 0.00 0.00 30.20 2.27
218 220 4.202503 ACCATCATCACCAACTGAGTCTTT 60.203 41.667 0.00 0.00 30.20 2.52
219 221 3.328931 ACCATCATCACCAACTGAGTCTT 59.671 43.478 0.00 0.00 30.20 3.01
220 222 2.909006 ACCATCATCACCAACTGAGTCT 59.091 45.455 0.00 0.00 30.20 3.24
221 223 3.005554 CACCATCATCACCAACTGAGTC 58.994 50.000 0.00 0.00 30.20 3.36
222 224 2.373169 ACACCATCATCACCAACTGAGT 59.627 45.455 0.00 0.00 30.20 3.41
223 225 2.745821 CACACCATCATCACCAACTGAG 59.254 50.000 0.00 0.00 30.20 3.35
224 226 2.106338 ACACACCATCATCACCAACTGA 59.894 45.455 0.00 0.00 0.00 3.41
225 227 2.485426 GACACACCATCATCACCAACTG 59.515 50.000 0.00 0.00 0.00 3.16
226 228 2.373169 AGACACACCATCATCACCAACT 59.627 45.455 0.00 0.00 0.00 3.16
227 229 2.485426 CAGACACACCATCATCACCAAC 59.515 50.000 0.00 0.00 0.00 3.77
228 230 2.781923 CAGACACACCATCATCACCAA 58.218 47.619 0.00 0.00 0.00 3.67
229 231 1.611410 GCAGACACACCATCATCACCA 60.611 52.381 0.00 0.00 0.00 4.17
230 232 1.089920 GCAGACACACCATCATCACC 58.910 55.000 0.00 0.00 0.00 4.02
231 233 1.089920 GGCAGACACACCATCATCAC 58.910 55.000 0.00 0.00 0.00 3.06
232 234 0.691904 TGGCAGACACACCATCATCA 59.308 50.000 0.00 0.00 0.00 3.07
233 235 2.048444 ATGGCAGACACACCATCATC 57.952 50.000 0.00 0.00 43.26 2.92
238 240 2.347114 CGGATGGCAGACACACCA 59.653 61.111 0.00 0.00 41.06 4.17
239 241 1.741770 GACGGATGGCAGACACACC 60.742 63.158 0.00 0.00 0.00 4.16
240 242 0.391661 ATGACGGATGGCAGACACAC 60.392 55.000 0.00 0.00 0.00 3.82
241 243 0.324614 AATGACGGATGGCAGACACA 59.675 50.000 0.00 0.00 0.00 3.72
242 244 1.398390 GAAATGACGGATGGCAGACAC 59.602 52.381 0.00 0.00 0.00 3.67
243 245 1.278985 AGAAATGACGGATGGCAGACA 59.721 47.619 0.00 0.00 0.00 3.41
244 246 1.667724 CAGAAATGACGGATGGCAGAC 59.332 52.381 0.00 0.00 0.00 3.51
245 247 1.554617 TCAGAAATGACGGATGGCAGA 59.445 47.619 0.00 0.00 0.00 4.26
246 248 1.667724 GTCAGAAATGACGGATGGCAG 59.332 52.381 0.00 0.00 0.00 4.85
247 249 1.678728 GGTCAGAAATGACGGATGGCA 60.679 52.381 0.00 0.00 39.57 4.92
248 250 1.017387 GGTCAGAAATGACGGATGGC 58.983 55.000 2.56 0.00 39.57 4.40
249 251 2.401583 TGGTCAGAAATGACGGATGG 57.598 50.000 2.56 0.00 39.57 3.51
250 252 3.534554 TGATGGTCAGAAATGACGGATG 58.465 45.455 2.56 0.00 39.57 3.51
251 253 3.912496 TGATGGTCAGAAATGACGGAT 57.088 42.857 2.56 0.00 39.57 4.18
262 264 3.755112 AGATGCAGATCTGATGGTCAG 57.245 47.619 27.04 0.55 45.59 3.51
263 265 4.500375 CGTTAGATGCAGATCTGATGGTCA 60.500 45.833 27.04 14.16 39.44 4.02
264 266 3.986572 CGTTAGATGCAGATCTGATGGTC 59.013 47.826 27.04 15.93 39.44 4.02
265 267 3.638627 TCGTTAGATGCAGATCTGATGGT 59.361 43.478 27.04 9.80 39.44 3.55
266 268 4.248691 TCGTTAGATGCAGATCTGATGG 57.751 45.455 27.04 0.00 39.44 3.51
267 269 5.695363 ACAATCGTTAGATGCAGATCTGATG 59.305 40.000 27.04 9.59 39.44 3.07
268 270 5.695363 CACAATCGTTAGATGCAGATCTGAT 59.305 40.000 27.04 15.87 39.44 2.90
269 271 5.045872 CACAATCGTTAGATGCAGATCTGA 58.954 41.667 27.04 11.74 39.44 3.27
270 272 5.045872 TCACAATCGTTAGATGCAGATCTG 58.954 41.667 18.84 18.84 39.44 2.90
271 273 5.268118 TCACAATCGTTAGATGCAGATCT 57.732 39.130 0.00 0.00 42.03 2.75
272 274 5.464722 ACATCACAATCGTTAGATGCAGATC 59.535 40.000 0.00 0.00 41.08 2.75
273 275 5.363101 ACATCACAATCGTTAGATGCAGAT 58.637 37.500 0.00 0.00 41.08 2.90
274 276 4.758688 ACATCACAATCGTTAGATGCAGA 58.241 39.130 0.00 0.00 41.08 4.26
275 277 6.588348 TTACATCACAATCGTTAGATGCAG 57.412 37.500 0.00 0.00 41.08 4.41
276 278 5.006649 GCTTACATCACAATCGTTAGATGCA 59.993 40.000 0.00 0.00 41.08 3.96
277 279 5.235186 AGCTTACATCACAATCGTTAGATGC 59.765 40.000 0.00 0.00 41.08 3.91
278 280 6.256539 ACAGCTTACATCACAATCGTTAGATG 59.743 38.462 0.00 0.00 42.61 2.90
279 281 6.256539 CACAGCTTACATCACAATCGTTAGAT 59.743 38.462 0.00 0.00 39.12 1.98
280 282 5.576774 CACAGCTTACATCACAATCGTTAGA 59.423 40.000 0.00 0.00 0.00 2.10
281 283 5.220472 CCACAGCTTACATCACAATCGTTAG 60.220 44.000 0.00 0.00 0.00 2.34
282 284 4.629634 CCACAGCTTACATCACAATCGTTA 59.370 41.667 0.00 0.00 0.00 3.18
283 285 3.436704 CCACAGCTTACATCACAATCGTT 59.563 43.478 0.00 0.00 0.00 3.85
284 286 3.002791 CCACAGCTTACATCACAATCGT 58.997 45.455 0.00 0.00 0.00 3.73
285 287 2.223112 GCCACAGCTTACATCACAATCG 60.223 50.000 0.00 0.00 35.50 3.34
286 288 2.749076 TGCCACAGCTTACATCACAATC 59.251 45.455 0.00 0.00 40.80 2.67
287 289 2.794103 TGCCACAGCTTACATCACAAT 58.206 42.857 0.00 0.00 40.80 2.71
288 290 2.268762 TGCCACAGCTTACATCACAA 57.731 45.000 0.00 0.00 40.80 3.33
289 291 2.495155 ATGCCACAGCTTACATCACA 57.505 45.000 0.00 0.00 40.80 3.58
290 292 3.012518 AGAATGCCACAGCTTACATCAC 58.987 45.455 0.00 0.00 40.80 3.06
291 293 3.354948 AGAATGCCACAGCTTACATCA 57.645 42.857 0.00 0.00 40.80 3.07
292 294 4.025015 CAAGAATGCCACAGCTTACATC 57.975 45.455 0.00 0.00 40.80 3.06
306 308 1.273327 GGGGGTCTTGTTGCAAGAATG 59.727 52.381 9.73 4.68 0.00 2.67
307 309 1.133199 TGGGGGTCTTGTTGCAAGAAT 60.133 47.619 9.73 0.00 0.00 2.40
308 310 0.260230 TGGGGGTCTTGTTGCAAGAA 59.740 50.000 8.90 8.90 0.00 2.52
309 311 0.178992 CTGGGGGTCTTGTTGCAAGA 60.179 55.000 0.00 7.41 0.00 3.02
310 312 0.468029 ACTGGGGGTCTTGTTGCAAG 60.468 55.000 0.00 2.71 0.00 4.01
311 313 0.032615 AACTGGGGGTCTTGTTGCAA 60.033 50.000 0.00 0.00 0.00 4.08
312 314 0.467290 GAACTGGGGGTCTTGTTGCA 60.467 55.000 0.00 0.00 0.00 4.08
313 315 0.178990 AGAACTGGGGGTCTTGTTGC 60.179 55.000 0.00 0.00 0.00 4.17
314 316 1.956477 CAAGAACTGGGGGTCTTGTTG 59.044 52.381 13.65 0.00 35.98 3.33
315 317 1.754201 GCAAGAACTGGGGGTCTTGTT 60.754 52.381 20.21 0.00 40.96 2.83
316 318 0.178990 GCAAGAACTGGGGGTCTTGT 60.179 55.000 20.21 0.00 40.96 3.16
317 319 0.111253 AGCAAGAACTGGGGGTCTTG 59.889 55.000 16.55 16.55 41.58 3.02
318 320 0.402121 GAGCAAGAACTGGGGGTCTT 59.598 55.000 0.00 0.00 0.00 3.01
319 321 1.492993 GGAGCAAGAACTGGGGGTCT 61.493 60.000 0.00 0.00 0.00 3.85
320 322 1.002011 GGAGCAAGAACTGGGGGTC 60.002 63.158 0.00 0.00 0.00 4.46
321 323 1.360393 TTGGAGCAAGAACTGGGGGT 61.360 55.000 0.00 0.00 0.00 4.95
322 324 0.040204 ATTGGAGCAAGAACTGGGGG 59.960 55.000 0.00 0.00 0.00 5.40
323 325 1.928868 AATTGGAGCAAGAACTGGGG 58.071 50.000 0.00 0.00 0.00 4.96
324 326 2.611224 GCAAATTGGAGCAAGAACTGGG 60.611 50.000 0.00 0.00 0.00 4.45
325 327 2.680577 GCAAATTGGAGCAAGAACTGG 58.319 47.619 0.00 0.00 0.00 4.00
326 328 2.322161 CGCAAATTGGAGCAAGAACTG 58.678 47.619 0.00 0.00 0.00 3.16
327 329 1.270550 CCGCAAATTGGAGCAAGAACT 59.729 47.619 0.00 0.00 0.00 3.01
328 330 1.269448 TCCGCAAATTGGAGCAAGAAC 59.731 47.619 0.00 0.00 0.00 3.01
329 331 1.614996 TCCGCAAATTGGAGCAAGAA 58.385 45.000 0.00 0.00 0.00 2.52
330 332 1.614996 TTCCGCAAATTGGAGCAAGA 58.385 45.000 0.00 0.00 36.72 3.02
331 333 2.061028 GTTTCCGCAAATTGGAGCAAG 58.939 47.619 0.00 0.00 36.72 4.01
332 334 1.686052 AGTTTCCGCAAATTGGAGCAA 59.314 42.857 0.00 0.00 36.72 3.91
333 335 1.269448 GAGTTTCCGCAAATTGGAGCA 59.731 47.619 0.00 0.00 36.72 4.26
334 336 1.402852 GGAGTTTCCGCAAATTGGAGC 60.403 52.381 0.00 0.00 36.72 4.70
335 337 2.162681 AGGAGTTTCCGCAAATTGGAG 58.837 47.619 0.00 0.00 42.75 3.86
336 338 2.286365 AGGAGTTTCCGCAAATTGGA 57.714 45.000 0.00 0.00 42.75 3.53
337 339 3.506067 ACTAAGGAGTTTCCGCAAATTGG 59.494 43.478 0.00 0.00 42.75 3.16
338 340 4.766404 ACTAAGGAGTTTCCGCAAATTG 57.234 40.909 0.00 0.00 42.75 2.32
339 341 6.415573 AGATACTAAGGAGTTTCCGCAAATT 58.584 36.000 0.00 0.00 42.75 1.82
340 342 5.990668 AGATACTAAGGAGTTTCCGCAAAT 58.009 37.500 0.00 0.00 42.75 2.32
341 343 5.416271 AGATACTAAGGAGTTTCCGCAAA 57.584 39.130 0.00 0.00 42.75 3.68
342 344 5.046878 TCAAGATACTAAGGAGTTTCCGCAA 60.047 40.000 0.00 0.00 42.75 4.85
343 345 4.464951 TCAAGATACTAAGGAGTTTCCGCA 59.535 41.667 0.00 0.00 42.75 5.69
344 346 5.007385 TCAAGATACTAAGGAGTTTCCGC 57.993 43.478 0.00 0.00 42.75 5.54
345 347 6.313164 GGTTTCAAGATACTAAGGAGTTTCCG 59.687 42.308 0.00 0.00 42.75 4.30
346 348 7.166167 TGGTTTCAAGATACTAAGGAGTTTCC 58.834 38.462 0.00 0.00 35.01 3.13
347 349 8.504815 GTTGGTTTCAAGATACTAAGGAGTTTC 58.495 37.037 0.00 0.00 33.65 2.78
348 350 7.447545 GGTTGGTTTCAAGATACTAAGGAGTTT 59.552 37.037 0.00 0.00 33.65 2.66
349 351 6.940867 GGTTGGTTTCAAGATACTAAGGAGTT 59.059 38.462 0.00 0.00 33.65 3.01
350 352 6.043938 TGGTTGGTTTCAAGATACTAAGGAGT 59.956 38.462 0.00 0.00 35.09 3.85
351 353 6.371825 GTGGTTGGTTTCAAGATACTAAGGAG 59.628 42.308 0.00 0.00 32.92 3.69
352 354 6.183361 TGTGGTTGGTTTCAAGATACTAAGGA 60.183 38.462 0.00 0.00 32.92 3.36
353 355 6.001460 TGTGGTTGGTTTCAAGATACTAAGG 58.999 40.000 0.00 0.00 32.92 2.69
354 356 7.148239 GGATGTGGTTGGTTTCAAGATACTAAG 60.148 40.741 0.00 0.00 32.92 2.18
355 357 6.657541 GGATGTGGTTGGTTTCAAGATACTAA 59.342 38.462 0.00 0.00 32.92 2.24
356 358 6.177610 GGATGTGGTTGGTTTCAAGATACTA 58.822 40.000 0.00 0.00 32.92 1.82
357 359 5.010282 GGATGTGGTTGGTTTCAAGATACT 58.990 41.667 0.00 0.00 32.92 2.12
358 360 4.157840 GGGATGTGGTTGGTTTCAAGATAC 59.842 45.833 0.00 0.00 32.92 2.24
359 361 4.044065 AGGGATGTGGTTGGTTTCAAGATA 59.956 41.667 0.00 0.00 32.92 1.98
360 362 3.165071 GGGATGTGGTTGGTTTCAAGAT 58.835 45.455 0.00 0.00 32.92 2.40
361 363 2.176798 AGGGATGTGGTTGGTTTCAAGA 59.823 45.455 0.00 0.00 32.92 3.02
362 364 2.558359 GAGGGATGTGGTTGGTTTCAAG 59.442 50.000 0.00 0.00 32.92 3.02
363 365 2.593026 GAGGGATGTGGTTGGTTTCAA 58.407 47.619 0.00 0.00 0.00 2.69
364 366 1.203001 GGAGGGATGTGGTTGGTTTCA 60.203 52.381 0.00 0.00 0.00 2.69
365 367 1.545841 GGAGGGATGTGGTTGGTTTC 58.454 55.000 0.00 0.00 0.00 2.78
366 368 0.114364 GGGAGGGATGTGGTTGGTTT 59.886 55.000 0.00 0.00 0.00 3.27
367 369 1.774300 GGGAGGGATGTGGTTGGTT 59.226 57.895 0.00 0.00 0.00 3.67
368 370 2.238701 GGGGAGGGATGTGGTTGGT 61.239 63.158 0.00 0.00 0.00 3.67
369 371 2.683475 GGGGAGGGATGTGGTTGG 59.317 66.667 0.00 0.00 0.00 3.77
370 372 2.237965 TGGGGGAGGGATGTGGTTG 61.238 63.158 0.00 0.00 0.00 3.77
371 373 2.212761 TGGGGGAGGGATGTGGTT 59.787 61.111 0.00 0.00 0.00 3.67
372 374 2.614013 GTGGGGGAGGGATGTGGT 60.614 66.667 0.00 0.00 0.00 4.16
373 375 3.420482 GGTGGGGGAGGGATGTGG 61.420 72.222 0.00 0.00 0.00 4.17
374 376 2.286425 AGGTGGGGGAGGGATGTG 60.286 66.667 0.00 0.00 0.00 3.21
375 377 2.042930 GAGGTGGGGGAGGGATGT 59.957 66.667 0.00 0.00 0.00 3.06
376 378 1.386485 ATGAGGTGGGGGAGGGATG 60.386 63.158 0.00 0.00 0.00 3.51
377 379 1.386485 CATGAGGTGGGGGAGGGAT 60.386 63.158 0.00 0.00 0.00 3.85
378 380 2.042762 CATGAGGTGGGGGAGGGA 59.957 66.667 0.00 0.00 0.00 4.20
379 381 1.214305 TTTCATGAGGTGGGGGAGGG 61.214 60.000 0.00 0.00 0.00 4.30
380 382 0.704076 TTTTCATGAGGTGGGGGAGG 59.296 55.000 0.00 0.00 0.00 4.30
381 383 1.075374 TGTTTTCATGAGGTGGGGGAG 59.925 52.381 0.00 0.00 0.00 4.30
382 384 1.075374 CTGTTTTCATGAGGTGGGGGA 59.925 52.381 0.00 0.00 0.00 4.81
383 385 1.549203 CTGTTTTCATGAGGTGGGGG 58.451 55.000 0.00 0.00 0.00 5.40
384 386 0.890683 GCTGTTTTCATGAGGTGGGG 59.109 55.000 0.00 0.00 0.00 4.96
385 387 0.890683 GGCTGTTTTCATGAGGTGGG 59.109 55.000 0.00 0.00 0.00 4.61
386 388 1.270550 GTGGCTGTTTTCATGAGGTGG 59.729 52.381 0.00 0.00 0.00 4.61
387 389 1.069022 CGTGGCTGTTTTCATGAGGTG 60.069 52.381 0.00 0.00 0.00 4.00
388 390 1.202758 TCGTGGCTGTTTTCATGAGGT 60.203 47.619 0.00 0.00 0.00 3.85
389 391 1.466167 CTCGTGGCTGTTTTCATGAGG 59.534 52.381 0.00 0.00 41.08 3.86
390 392 2.416747 TCTCGTGGCTGTTTTCATGAG 58.583 47.619 0.00 0.00 44.22 2.90
391 393 2.542020 TCTCGTGGCTGTTTTCATGA 57.458 45.000 0.00 0.00 0.00 3.07
392 394 3.624326 TTTCTCGTGGCTGTTTTCATG 57.376 42.857 0.00 0.00 0.00 3.07
393 395 7.807977 ATATATTTCTCGTGGCTGTTTTCAT 57.192 32.000 0.00 0.00 0.00 2.57
394 396 7.624360 AATATATTTCTCGTGGCTGTTTTCA 57.376 32.000 0.00 0.00 0.00 2.69
395 397 8.798153 CAAAATATATTTCTCGTGGCTGTTTTC 58.202 33.333 11.08 0.00 0.00 2.29
396 398 8.519526 TCAAAATATATTTCTCGTGGCTGTTTT 58.480 29.630 11.08 0.00 0.00 2.43
397 399 8.050778 TCAAAATATATTTCTCGTGGCTGTTT 57.949 30.769 11.08 0.00 0.00 2.83
398 400 7.336931 ACTCAAAATATATTTCTCGTGGCTGTT 59.663 33.333 11.08 0.00 0.00 3.16
399 401 6.823689 ACTCAAAATATATTTCTCGTGGCTGT 59.176 34.615 11.08 4.40 0.00 4.40
400 402 7.011389 TCACTCAAAATATATTTCTCGTGGCTG 59.989 37.037 21.15 11.82 0.00 4.85
401 403 7.047891 TCACTCAAAATATATTTCTCGTGGCT 58.952 34.615 21.15 2.93 0.00 4.75
402 404 7.246674 TCACTCAAAATATATTTCTCGTGGC 57.753 36.000 21.15 0.00 0.00 5.01
403 405 9.490663 GTTTCACTCAAAATATATTTCTCGTGG 57.509 33.333 21.15 10.95 0.00 4.94
404 406 9.490663 GGTTTCACTCAAAATATATTTCTCGTG 57.509 33.333 11.08 15.65 0.00 4.35
405 407 9.226606 TGGTTTCACTCAAAATATATTTCTCGT 57.773 29.630 11.08 5.93 0.00 4.18
414 416 9.010029 ACTCGTATTTGGTTTCACTCAAAATAT 57.990 29.630 0.00 0.00 36.60 1.28
415 417 8.385898 ACTCGTATTTGGTTTCACTCAAAATA 57.614 30.769 0.00 0.00 36.60 1.40
416 418 7.272037 ACTCGTATTTGGTTTCACTCAAAAT 57.728 32.000 0.00 0.00 36.60 1.82
417 419 6.687081 ACTCGTATTTGGTTTCACTCAAAA 57.313 33.333 0.00 0.00 36.60 2.44
418 420 7.972832 ATACTCGTATTTGGTTTCACTCAAA 57.027 32.000 0.00 0.00 37.29 2.69
419 421 9.661563 AATATACTCGTATTTGGTTTCACTCAA 57.338 29.630 0.00 0.00 0.00 3.02
420 422 9.661563 AAATATACTCGTATTTGGTTTCACTCA 57.338 29.630 0.00 0.00 34.04 3.41
495 497 9.692749 GATCCGAAGTAGAATAATACATGTTCA 57.307 33.333 2.30 0.00 0.00 3.18
496 498 9.141400 GGATCCGAAGTAGAATAATACATGTTC 57.859 37.037 2.30 0.00 0.00 3.18
497 499 7.813148 CGGATCCGAAGTAGAATAATACATGTT 59.187 37.037 30.62 0.00 42.83 2.71
498 500 7.039923 ACGGATCCGAAGTAGAATAATACATGT 60.040 37.037 39.55 7.97 42.83 3.21
499 501 7.313646 ACGGATCCGAAGTAGAATAATACATG 58.686 38.462 39.55 4.73 42.83 3.21
500 502 7.463961 ACGGATCCGAAGTAGAATAATACAT 57.536 36.000 39.55 8.70 42.83 2.29
501 503 6.889301 ACGGATCCGAAGTAGAATAATACA 57.111 37.500 39.55 0.00 42.83 2.29
502 504 6.089150 GCAACGGATCCGAAGTAGAATAATAC 59.911 42.308 39.55 10.61 42.83 1.89
503 505 6.154445 GCAACGGATCCGAAGTAGAATAATA 58.846 40.000 39.55 0.00 42.83 0.98
504 506 4.989168 GCAACGGATCCGAAGTAGAATAAT 59.011 41.667 39.55 10.55 42.83 1.28
505 507 4.142116 TGCAACGGATCCGAAGTAGAATAA 60.142 41.667 39.55 10.88 42.83 1.40
506 508 3.382227 TGCAACGGATCCGAAGTAGAATA 59.618 43.478 39.55 12.75 42.83 1.75
507 509 2.167693 TGCAACGGATCCGAAGTAGAAT 59.832 45.455 39.55 12.74 42.83 2.40
508 510 1.546923 TGCAACGGATCCGAAGTAGAA 59.453 47.619 39.55 15.76 42.83 2.10
509 511 1.179152 TGCAACGGATCCGAAGTAGA 58.821 50.000 39.55 15.21 42.83 2.59
510 512 1.659098 GTTGCAACGGATCCGAAGTAG 59.341 52.381 39.55 22.62 42.83 2.57
511 513 1.717194 GTTGCAACGGATCCGAAGTA 58.283 50.000 39.55 25.68 42.83 2.24
512 514 2.540145 GTTGCAACGGATCCGAAGT 58.460 52.632 39.55 21.03 42.83 3.01
523 525 2.351888 GTGTCCGTGCGTTGCAAC 60.352 61.111 19.89 19.89 41.47 4.17
524 526 1.719725 AATGTGTCCGTGCGTTGCAA 61.720 50.000 0.00 0.00 41.47 4.08
525 527 2.183504 AATGTGTCCGTGCGTTGCA 61.184 52.632 0.00 0.00 35.60 4.08
526 528 1.725625 CAATGTGTCCGTGCGTTGC 60.726 57.895 0.00 0.00 0.00 4.17
527 529 1.725625 GCAATGTGTCCGTGCGTTG 60.726 57.895 0.00 0.00 35.40 4.10
528 530 0.601576 TAGCAATGTGTCCGTGCGTT 60.602 50.000 0.00 0.00 43.16 4.84
529 531 1.005512 TAGCAATGTGTCCGTGCGT 60.006 52.632 0.00 0.00 43.16 5.24
530 532 1.014044 ACTAGCAATGTGTCCGTGCG 61.014 55.000 0.00 0.00 43.16 5.34
531 533 1.135972 CAACTAGCAATGTGTCCGTGC 60.136 52.381 0.00 0.00 38.59 5.34
532 534 2.412870 TCAACTAGCAATGTGTCCGTG 58.587 47.619 0.00 0.00 0.00 4.94
533 535 2.037251 ACTCAACTAGCAATGTGTCCGT 59.963 45.455 0.00 0.00 0.00 4.69
534 536 2.688507 ACTCAACTAGCAATGTGTCCG 58.311 47.619 0.00 0.00 0.00 4.79
535 537 6.554334 TTTTACTCAACTAGCAATGTGTCC 57.446 37.500 0.00 0.00 0.00 4.02
536 538 8.936864 AGTATTTTACTCAACTAGCAATGTGTC 58.063 33.333 0.00 0.00 32.47 3.67
537 539 8.848474 AGTATTTTACTCAACTAGCAATGTGT 57.152 30.769 0.00 0.00 32.47 3.72
542 544 9.944663 CAACAAAGTATTTTACTCAACTAGCAA 57.055 29.630 0.00 0.00 35.03 3.91
543 545 9.116067 ACAACAAAGTATTTTACTCAACTAGCA 57.884 29.630 0.00 0.00 35.03 3.49
544 546 9.946165 AACAACAAAGTATTTTACTCAACTAGC 57.054 29.630 0.00 0.00 35.03 3.42
547 549 8.194769 CCCAACAACAAAGTATTTTACTCAACT 58.805 33.333 0.00 0.00 35.03 3.16
548 550 7.977293 ACCCAACAACAAAGTATTTTACTCAAC 59.023 33.333 0.00 0.00 35.03 3.18
549 551 7.976734 CACCCAACAACAAAGTATTTTACTCAA 59.023 33.333 0.00 0.00 35.03 3.02
564 566 3.849563 AGTTACTAGCACCCAACAACA 57.150 42.857 0.00 0.00 0.00 3.33
569 571 2.570302 GGAGGAAGTTACTAGCACCCAA 59.430 50.000 0.00 0.00 0.00 4.12
610 699 0.105964 CGATGCTATCCCCGAACCAA 59.894 55.000 0.00 0.00 0.00 3.67
640 732 0.466007 TGCACCAATCATCGATGGGG 60.466 55.000 24.61 23.11 37.45 4.96
674 769 5.524646 GGATGGCATGGTAAAATTTCATGTG 59.475 40.000 3.81 4.12 40.07 3.21
681 776 3.106054 TGCTGGATGGCATGGTAAAATT 58.894 40.909 3.81 0.00 37.29 1.82
708 803 9.372369 AGCAAGTACTTACTCAATGAATTACTC 57.628 33.333 8.04 0.00 34.99 2.59
717 812 5.677598 GCGAGAGAGCAAGTACTTACTCAAT 60.678 44.000 29.23 20.13 35.85 2.57
730 825 1.093972 CAGAGAGAGCGAGAGAGCAA 58.906 55.000 0.00 0.00 40.15 3.91
731 826 0.035534 ACAGAGAGAGCGAGAGAGCA 60.036 55.000 0.00 0.00 40.15 4.26
733 828 1.665679 GTGACAGAGAGAGCGAGAGAG 59.334 57.143 0.00 0.00 0.00 3.20
734 829 1.677518 GGTGACAGAGAGAGCGAGAGA 60.678 57.143 0.00 0.00 0.00 3.10
758 857 2.737376 GACGACTTGACGGTGGCC 60.737 66.667 0.00 0.00 37.61 5.36
759 858 2.022129 CAGACGACTTGACGGTGGC 61.022 63.158 0.00 0.00 37.61 5.01
763 862 0.663568 GGTGACAGACGACTTGACGG 60.664 60.000 0.00 0.00 37.61 4.79
869 968 2.141122 ATTTTTGGTGCGGTGCGGAG 62.141 55.000 0.00 0.00 0.00 4.63
870 969 2.196925 ATTTTTGGTGCGGTGCGGA 61.197 52.632 0.00 0.00 0.00 5.54
871 970 2.021039 CATTTTTGGTGCGGTGCGG 61.021 57.895 0.00 0.00 0.00 5.69
872 971 1.007964 TCATTTTTGGTGCGGTGCG 60.008 52.632 0.00 0.00 0.00 5.34
873 972 1.274798 CGTCATTTTTGGTGCGGTGC 61.275 55.000 0.00 0.00 0.00 5.01
874 973 1.274798 GCGTCATTTTTGGTGCGGTG 61.275 55.000 0.00 0.00 0.00 4.94
875 974 1.007849 GCGTCATTTTTGGTGCGGT 60.008 52.632 0.00 0.00 0.00 5.68
898 1007 1.075151 GGGAGAGTAGGACTGGGGG 60.075 68.421 0.00 0.00 0.00 5.40
1041 1165 3.812019 CTAGCCGTCCTGCGTCGT 61.812 66.667 0.00 0.00 39.32 4.34
1187 1316 0.947244 AACACCGACGACGAGTACTT 59.053 50.000 9.28 0.00 42.66 2.24
1399 1531 3.479269 GGCTTGTCGGCGTTCTCG 61.479 66.667 6.85 0.00 40.37 4.04
1478 1620 2.594962 GCGATCCGCGTAACCATGG 61.595 63.158 11.19 11.19 44.55 3.66
1628 1775 6.269769 AGAGAGTGTGGAGAGAGAAGAAAAAT 59.730 38.462 0.00 0.00 0.00 1.82
1664 1815 0.555769 AACAAGGAACCCAAGAGGCA 59.444 50.000 0.00 0.00 40.58 4.75
1736 1888 3.916172 CGCGCGGTAATAGTAATACATGT 59.084 43.478 24.84 2.69 0.00 3.21
1741 1893 2.318578 GCACGCGCGGTAATAGTAATA 58.681 47.619 35.22 0.00 0.00 0.98
1742 1894 1.134226 GCACGCGCGGTAATAGTAAT 58.866 50.000 35.22 5.42 0.00 1.89
1743 1895 2.580661 GCACGCGCGGTAATAGTAA 58.419 52.632 35.22 0.00 0.00 2.24
1744 1896 4.307258 GCACGCGCGGTAATAGTA 57.693 55.556 35.22 0.00 0.00 1.82
1773 1925 4.302455 AGAAGTGATGATGTATAGTGCGC 58.698 43.478 0.00 0.00 0.00 6.09
1774 1926 6.903419 TCTAGAAGTGATGATGTATAGTGCG 58.097 40.000 0.00 0.00 0.00 5.34
1775 1927 8.739039 AGATCTAGAAGTGATGATGTATAGTGC 58.261 37.037 0.00 0.00 0.00 4.40
1780 1932 8.676401 CGATCAGATCTAGAAGTGATGATGTAT 58.324 37.037 19.77 1.20 29.66 2.29
1781 1933 7.663493 ACGATCAGATCTAGAAGTGATGATGTA 59.337 37.037 19.77 0.00 29.66 2.29
1782 1934 6.489700 ACGATCAGATCTAGAAGTGATGATGT 59.510 38.462 19.77 13.81 29.66 3.06
1783 1935 6.912082 ACGATCAGATCTAGAAGTGATGATG 58.088 40.000 19.77 13.36 29.66 3.07
1784 1936 7.523293 AACGATCAGATCTAGAAGTGATGAT 57.477 36.000 19.77 13.63 29.66 2.45
1785 1937 6.951062 AACGATCAGATCTAGAAGTGATGA 57.049 37.500 19.77 10.26 29.66 2.92
1884 2036 4.202000 GCTAGTACTCCCTCCGTAAAGAAC 60.202 50.000 0.00 0.00 0.00 3.01
1910 2062 5.449725 GGCTGAATTCTTCAAGATGGTTAGC 60.450 44.000 7.05 2.26 39.58 3.09
1912 2064 4.949856 GGGCTGAATTCTTCAAGATGGTTA 59.050 41.667 7.05 0.00 39.58 2.85
1914 2066 3.359950 GGGCTGAATTCTTCAAGATGGT 58.640 45.455 7.05 0.00 39.58 3.55
1918 2070 3.417069 TTCGGGCTGAATTCTTCAAGA 57.583 42.857 4.22 0.00 39.58 3.02
1919 2071 4.503741 TTTTCGGGCTGAATTCTTCAAG 57.496 40.909 10.03 0.00 39.58 3.02
1995 2181 1.003355 CGCTTCTGCCCCTTCTTCA 60.003 57.895 0.00 0.00 35.36 3.02
2201 2502 1.291184 GAAACCAAAAGCGCCCATGC 61.291 55.000 2.29 0.00 0.00 4.06
2493 2821 0.323451 GGGGTAAAGCTCAGTTGGGG 60.323 60.000 0.00 0.00 0.00 4.96
2524 2852 1.523258 CTCTCTGCCCTGCGGATTG 60.523 63.158 0.00 0.00 43.40 2.67
2575 2904 7.179269 ACAGAGGGAGTATATCTCAAGTATCC 58.821 42.308 0.00 0.00 44.40 2.59
2581 2910 6.031964 AGGAACAGAGGGAGTATATCTCAA 57.968 41.667 0.00 0.00 44.40 3.02
2582 2911 5.671463 AGGAACAGAGGGAGTATATCTCA 57.329 43.478 0.00 0.00 44.40 3.27
2584 2913 9.536510 GTATTTAGGAACAGAGGGAGTATATCT 57.463 37.037 0.00 0.00 0.00 1.98
2587 2916 9.144298 CAAGTATTTAGGAACAGAGGGAGTATA 57.856 37.037 0.00 0.00 0.00 1.47
2588 2917 7.624077 ACAAGTATTTAGGAACAGAGGGAGTAT 59.376 37.037 0.00 0.00 0.00 2.12
2742 3071 1.808133 GCATGCTTTCTACTCCCTCCG 60.808 57.143 11.37 0.00 0.00 4.63
2750 3079 7.705325 AGATGAAAATGATTGCATGCTTTCTAC 59.295 33.333 20.33 14.90 34.78 2.59
2751 3080 7.778083 AGATGAAAATGATTGCATGCTTTCTA 58.222 30.769 20.33 9.95 34.78 2.10
2752 3081 6.640518 AGATGAAAATGATTGCATGCTTTCT 58.359 32.000 20.33 8.85 34.78 2.52
2753 3082 6.903883 AGATGAAAATGATTGCATGCTTTC 57.096 33.333 20.33 18.12 34.78 2.62
2754 3083 6.653320 ACAAGATGAAAATGATTGCATGCTTT 59.347 30.769 20.33 9.67 34.78 3.51
2755 3084 6.092122 CACAAGATGAAAATGATTGCATGCTT 59.908 34.615 20.33 6.31 34.78 3.91
2756 3085 5.580691 CACAAGATGAAAATGATTGCATGCT 59.419 36.000 20.33 0.00 34.78 3.79
2757 3086 5.220586 CCACAAGATGAAAATGATTGCATGC 60.221 40.000 11.82 11.82 34.78 4.06
2758 3087 6.103330 TCCACAAGATGAAAATGATTGCATG 58.897 36.000 0.00 0.00 34.78 4.06
2759 3088 6.070995 ACTCCACAAGATGAAAATGATTGCAT 60.071 34.615 0.00 0.00 37.52 3.96
2760 3089 5.244402 ACTCCACAAGATGAAAATGATTGCA 59.756 36.000 0.00 0.00 0.00 4.08
2761 3090 5.575606 CACTCCACAAGATGAAAATGATTGC 59.424 40.000 0.00 0.00 0.00 3.56
2762 3091 6.916440 TCACTCCACAAGATGAAAATGATTG 58.084 36.000 0.00 0.00 0.00 2.67
2763 3092 6.152323 CCTCACTCCACAAGATGAAAATGATT 59.848 38.462 0.00 0.00 0.00 2.57
2764 3093 5.651139 CCTCACTCCACAAGATGAAAATGAT 59.349 40.000 0.00 0.00 0.00 2.45
2765 3094 5.005740 CCTCACTCCACAAGATGAAAATGA 58.994 41.667 0.00 0.00 0.00 2.57
2766 3095 5.005740 TCCTCACTCCACAAGATGAAAATG 58.994 41.667 0.00 0.00 0.00 2.32
2767 3096 5.246981 TCCTCACTCCACAAGATGAAAAT 57.753 39.130 0.00 0.00 0.00 1.82
2768 3097 4.705110 TCCTCACTCCACAAGATGAAAA 57.295 40.909 0.00 0.00 0.00 2.29
2769 3098 4.916041 ATCCTCACTCCACAAGATGAAA 57.084 40.909 0.00 0.00 0.00 2.69
2770 3099 6.566079 AATATCCTCACTCCACAAGATGAA 57.434 37.500 0.00 0.00 0.00 2.57
2771 3100 6.156775 TCAAATATCCTCACTCCACAAGATGA 59.843 38.462 0.00 0.00 0.00 2.92
2772 3101 6.351711 TCAAATATCCTCACTCCACAAGATG 58.648 40.000 0.00 0.00 0.00 2.90
2773 3102 6.385176 TCTCAAATATCCTCACTCCACAAGAT 59.615 38.462 0.00 0.00 0.00 2.40
2774 3103 5.721480 TCTCAAATATCCTCACTCCACAAGA 59.279 40.000 0.00 0.00 0.00 3.02
2775 3104 5.982356 TCTCAAATATCCTCACTCCACAAG 58.018 41.667 0.00 0.00 0.00 3.16
2776 3105 6.156775 TCATCTCAAATATCCTCACTCCACAA 59.843 38.462 0.00 0.00 0.00 3.33
2779 3108 5.306419 CCTCATCTCAAATATCCTCACTCCA 59.694 44.000 0.00 0.00 0.00 3.86
2855 3184 5.128171 TGAGAACGTATGCATATATACCCCC 59.872 44.000 10.16 0.00 31.33 5.40
2860 3189 8.364894 AGTTTGGTGAGAACGTATGCATATATA 58.635 33.333 10.16 0.00 32.38 0.86
2861 3190 7.171508 CAGTTTGGTGAGAACGTATGCATATAT 59.828 37.037 10.16 0.00 32.38 0.86
2882 3211 2.485814 GCTCAAGATCGAAAGCCAGTTT 59.514 45.455 0.00 0.00 0.00 2.66
2939 3268 1.371183 CTCCACCCGCTTCTTCACA 59.629 57.895 0.00 0.00 0.00 3.58
3182 3511 2.670934 AGCTGCTGCAAAGACGGG 60.671 61.111 18.42 0.00 42.74 5.28
3203 3532 4.764336 CGTAGTTCGTCGCCGCCA 62.764 66.667 0.00 0.00 34.52 5.69
3218 3547 2.807392 GCTATAGCTAGTCGACCTTCGT 59.193 50.000 17.75 0.00 38.44 3.85
3264 3593 1.548719 AGGAACCAACGATGACGATGA 59.451 47.619 0.00 0.00 43.20 2.92
3265 3594 1.927174 GAGGAACCAACGATGACGATG 59.073 52.381 0.00 0.00 42.66 3.84
3266 3595 1.134788 GGAGGAACCAACGATGACGAT 60.135 52.381 0.00 0.00 39.65 3.73
3267 3596 0.245539 GGAGGAACCAACGATGACGA 59.754 55.000 0.00 0.00 39.65 4.20
3410 3744 3.387699 GTGGGGGAAATATGTTTGGATGG 59.612 47.826 0.00 0.00 0.00 3.51
3457 3812 4.975502 TGCTCAAAGTGCAAGATTTTAACG 59.024 37.500 0.00 0.00 37.51 3.18
3518 3873 9.837525 CTGGATTTTTCTTAAATCTCAGTCTTG 57.162 33.333 9.36 0.00 36.97 3.02
3848 4209 6.515832 ACAAAGCCCTATTGCATAATTTAGC 58.484 36.000 0.00 0.00 0.00 3.09
3936 4298 7.907214 CGCAAGGAATTAAAGCCTAGTATAT 57.093 36.000 0.41 0.00 33.20 0.86
4322 4860 3.634448 AGAGAGAGAGAGAGAGAGAGTCG 59.366 52.174 0.00 0.00 0.00 4.18
4327 4865 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4328 4866 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4329 4867 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4330 4868 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4331 4869 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4332 4870 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4333 4871 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4334 4872 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4335 4873 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4336 4874 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4337 4875 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4338 4876 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4339 4877 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4340 4878 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4341 4879 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4342 4880 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
4343 4881 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
4344 4882 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
4345 4883 4.892345 TCTGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
4346 4884 4.646945 GTCTGAGAGAGAGAGAGAGAGAGA 59.353 50.000 0.00 0.00 0.00 3.10
4347 4885 4.403752 TGTCTGAGAGAGAGAGAGAGAGAG 59.596 50.000 0.00 0.00 0.00 3.20
4348 4886 4.352893 TGTCTGAGAGAGAGAGAGAGAGA 58.647 47.826 0.00 0.00 0.00 3.10
4434 5009 5.478332 GGGAGATAATTCTGCATAAAAGGGG 59.522 44.000 0.00 0.00 41.79 4.79
4438 5013 7.939039 CCAGTAGGGAGATAATTCTGCATAAAA 59.061 37.037 0.00 0.00 41.79 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.